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Posted to commits@taverna.apache.org by bu...@apache.org on 2015/02/05 12:53:47 UTC
svn commit: r939080 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/introduction/works-with.html
Author: buildbot
Date: Thu Feb 5 11:53:47 2015
New Revision: 939080
Log:
Staging update by buildbot for taverna
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
websites/staging/taverna/trunk/content/introduction/works-with.html
Propchange: websites/staging/taverna/trunk/cgi-bin/
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@@ -1 +1 @@
-1657534
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Propchange: websites/staging/taverna/trunk/content/
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--- cms:source-revision (original)
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Modified: websites/staging/taverna/trunk/content/introduction/works-with.html
==============================================================================
--- websites/staging/taverna/trunk/content/introduction/works-with.html (original)
+++ websites/staging/taverna/trunk/content/introduction/works-with.html Thu Feb 5 11:53:47 2015
@@ -4,7 +4,7 @@
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
- <title>Apache Taverna - </title>
+ <title>Apache Taverna - Works withâ¦</title>
<meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
<meta property="og:image" content="/img/taverna-logo-145x134.png" />
@@ -31,7 +31,7 @@
"@context" : "http://schema.org",
"@type" : ["CreativeWork"],
"@id": "",
- "name" : "",
+ "name" : "Works withâ¦",
"publisher" : {
"@type" : "Organization",
"url" : "http://www.apache.org/",
@@ -128,7 +128,7 @@
<div id="page" class="container">
- <h1></h1>
+ <h1>Works withâ¦</h1>
<div class="alert alert-info" role="alert"><p><span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span>
Taverna is transitioning to the Apache Incubator.
@@ -140,20 +140,66 @@ Instead it shows <a class="alert-link" h
<div id="content"><p>Taverna directly interfaces with a range of software tools and systems.
Currently Taverna works with the following:</p>
<ul>
-<li><a href="http://www.biomart.org/"><img alt="alt text" src="/img/biomart.gif" /></a></li>
-<li><a href="http://www.biomart.org/" target="_blank"><img src="/pages/wp-content/uploads/2010/03/biomart.gif" alt="BioMart" width="61" height="19" /></a><br /></li>
-<li><a href="/introduction/works-with/biomart"> Biomart</a> </li></li>
-<li><a href="http://sourceforge.net/p/soaplab/wiki/Home/" target="_blank"><img src="/pages/wp-content/uploads/2010/03/Soaplab.png" alt="SoapLab" width="33" height="25" /></a><br /></li>
-<li><a href="/introduction/works-with/soaplab/">SoapLab</a></li></li>
-<li><a href="/documentation/taverna-plugins/taverna-2-x-plugins/#sadi_plugin"><img src="/pages/wp-content/uploads/2011/03/sadi-header-small.png" alt="SADI" /></a><br /></li>
-<li><a href="/introduction/works-with/sadi/"> SADI</a></li></li>
-<li><li><a href="http://www.r-project.org/" target="_blank"><img src="/pages/wp-content/uploads/2010/03/Rshell.png" alt="RShell" width="29" height="21" /></a><br /></li>
-<li><a href="/introduction/works-with/r/">R</a></li></li>
-<li><li><a href="http://www.bioconductor.org/" target="_blank"><img src="/pages/wp-content/uploads/2013/07/logo_bioconductor.gif" alt="Bioconductor" width="130" height="39" /></a><br /></li>
-<li><a href="/introduction/works-with/bioconductor/">Bioconductor</a></li>
- = A number of <a href="/documentation/taverna-plugins/taverna-2-x-plugins/">third party plugins</a></li>
