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Posted to issues@mxnet.apache.org by GitBox <gi...@apache.org> on 2020/12/17 16:24:47 UTC
[GitHub] [incubator-mxnet] leezu opened a new issue #19690: oneDNN 2 missing headerfiles
leezu opened a new issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690
https://github.com/apache/incubator-mxnet/pull/19667 breaks Horovod (cf https://github.com/horovod/horovod/pull/2530) as some header files are missing in the pip wheel:`/usr/local/lib/python3.6/dist-packages/mxnet/include/mkldnn/oneapi/dnnl/dnnl.hpp:23:10: fatal error: oneapi/dnnl/dnnl_config.h: No such file or directory`
cc @bartekkuncer
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[GitHub] [incubator-mxnet] leezu commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-752636115
@bartekkuncer looks like the `dnnl_config.h` is included in the wrong directory. It should be in `oneapi/dnnl/dnnl_config.h` at least horovod build fails with `usr/local/lib/python3.6/dist-packages/mxnet/include/mkldnn/oneapi/dnnl/dnnl.hpp:23:10: fatal error: oneapi/dnnl/dnnl_config.h: No such file or directory #include "oneapi/dnnl/dnnl_config.h"`)
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[GitHub] [incubator-mxnet] bartekkuncer commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
bartekkuncer commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-754046194
> It looks like there are still more issues with the CD. Horovod still fails with
>
> ```
> �[0m�[91m /usr/local/lib/python3.6/dist-packages/mxnet/include/mkldnn/oneapi/dnnl/dnnl.hpp:23:10: fatal error: oneapi/dnnl/dnnl_config.h: No such file or directory
> �[0m�[91m #include "oneapi/dnnl/dnnl_config.h"
> �[0m�[91m ^~~~~~~~~~~~~~~~~~~~~~~~~~~
> �[0m�[91m compilation terminated.
> �[0m�[91m horovod/mxnet/CMakeFiles/mxnet.dir/build.make:758: recipe for target 'horovod/mxnet/CMakeFiles/mxnet.dir/mpi_ops.cc.o' failed
> ```
Yes, I saw that. https://github.com/apache/incubator-mxnet/pull/19726 should fix the issue.
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[GitHub] [incubator-mxnet] bartekkuncer commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
bartekkuncer commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-749007656
> Horovod now fails with
>
> ```
> �[0m�[91m In file included from /tmp/pip-req-build-bhade3mm/horovod/mxnet/mpi_ops.h:24:0,
> from /tmp/pip-req-build-bhade3mm/horovod/mxnet/mpi_ops.cc:21:
> /usr/local/lib/python3.6/dist-packages/mxnet/include/mxnet/ndarray.h:41:10: fatal error: mkldnn.hpp: No such file or directory
> �[0m�[91m #include <mkldnn.hpp>
> �[0m�[91m ^~~~~~~~~~~~
> �[0m�[91m compilation terminated.
> �[0m�[91m horovod/mxnet/CMakeFiles/mxnet.dir/build.make:758: recipe for target 'horovod/mxnet/CMakeFiles/mxnet.dir/mpi_ops.cc.o' failed
> ```
Yes, I saw that, working on the fix.
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[GitHub] [incubator-mxnet] szha commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
szha commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-748176237
@bartekkuncer I recommend the following for verification:
- Download a wheel with the correct headers (e.g. the 20201214 one that @sxjscience mentioend) and one without (the ones after 1214)
- Unzip them and examine the header content and see where the headers should be.
- Correct the toolts/pip/setup.py and use the wheel build scripts to build correct wheel.
- Verify if the headers are in the right location in the resulting wheel.
