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Posted to commits@river.apache.org by pe...@apache.org on 2014/05/09 09:03:19 UTC

svn commit: r1593493 [18/24] - in /river/jtsk/skunk/qa_refactor/trunk: qa/ qa/src/com/sun/jini/test/impl/end2end/jssewrapper/ qa/src/com/sun/jini/test/impl/joinmanager/ qa/src/com/sun/jini/test/impl/mahalo/ qa/src/com/sun/jini/test/impl/outrigger/match...

Modified: river/jtsk/skunk/qa_refactor/trunk/src/com/sun/jini/tool/ClassDep.java
URL: http://svn.apache.org/viewvc/river/jtsk/skunk/qa_refactor/trunk/src/com/sun/jini/tool/ClassDep.java?rev=1593493&r1=1593492&r2=1593493&view=diff
==============================================================================
--- river/jtsk/skunk/qa_refactor/trunk/src/com/sun/jini/tool/ClassDep.java (original)
+++ river/jtsk/skunk/qa_refactor/trunk/src/com/sun/jini/tool/ClassDep.java Fri May  9 07:03:18 2014
@@ -1,1340 +1,1343 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership. The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License. You may obtain a copy of the License at
- * 
- *      http://www.apache.org/licenses/LICENSE-2.0
- * 
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-package com.sun.jini.tool;
-
-import com.sun.jini.tool.classdepend.ClassDepend;
-import com.sun.jini.tool.classdepend.ClassDependParameters;
-import com.sun.jini.tool.classdepend.ClassDependParameters.CDPBuilder;
-import com.sun.jini.tool.classdepend.ClassDependencyRelationship;
-import java.text.MessageFormat;
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Collections;
-import java.util.Comparator;
-import java.util.MissingResourceException;
-import java.util.ResourceBundle;
-import java.util.SortedSet;
-import java.util.TreeSet;
-import java.io.File;
-import java.io.IOException;
-import java.util.Iterator;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-
-/**
- * Tool used to analyze a set of classes and determine on what other classes
- * they directly or indirectly depend. Typically this tool is used to
- * compute the necessary and sufficient set of classes to include in a JAR
- * file, for use in the class path of a client or service, or for use in the
- * codebase of a client or service. The tool starts with a set of "root"
- * classes and recursively computes a dependency graph, finding all of the
- * classes referenced directly by the root classes, finding all of the
- * classes referenced in turn by those classes, and so on, until no new
- * classes are found or until classes that are not of interest are
- * found. The normal output of the tool is a list of all of the classes in
- * the dependency graph. The output from this command can be used as input
- * to the <code>jar</code> tool, to create a JAR file containing precisely
- * those classes.
- * <p>
- * The following items are discussed below:
- * <ul>
- * <li><a href="#running">Running the Tool</a>
- * <li><a href="#processing">Processing Options</a>
- * <li><a href="#output">Output Options and Arguments</a>
- * <li><a href="#examples">Examples</a>
- * </ul>
- *
- * <a name="running"></a>
- * <h3>Running the Tool</h3>
- *
- * The command line for running the tool has the form:
- * <blockquote><pre>
- * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
- *      -cp <var><b>input_classpath</b></var> <var><b>processing_options</b></var> <var><b>output_options</b></var>
- * </pre></blockquote>
- * <p>
- * where <var><b>install_dir</b></var> is the directory where the Apache River release
- * is installed.
- * Note that the options for this tool can be specified in any order, and
- * can be intermixed.
- *
- * <p>
- * The <code>-cp</code> class path value,
- * <var><b>input_classpath</b></var>,
- * is an argument to the <code>ClassDep</code> tool itself and should
- * include all of the classes that might need to be included in the
- * dependency analysis. Typically this will include all of your application
- * classes, classes from the Apache River release, and any other classes on which
- * your classes might depend. It is safe to include more classes than are
- * actually necessary (since the purpose of this tool is, after all, to
- * determine which subset of these classes is actually necessary), but it is
- * not necessary to include any classes that are part of the Java 2 SDK.
- * The class path should be in the form of a list of directories or JAR
- * files, delimited by a colon (":") on UNIX platforms and a semi-colon
- * (";") on Microsoft Windows platforms. The order of locations in the path
- * does not matter. If you use JAR files, any <code>Class-Path</code>
- * manifest entries in those JAR files are ignored, so you must include the
- * values of those manifest entries explicitly in the path, or errors may
- * result. For example, if you include <code>jini-ext.jar</code> then you
- * should explicitly include <code>jini-core.jar</code> as well, because
- * <code>jini-core.jar</code> is in the <code>Class-Path</code> manifest
- * entry of <code>jini-ext.jar</code>.</dd>
- *
- * <a name="processing"></a>
- * <h3>Processing Options</h3>
- *
- * The root classes of the dependency graph can be specified by any
- * combination of individual classes and directories of classes. Each of
- * these options can be used any number of times, and are illustrated in the
- * <a href="#examples">Examples</a> section of this page.
- * <p>
- * In general, you only need to specify concrete classes as roots, not
- * interface types. When analyzing classes for the class path of an
- * application, you typically need to include the top-level class (the one
- * with the <code>main</code> method). When analyzing classes for the
- * codebase of a service, you typically need to include the top-level proxy
- * classes used by the service, any trust verifier classes for those
- * proxies, and any custom entry classes used by the service for lookup
- * service attributes. Also when analyzing classes for the codebase of a
- * service, if the service's proxy can return leases, registration objects,
- * or other proxies, or if your service generates events, and if those
- * objects are only referenced by interface type in the top-level proxy, not
- * by concrete class, then you also need to include the concrete classes of
- * those other objects. In all cases, you typically need to include any stub
- * classes that you generated with the <code>rmic</code> tool.
- * <p>
- * <dl>
- * <dt><b><var>class</var></b>
- * <dd>This option specifies the fully qualified name of an individual class
- * to include as a root of the dependency graph. This option can be
- * specified zero or more times. Each class you specify with this option
- * needs to be in a package that is defined to be "inside" the graph (as
- * described further below).</dd>
- * <p>
- * <dt><b><var>directory</var></b>
- * <dd>This option specifies the root directory of a tree of compiled class
- * files, all of which are to be included as roots of the dependency
- * graph. This option can be specified zero or more times. The directory
- * must be one of the directories specified in
- * <var><b>input_classpath</b></var>,
- * or a subdirectory of one, and must contain at least one filename
- * separator character. Each class in the tree needs to be in a package that
- * is defined to be "inside" the graph (as described further below).
- * <p>
- * <dt><b><var>directory</var></b>
- * <dd>This option specifies the root directory of a tree of compiled class
- * files that are considered as root for the dependency checking. This option
- * can be specified zero or more times. The actual behavior depends on whether
- * the <code>-newdirbehavior</code> options is specified. The directory must
- * contain at least one filename separator character and be one of the
- * directories specified in <var><b>input_classpath</b></var>, or when the old
- * behavior is effective it can be a subdirectory of one of the directories on
- * the <var><b>input_classpath</b></var>. Each class in the tree needs to be in
- * a package that is defined to be "inside" the graph (as described further
- * below).
- * <p>
- * When the <code>-newdirbehavior</code> options is set the <code>-inroot</code>
- * and <code>-outroot</code> options can be used to include/exclude particular
- * subtrees from the potential set of roots. When the old behavior is effective
- * all classes are considered as root, but can be excluded through the
- * <code>-prune</code> option.
- * <p>
- * <dl>
- * <dt><b><code>-inroot</code> <var>package-prefix</var></b> (only valid with
- * <code>-newdirbehavior</code>)
- * <dd>Specifies a package namespace to include when selecting roots from the
- * directory trees. Any classes found in this package or a subpackage of it are
- * considered as root for the dependency checking, unless they are explicitly
- * excluded using <code>-out</code>, <code>-skip</code> or <code>-outroot</code>
- * options. If not specified all found classes are considered roots. This option
- * can be specified zero or more times. Note that the argument to
- * <code>-inroot</code> is a package namespace (delimited by "."), not a
- * directory.</dd>
- * </dl>
- * <p>
- * <dl>
- * <dt><b><code>-outroot</code> <var>package-prefix</var></b> (only valid with
- * <code>-newdirbehavior</code>)
- * <dd>Specifies a package namespace to exclude when selecting roots from the
- * directory trees. Within the directory trees as specified by the
- * <code>rootdir</code> element, any classes that are in the given package or a
- * subpackage of it are not treated as roots. This option can be specified zero
- * or more times. Note that the argument to <code>-outroot</code> is a package
- * namespace (delimited by "."), not a directory.</dd>
- * </dl>
- * <p>
- * <dl>
- * <dt><b><code>-prune</code> <var>package-prefix</var></b> (old behavior only)
- * <dd>Specifies a package namespace to exclude when selecting roots from
- * directory trees. Within the directory trees, any classes that are in the
- * given package or a subpackage of it are not treated as roots. Note that
- * this option has <i>no</i> effect on whether the classes in question end
- * up "inside" or "outside" the dependency graph (as defined further below);
- * it simply controls their use as roots. This option can be specified zero
- * or more times. Note that the argument to <code>-prune</code> is a package
- * namespace (delimited by "."), not a directory.</dd>
- * </dl>
- * <p>
- * The <code>-skip</code> option (described further below) can be used to
- * exclude specific classes from the set of roots.
- * </dd>
- * </dl>
- * <p>
- * Starting with the root classes, a dependency graph is constructed by
- * examining the compiled class file for a class, finding all of the classes
- * it references, and then in turn examining those classes.  The extent of
- * the graph is determined by which packages are defined to be "inside" the
- * graph and which are defined to be "outside" the graph.  If a referenced
- * class is in a package that is defined to be outside the graph, that class
- * is not included in the graph, and none of classes that it references are
- * examined. All of the root classes must be in packages that are defined to
- * be "inside" the graph.
- * <p>
- * The inside and outside packages are specified by using the following
- * options. Each of these options may be specified zero or more times.  Some
- * variations are illustrated in the <a href="#examples">Examples</a> section
- * of this page.