-</ul></li>
-</ul></div>
+<li><a href="http://www.biomart.org/" target="_blank">
+ <img src="/img/biomart.gif" alt="BioMart" width="61" height="19" /></a> <br />
+<a href="#biomart">Biomart</a></li>
+<li><a href="http://sourceforge.net/p/soaplab/wiki/Home/" target="_blank">
+ <img src="/img/Soaplab.png" alt="SoapLab" width="33" height="25" /></a> <br />
+<a href="#soaplab">SoapLab</a></a></li>
+<li><a href="/documentation/taverna-plugins/taverna-2-x-plugins/#sadi_plugin">
+ <img src="/pages/wp-content/uploads/2011/03/sadi-header-small.png" alt="SADI" /></a> <br />
+<a href="#sadi">SADI</a></a></li>
+<li><a href="http://www.r-project.org/" target="_blank">
+ <img src="/img/Rshell.png" alt="RShell" width="29" height="21" /></a> <br />
+<a href="#r">R</a></a> </li>
+<li><a href="http://www.bioconductor.org/" target="_blank">
+ <img src="/img/logo_bioconductor.gif" alt="Bioconductor" width="130" height="39" /></a> <br />
+<a href="#bioconductor">Bioconductor</a></a></li>
+<li>A number of <a href="/documentation/taverna-plugins/taverna-2-x-plugins/">third party plugins</a></li>
+</ul>
+<p><a name="biomart"></a></p>
+<h2 id="biomart">Biomart</h2>
+<ul>
+<li><a href="http://www.biomart.org/" target="_blank">
+ <img src="/img/biomart.gif" alt="BioMart" width="61" height="19" ></a> </li>
+</ul>
+<p>The <a href="http://www.biomart.org/">Biomart system</a> is a flexible data warehouse aimed at complex interlinked biological data sets.
+It enables the retrieval of large amounts of genomic data e.g. from Ensembl and Sanger, as well as Uniprot,
+ MSD datasets and many more.
+The <a href="http://dev.mygrid.org.uk/wiki/display/taverna/Biomart">Biomart service</a> is one of the default Taverna services.</p>
+<p><a name="soaplab"></a></p>
+<h2 id="soaplab">SoapLab</h2>
+<ul>
+<li><a href="http://sourceforge.net/p/soaplab/wiki/Home/" target="_blank">
+ <img src="/img/Soaplab.png" alt="SoapLab" width="33" height="25" ></a> </li>
+</ul>
+<p><a href="http://sourceforge.net/p/soaplab/wiki/Home/">SoapLab</a> services are command line applications, wrapped as SOAP services, and served from a Soaplab server.
+Soaplab is especially well suited for applications with well described input and output parameters
+(such as EMBOSS sequence analysis)</p>
+<p><a name="sadi"></a></p>
+<h2 id="sadi">SADI</h2>
+<ul>
+<li><a href="/documentation/taverna-plugins/sadi_plugin">
+ <img src="/img/sadi-header-small.png" alt="SADI" ></a> <br />
+Semantic Web services described using the SADI framework</li>
+</ul>
+<p><a name="r"></a></p>
+<h2 id="r">R</h2>
+<ul>
+<li><a href="http://www.r-project.org/" target="_blank">
+ <img src="/img/Rshell.png" alt="RShell" width="29" height="21" ></a></li>
+</ul>
+<p><a href="http://www.r-project.org/">R</a> is a popular scripting language oriented towards statistical computing.
+The <a href="http://dev.mygrid.org.uk/wiki/display/taverna23/Rshell">Rshell</a> service in Taverna allows your workflow to include services that run R scripts on an
+ R installation.</p>
+<p><a name="bioconductor"></a></p>
+<h2 id="bioconductor">Bioconductor</h2>
+<ul>
+<li><a href="http://www.bioconductor.org/" target="_blank">
+ <img src="/img/logo_bioconductor.gif" alt="Bioconductor" width="130" height="39" ></a><br /></li>
+</ul>
+<p><a href="http://www.bioconductor.org/">Bioconductor</a> provides tools for the analysis and comprehension of high-throughput genomic data.
+Bioconductor uses the R statistical programming language, and is open source and open development</p></div>
</div>