You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@airavata.apache.org by ra...@apache.org on 2014/08/28 17:45:18 UTC
[2/4] git commit: Merge branch 'master' of
https://git-wip-us.apache.org/repos/asf/airavata
Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/6c4471ad
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/6c4471ad
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/6c4471ad
Branch: refs/heads/master
Commit: 6c4471ada3585716426ff3ed1d8712b53e9b7126
Parents: b3775ec 36d0b76
Author: raminder <ra...@apache.org>
Authored: Mon Aug 25 12:00:17 2014 -0400
Committer: raminder <ra...@apache.org>
Committed: Mon Aug 25 12:00:17 2014 -0400
----------------------------------------------------------------------
.../java-client-samples/pom.xml | 29 +-
.../client/samples/CancelExperiments.java | 2 -
.../client/samples/CreateLaunchExperiment.java | 145 +-
.../samples/CreateLaunchExperimentUS3.java | 80 +-
.../samples/TestCreateLaunchExperiment.java | 56 +-
.../tools/RegisterSampleApplications.java | 70 +-
modules/airavata-client/pom.xml | 5 -
.../airavata/client/AiravataAPIFactory.java | 24 +-
.../apache/airavata/client/AiravataClient.java | 256 +-
.../apache/airavata/client/api/AiravataAPI.java | 5 +-
.../airavata/client/api/AiravataManager.java | 6 +-
.../org/apache/airavata/client/api/BaseAPI.java | 3 +-
.../client/api/CredentialStoreManager.java | 22 +-
.../airavata/client/api/ExecutionManager.java | 172 +-
.../airavata/client/api/ProvenanceManager.java | 938 +++---
.../client/impl/AiravataManagerImpl.java | 264 +-
.../client/impl/ApplicationManagerImpl.java | 525 ++--
.../client/impl/CredentialStoreManagerImpl.java | 50 +-
.../client/impl/ExecutionManagerImpl.java | 366 ++-
.../client/impl/PasswordCallBackImpl.java | 78 +-
.../client/impl/ProvenanceManagerImpl.java | 1273 ++++----
.../client/impl/WorkflowManagerImpl.java | 365 +--
.../client/tools/DocumentCreatorNew.java | 34 +-
.../client/tools/PeriodicExecutorThread.java | 1 -
.../client/airavata/AiravataClientTest.java | 16 +-
.../catalog/data/util/AppCatalogJPAUtils.java | 1 +
.../main/resources/airavata-client.properties | 2 +-
.../main/resources/airavata-server.properties | 2 +-
modules/distribution/client/java/pom.xml | 10 -
.../java/src/main/assembly/bin-assembly.xml | 2 -
modules/distribution/server/pom.xml | 10 -
.../server/src/main/assembly/bin-assembly.xml | 2 -
modules/gfac/airavata-gfac-service/pom.xml | 25 +
.../airavata/gfac/server/GfacServerHandler.java | 27 +-
.../airavata/gfac/client/util/Initialize.java | 9 +-
.../gfac/bes/provider/impl/BESProvider.java | 88 +-
modules/gfac/gfac-core/pom.xml | 10 -
.../apache/airavata/gfac/GFacConfiguration.java | 16 +-
.../org/apache/airavata/gfac/Scheduler.java | 10 -
.../airavata/gfac/core/cpi/BetterGfacImpl.java | 34 +-
.../apache/airavata/gfac/core/cpi/GFacImpl.java | 1356 +++++----
.../gfac/core/handler/AbstractHandler.java | 4 +-
.../handler/AbstractRecoverableHandler.java | 4 +-
.../core/handler/AppDescriptorCheckHandler.java | 5 -
.../gfac/core/provider/AbstractProvider.java | 3 +-
.../provider/AbstractRecoverableProvider.java | 3 +-
.../airavata/gfac/core/utils/GFacUtils.java | 303 +-
.../apache/airavata/job/GFacConfigXmlTest.java | 10 +-
modules/gfac/gfac-ec2/pom.xml | 5 -
.../apache/airavata/gfac/ec2/EC2Provider.java | 18 +-
.../airavata/gfac/ec2/EC2ProviderTest.java | 6 +-
.../impl/GramProviderTestWithMyProxyAuth.java | 6 +-
.../gsissh/provider/impl/GSISSHProvider.java | 5 +-
.../impl/GSISSHProviderTestWithMyProxyAuth.java | 6 +-
.../gfac/services/impl/LocalProviderTest.java | 2 +-
modules/gfac/gfac-monitor/pom.xml | 10 -
.../handlers/GridPullMonitorHandler.java | 5 +-
.../handlers/GridPushMonitorHandler.java | 4 +-