- * <p>
- * <dl>
- * <dt><b><code>-in</code> <var>package-prefix</var></b>
- * <dd>Specifies a namespace of "inside" packages. Any classes in this
- * package or a subpackage of it are included in the dependency graph (and
- * hence are to be included in your JAR file), unless they are explicitly
- * excluded using <code>-out</code> or <code>-skip</code> options. This
- * option can be specified zero or more times. If no <code>-in</code>
- * options are specified, the default is that all packages are considered to
- * be inside packages.  Note that the argument to <code>-in</code> is a
- * namespace, so none of its subpackages need to be specified as an argument
- * to <code>-in</code>.
- * <p>
- * If you use this option, you will likely need to use it multiple
- * times. For example, if your application classes are in the
- * <code>com.corp.foo</code> namespace, and you also use some classes in the
- * <code>com.sun.jini</code> and <code>net.jini</code> namespaces, then you
- * might specify:
- * <pre>-in com.corp.foo -in com.sun.jini -in net.jini</pre>
- * </dd>
- * <p>
- * <dt><b><code>-out</code> <var>package-prefix</var></b>
- * <dd>Specifies a namespace of "outside" packages. Any classes in this
- * package or a subpackage of it are excluded from the dependency graph (and
- * hence are to be excluded from your JAR file). This option can be
- * specified zero or more times.  If you specify <code>-in</code> options,
- * then each <code>-out</code> namespace should be a subspace of some
- * <code>-in</code> namespace. Note that the argument to <code>-out</code>
- * is a namespace, so none of its subpackages need to be specified as an
- * argument to <code>-out</code>.
- * <p>
- * If you use this option, you will likely need to use it multiple
- * times. For example, if you do not specify any <code>-in</code> options,
- * then all packages are considered inside the graph, including packages
- * defined in the Java 2 SDK that you typically want to exclude, so you
- * might exclude them by specifying:
- * <pre>-out java -out javax</pre>
- * As another example, if you have specified <code>-in com.corp.foo</code>
- * but you don't want to include any of the classes in the
- * <code>com.corp.foo.test</code> or <code>com.corp.foo.qa</code> namespaces
- * in the dependency graph, then you would specify:
- * <pre>-out com.corp.foo.test -out com.corp.foo.qa</pre>
- * </dd>
- * <p>
- * <dt><b><code>-skip</code> <var>class</var></b>
- * <dd>Specifies the fully qualified name of a specific class to exclude
- * from the dependency graph. This option allows an individual class to be
- * considered "outside" without requiring the entire package it is defined
- * in to be considered outside.  This option can be specified zero or more
- * times.
- * </dd> 
- * <p>
- * <dt><b><code>-outer</code></b>
- * <dd>By default, if a static nested class is included in the dependency
- * graph, all references from that static nested class to its immediate
- * lexically enclosing class are ignored (except when the static nested class
- * extends its outer class), to avoid inadvertent inclusion of the enclosing
- * class. (The default is chosen this way because the compiled class file of a
- * static nested class always contains a reference to the immediate lexically
- * enclosing class.) This option causes all such references to be considered
- * rather than ignored.  Note that this option is needed very infrequently.</dd>
- * </dl>
- * <p>
- * <dt><b><code>-newdirbehavior</code></b>
- * <dd>This option causes the utility to select classes, to serve as root for
- * the dependency checking, from the directory argument based on the
- * <code>-inroot</code> and <code>-outroot</code> options specified. When
- * this option is set subdirectories of the specified directory are no longer
- * considered as root for finding classes. When this option is not set, the
- * default, the utility maintains the old behavior with respect to the semantics
- * for the directories passed in and the <code>-prune</code> option must be
- * used. You are advised to set this option as there are some edge cases for
- * which the old behavior won't work as expected, especially when no
- * <code>-in</code> options are set.</dd>
- * </dl>
- *
- * <a name="output"></a>
- * <h3>Output Options and Arguments</h3>
- * 
- * The following options and arguments determine the content and format of
- * the output produced by this tool. These options do not affect the
- * dependency graph computation, only the information displayed in the
- * output as a result of the computation. Most of these options may be
- * specified multiple times. Some variations are illustrated in the
- * <a href="#examples">Examples</a> section of this page.
- * <dl>
- * <dt><b><code>-edges</code></b>
- * <dd>By default, the classes which are included in the dependency graph
- * are displayed in the output. This option specifies that instead, the
- * classes which are excluded from the dependency graph, but which are
- * directly referenced by classes in the dependency graph, should be
- * displayed in the output. These classes form the outside "edges" of the
- * dependency graph.
- * <p>
- * For example, you might exclude classes from the Java 2 SDK from the
- * dependency graph because you don't want to include them in your JAR file,
- * but you might be interested in knowing which classes from the Java 2 SDK
- * are referenced directly by the classes in your JAR file. The
- * <code>-edges</code> option can be used to display this information.
- * </dd>
- * <p>
- * <dt><b><code>-show</code> <var>package-prefix</var></b>
- * <dd>Displays the classes that are in the specified package or a
- * subpackage of it. This option can be specified zero or more times. If no
- * <code>-show</code> options are specified, the default is that all classes
- * in the dependency graph are displayed (or all edge classes, if
- * <code>-edges</code> is specified). Note that the argument to
- * <code>-show</code> is a namespace, so none of its subpackages need to be
- * specified as an argument to <code>-show</code>.
- * <p>
- * For example, to determine which classes from the Java 2 SDK your
- * application depends on, you might not specify any <code>-in</code>
- * options, but limit the output by specifying:
- * <pre>-show java -show javax</pre></dd>
- * <p>
- * <dt><b><code>-hide</code> <var>package-prefix</var></b>
- * <dd>Specifies a namespace of packages which should not be displayed. Any
- * classes in this package or a subpackage of it are excluded from the
- * output. This option can be specified zero or more times. If you specify
- * <code>-show</code> options, then each <code>-hide</code> namespace should
- * be a subspace of some <code>-show</code> namespace. Note that the
- * argument to <code>-hide</code> is a namespace, so none of its subpackages
- * need to be specified as an argument to <code>-hide</code>.
- * <p>
- * For example, to determine which non-core classes from the
- * <code>net.jini</code> namespace you use, you might specify:
- * <pre>-show net.jini -hide net.jini.core</pre></dd>
- * <p>
- * <dt><b><code>-files</code></b>
- * <dd>By default, fully qualified class names are displayed, with package
- * names delimited by ".". This option causes the output to be in filename
- * format instead, with package names delimited by filename separators and
- * with ".class" appended. For example, using this option on Microsoft
- * Windows platforms would produce output in the form of
- * <code>com\corp\foo\Bar.class</code> instead of
- * <code>com.corp.foo.Bar</code>. This option should be used to generate
- * output suitable as input to the <code>jar</code> tool.
- * <p>
- * For more information on the <code>jar</code> tool, see:
- * <ul>
- * <li><a href="http://java.sun.com/j2se/1.4/docs/tooldocs/solaris/jar.html">
- * http://java.sun.com/j2se/1.4/docs/tooldocs/solaris/jar.html</a>
- * <li><a href="http://java.sun.com/j2se/1.4/docs/tooldocs/windows/jar.html">
- * http://java.sun.com/j2se/1.4/docs/tooldocs/windows/jar.html</a>
- * <li><a href="http://java.sun.com/j2se/1.4/docs/guide/jar/jar.html">
- * http://java.sun.com/j2se/1.4/docs/guide/jar/jar.html</a>
- * </ul>
- * </dd>
- * <p>
- * <dt><b><code>-tell</code> <var>class</var></b>
- * <dd>Specifies the fully qualified name of a class for which dependency
- * information is desired. This option causes the tool to display
- * information about every class in the dependency graph that references the
- * specified class. This information is sent to the error stream of the
- * tool, not to the normal output stream.  This option can be specified zero
- * or more times. If this option is used, all other output options are
- * ignored, and the normal class output is not produced. This option is
- * useful for debugging.
- * </dd>
- * </dl>
- * 
- * <a name="examples"></a>
- * <h3>Examples</h3>
- *
- * (The examples in this section assume you ran the Apache River release installer
- * with an "Install Set" selection that created the top-level
- * <code>classes</code> directory. Alternatively, if you have compiled from
- * the source code, substitute <code>source/classes</code> for
- * <code>classes</code> in the examples.)
- * <p>
- * The following example computes the classes required for a codebase JAR
- * file, starting with a smart proxy class and a stub class as roots, and
- * displays them in filename format. (A more complete example would include
- * additional roots for leases, registrations, events, and lookup service
- * attributes, and would exclude platform classes such as those in
- * <code>jsk-platform.jar</code>.)
- * <p>
- * <blockquote><pre>
- * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
- *      -cp <var><b>install_dir</b></var>/classes \
- *      com.sun.jini.reggie.RegistrarProxy com.sun.jini.reggie.RegistrarImpl_Stub \
- *      -in com.sun.jini -in net.jini \
- *      -files
- * </pre></blockquote>
- * <p>
- * The following example computes the classes required for a classpath JAR
- * file, starting with all of the classes in a directory as roots, and
- * displays them in class name format. (A more complete example would exclude
- * platform classes such as those in <code>jsk-platform.jar</code>.)
- * <p>
- * <blockquote><pre>
- * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
- *      -cp <var><b>install_dir</b></var>/classes \
- *      <var><b>install_dir</b></var>/classes/com/sun/jini/reggie \
- *      -in com.sun.jini -in net.jini
- * </pre></blockquote>
- * <p>
- * The following example computes the <code>com.sun.jini</code> classes used
- * by a service implementation, and displays the <code>net.jini</code>
- * classes that are immediately referenced by those classes.
- * <p>
- * <blockquote><pre>
- * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
- *      -cp <var><b>install_dir</b></var>/classes \
- *      com.sun.jini.reggie.RegistrarImpl \
- *      -in com.sun.jini \
- *      -edges \
- *      -show net.jini
- * </pre></blockquote>
- * <p>
- * The following example computes all of the classes used by a service
- * implementation that are not part of the Java 2 SDK, and displays the
- * classes that directly reference the class <code>java.awt.Image</code>.
- * <p>
- * <blockquote><pre>
- * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
- *      -cp <var><b>install_dir</b></var>/classes \
- *      com.sun.jini.reggie.RegistrarImpl \
- *      -out java -out javax \
- *      -tell java.awt.Image
- * </pre></blockquote>
- * <p>
- * The following example computes all of the classes to include in
- * <code>jini-ext.jar</code> and displays them in filename format.  Note
- * that both <code>-out</code> and <code>-prune</code> options are needed
- * for the <code>net.jini.core</code> namespace; <code>-out</code> to
- * exclude classes from the dependency graph, and <code>-prune</code> to
- * prevent classes from being used as roots.
- * <p>
- * <blockquote><pre>
- * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
- *      -cp <var><b>install_dir</b></var>/classes \
- *      -in net.jini -out net.jini.core -in com.sun.jini \
- *      <var><b>install_dir</b></var>/classes/net/jini -prune net.jini.core \
- *      -files
- * </pre></blockquote>
- *
- * @author Sun Microsystems, Inc.
- */
-public class ClassDep {
-    private ClassDepend cd;
-     
-    /**
-     * If true class names are printed using
-     * the system's File.separator, else the 
-     * fully qualified class name is printed.
-     */
-    private boolean files = false;
-    /**
-     * Set of paths to find class definitions in order to determine 
-     * dependencies.
-     */
-    private String classpath = "";
-    /**
-     * Flag to determine whether there is interest
-     * in dependencies that go outside the set of 
-     * interested classes. If false then outside,
-     * references are ignored, if true they are noted.
-     * i.e, if looking only under <code>net.jini.core.lease</code>
-     * a reference to a class in <code>net.jini</code> is found it
-     * will be noted if the flag is set to true, else
-     * it will be ignored. <p>
-     * <b>Note:</b> these edge case dependencies must be
-     * included in the classpath in order to find their
-     * definitions.
-     */
-    private  boolean edges = false;
-    /**
-     * Static inner classes have a dependency on their outer
-     * parent class. Because the parent class may be really
-     * big and may pull other classes along with it we allow the
-     * choice to ignore the parent or not. If the flag is set to
-     * true we pull in the parent class. If it is false we don't
-     * look at the parent. The default is is to not include the 
-     * parent. <p>
-     * <b>Note:</b> This is an optimization for those who plan
-     * on doing work with the output of this utility. It does
-     * not impact this utility, but the work done on its 
-     * generated output  may have an impact. 
-     * 
-     * This will have to be implemented in ClassDepend note the above
-     * description conflicts with the variable name.
-     */
-    private  boolean ignoreOuter = true;
-    /**
-     * Package set that we have interest to work in.
-     */
-    private  final ArrayList inside  = new ArrayList();
-    /**
-     * Package set to not work with. This is useful if
-     * there is a subpackage that needs to be ignored.
-     */
-    private  final ArrayList outside = new ArrayList();
-    /**
-     * Class set to look at for dependencies. These are
-     * fully qualified names, ie, net.jini.core.lease.Lease.
-     * This is a subset of the values in
-     * <code>inside</code>.
-     */
-    private  final ArrayList classes = new ArrayList();
-    /**
-     * Set of directories to find dependencies in.
-     */
-    private  final ArrayList roots   = new ArrayList();
-    /**
-     * Set of packages to skip over in the processing of dependencies.
-     * This can be used in conjunction with <em>-out</em> option.
-     */
-    private  final ArrayList prunes  = new ArrayList();
-    /**
-     * Indicates whether the root directories specified for finding classes
-     * for dependency checking must be traversed in the 'old' way, or that the
-     * new behavior must be effective.
-     */
-    private boolean newRootDirBehavior;
-    /**
-     * Set of packages to include when classes are found through the specified
-     * root directories.
-     */
-    private  final ArrayList insideRoots  = new ArrayList();
-    /**
-     * Set of packages to exclude when classes are found through the specified
-     * root directories.
-     */
-    private  final ArrayList outsideRoots  = new ArrayList();
-    /**
-     * Set of classes to skip over in the processing of dependencies.
-     */
-    private  final ArrayList skips   = new ArrayList();
-    /**
-     * Given a specific fully qualified classes, what other classes
-     * in the roots list depend on it. This is more for debugging
-     * purposes rather then normal day to day usage.
-     */
-    private  final ArrayList tells   = new ArrayList();
-    /**
-     * Only display found dependencies that fall under the provided
-     * <code>roots</code> subset.
-     */
-    private  final ArrayList shows   = new ArrayList();
-    /**
-     * Suppress display of found dependencies that are under
-     * the provided package prefixes subset.
-     */
-    private  final ArrayList hides   = new ArrayList();
-    /**
-     * Container for found dependency classes.
-     */
-    private final SortedSet results = new TreeSet();
-
-    /**
-     * Indicates whether a failure has been encountered during deep dependency
-     * checking.
-     */
-    private boolean failed;
-
-    /**
-     * No argument constructor. The user must fill in the
-     * appropriate fields prior to asking for the processing
-     * of dependencies.
-     */
-    public ClassDep() {
-    }
-
-    /**
-     * Constructor that takes command line arguments and fills in the
-     * appropriate fields. See the description of this class
-     * for a list and description of the acceptable arguments.
-     * @param cmdLine 
-     */
-    public ClassDep(String[] cmdLine){
-	setupOptions(cmdLine);
-    }
-
-    /**
-     * Take the given argument and add it to the provided container.
-     * We make sure that each inserted package-prefix is unique. For
-     * example if we had the following packages:
-     * <ul>
-     *     <li>a.b
-     *     <li>a.bx
-     *     <li>a.b.c
-     * </ul>
-     * Looking for <code>a.b</code> should not match 
-     * <code>a.bx</code> and <code>a.b</code>, 
-     * just <code>a.b</code>.
-     * 
-     * @param arg  the package-prefix in string form
-     * @param elts container to add elements to
-     *
-     */
-    private static void add(String arg, ArrayList elts) {
-	if (!arg.endsWith(".")) {
-	    arg = arg + '.';
-        }
-	if (".".equals(arg)) {
-	    arg = null;
-        }
-	elts.add(arg);
-    }
-
-    /**
-     * Recursively traverse a given path, finding all the classes that
-     * make up the set to work with. We take into account skips,
-     * prunes, and out sets defined.
-     * <p>
-     * This implementation is here to maintain the old behavior with regard
-     * to how root directories were interpreted.
-     *
-     * @param path path to traverse down from
-     */
-    private void traverse(String path) {
-	String apath = path;
-	/*
- 	 * We append File.separator to make sure that the path
-	 * is unique for the matching that we are going to do
-	 * next. 
-	 */
-	if (!apath.startsWith(File.separator)) {
-	    apath = File.separator + apath;
-        }
-	for (int i = 0; i < prunes.size(); i++) {
-	    /*
-	     * If we are on a root path that needs to be 
-	     * pruned leave this current recursive thread.
-	     */
-	    if (apath.endsWith((String)prunes.get(i))) {
-		return;
-	}
-	}
-
-	/*
- 	 * Get the current list of files at the current directory 
-	 * we are in. If there are no files then leave this current
-	 * recursive thread.
-	 */
-	String[] files_ = new File(path).list();
-	if (files_ == null) {
-	    return;
-        }
-    outer:
-	/*
- 	 * Now, take the found list of files and iterate over them.
-	 */
-	for (int i = 0; i < files_.length; i++) {
-	    String file = files_[i];
-	    /*
-	     * Now see if we have a ".class" file.
-	     * If we do not then we lets call ourselves again.
-	     * The assumption here is that we have a directory. If it
-	     * is a class file we would have already been throw out
-	     * by the empty directory contents test above.
-	     */
-	    if (!file.endsWith(".class")) {
-		traverse(path + File.separatorChar + file);
-	    } else {
-		/*
-		 * We have a class file, so remove the ".class" from it
-		 * using the pattern:
-		 * 
-		 *     directory_name + File.Separator + filename = ".class"
-		 *
-		 * At this point the contents of the skip container follow
-		 * the pattern of:
-		 *
-		 *     "File.Separator+DirectoryPath"
-		 *
-		 * with dots converted to File.Separators
-		 */
-		file = apath + File.separatorChar +
-		       file.substring(0, file.length() - 6);
-		/*
-		 * See if there are any class files that need to be skipped.
-		 */
-		for (int j = 0; j < skips.size(); j++) {
-		    String skip = (String)skips.get(j);
-		    int k = file.indexOf(skip);
-		    if (k < 0) {
-                        continue; 
-                    }//leave this current loop.
-		    k += skip.length();
-		    /*
-		     * If we matched the entire class or if we have
-		     * a class with an inner class, skip it and go
-		     * on to the next outer loop.
-		     */
-		    if (file.length() == k || file.charAt(k) == '$') {
-			continue outer;
-		}
-		}
-		/*
-		 * things to do:
-		 * prune when outside.
-		 * handle inside when its empty.
-		 *
-		 * Now see if we have classes within our working set "in".
-		 * If so add them to our working list "classes".
-		 */
-		for (int j = 0; j < inside.size(); j++) {
-		    if (inside.get(j) == null) {
-			continue;
-                    }
-		    int k = file.indexOf(File.separatorChar +
-					 ((String)inside.get(j)).replace(
-						     '.', File.separatorChar));
-		    if (k >= 0) {
-			/*
-			 * Insert the class and make sure to replace
-			 * File.separators into dots.
-			 */
-			classes.add(file.substring(k + 1).replace(
-						   File.separatorChar, '.'));
-		    }
-		}
-	    }
-	}
-    }
-
-    /**
-     * Recursively traverse a given path, finding all the classes that make up
-     * the set of classes to work with. We take into account inroot and outroot
-     * sets, skips, and the in and out sets defined.
-     *
-     * @param path path to traverse down from
-     * @param rootPath path to the directory that serves as the root for the
-     *        class files found, any path component below the root is part of
-     *        the full qualified name of the class
-     */
-    private void traverse(String path, String rootPath) {
-	// get the current list of files at the current directory we are in. If
-	// there are no files then leave this current recursive thread.
-	String[] files_ = new File(path).list();
-	if (files_ == null) {
-	    return;
-        }
-
-	// determine the package name in File.Separators notation
-	String packageName = path.substring(rootPath.length(), path.length())
-				+ File.separatorChar;
-    outer:
-	//take the found list of files and iterate over them
-	for (int i = 0; i < files_.length; i++) {
-	    String file = files_[i];
-	    // see if we have a ".class" file. If not then we call ourselves
-	    // again, assuming it is a directory, if not the call will return.
-	    if (!file.endsWith(".class")) {
-		traverse(path + File.separatorChar + file, rootPath);
-	    } else {
-		// when we have in roots defined verify whether we are inside
-		if (!insideRoots.isEmpty()) {
-		    boolean matched = false;
-		    for (int j = 0; j < insideRoots.size(); j++) {
-			if (packageName.startsWith(
-				(String) insideRoots.get(j))) {
-			    matched = true;
-			    break;
-			}
-		    }
-		    if (!matched) {
-			continue;
-		    }
-		}
-
-		// when we have out roots and we are at this level outside we
-		// can break the recursion
-		if (!outsideRoots.isEmpty()) {
-		    for (int j = 0; j < outsideRoots.size(); j++) {
-			if (packageName.startsWith(
-				(String) outsideRoots.get(j))) {
-			    return;
-			}
-		    }
-		}
-
-		// determine the fully qualified class name, but with dots
-		// converted to File.Separators and starting with a
-		// File.Separators as well
-		String className = packageName
-		    			+ file.substring(0, file.length() - 6);
-		// see if there are any class files that need to be skipped, the
-		// skip classes are in the above notation as well
-		for (int j = 0; j < skips.size(); j++) {
-		    String skip = (String) skips.get(j);
-		    if (!className.startsWith(skip)) {
-			continue;
-		    }
-		    // if we matched the entire class or if we have a class with
-		    // an inner class, skip it and go on to the next outer loop
-		    if (className.length() == skip.length()
-			    || className.charAt(skip.length()) == '$') {
-			continue outer;
-		}
-		}
-
-		// we found a class that satisfy all the criteria, convert it
-		// to the proper notation
-		classes.add(className.substring(1).replace(File.separatorChar,
-							   '.'));
-	    }
-	}
-    }
-
-    private static class Compare implements Comparator {
-	public int compare(Object o1, Object o2) {
-	    if (o1 == null) {
-		return o2 == null ? 0 : 1;
-            }
-	    else {
-		return o2 == null ? -1 : ((Comparable) o2).compareTo(o1);
-	}
-    }
-    }
-
-    /**
-     * Method that takes the user provided switches that
-     * logically define the domain in which to look for
-     * dependencies.
-     * <p>
-     * Whether a failure has occurred during computing the dependent classes
-     * can be found out with a call to {@link #hasFailed()}.
-     *
-     * @return array containing the dependent classes found in the format as
-     * specified by the options passed in
-     */
-    public String[] compute() {
-	failed = false;
-
-	if (!newRootDirBehavior) {
-	    if (!insideRoots.isEmpty()) {
-		failed = true;
-		print("classdep.invalidoption", "-newdirbehavior", "-inroot");
-	    }
-	    if (!outsideRoots.isEmpty()) {
-		failed = true;
-		print("classdep.invalidoption", "-newdirbehavior", "-outroot");
-	    }
-	    if (failed) {
-		return new String[0];
-	    }
-	}
-
-	/* sort ins and outs, longest first */
-	Comparator c = new Compare();
-	Collections.sort(inside, c);
-	Collections.sort(outside, c);
-	Collections.sort(shows, c);
-	Collections.sort(hides, c);
-
-	/*
- 	 * Traverse the roots i.e the set of handed directories.
-	 */
-	for (int i = 0; i < roots.size(); i++) {
-	    /*
-	     * Get the classes that we want do to dependency checking on.
-	     */
-	    if (newRootDirBehavior) {
-		traverse((String)roots.get(i), (String)roots.get(i));
-	    }
-	    else {
-		traverse((String)roots.get(i));
-	    }
-	}
-        
-        // Now use ClassDepend to perform dependency computation
-        if (classpath.length() == 0) { classpath = null; }
-        try {
-            cd = ClassDepend.newInstance(classpath, null, true);
-        } catch (IOException e) {
-            e.printStackTrace();
-        }
-        Map classDependencyRelationMap = null;
-        try{
-            classDependencyRelationMap = cd.getDependencyRelationshipMap(classes, true); // get the reference to Collection<Class>
-        }catch (ClassNotFoundException e){
-            e.printStackTrace();
-        }catch (IOException e) {
-            e.printStackTrace();
-        }
-         
-        if (tells.isEmpty()){
-            // Here's where we should build the parameter list and call the filter
-            //Ready the Parameter Builder for ClassDepend
-            // .ignoreOuterParentClass(ignoreOuter) isn't implemented in ClassDepend yet.
-            CDPBuilder cdpb = new CDPBuilder();
-            ClassDependParameters cdp = cdpb.addOutsidePackagesOrClasses(addClassesRecursively(outside))
-                    .addOutsidePackagesOrClasses(skips)
-                    .addInsidePackages(addClassesRecursively(inside))
-                    .addShowPackages(addClassesRecursively(shows))
-                    .addHidePackages(addClassesRecursively(hides))
-                    .ignoreOuterParentClass(ignoreOuter)                   
-                    .excludePlatformClasses(false)
-                    .edges(edges)
-                    .build();
-            Set result = cd.filterClassDependencyRelationShipMap
-                    (classDependencyRelationMap, cdp);
-            Iterator itr = result.iterator();
-            while (itr.hasNext()) {
-                results.add(itr.next().toString());
-	}
-        }else{
-        
-            Iterator iter = tells.iterator();
-            while (iter.hasNext()){
-                String name = (String) iter.next();
-                if ( classDependencyRelationMap.containsKey(name)){
-                    ClassDependencyRelationship provider = (ClassDependencyRelationship) classDependencyRelationMap.get(name);
-                    Set dependants = provider.getDependants();
-                    if (!dependants.isEmpty()) {
-                        Iterator it = dependants.iterator();
-                        while (it.hasNext()) {
-                            ClassDependencyRelationship dependant = (ClassDependencyRelationship) it.next();
-                            if (tells.size() > 1) {
-                                print("classdep.cause", provider, dependant);
-        }
-                            else {
-                                print("classdep.cause1", dependant);
-                            }                 
-                        }
-                    }
-                }
-            }
-        }
-        // cannot change the return type or we break the API backward compatibility.
-	return (String[])results.toArray(new String[results.size()]);
-    }
-
-    /**
-     * Add all classes in Packages and subpackages recursively by appending **
-     * as per the syntax requirements of the ClassDepend API.
-     */
-    private List addClassesRecursively(List list){
-        for ( int i = 0, l = list.size() ; i < l ; i++){
-            list.set(i , list.get(i) + "**");
-        }
-        return list;
-    }
-    
-    /**
-     * Print out the usage for this utility.
-     */
-    public static void usage() {
-	print("classdep.usage", null);
-    }
-
-    /**
-     * Set the classpath to use for finding our class definitions.
-     * @param classpath 
-     */
-    public void setClassPath(String classpath) {
-	this.classpath = classpath;
-    }
-
-    /**
-     * Determines how to print out the fully qualified
-     * class names. If <code>true</code> it will use
-     * <code>File.separator</code>, else <code>.</code>'s
-     * will be used. 
-     * If not set the default is <code>false</code>.
-     * @param files 
-     */
-    public void setFiles(boolean files) {
-	this.files = files;
-    }
-
-    /**
-     * Add an entry into the set of package prefixes that
-     * are to remain hidden from processing.
-     * @param packagePrefix 
-     */
-    public void addHides(String packagePrefix) {
-	add(packagePrefix, hides);
-    }
-
-    /**
-     * Add an entry into the working set of package prefixes 
-     * that will make up the working domain space.
-     * @param packagePrefix 
-     */
-    public void addInside(String packagePrefix) {
-	add(packagePrefix, inside);
-    }
-
-    /**
-     * Determines whether to include package references
-     * that lie outside the declared set of interest.
-     * <p>
-     * If true edges will be processed as well, else
-     * they will be ignored. If not set the default
-     * will be <code>false</code>.
-     * <p>
-     * <b>Note:</b> These edge classes must included
-     * in the classpath for this utility.
-     * @param edges 
-     */
-    public void setEdges(boolean edges) {
-	this.edges = edges;
-    }
-
-    /**
-     * Add an entry into the set of package prefixes
-     * that will bypassed during dependency checking.
-     * These entries should be subsets of the contents
-     * on the inside set.
-     * @param packagePrefix 
-     */
-    public void addOutside(String packagePrefix) {
-	add(packagePrefix, outside);
-    }
-
-    /**
-     * Add an entry into the set of package prefixes
-     * that will be skipped as part of the dependency
-     * generation.
-     * <p>
-     * This method has no impact if the new behavior is effective for the
-     * interpretation of the root directories for finding class files to
-     * include for dependency checking.
-     * @param packagePrefix 
-     */
-    public void addPrune(String packagePrefix) {
-	String arg = packagePrefix;
-	if (arg.endsWith(".")) {
-	    arg = arg.substring(0, arg.length() - 1);
-        }
-	/*
-	 * Convert dots into File.separator for later usage.
-	 */
-	arg = File.separator + arg.replace('.', File.separatorChar);
-	prunes.add(arg);
-    }
-
-    /**
-     * Controls whether the behavior for finding class files in the specified
-     * directories, if any, must be based on the old behavior (the default) or
-     * the new behavior that solves some of the problems with the old behavior.
-     * @param newBehavior 
-     */
-    public void setRootDirBehavior(boolean newBehavior) {
-	newRootDirBehavior = newBehavior;
-    }
-
-    /**
-     * Adds an entry into the set of package prefixes for which classes found
-     * through the specified root directories will be considered for dependency
-     * generation.
-     * <p>
-     * Adding entries without a call to {@link #setRootDirBehavior(boolean)}
-     * with <code>true</code> as the argument will cause {@link #compute()} to
-     * fail.
-     * @param packagePrefix 
-     */
-    public void addInsideRoot(String packagePrefix) {
-	String arg = packagePrefix;
-	if (arg.endsWith(".")) {
-	    arg = arg.substring(0, arg.length() - 1);
-        }
-	/*
-	 * Convert dots into File.separator for later usage.
-	 */
-	if (arg.trim().length() == 0) {
-	    arg = File.separator;
-        }
-	else {
-            arg = File.separator + arg.replace('.', File.separatorChar) + File.separator;
-        }
-	insideRoots.add(arg);
-    }
-
-    /**
-     * Adds an entry into the set of package prefixes for which classes found
-     * through the specified root directories, and that are part of the inside
-     * root namespace, will be skipped as part of the dependency generation.
-     * <p>
-     * Adding entries without a call to {@link #setRootDirBehavior(boolean)}
-     * with <code>true</code> as the argument will cause {@link #compute()} to
-     * fail.
-     * @param packagePrefix 
-     */
-    public void addOutsideRoot(String packagePrefix) {
-	String arg = packagePrefix;
-	if (arg.endsWith(".")) {
-	    arg = arg.substring(0, arg.length() - 1);
-        }
-	/*
-	 * Convert dots into File.separator for later usage.
-	 */
-	if (arg.trim().length() == 0) {
-	    arg = File.separator;
-        }
-	else {
-            arg = File.separator + arg.replace('.', File.separatorChar) + File.separator;
-        }
-	outsideRoots.add(arg);
-    }
-
-    /**
-     * Add an entry into the set of package prefixes
-     * that we want to display.
-     * This applies only to the final output, so this
-     * set should be a subset of the inside set with
-     * edges, if that was indicated.
-     * @param packagePrefix 
-     */
-    public void addShow(String packagePrefix) {
-	add(packagePrefix, shows);
-    }
-
-    /**
-     * Add an entry into the set of classes that
-     * should be skipped during dependency generation.
-     * @param packagePrefix 
-     */
-    public void addSkip(String packagePrefix){
-	String arg = packagePrefix;
-	if (arg.endsWith(".")) {
-	    arg = arg.substring(0, arg.length() - 1);
-        }
-        /* No Longer required as ClassDepend will be passed the skips array
-	else {
-	    seen.add(Identifier.lookup(arg));
-        }
-         */
-        
-	/*
-	 * Convert dots into File.separator for later usage.
-	 */
-	arg = File.separator + arg.replace('.', File.separatorChar);
-	skips.add(arg);
-    }
-
-    /**
-     * Add an entry in to the set of classes whose dependents
-     * that lie with the inside set are listed. This in
-     * the converse of the rest of the utility and is meant
-     * more for debugging purposes.
-     * @param className 
-     */
-    public void addTells(String className) {
-	tells.add(className);
-    }
-
-    /**
-     * Add an entry into the set of directories to
-     * look under for the classes that fall within
-     * the working domain space as defined by the
-     * intersection of the following sets:
-     * inside,outside,prune,show, and hide.
-     * @param rootName 
-     */
-    public void addRoots(String rootName) {
-	if (rootName.endsWith(File.separator)) {
-	    //remove trailing File.separator
-	    rootName = rootName.substring(0, rootName.length() - 1);
-        }
-	//these are directories.
-	roots.add(rootName);
-    }
-
-    /**
-     * Add an entry into the set of classes that
-     * dependencies are going to be computed on.
-     * @param className 
-     */
-    public void addClasses(String className) {
-	classes.add(className);
-    }
-
-   /**
-     * If true classnames will be separated using
-     * File.separator, else it will use dots.
-    * @return true or false
-     */
-    public boolean getFiles() {
-	return files;
-    }
-
-    /**
-     * Accessor method for the found dependencies.
-     * @return String[] dependencies
-     */
-    public String[] getResults() {
-	String[] vals = (String[])results.toArray(new String[results.size()]);
-	Arrays.sort(vals);
-	return vals;
-    }
-
-    /**
-     * Indicates whether computing the dependent classes as result of the last
-     * call to {@link #compute()} resulted in one or more failures.
-     *
-     * @return <code>true</code> in case a failure has happened, such as a
-     * class not being found, <code>false</code> otherwise
-     */
-    public boolean hasFailed() {
-	return failed;
-    }
-
-    /**
-     * Convenience method for initializing an instance with specific
-     * command line arguments. See the description of this class
-     * for a list and description of the acceptable arguments.
-     * @param args 
-     */
-    public void setupOptions(String[] args) {
-	for (int i = 0; i < args.length ; i++ ) {
-	    String arg = args[i];
-	    if (arg.equals("-newdirbehavior")) {
-		newRootDirBehavior = true;
-	    }
-	    else if (arg.equals("-cp")) {
-		i++;
-		setClassPath(args[i]);
-	    } else if (arg.equals("-files")) {
-		setFiles(true);
-	    } else if (arg.equals("-hide")) {
-		i++;
-		addHides(args[i]);
-	    } else if (arg.equals("-in")) {
-		i++;
-		addInside(args[i]);
-	    } else if (arg.equals("-edges")) {
-		setEdges(true);
-	    } else if (arg.equals("-out")) {
-		i++;
-		addOutside(args[i]);
-	    } else if (arg.equals("-outer")) {
-		ignoreOuter = false;
-	    } else if (arg.equals("-prune")) {
-		i++;
-		addPrune(args[i]);
-	    } else if (arg.equals("-inroot")) {
-		i++;
-		addInsideRoot(args[i]);
-	    } else if (arg.equals("-outroot")) {
-		i++;
-		addOutsideRoot(args[i]);
-	    } else if (arg.equals("-show")) {
-		i++;
-		addShow(args[i]);
-	    } else if (arg.equals("-skip")) {
-		i++;
-		addSkip(args[i]);
-	    } else if (arg.equals("-tell")) {
-		i++;
-		addTells(args[i]);
-	    } else if (arg.indexOf(File.separator) >= 0) {
-		addRoots(arg);
-	    } else if (arg.startsWith("-")) {
-		usage();
-	    } else {
-		addClasses(arg);
-	    }
-	}
-    }
-
-    private static ResourceBundle resources;
-    private static boolean resinit = false;
-
-    /**
-     * Get the strings from our resource localization bundle.
-     */
-    private static synchronized String getString(String key) {
-	if (!resinit) {
-	    resinit = true;
-	    try {
-		resources = ResourceBundle.getBundle
-		    ("com.sun.jini.tool.resources.classdep");
-	    } catch (MissingResourceException e) {
-		e.printStackTrace();
-	    }
-	}
-	if (resources != null) {
-	    try {
-		return resources.getString(key);
-	    } catch (MissingResourceException e) {
-	    }
-	}
-	return null;
-    }
-
-    /**
-     * Print out string according to resourceBundle format.
-     */
-    private static void print(String key, Object val) {
-	String fmt = getString(key);
-	if (fmt == null) {
-	    fmt = "no text found: \"" + key + "\" {0}";
-        }
-	System.err.println(MessageFormat.format(fmt, new Object[]{val}));
-    }
-
-    /**
-     * Print out string according to resourceBundle format.
-     */
-    private static void print(String key, Object val1, Object val2) {
-	String fmt = getString(key);
-	if (fmt == null) {
-	    fmt = "no text found: \"" + key + "\" {0} {1}";
-        }
-	System.err.println(MessageFormat.format(fmt,
-						new Object[]{val1, val2}));
-    }
-
-    /**
-     * Command line interface for generating the list of classes that
-     * a set of classes depends upon. See the description of this class
-     * for a list and description of the acceptable arguments.
-     */
-    public static void main(String[] args) {
-	if (args.length == 0) {
-	    usage();
-	    return;
-	}
-	ClassDep dep = new ClassDep();
-	//boolean files = false;
-	dep.setupOptions(args);
-	String[] vals = dep.compute();
-       
-	for (int i = 0; i < vals.length; i++) {
-	    if (dep.getFiles()) {
-                System.out.println(vals[i].replace('.', File.separatorChar) + ".class");
-            }
-	    else {
-		System.out.println(vals[i]);
-	}
-    }
-		    }
-	}
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ * 
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package com.sun.jini.tool;
+
+import com.sun.jini.tool.classdepend.ClassDepend;
+import com.sun.jini.tool.classdepend.ClassDependParameters;
+import com.sun.jini.tool.classdepend.ClassDependParameters.CDPBuilder;
+import com.sun.jini.tool.classdepend.ClassDependencyRelationship;
+import java.text.MessageFormat;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Collections;
+import java.util.Comparator;
+import java.util.MissingResourceException;
+import java.util.ResourceBundle;
+import java.util.SortedSet;
+import java.util.TreeSet;
+import java.io.File;
+import java.io.IOException;
+import java.util.Iterator;
+import java.util.List;
+import java.util.Map;
+import java.util.Set;
+
+/**
+ * Tool used to analyze a set of classes and determine on what other classes
+ * they directly or indirectly depend. Typically this tool is used to
+ * compute the necessary and sufficient set of classes to include in a JAR
+ * file, for use in the class path of a client or service, or for use in the
+ * codebase of a client or service. The tool starts with a set of "root"
+ * classes and recursively computes a dependency graph, finding all of the
+ * classes referenced directly by the root classes, finding all of the
+ * classes referenced in turn by those classes, and so on, until no new
+ * classes are found or until classes that are not of interest are
+ * found. The normal output of the tool is a list of all of the classes in
+ * the dependency graph. The output from this command can be used as input
+ * to the <code>jar</code> tool, to create a JAR file containing precisely
+ * those classes.
+ * <p>
+ * The following items are discussed below:
+ * <ul>
+ * <li><a href="#running">Running the Tool</a>
+ * <li><a href="#processing">Processing Options</a>
+ * <li><a href="#output">Output Options and Arguments</a>
+ * <li><a href="#examples">Examples</a>
+ * </ul>
+ *
+ * <a name="running"></a>
+ * <h3>Running the Tool</h3>
+ *
+ * The command line for running the tool has the form:
+ * <blockquote><pre>
+ * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
+ *      -cp <var><b>input_classpath</b></var> <var><b>processing_options</b></var> <var><b>output_options</b></var>
+ * </pre></blockquote>
+ * <p>
+ * where <var><b>install_dir</b></var> is the directory where the Apache River release
+ * is installed.
+ * Note that the options for this tool can be specified in any order, and
+ * can be intermixed.
+ *
+ * <p>
+ * The <code>-cp</code> class path value,
+ * <var><b>input_classpath</b></var>,
+ * is an argument to the <code>ClassDep</code> tool itself and should
+ * include all of the classes that might need to be included in the
+ * dependency analysis. Typically this will include all of your application
+ * classes, classes from the Apache River release, and any other classes on which
+ * your classes might depend. It is safe to include more classes than are
+ * actually necessary (since the purpose of this tool is, after all, to
+ * determine which subset of these classes is actually necessary), but it is
+ * not necessary to include any classes that are part of the Java 2 SDK.
+ * The class path should be in the form of a list of directories or JAR
+ * files, delimited by a colon (":") on UNIX platforms and a semi-colon
+ * (";") on Microsoft Windows platforms. The order of locations in the path
+ * does not matter. If you use JAR files, any <code>Class-Path</code>
+ * manifest entries in those JAR files are ignored, so you must include the
+ * values of those manifest entries explicitly in the path, or errors may
+ * result. For example, if you include <code>jini-ext.jar</code> then you
+ * should explicitly include <code>jini-core.jar</code> as well, because
+ * <code>jini-core.jar</code> is in the <code>Class-Path</code> manifest
+ * entry of <code>jini-ext.jar</code>.</dd>
+ *
+ * <a name="processing"></a>
+ * <h3>Processing Options</h3>
+ *
+ * The root classes of the dependency graph can be specified by any
+ * combination of individual classes and directories of classes. Each of
+ * these options can be used any number of times, and are illustrated in the
+ * <a href="#examples">Examples</a> section of this page.
+ * <p>
+ * In general, you only need to specify concrete classes as roots, not
+ * interface types. When analyzing classes for the class path of an
+ * application, you typically need to include the top-level class (the one
+ * with the <code>main</code> method). When analyzing classes for the
+ * codebase of a service, you typically need to include the top-level proxy
+ * classes used by the service, any trust verifier classes for those
+ * proxies, and any custom entry classes used by the service for lookup
+ * service attributes. Also when analyzing classes for the codebase of a
+ * service, if the service's proxy can return leases, registration objects,
+ * or other proxies, or if your service generates events, and if those
+ * objects are only referenced by interface type in the top-level proxy, not
+ * by concrete class, then you also need to include the concrete classes of
+ * those other objects. In all cases, you typically need to include any stub
+ * classes that you generated with the <code>rmic</code> tool.
+ * <p>
+ * <dl>
+ * <dt><b><var>class</var></b>
+ * <dd>This option specifies the fully qualified name of an individual class
+ * to include as a root of the dependency graph. This option can be
+ * specified zero or more times. Each class you specify with this option
+ * needs to be in a package that is defined to be "inside" the graph (as
+ * described further below).</dd>
+ * <p>
+ * <dt><b><var>directory</var></b>
+ * <dd>This option specifies the root directory of a tree of compiled class
+ * files, all of which are to be included as roots of the dependency
+ * graph. This option can be specified zero or more times. The directory
+ * must be one of the directories specified in
+ * <var><b>input_classpath</b></var>,
+ * or a subdirectory of one, and must contain at least one filename
+ * separator character. Each class in the tree needs to be in a package that
+ * is defined to be "inside" the graph (as described further below).
+ * <p>
+ * <dt><b><var>directory</var></b>
+ * <dd>This option specifies the root directory of a tree of compiled class
+ * files that are considered as root for the dependency checking. This option
+ * can be specified zero or more times. The actual behavior depends on whether
+ * the <code>-newdirbehavior</code> options is specified. The directory must
+ * contain at least one filename separator character and be one of the
+ * directories specified in <var><b>input_classpath</b></var>, or when the old
+ * behavior is effective it can be a subdirectory of one of the directories on
+ * the <var><b>input_classpath</b></var>. Each class in the tree needs to be in
+ * a package that is defined to be "inside" the graph (as described further
+ * below).
+ * <p>
+ * When the <code>-newdirbehavior</code> options is set the <code>-inroot</code>
+ * and <code>-outroot</code> options can be used to include/exclude particular
+ * subtrees from the potential set of roots. When the old behavior is effective
+ * all classes are considered as root, but can be excluded through the
+ * <code>-prune</code> option.
+ * <p>
+ * <dl>
+ * <dt><b><code>-inroot</code> <var>package-prefix</var></b> (only valid with
+ * <code>-newdirbehavior</code>)
+ * <dd>Specifies a package namespace to include when selecting roots from the
+ * directory trees. Any classes found in this package or a subpackage of it are
+ * considered as root for the dependency checking, unless they are explicitly
+ * excluded using <code>-out</code>, <code>-skip</code> or <code>-outroot</code>
+ * options. If not specified all found classes are considered roots. This option
+ * can be specified zero or more times. Note that the argument to
+ * <code>-inroot</code> is a package namespace (delimited by "."), not a
+ * directory.</dd>
+ * </dl>
+ * <p>
+ * <dl>
+ * <dt><b><code>-outroot</code> <var>package-prefix</var></b> (only valid with
+ * <code>-newdirbehavior</code>)
+ * <dd>Specifies a package namespace to exclude when selecting roots from the
+ * directory trees. Within the directory trees as specified by the
+ * <code>rootdir</code> element, any classes that are in the given package or a
+ * subpackage of it are not treated as roots. This option can be specified zero
+ * or more times. Note that the argument to <code>-outroot</code> is a package
+ * namespace (delimited by "."), not a directory.</dd>
+ * </dl>
+ * <p>
+ * <dl>
+ * <dt><b><code>-prune</code> <var>package-prefix</var></b> (old behavior only)
+ * <dd>Specifies a package namespace to exclude when selecting roots from
+ * directory trees. Within the directory trees, any classes that are in the
+ * given package or a subpackage of it are not treated as roots. Note that
+ * this option has <i>no</i> effect on whether the classes in question end
+ * up "inside" or "outside" the dependency graph (as defined further below);
+ * it simply controls their use as roots. This option can be specified zero
+ * or more times. Note that the argument to <code>-prune</code> is a package
+ * namespace (delimited by "."), not a directory.</dd>
+ * </dl>
+ * <p>
+ * The <code>-skip</code> option (described further below) can be used to
+ * exclude specific classes from the set of roots.
+ * </dd>
+ * </dl>
+ * <p>
+ * Starting with the root classes, a dependency graph is constructed by
+ * examining the compiled class file for a class, finding all of the classes
+ * it references, and then in turn examining those classes.  The extent of
+ * the graph is determined by which packages are defined to be "inside" the
+ * graph and which are defined to be "outside" the graph.  If a referenced
+ * class is in a package that is defined to be outside the graph, that class
+ * is not included in the graph, and none of classes that it references are
+ * examined. All of the root classes must be in packages that are defined to
+ * be "inside" the graph.
+ * <p>
+ * The inside and outside packages are specified by using the following
+ * options. Each of these options may be specified zero or more times.  Some
+ * variations are illustrated in the <a href="#examples">Examples</a> section
+ * of this page.
+ * <p>
+ * <dl>
+ * <dt><b><code>-in</code> <var>package-prefix</var></b>
+ * <dd>Specifies a namespace of "inside" packages. Any classes in this
+ * package or a subpackage of it are included in the dependency graph (and
+ * hence are to be included in your JAR file), unless they are explicitly
+ * excluded using <code>-out</code> or <code>-skip</code> options. This
+ * option can be specified zero or more times. If no <code>-in</code>
+ * options are specified, the default is that all packages are considered to
+ * be inside packages.  Note that the argument to <code>-in</code> is a
+ * namespace, so none of its subpackages need to be specified as an argument
+ * to <code>-in</code>.
+ * <p>
+ * If you use this option, you will likely need to use it multiple
+ * times. For example, if your application classes are in the
+ * <code>com.corp.foo</code> namespace, and you also use some classes in the
+ * <code>com.sun.jini</code> and <code>net.jini</code> namespaces, then you
+ * might specify:
+ * <pre>-in com.corp.foo -in com.sun.jini -in net.jini</pre>
+ * </dd>
+ * <p>
+ * <dt><b><code>-out</code> <var>package-prefix</var></b>
+ * <dd>Specifies a namespace of "outside" packages. Any classes in this
+ * package or a subpackage of it are excluded from the dependency graph (and
+ * hence are to be excluded from your JAR file). This option can be
+ * specified zero or more times.  If you specify <code>-in</code> options,
+ * then each <code>-out</code> namespace should be a subspace of some
+ * <code>-in</code> namespace. Note that the argument to <code>-out</code>
+ * is a namespace, so none of its subpackages need to be specified as an
+ * argument to <code>-out</code>.
+ * <p>
+ * If you use this option, you will likely need to use it multiple
+ * times. For example, if you do not specify any <code>-in</code> options,
+ * then all packages are considered inside the graph, including packages
+ * defined in the Java 2 SDK that you typically want to exclude, so you
+ * might exclude them by specifying:
+ * <pre>-out java -out javax</pre>
+ * As another example, if you have specified <code>-in com.corp.foo</code>
+ * but you don't want to include any of the classes in the
+ * <code>com.corp.foo.test</code> or <code>com.corp.foo.qa</code> namespaces
+ * in the dependency graph, then you would specify:
+ * <pre>-out com.corp.foo.test -out com.corp.foo.qa</pre>
+ * </dd>
+ * <p>
+ * <dt><b><code>-skip</code> <var>class</var></b>
+ * <dd>Specifies the fully qualified name of a specific class to exclude
+ * from the dependency graph. This option allows an individual class to be
+ * considered "outside" without requiring the entire package it is defined
+ * in to be considered outside.  This option can be specified zero or more
+ * times.