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[GitHub] [incubator-mxnet] leezu commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-752637355
The files included in are
```
mxnet/include/mkldnn
mxnet/include/mkldnn/mkldnn_version.h
mxnet/include/mkldnn/dnnl_debug.h
mxnet/include/mkldnn/mkldnn_debug.h
mxnet/include/mkldnn/dnnl_ocl.h
mxnet/include/mkldnn/dnnl_sycl.h
mxnet/include/mkldnn/dnnl_ocl.hpp
mxnet/include/mkldnn/mkldnn_types.h
mxnet/include/mkldnn/dnnl_version.h
mxnet/include/mkldnn/oneapi
mxnet/include/mkldnn/oneapi/dnnl
mxnet/include/mkldnn/oneapi/dnnl/dnnl_debug.h
mxnet/include/mkldnn/oneapi/dnnl/dnnl_ocl.h
mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl.h
mxnet/include/mkldnn/oneapi/dnnl/dnnl_ocl.hpp
mxnet/include/mkldnn/oneapi/dnnl/dnnl_types.h
mxnet/include/mkldnn/oneapi/dnnl/dnnl.hpp
mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl_types.h
mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool_iface.hpp
mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool.hpp
mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl.hpp
mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool.h
mxnet/include/mkldnn/oneapi/dnnl/dnnl.h
mxnet/include/mkldnn/mkldnn_config.h
mxnet/include/mkldnn/dnnl_types.h
mxnet/include/mkldnn/dnnl.hpp
mxnet/include/mkldnn/dnnl_config.h
mxnet/include/mkldnn/mkldnn.hpp
mxnet/include/mkldnn/mkldnn_dnnl_mangling.h
mxnet/include/mkldnn/dnnl_sycl_types.h
mxnet/include/mkldnn/dnnl_threadpool_iface.hpp
mxnet/include/mkldnn/dnnl_threadpool.hpp
mxnet/include/mkldnn/dnnl_sycl.hpp
mxnet/include/mkldnn/dnnl_threadpool.h
mxnet/include/mkldnn/mkldnn.h
mxnet/include/mkldnn/dnnl.h
```
I think we may need to update https://github.com/apache/incubator-mxnet/blob/3c5beb3596b6bc01f77bc7ddd14ed90221c31950/cd/mxnet_lib/static/Jenkins_pipeline.groovy#L36 to ensure that the config files are stashed correctly on the CD
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[GitHub] [incubator-mxnet] leezu closed issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu closed issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690
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[GitHub] [incubator-mxnet] sxjscience commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
sxjscience commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-748174182
@bartekkuncer For me, I met this error when trying to install horovod (you may change the cuda version):
```bash
python3 -m pip install -U --pre "mxnet-cu102==2.0.0b20201217" -f https://dist.mxnet.io/python
HOROVOD_GPU_OPERATIONS=NCCL HOROVOD_WITHOUT_GLOO=1 HOROVOD_WITH_MPI=1 HOROVOD_WITH_MXNET=1 HOROVOD_WITHOUT_PYTORCH=1 HOROVOD_WITHOUT_TENSORFLOW=1 python3 -m pip install --no-cache-dir horovod
```
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[GitHub] [incubator-mxnet] sxjscience commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
sxjscience commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-747882704
I've met this error too. @bartekkuncer Is it possible to add the header to pip wheel? Also ping @szha
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[GitHub] [incubator-mxnet] bartekkuncer edited a comment on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
bartekkuncer edited a comment on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-753866603
> The files included in are
>
> ```
> mxnet/include/mkldnn
> mxnet/include/mkldnn/mkldnn_version.h
> mxnet/include/mkldnn/dnnl_debug.h
> mxnet/include/mkldnn/mkldnn_debug.h
> mxnet/include/mkldnn/dnnl_ocl.h
> mxnet/include/mkldnn/dnnl_sycl.h
> mxnet/include/mkldnn/dnnl_ocl.hpp
> mxnet/include/mkldnn/mkldnn_types.h
> mxnet/include/mkldnn/dnnl_version.h
> mxnet/include/mkldnn/oneapi
> mxnet/include/mkldnn/oneapi/dnnl
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_debug.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_ocl.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_ocl.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_types.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl_types.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool_iface.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl.h
> mxnet/include/mkldnn/mkldnn_config.h
> mxnet/include/mkldnn/dnnl_types.h
> mxnet/include/mkldnn/dnnl.hpp
> mxnet/include/mkldnn/dnnl_config.h
> mxnet/include/mkldnn/mkldnn.hpp
> mxnet/include/mkldnn/mkldnn_dnnl_mangling.h
> mxnet/include/mkldnn/dnnl_sycl_types.h
> mxnet/include/mkldnn/dnnl_threadpool_iface.hpp
> mxnet/include/mkldnn/dnnl_threadpool.hpp
> mxnet/include/mkldnn/dnnl_sycl.hpp
> mxnet/include/mkldnn/dnnl_threadpool.h
> mxnet/include/mkldnn/mkldnn.h
> mxnet/include/mkldnn/dnnl.h
> ```
>
> I think we may need to update
>
> https://github.com/apache/incubator-mxnet/blob/3c5beb3596b6bc01f77bc7ddd14ed90221c31950/cd/mxnet_lib/static/Jenkins_pipeline.groovy#L36
>
> to ensure that the config files are stashed correctly on the CD
Thanks @leezu . I changed it in CI but must have overlooked it in CD.
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[GitHub] [incubator-mxnet] leezu commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-748261762
Thanks @bartekkuncer! I opened https://github.com/apache/incubator-mxnet/pull/19694 as weekend has started in your timezone
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[GitHub] [incubator-mxnet] leezu commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-747548497
Related code on MXNet side is at https://github.com/apache/incubator-mxnet/blob/91503f71e17fca9151779503fc9f5edefe26f2ef/tools/pip/setup.py#L148-L150
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[GitHub] [incubator-mxnet] bartekkuncer commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
bartekkuncer commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-749610413
@leezu I think this PR https://github.com/apache/incubator-mxnet/pull/19706 should fix the problem.
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[GitHub] [incubator-mxnet] leezu commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-755414239
Thank you @bartekkuncer!