.../monitor/impl/pull/qstat/HPCPullMonitor.java | 75 +-
.../gfac/ssh/provider/impl/SSHProvider.java | 3 +-
.../services/impl/BigRed2TestWithSSHAuth.java | 6 +-
.../impl/SSHProviderTestWithSSHAuth.java | 6 +-
.../integration/AbstractIntegrationTest.java | 22 +-
.../apache/airavata/integration/BaseCaseIT.java | 96 +-
.../airavata/integration/DataRetrievalIT.java | 24 +-
.../airavata/integration/ForEachCaseIT.java | 134 +-
.../integration/PasswordCallbackImpl.java | 78 +-
.../SingleAppIntegrationTestBase.java | 2 +-
.../WorkflowIntegrationTestBase.java | 341 +--
.../integration/WorkflowSamplesCaseIT.java | 162 +-
.../server/OrchestratorServerHandler.java | 38 +-
.../client/OrchestratorClientFactoryTest.java | 26 +-
.../orchestrator/client/util/Initialize.java | 7 +-
modules/orchestrator/orchestrator-core/pom.xml | 10 +-
.../core/OrchestratorConfiguration.java | 12 -
.../core/context/OrchestratorContext.java | 11 -
.../core/impl/GFACEmbeddedJobSubmitter.java | 6 +-
.../core/impl/GFACServiceJobSubmitter.java | 2 -
.../core/utils/OrchestratorUtils.java | 25 +-
.../cpi/impl/AbstractOrchestrator.java | 98 +-
.../cpi/impl/SimpleOrchestratorImpl.java | 10 +-
.../orchestrator/core/BaseOrchestratorTest.java | 38 +-
.../orchestrator/core/NewOrchestratorTest.java | 21 -
.../orchestrator/core/util/Initialize.java | 9 +-
modules/registry/airavata-jpa-registry/pom.xml | 5 -
.../registry/jpa/JPAResourceAccessor.java | 49 -
.../persistance/registry/jpa/ResourceUtils.java | 2 +-
.../registry/jpa/impl/AiravataJPARegistry.java | 2838 ------------------
...avataRegistryConnectionDataProviderImpl.java | 42 -
.../jpa/resources/ExperimentDataRetriever.java | 543 ----
.../registry/jpa/resources/UserResource.java | 7 +-
.../registry/jpa/AbstractResourceTest.java | 2 +-
.../registry/jpa/util/Initialize.java | 9 +-
modules/registry/pom.xml | 1 -
modules/registry/registry-api/pom.xml | 80 -
.../registry/api/AiravataExperiment.java | 73 -
.../registry/api/AiravataRegistry2.java | 65 -
.../AiravataRegistryConnectionDataProvider.java | 29 -
.../registry/api/AiravataRegistryFactory.java | 140 -
.../registry/api/AiravataSubRegistry.java | 97 -
.../airavata/registry/api/AiravataUser.java | 48 -
.../registry/api/ConfigurationRegistry.java | 59 -
.../registry/api/CredentialRegistry.java | 69 -
.../airavata/registry/api/DataRegistry.java | 50 -
.../registry/api/DescriptorRegistry.java | 74 -
.../airavata/registry/api/ExecutionErrors.java | 33 -
.../apache/airavata/registry/api/Gateway.java | 47 -
.../registry/api/OrchestratorRegistry.java | 120 -
.../airavata/registry/api/PasswordCallback.java | 25 -
.../airavata/registry/api/ProjectsRegistry.java | 50 -
.../registry/api/ProvenanceRegistry.java | 528 ----
.../registry/api/PublishedWorkflowRegistry.java | 45 -
.../airavata/registry/api/ResourceMetadata.java | 70 -
.../airavata/registry/api/UserRegistry.java | 39 -
.../registry/api/UserWorkflowRegistry.java | 43 -
.../airavata/registry/api/WorkspaceProject.java | 95 -
.../AiravataRegUninitializedException.java | 32 -
.../DeploymentDescriptionRetrieveException.java | 35 -
.../GatewayNotRegisteredException.java | 32 -
.../HostDescriptionRetrieveException.java | 33 -
.../RegAPIVersionIncompatibleException.java | 39 -
.../RegAccessorInstantiateException.java | 32 -
.../exception/RegAccessorInvalidException.java | 32 -
.../exception/RegAccessorNotFoundException.java | 32 -
.../RegAccessorUndefinedException.java | 40 -
.../registry/api/exception/RegException.java | 39 -
.../exception/RegistrySettingsException.java | 37 -
.../RegistrySettingsLoadException.java | 38 -
.../ServiceDescriptionRetrieveException.java | 35 -
.../UnimplementedRegOperationException.java | 32 -
.../UnknownRegConnectionDataException.java | 36 -
.../UnspecifiedRegistrySettingsException.java | 30 -
.../DescriptorAlreadyExistsException.java | 34 -
.../DescriptorDoesNotExistsException.java | 34 -
.../gateway/InsufficientDataException.java | 34 -
.../gateway/MalformedDescriptorException.java | 34 -
...PublishedWorkflowAlreadyExistsException.java | 34 -
...PublishedWorkflowDoesNotExistsException.java | 34 -
.../ApplicationJobAlreadyExistsException.java | 34 -
.../ApplicationJobDoesNotExistsException.java | 34 -
.../ExperimentAlreadyExistsException.java | 34 -
.../ExperimentDoesNotExistsException.java | 34 -
.../worker/ExperimentLazyLoadedException.java | 34 -
.../InvalidApplicationJobIDException.java | 34 -
.../UserWorkflowAlreadyExistsException.java | 34 -
.../UserWorkflowDoesNotExistsException.java | 34 -
.../WorkflowInstanceAlreadyExistsException.java | 34 -
.../WorkflowInstanceDoesNotExistsException.java | 34 -
...kflowInstanceNodeAlreadyExistsException.java | 34 -
...kflowInstanceNodeDoesNotExistsException.java | 34 -
.../WorkspaceProjectAlreadyExistsException.java | 34 -
.../WorkspaceProjectDoesNotExistsException.java | 34 -
.../registry/api/impl/ExperimentDataImpl.java | 221 --
.../api/impl/WorkflowExecutionDataImpl.java | 182 --
.../api/orchestrator/OrchestratorData.java | 113 -
.../orchestrator/impl/OrchestratorDataImpl.java | 112 -
.../registry/api/util/RegistryConstants.java | 36 -
.../registry/api/util/RegistrySettings.java | 127 -
.../registry/api/util/RegistryUtils.java | 124 -
.../registry/api/util/WebServiceUtil.java | 202 --
.../registry/api/workflow/ApplicationJob.java | 295 --
.../workflow/ApplicationJobExecutionError.java | 67 -
.../api/workflow/ApplicationJobStatusData.java | 63 -
.../registry/api/workflow/ExecutionError.java | 103 -
.../registry/api/workflow/ExperimentData.java | 123 -
.../api/workflow/ExperimentExecutionError.java | 40 -
.../api/workflow/ExperimentMetadata.java | 49 -
.../registry/api/workflow/ExperimentName.java | 49 -
.../registry/api/workflow/ExperimentUser.java | 48 -
.../registry/api/workflow/InputData.java | 34 -
.../api/workflow/NodeExecutionData.java | 236 --
.../api/workflow/NodeExecutionError.java | 58 -
.../api/workflow/NodeExecutionStatus.java | 78 -
.../registry/api/workflow/OutputData.java | 34 -
.../api/workflow/WorkflowExecution.java | 69 -
.../api/workflow/WorkflowExecutionData.java | 118 -
.../api/workflow/WorkflowExecutionError.java | 49 -
.../api/workflow/WorkflowExecutionStatus.java | 128 -
.../registry/api/workflow/WorkflowIOData.java | 58 -
.../api/workflow/WorkflowInstanceNode.java | 67 -
.../workflow/WorkflowInstanceNodePortData.java | 89 -
.../api/workflow/WorkflowNodeGramData.java | 83 -
.../api/workflow/WorkflowNodeIOData.java | 114 -
.../registry/api/workflow/WorkflowNodeType.java | 84 -
.../api/workflow/WorkflowRunTimeData.java | 90 -
modules/registry/registry-cpi/pom.xml | 5 +
.../registry/cpi/utils/RegistrySettings.java | 127 +
modules/test-suite/pom.xml | 6 -
modules/workflow-model/workflow-engine/pom.xml | 12 -
.../WorkflowInterpreterConfiguration.java | 2 -
modules/ws-messenger/messagebox/pom.xml | 5 -
modules/ws-messenger/messagebroker/pom.xml | 5 -
modules/xbaya-gui/pom.xml | 5 -
.../xbaya/registry/PasswordCallbackImpl.java | 78 +-
.../ui/experiment/LaunchApplicationWindow.java | 400 +++
.../airavata/xbaya/ui/menues/RunMenuItem.java | 9 +-
pom.xml | 2 +-
samples/java-client/experiment/pom.xml | 22 -
tools/registry-tool/pom.xml | 5 -
199 files changed, 4487 insertions(+), 14200 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/airavata/blob/6c4471ad/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/CreateLaunchExperimentUS3.java
----------------------------------------------------------------------