+ * </dd> 
+ * <p>
+ * <dt><b><code>-outer</code></b>
+ * <dd>By default, if a static nested class is included in the dependency
+ * graph, all references from that static nested class to its immediate
+ * lexically enclosing class are ignored (except when the static nested class
+ * extends its outer class), to avoid inadvertent inclusion of the enclosing
+ * class. (The default is chosen this way because the compiled class file of a
+ * static nested class always contains a reference to the immediate lexically
+ * enclosing class.) This option causes all such references to be considered
+ * rather than ignored.  Note that this option is needed very infrequently.</dd>
+ * </dl>
+ * <p>
+ * <dt><b><code>-newdirbehavior</code></b>
+ * <dd>This option causes the utility to select classes, to serve as root for
+ * the dependency checking, from the directory argument based on the
+ * <code>-inroot</code> and <code>-outroot</code> options specified. When
+ * this option is set subdirectories of the specified directory are no longer
+ * considered as root for finding classes. When this option is not set, the
+ * default, the utility maintains the old behavior with respect to the semantics
+ * for the directories passed in and the <code>-prune</code> option must be
+ * used. You are advised to set this option as there are some edge cases for
+ * which the old behavior won't work as expected, especially when no
+ * <code>-in</code> options are set.</dd>
+ * </dl>
+ *
+ * <a name="output"></a>
+ * <h3>Output Options and Arguments</h3>
+ * 
+ * The following options and arguments determine the content and format of
+ * the output produced by this tool. These options do not affect the
+ * dependency graph computation, only the information displayed in the
+ * output as a result of the computation. Most of these options may be
+ * specified multiple times. Some variations are illustrated in the
+ * <a href="#examples">Examples</a> section of this page.
+ * <dl>
+ * <dt><b><code>-edges</code></b>
+ * <dd>By default, the classes which are included in the dependency graph
+ * are displayed in the output. This option specifies that instead, the
+ * classes which are excluded from the dependency graph, but which are
+ * directly referenced by classes in the dependency graph, should be
+ * displayed in the output. These classes form the outside "edges" of the
+ * dependency graph.
+ * <p>
+ * For example, you might exclude classes from the Java 2 SDK from the
+ * dependency graph because you don't want to include them in your JAR file,
+ * but you might be interested in knowing which classes from the Java 2 SDK
+ * are referenced directly by the classes in your JAR file. The
+ * <code>-edges</code> option can be used to display this information.
+ * </dd>
+ * <p>
+ * <dt><b><code>-show</code> <var>package-prefix</var></b>
+ * <dd>Displays the classes that are in the specified package or a
+ * subpackage of it. This option can be specified zero or more times. If no
+ * <code>-show</code> options are specified, the default is that all classes
+ * in the dependency graph are displayed (or all edge classes, if
+ * <code>-edges</code> is specified). Note that the argument to
+ * <code>-show</code> is a namespace, so none of its subpackages need to be
+ * specified as an argument to <code>-show</code>.
+ * <p>
+ * For example, to determine which classes from the Java 2 SDK your
+ * application depends on, you might not specify any <code>-in</code>
+ * options, but limit the output by specifying:
+ * <pre>-show java -show javax</pre></dd>
+ * <p>
+ * <dt><b><code>-hide</code> <var>package-prefix</var></b>
+ * <dd>Specifies a namespace of packages which should not be displayed. Any
+ * classes in this package or a subpackage of it are excluded from the
+ * output. This option can be specified zero or more times. If you specify
+ * <code>-show</code> options, then each <code>-hide</code> namespace should
+ * be a subspace of some <code>-show</code> namespace. Note that the
+ * argument to <code>-hide</code> is a namespace, so none of its subpackages
+ * need to be specified as an argument to <code>-hide</code>.
+ * <p>
+ * For example, to determine which non-core classes from the
+ * <code>net.jini</code> namespace you use, you might specify:
+ * <pre>-show net.jini -hide net.jini.core</pre></dd>
+ * <p>
+ * <dt><b><code>-files</code></b>
+ * <dd>By default, fully qualified class names are displayed, with package
+ * names delimited by ".". This option causes the output to be in filename
+ * format instead, with package names delimited by filename separators and
+ * with ".class" appended. For example, using this option on Microsoft
+ * Windows platforms would produce output in the form of
+ * <code>com\corp\foo\Bar.class</code> instead of
+ * <code>com.corp.foo.Bar</code>. This option should be used to generate
+ * output suitable as input to the <code>jar</code> tool.
+ * <p>
+ * For more information on the <code>jar</code> tool, see:
+ * <ul>
+ * <li><a href="http://java.sun.com/j2se/1.4/docs/tooldocs/solaris/jar.html">
+ * http://java.sun.com/j2se/1.4/docs/tooldocs/solaris/jar.html</a>
+ * <li><a href="http://java.sun.com/j2se/1.4/docs/tooldocs/windows/jar.html">
+ * http://java.sun.com/j2se/1.4/docs/tooldocs/windows/jar.html</a>
+ * <li><a href="http://java.sun.com/j2se/1.4/docs/guide/jar/jar.html">
+ * http://java.sun.com/j2se/1.4/docs/guide/jar/jar.html</a>
+ * </ul>
+ * </dd>
+ * <p>
+ * <dt><b><code>-tell</code> <var>class</var></b>
+ * <dd>Specifies the fully qualified name of a class for which dependency
+ * information is desired. This option causes the tool to display
+ * information about every class in the dependency graph that references the
+ * specified class. This information is sent to the error stream of the
+ * tool, not to the normal output stream.  This option can be specified zero
+ * or more times. If this option is used, all other output options are
+ * ignored, and the normal class output is not produced. This option is
+ * useful for debugging.
+ * </dd>
+ * </dl>
+ * 
+ * <a name="examples"></a>
+ * <h3>Examples</h3>
+ *
+ * (The examples in this section assume you ran the Apache River release installer
+ * with an "Install Set" selection that created the top-level
+ * <code>classes</code> directory. Alternatively, if you have compiled from
+ * the source code, substitute <code>source/classes</code> for
+ * <code>classes</code> in the examples.)
+ * <p>
+ * The following example computes the classes required for a codebase JAR
+ * file, starting with a smart proxy class and a stub class as roots, and
+ * displays them in filename format. (A more complete example would include
+ * additional roots for leases, registrations, events, and lookup service
+ * attributes, and would exclude platform classes such as those in
+ * <code>jsk-platform.jar</code>.)
+ * <p>
+ * <blockquote><pre>
+ * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
+ *      -cp <var><b>install_dir</b></var>/classes \
+ *      com.sun.jini.reggie.RegistrarProxy com.sun.jini.reggie.RegistrarImpl_Stub \
+ *      -in com.sun.jini -in net.jini \
+ *      -files
+ * </pre></blockquote>
+ * <p>
+ * The following example computes the classes required for a classpath JAR
+ * file, starting with all of the classes in a directory as roots, and
+ * displays them in class name format. (A more complete example would exclude
+ * platform classes such as those in <code>jsk-platform.jar</code>.)
+ * <p>
+ * <blockquote><pre>
+ * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
+ *      -cp <var><b>install_dir</b></var>/classes \
+ *      <var><b>install_dir</b></var>/classes/com/sun/jini/reggie \
+ *      -in com.sun.jini -in net.jini
+ * </pre></blockquote>
+ * <p>
+ * The following example computes the <code>com.sun.jini</code> classes used
+ * by a service implementation, and displays the <code>net.jini</code>
+ * classes that are immediately referenced by those classes.
+ * <p>
+ * <blockquote><pre>
+ * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
+ *      -cp <var><b>install_dir</b></var>/classes \
+ *      com.sun.jini.reggie.RegistrarImpl \
+ *      -in com.sun.jini \
+ *      -edges \
+ *      -show net.jini
+ * </pre></blockquote>
+ * <p>
+ * The following example computes all of the classes used by a service
+ * implementation that are not part of the Java 2 SDK, and displays the
+ * classes that directly reference the class <code>java.awt.Image</code>.
+ * <p>
+ * <blockquote><pre>
+ * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
+ *      -cp <var><b>install_dir</b></var>/classes \
+ *      com.sun.jini.reggie.RegistrarImpl \
+ *      -out java -out javax \
+ *      -tell java.awt.Image
+ * </pre></blockquote>
+ * <p>
+ * The following example computes all of the classes to include in
+ * <code>jini-ext.jar</code> and displays them in filename format.  Note
+ * that both <code>-out</code> and <code>-prune</code> options are needed
+ * for the <code>net.jini.core</code> namespace; <code>-out</code> to
+ * exclude classes from the dependency graph, and <code>-prune</code> to
+ * prevent classes from being used as roots.
+ * <p>
+ * <blockquote><pre>
+ * java -jar <var><b>install_dir</b></var>/lib/classdep.jar \
+ *      -cp <var><b>install_dir</b></var>/classes \
+ *      -in net.jini -out net.jini.core -in com.sun.jini \
+ *      <var><b>install_dir</b></var>/classes/net/jini -prune net.jini.core \
+ *      -files
+ * </pre></blockquote>
+ *
+ * @author Sun Microsystems, Inc.
+ */
+public class ClassDep {
+    private ClassDepend cd;
+     
+    /**
+     * If true class names are printed using
+     * the system's File.separator, else the 
+     * fully qualified class name is printed.
+     */
+    private boolean files = false;
+    /**
+     * Set of paths to find class definitions in order to determine 
+     * dependencies.
+     */
+    private String classpath = "";
+    /**
+     * Flag to determine whether there is interest
+     * in dependencies that go outside the set of 
+     * interested classes. If false then outside,
+     * references are ignored, if true they are noted.
+     * i.e, if looking only under <code>net.jini.core.lease</code>
+     * a reference to a class in <code>net.jini</code> is found it
+     * will be noted if the flag is set to true, else
+     * it will be ignored. <p>
+     * <b>Note:</b> these edge case dependencies must be
+     * included in the classpath in order to find their
+     * definitions.
+     */
+    private  boolean edges = false;
+    /**
+     * Static inner classes have a dependency on their outer
+     * parent class. Because the parent class may be really
+     * big and may pull other classes along with it we allow the
+     * choice to ignore the parent or not. If the flag is set to
+     * true we pull in the parent class. If it is false we don't
+     * look at the parent. The default is is to not include the 
+     * parent. <p>
+     * <b>Note:</b> This is an optimization for those who plan
+     * on doing work with the output of this utility. It does
+     * not impact this utility, but the work done on its 
+     * generated output  may have an impact. 
+     * 
+     * This will have to be implemented in ClassDepend note the above
+     * description conflicts with the variable name.
+     */
+    private  boolean ignoreOuter = true;
+    /**
+     * Package set that we have interest to work in.
+     */
+    private  final ArrayList inside  = new ArrayList();
+    /**
+     * Package set to not work with. This is useful if
+     * there is a subpackage that needs to be ignored.
+     */
+    private  final ArrayList outside = new ArrayList();
+    /**
+     * Class set to look at for dependencies. These are
+     * fully qualified names, ie, net.jini.core.lease.Lease.
+     * This is a subset of the values in
+     * <code>inside</code>.
+     */
+    private  final ArrayList classes = new ArrayList();
+    /**
+     * Set of directories to find dependencies in.
+     */
+    private  final ArrayList roots   = new ArrayList();
+    /**
+     * Set of packages to skip over in the processing of dependencies.
+     * This can be used in conjunction with <em>-out</em> option.
+     */
+    private  final ArrayList prunes  = new ArrayList();
+    /**
+     * Indicates whether the root directories specified for finding classes
+     * for dependency checking must be traversed in the 'old' way, or that the
+     * new behavior must be effective.
+     */
+    private boolean newRootDirBehavior;
+    /**
+     * Set of packages to include when classes are found through the specified
+     * root directories.
+     */
+    private  final ArrayList insideRoots  = new ArrayList();
+    /**
+     * Set of packages to exclude when classes are found through the specified
+     * root directories.
+     */
+    private  final ArrayList outsideRoots  = new ArrayList();
+    /**
+     * Set of classes to skip over in the processing of dependencies.
+     */
+    private  final ArrayList skips   = new ArrayList();
+    /**
+     * Given a specific fully qualified classes, what other classes
+     * in the roots list depend on it. This is more for debugging
+     * purposes rather then normal day to day usage.
+     */
+    private  final ArrayList tells   = new ArrayList();
+    /**
+     * Only display found dependencies that fall under the provided
+     * <code>roots</code> subset.
+     */
+    private  final ArrayList shows   = new ArrayList();
+    /**
+     * Suppress display of found dependencies that are under
+     * the provided package prefixes subset.
+     */
+    private  final ArrayList hides   = new ArrayList();
+    /**
+     * Container for found dependency classes.
+     */
+    private final SortedSet results = new TreeSet();
+
+    /**
+     * Indicates whether a failure has been encountered during deep dependency
+     * checking.
+     */
+    private boolean failed;
+
+    /**
+     * No argument constructor. The user must fill in the
+     * appropriate fields prior to asking for the processing
+     * of dependencies.
+     */
+    public ClassDep() {
+    }
+
+    /**
+     * Constructor that takes command line arguments and fills in the
+     * appropriate fields. See the description of this class
+     * for a list and description of the acceptable arguments.
+     * @param cmdLine 
+     */
+    public ClassDep(String[] cmdLine){
+	setupOptions(cmdLine);
+    }
+
+    /**
+     * Take the given argument and add it to the provided container.
+     * We make sure that each inserted package-prefix is unique. For
+     * example if we had the following packages:
+     * <ul>
+     *     <li>a.b
+     *     <li>a.bx
+     *     <li>a.b.c
+     * </ul>
+     * Looking for <code>a.b</code> should not match 
+     * <code>a.bx</code> and <code>a.b</code>, 
+     * just <code>a.b</code>.
+     * 
+     * @param arg  the package-prefix in string form
+     * @param elts container to add elements to
+     *
+     */
+    private static void add(String arg, ArrayList elts) {
+	if (!arg.endsWith(".")) {
+	    arg = arg + '.';
+        }
+	if (".".equals(arg)) {
+	    arg = null;
+        }
+	elts.add(arg);
+    }
+
+    /**
+     * Recursively traverse a given path, finding all the classes that
+     * make up the set to work with. We take into account skips,
+     * prunes, and out sets defined.
+     * <p>
+     * This implementation is here to maintain the old behavior with regard
+     * to how root directories were interpreted.
+     *
+     * @param path path to traverse down from
+     */
+    private void traverse(String path) {
+	String apath = path;
+	/*
+ 	 * We append File.separator to make sure that the path
+	 * is unique for the matching that we are going to do
+	 * next. 
+	 */
+	if (!apath.startsWith(File.separator)) {
+	    apath = File.separator + apath;
+        }
+	for (int i = 0; i < prunes.size(); i++) {
+	    /*
+	     * If we are on a root path that needs to be 
+	     * pruned leave this current recursive thread.
+	     */
+	    if (apath.endsWith((String)prunes.get(i))) {
+		return;
+	}
+	}
+
+	/*
+ 	 * Get the current list of files at the current directory 
+	 * we are in. If there are no files then leave this current
+	 * recursive thread.
+	 */
+	String[] files_ = new File(path).list();
+	if (files_ == null) {
+	    return;
+        }
+    outer:
+	/*
+ 	 * Now, take the found list of files and iterate over them.
+	 */
+	for (int i = 0; i < files_.length; i++) {
+	    String file = files_[i];
+	    /*
+	     * Now see if we have a ".class" file.
+	     * If we do not then we lets call ourselves again.
+	     * The assumption here is that we have a directory. If it
+	     * is a class file we would have already been throw out
+	     * by the empty directory contents test above.
+	     */
+	    if (!file.endsWith(".class")) {
+		traverse(path + File.separatorChar + file);
+	    } else {
+		/*
+		 * We have a class file, so remove the ".class" from it
+		 * using the pattern:
+		 * 
+		 *     directory_name + File.Separator + filename = ".class"
+		 *
+		 * At this point the contents of the skip container follow
+		 * the pattern of:
+		 *
+		 *     "File.Separator+DirectoryPath"
+		 *
+		 * with dots converted to File.Separators
+		 */
+		file = apath + File.separatorChar +
+		       file.substring(0, file.length() - 6);
+		/*
+		 * See if there are any class files that need to be skipped.
+		 */
+		for (int j = 0; j < skips.size(); j++) {
+		    String skip = (String)skips.get(j);
+		    int k = file.indexOf(skip);
+		    if (k < 0) {
+                        continue; 
+                    }//leave this current loop.
+		    k += skip.length();
+		    /*
+		     * If we matched the entire class or if we have
+		     * a class with an inner class, skip it and go
+		     * on to the next outer loop.
+		     */
+		    if (file.length() == k || file.charAt(k) == '$') {
+			continue outer;
+		}
+		}
+		/*
+		 * things to do:
+		 * prune when outside.
+		 * handle inside when its empty.
+		 *
+		 * Now see if we have classes within our working set "in".
+		 * If so add them to our working list "classes".
+		 */
+		for (int j = 0; j < inside.size(); j++) {
+		    if (inside.get(j) == null) {
+			continue;
+                    }
+		    int k = file.indexOf(File.separatorChar +
+					 ((String)inside.get(j)).replace(
+						     '.', File.separatorChar));
+		    if (k >= 0) {
+			/*
+			 * Insert the class and make sure to replace
+			 * File.separators into dots.
+			 */
+			classes.add(file.substring(k + 1).replace(
+						   File.separatorChar, '.'));
+		    }
+		}
+	    }
+	}
+    }
+
+    /**
+     * Recursively traverse a given path, finding all the classes that make up
+     * the set of classes to work with. We take into account inroot and outroot
+     * sets, skips, and the in and out sets defined.
+     *
+     * @param path path to traverse down from
+     * @param rootPath path to the directory that serves as the root for the
+     *        class files found, any path component below the root is part of
+     *        the full qualified name of the class
+     */
+    private void traverse(String path, String rootPath) {
+	// get the current list of files at the current directory we are in. If
+	// there are no files then leave this current recursive thread.
+	String[] files_ = new File(path).list();
+	if (files_ == null) {
+	    return;
+        }
+
+	// determine the package name in File.Separators notation
+	String packageName = path.substring(rootPath.length(), path.length())
+				+ File.separatorChar;
+    outer:
+	//take the found list of files and iterate over them
+	for (int i = 0; i < files_.length; i++) {
+	    String file = files_[i];
+	    // see if we have a ".class" file. If not then we call ourselves
+	    // again, assuming it is a directory, if not the call will return.
+	    if (!file.endsWith(".class")) {
+		traverse(path + File.separatorChar + file, rootPath);
+	    } else {
+		// when we have in roots defined verify whether we are inside
+		if (!insideRoots.isEmpty()) {
+		    boolean matched = false;
+		    for (int j = 0; j < insideRoots.size(); j++) {
+			if (packageName.startsWith(
+				(String) insideRoots.get(j))) {
+			    matched = true;
+			    break;
+			}
+		    }
+		    if (!matched) {
+			continue;
+		    }
+		}
+
+		// when we have out roots and we are at this level outside we
+		// can break the recursion
+		if (!outsideRoots.isEmpty()) {
+		    for (int j = 0; j < outsideRoots.size(); j++) {
+			if (packageName.startsWith(
+				(String) outsideRoots.get(j))) {
+			    return;
+			}
+		    }
+		}
+
+		// determine the fully qualified class name, but with dots
+		// converted to File.Separators and starting with a
+		// File.Separators as well
+		String className = packageName
+		    			+ file.substring(0, file.length() - 6);
+		// see if there are any class files that need to be skipped, the
+		// skip classes are in the above notation as well
+		for (int j = 0; j < skips.size(); j++) {
+		    String skip = (String) skips.get(j);
+		    if (!className.startsWith(skip)) {
+			continue;
+		    }
+		    // if we matched the entire class or if we have a class with
+		    // an inner class, skip it and go on to the next outer loop
+		    if (className.length() == skip.length()
+			    || className.charAt(skip.length()) == '$') {
+			continue outer;
+		}
+		}
+
+		// we found a class that satisfy all the criteria, convert it
+		// to the proper notation
+		classes.add(className.substring(1).replace(File.separatorChar,
+							   '.'));
+	    }
+	}
+    }
+
+    private static class Compare implements Comparator {
+	public int compare(Object o1, Object o2) {
+	    if (o1 == null) {
+		return o2 == null ? 0 : 1;
+            }
+	    else {
+		return o2 == null ? -1 : ((Comparable) o2).compareTo(o1);
+	}
+    }
+    }
+
+    /**
+     * Method that takes the user provided switches that
+     * logically define the domain in which to look for
+     * dependencies.
+     * <p>
+     * Whether a failure has occurred during computing the dependent classes
+     * can be found out with a call to {@link #hasFailed()}.
+     *
+     * @return array containing the dependent classes found in the format as
+     * specified by the options passed in
+     */
+    public String[] compute() {
+	failed = false;
+
+	if (!newRootDirBehavior) {

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