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[GitHub] [incubator-mxnet] sxjscience commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
sxjscience commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-747886114
In terms of the wheel, I think the last wheel that works is 20201214.
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[GitHub] [incubator-mxnet] leezu commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-749008036
Thanks @bartekkuncer!
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[GitHub] [incubator-mxnet] szha commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
szha commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-752806688
we might also consider making it robust in setup.py by asserting the existence of these header files instead of only include when available.
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[GitHub] [incubator-mxnet] bartekkuncer commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
bartekkuncer commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-748077395
@leezu I believe that changing L149 to: `shutil.copytree(os.path.join(CURRENT_DIR, 'mxnet-build/3rdparty/mkldnn/include/oneapi/dnnl'),` fixes the issue but as I am not familiar with horovod I do not know how to check if the fix works. Can you provide me with a way to reproduce the issue?
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[GitHub] [incubator-mxnet] leezu commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-754019516
It looks like there are still more issues with the CD. Horovod still fails with
```
[0m[91m /usr/local/lib/python3.6/dist-packages/mxnet/include/mkldnn/oneapi/dnnl/dnnl.hpp:23:10: fatal error: oneapi/dnnl/dnnl_config.h: No such file or directory
[0m[91m #include "oneapi/dnnl/dnnl_config.h"
[0m[91m ^~~~~~~~~~~~~~~~~~~~~~~~~~~
[0m[91m compilation terminated.
[0m[91m horovod/mxnet/CMakeFiles/mxnet.dir/build.make:758: recipe for target 'horovod/mxnet/CMakeFiles/mxnet.dir/mpi_ops.cc.o' failed
```
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[GitHub] [incubator-mxnet] bartekkuncer commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
bartekkuncer commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-753866603
> The files included in are
>
> ```
> mxnet/include/mkldnn
> mxnet/include/mkldnn/mkldnn_version.h
> mxnet/include/mkldnn/dnnl_debug.h
> mxnet/include/mkldnn/mkldnn_debug.h
> mxnet/include/mkldnn/dnnl_ocl.h
> mxnet/include/mkldnn/dnnl_sycl.h
> mxnet/include/mkldnn/dnnl_ocl.hpp
> mxnet/include/mkldnn/mkldnn_types.h
> mxnet/include/mkldnn/dnnl_version.h
> mxnet/include/mkldnn/oneapi
> mxnet/include/mkldnn/oneapi/dnnl
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_debug.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_ocl.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_ocl.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_types.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl_types.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool_iface.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_sycl.hpp
> mxnet/include/mkldnn/oneapi/dnnl/dnnl_threadpool.h
> mxnet/include/mkldnn/oneapi/dnnl/dnnl.h
> mxnet/include/mkldnn/mkldnn_config.h
> mxnet/include/mkldnn/dnnl_types.h
> mxnet/include/mkldnn/dnnl.hpp
> mxnet/include/mkldnn/dnnl_config.h
> mxnet/include/mkldnn/mkldnn.hpp
> mxnet/include/mkldnn/mkldnn_dnnl_mangling.h
> mxnet/include/mkldnn/dnnl_sycl_types.h
> mxnet/include/mkldnn/dnnl_threadpool_iface.hpp
> mxnet/include/mkldnn/dnnl_threadpool.hpp
> mxnet/include/mkldnn/dnnl_sycl.hpp
> mxnet/include/mkldnn/dnnl_threadpool.h
> mxnet/include/mkldnn/mkldnn.h
> mxnet/include/mkldnn/dnnl.h
> ```
>
> I think we may need to update
>
> https://github.com/apache/incubator-mxnet/blob/3c5beb3596b6bc01f77bc7ddd14ed90221c31950/cd/mxnet_lib/static/Jenkins_pipeline.groovy#L36
>
> to ensure that the config files are stashed correctly on the CD
Thanks @leezu . I fixed it in CI but must have overlooked it in CD.
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[GitHub] [incubator-mxnet] leezu closed issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu closed issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690
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[GitHub] [incubator-mxnet] leezu commented on issue #19690: oneDNN 2 missing headerfiles
Posted by GitBox <gi...@apache.org>.
leezu commented on issue #19690:
URL: https://github.com/apache/incubator-mxnet/issues/19690#issuecomment-749005881
Horovod now fails with
```
[0m[91m In file included from /tmp/pip-req-build-bhade3mm/horovod/mxnet/mpi_ops.h:24:0,
from /tmp/pip-req-build-bhade3mm/horovod/mxnet/mpi_ops.cc:21:
/usr/local/lib/python3.6/dist-packages/mxnet/include/mxnet/ndarray.h:41:10: fatal error: mkldnn.hpp: No such file or directory
[0m[91m #include <mkldnn.hpp>
[0m[91m ^~~~~~~~~~~~
[0m[91m compilation terminated.
[0m[91m horovod/mxnet/CMakeFiles/mxnet.dir/build.make:758: recipe for target 'horovod/mxnet/CMakeFiles/mxnet.dir/mpi_ops.cc.o' failed
```
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