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Posted to user@uima.apache.org by Radwen ANIBA <ar...@gmail.com> on 2009/06/22 13:37:28 UTC
ECLIPSE RCP and UIMA
Hello everyone,
I would like to create an RCP application using eclipse and my application
core that was made using UIMA.
I know that is feasable but I would like to know how, i searched the web but
in vain.
Did somebody tried to do sich thing ?
Regards
Radwen
Re: ECLIPSE RCP and UIMA
Posted by Jörn Kottmann <ko...@gmail.com>.
Kai Schlamp wrote:
> Thanks for the suggestion, Jörn. I will take a look.
> By the way ... the link to the source of the CAS Editor is broken (see
> http://incubator.apache.org/uima/sandbox.html#CAS%20Editor).
>
Thanks for reporting this, the Cas Editor is now part of the UIMA
framework distribution.
Here is a link to the source code:
http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uimaj-ep-cas-editor/
Jörn
Re: ECLIPSE RCP and UIMA
Posted by Kai Schlamp <sc...@gmx.de>.
Thanks for the suggestion, Jörn. I will take a look.
By the way ... the link to the source of the CAS Editor is broken (see
http://incubator.apache.org/uima/sandbox.html#CAS%20Editor).
Regards,
Kai
Jörn Kottmann wrote:
> Kai Schlamp wrote:
>> May I ask you guys what you are working on?
>>
>> I am working on a biomedical language platform based on Eclipse RCP
>> and UIMA.
>> A beta version (incl source code) will be released in the next few
>> weeks on https://sourceforge.net/projects/pubcurator/ (not much there
>> yet).
>
> If you want to display text with annotations it could be interesting for
> you to base your RCP application
> on the Cas Editor Eclipse Plugin
>
> Jörn
>
RE: ECLIPSE RCP and UIMA
Posted by "Chavan, Girish" <ch...@upmc.edu>.
Cool. I'll definitely give it a try.
~g
-----Original Message-----
From: Jörn Kottmann [mailto:kottmann@gmail.com]
Sent: Wednesday, June 24, 2009 4:49 AM
To: uima-user@incubator.apache.org
Subject: Re: ECLIPSE RCP and UIMA
Chavan, Girish wrote:
> That's a great idea. I already have developed something similar but a generic CAS viewer sounds more attractive.
>
I had a short look at your code, I think it should be possible to
replace your document viewer
with the editor from the Cas Editor. The editor is exposing the CAS
object to all your
views, so you will have to change them a little to call the new methods.
The editor
also keeps track of changes which are made to the CAS by the views to
keep everything
in sync.
Jörn
Re: ECLIPSE RCP and UIMA
Posted by Jörn Kottmann <ko...@gmail.com>.
Chavan, Girish wrote:
> That's a great idea. I already have developed something similar but a generic CAS viewer sounds more attractive.
>
I had a short look at your code, I think it should be possible to
replace your document viewer
with the editor from the Cas Editor. The editor is exposing the CAS
object to all your
views, so you will have to change them a little to call the new methods.
The editor
also keeps track of changes which are made to the CAS by the views to
keep everything
in sync.
Jörn
RE: ECLIPSE RCP and UIMA
Posted by "Chavan, Girish" <ch...@upmc.edu>.
That's a great idea. I already have developed something similar but a generic CAS viewer sounds more attractive.
Thanks,
Girish
-----Original Message-----
From: Jörn Kottmann [mailto:kottmann@gmail.com]
Sent: Tuesday, June 23, 2009 11:30 AM
To: uima-user@incubator.apache.org
Subject: Re: ECLIPSE RCP and UIMA
Kai Schlamp wrote:
> May I ask you guys what you are working on?
>
> I am working on a biomedical language platform based on Eclipse RCP
> and UIMA.
> A beta version (incl source code) will be released in the next few
> weeks on https://sourceforge.net/projects/pubcurator/ (not much there
> yet).
If you want to display text with annotations it could be interesting for
you to base your RCP application
on the Cas Editor Eclipse Plugin
Jörn
Re: ECLIPSE RCP and UIMA
Posted by Kai Schlamp <sc...@gmx.de>.
Hy Radwen.
No, we are not related to NCBI or Pubmed. We just use Pubmed (with the help of Eutils) among other
things to fetch documents for analysis.
If you have further questions or just interested in an exchange of ideas, write me a mail.
Regards,
Kai
Radwen ANIBA wrote:
> Hi Kai,
>
> I'm developping a bioinformatics application (so opensource), and i'm
> interested to know if pubcurator is relative to pubmed ? if so i'm
> interested to share some knowledge, it could be useful for us.
>
> Rad
>
> 2009/6/23 Jörn Kottmann <ko...@gmail.com>
>
>> Kai Schlamp wrote:
>>
>>> May I ask you guys what you are working on?
>>>
>>> I am working on a biomedical language platform based on Eclipse RCP and
>>> UIMA.
>>> A beta version (incl source code) will be released in the next few weeks
>>> on https://sourceforge.net/projects/pubcurator/ (not much there yet).
>>>
>> If you want to display text with annotations it could be interesting for
>> you to base your RCP application
>> on the Cas Editor Eclipse Plugin
>>
>> Jörn
>>
>
Re: ECLIPSE RCP and UIMA
Posted by Radwen ANIBA <ar...@gmail.com>.
Hi Kai,
I'm developping a bioinformatics application (so opensource), and i'm
interested to know if pubcurator is relative to pubmed ? if so i'm
interested to share some knowledge, it could be useful for us.
Rad
2009/6/23 Jörn Kottmann <ko...@gmail.com>
> Kai Schlamp wrote:
>
>> May I ask you guys what you are working on?
>>
>> I am working on a biomedical language platform based on Eclipse RCP and
>> UIMA.
>> A beta version (incl source code) will be released in the next few weeks
>> on https://sourceforge.net/projects/pubcurator/ (not much there yet).
>>
>
> If you want to display text with annotations it could be interesting for
> you to base your RCP application
> on the Cas Editor Eclipse Plugin
>
> Jörn
>
Re: ECLIPSE RCP and UIMA
Posted by Jörn Kottmann <ko...@gmail.com>.
Kai Schlamp wrote:
> May I ask you guys what you are working on?
>
> I am working on a biomedical language platform based on Eclipse RCP
> and UIMA.
> A beta version (incl source code) will be released in the next few
> weeks on https://sourceforge.net/projects/pubcurator/ (not much there
> yet).
If you want to display text with annotations it could be interesting for
you to base your RCP application
on the Cas Editor Eclipse Plugin
Jörn
RE: Re: ECLIPSE RCP and UIMA
Posted by "Chavan, Girish" <ch...@upmc.edu>.
Thanks. I used JFreechart and some custom modifications to their
EnhancedChartComposite class for the mouse-drag selection feature.
~g
-----Original Message-----
From: news [mailto:news@ger.gmane.org] On Behalf Of Kai Schlamp
Sent: Tuesday, June 23, 2009 8:40 PM
To: uima-user@incubator.apache.org
Subject: Re: ECLIPSE RCP and UIMA
Chavan, Girish wrote:
> We are developing a tool for ontology enrichment. More details here:
> http://bioontology.org/tools/ODIE.html
>
> It is an open source project. We use Eclipse RCP as the frontend
> workbench where
> users will be able to run UIMA pipelines.
Hello Girish,
a really cool application. Thanks for letting me know.
How is the histogram drawed? Directly by using Draw2D?
Regards,
Kai
Re: ECLIPSE RCP and UIMA
Posted by Kai Schlamp <sc...@gmx.de>.
Chavan, