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Posted to issues@flink.apache.org by "Jiayi Liao (Jira)" <ji...@apache.org> on 2020/05/04 14:53:00 UTC
[jira] [Updated] (FLINK-17453) KyroSerializer throws
IndexOutOfBoundsException type java.util.PriorityQueue
[ https://issues.apache.org/jira/browse/FLINK-17453?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Jiayi Liao updated FLINK-17453:
-------------------------------
Attachment: udaf
> KyroSerializer throws IndexOutOfBoundsException type java.util.PriorityQueue
> ----------------------------------------------------------------------------
>
> Key: FLINK-17453
> URL: https://issues.apache.org/jira/browse/FLINK-17453
> Project: Flink
> Issue Type: Bug
> Components: API / Type Serialization System, Table SQL / Runtime
> Affects Versions: 1.9.0
> Reporter: Jiayi Liao
> Priority: Major
> Attachments: udaf
>
>
> We're using SQL UDAF with a {{PriorityQueue}} as {{Accumulator}}, and when recovering from checkpoint, the error occurs.
> {code:java}
> 2020-04-28 22:28:18,659 INFO org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer - IndexOutOfBoundsException type java.util.PriorityQueue source data is: [2, 0, 0, 0, 0, 0, 0, 0].
> 2020-04-28 22:28:18,660 INFO org.apache.flink.runtime.taskmanager.Task - Attempting to fail task externally GroupWindowAggregate -> Calc_select_live_id__2 -> SinkConversionToTupl -> Map -> Filter (37/40)- execution # 0 (4636858426452f0a437d2f6d9564f34d).
> 2020-04-28 22:28:18,660 INFO org.apache.flink.runtime.taskmanager.Task - GroupWindowAggregate -> Calc_select_live_id__2 -> SinkConversionToTupl -> Map -> Filter (37/40)- execution # 0 (4636858426452f0a437d2f6d9564f34d) switched from RUNNING to FAILED.
> org.apache.flink.streaming.runtime.tasks.AsynchronousException: Caught exception while processing timer.
> at org.apache.flink.streaming.runtime.tasks.StreamTask$StreamTaskAsyncExceptionHandler.handleAsyncException(StreamTask.java:967)
> at org.apache.flink.streaming.runtime.tasks.StreamTask.handleAsyncException(StreamTask.java:941)
> at org.apache.flink.streaming.runtime.tasks.SystemProcessingTimeService$TriggerTask.run(SystemProcessingTimeService.java:285)
> at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
> at java.util.concurrent.FutureTask.run(FutureTask.java:266)
> at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
> at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: TimerException{com.esotericsoftware.kryo.KryoException: java.io.EOFException: No more bytes left.}
> at org.apache.flink.streaming.runtime.tasks.SystemProcessingTimeService$TriggerTask.run(SystemProcessingTimeService.java:284)
> ... 7 more
> Caused by: com.esotericsoftware.kryo.KryoException: java.io.EOFException: No more bytes left.
> at org.apache.flink.api.java.typeutils.runtime.NoFetchingInput.require(NoFetchingInput.java:79)
> at com.esotericsoftware.kryo.io.Input.readVarInt(Input.java:355)
> at com.esotericsoftware.kryo.util.DefaultClassResolver.readClass(DefaultClassResolver.java:109)
> at com.esotericsoftware.kryo.Kryo.readClass(Kryo.java:641)
> at org.apache.flink.api.java.typeutils.runtime.kryo.KryoSerializer.deserialize(KryoSerializer.java:361)
> at org.apache.flink.util.InstantiationUtil.deserializeFromByteArray(InstantiationUtil.java:536)
> at org.apache.flink.table.dataformat.BinaryGeneric.getJavaObjectFromBinaryGeneric(BinaryGeneric.java:86)
> at org.apache.flink.table.dataformat.DataFormatConverters$GenericConverter.toExternalImpl(DataFormatConverters.java:628)
> at org.apache.flink.table.dataformat.DataFormatConverters$GenericConverter.toExternalImpl(DataFormatConverters.java:633)
> at org.apache.flink.table.dataformat.DataFormatConverters$DataFormatConverter.toExternal(DataFormatConverters.java:320)
> at org.apache.flink.table.dataformat.DataFormatConverters$PojoConverter.toExternalImpl(DataFormatConverters.java:1293)
> at org.apache.flink.table.dataformat.DataFormatConverters$PojoConverter.toExternalImpl(DataFormatConverters.java:1257)
> at org.apache.flink.table.dataformat.DataFormatConverters$DataFormatConverter.toExternal(DataFormatConverters.java:302)
> at GroupingWindowAggsHandler$57.setAccumulators(Unknown Source)
> at org.apache.flink.table.runtime.operators.window.internal.GeneralWindowProcessFunction.getWindowAggregationResult(GeneralWindowProcessFunction.java:73)
> at org.apache.flink.table.runtime.operators.window.WindowOperator.emitWindowResult(WindowOperator.java:434)
> at org.apache.flink.table.runtime.operators.window.WindowOperator.onProcessingTime(WindowOperator.java:422)
> at org.apache.flink.streaming.api.operators.InternalTimerServiceImpl.onProcessingTime(InternalTimerServiceImpl.java:260)
> at org.apache.flink.streaming.runtime.tasks.SystemProcessingTimeService$TriggerTask.run(SystemProcessingTimeService.java:281)
> ... 7 more
> Caused by: java.io.EOFException: No more bytes left.
> ... 26 more
> {code}
> The problem happens when restoring from checkpoint. (I don't know what's inside the {{PriorityQueue}} because it's already on production environment). According to the logs, it seems that it's because the {{KryoSerializer}} cannot successfully deserialize the {{PriorityQueue}} instance and throws an {{IndexOutOfBoundsException}}.
> The UDAF accumulator is:
> {code:java}
> public static class Acc {
> public PriorityQueue<Map.Entry<String, Long>> queue;
> }
> @Override
> public Acc createAccumulator() {
> Acc accumulator = new Acc();
> Comparator<Map.Entry<String, Long>> comparator = new Comparator<Map.Entry<String, Long>>() {
> @Override
> public int compare(Map.Entry<String, Long> o1, Map.Entry<String, Long> o2) {
> return o1.getValue().compareTo(o2.getValue()) == 0 ? o1.getKey().compareTo(o2.getKey()) :
> o1.getValue().compareTo(o2.getValue());
> }
> };
> PriorityQueue<Map.Entry<String, Long>> pq = new PriorityQueue<>(comparator);
> accumulator.queue = pq;
> return accumulator;
> }
> {code}
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