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Posted to dev@taverna.apache.org by "Stian Soiland-Reyes (JIRA)" <ji...@apache.org> on 2018/02/08 13:55:00 UTC
[jira] [Updated] (TAVERNA-938) Run cwlrunner (nested CWL workflows)
[ https://issues.apache.org/jira/browse/TAVERNA-938?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Stian Soiland-Reyes updated TAVERNA-938:
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Labels: cwl docker gsoc2016 gsoc2018 java python (was: cwl docker gsoc2016 java python)
> Run cwlrunner (nested CWL workflows)
> ------------------------------------
>
> Key: TAVERNA-938
> URL: https://issues.apache.org/jira/browse/TAVERNA-938
> Project: Apache Taverna
> Issue Type: Bug
> Components: Taverna Common Activities
> Reporter: Stian Soiland-Reyes
> Priority: Major
> Labels: cwl, docker, gsoc2016, gsoc2018, java, python
>
> Executing cwlrunner from Taverna (configured with a CWL workflow rather than a CWL tool) could be an interesting thing - that would be a way to include a CWL workflow as a nested workflow in Taverna.
> The CWL workflow can be added directly to the Workflow Bundle as-is and extracted to a temporary folder before running cwl-runner.
> This would also be an intermediate approach towards TAVERNA-878 as you can execute any cwl tool by generating a one-step cwl workflow and run cwlrunner.
> However then the user would need to have cwlrunner AND Taverna installed, so it would be more of an intermediate solution.
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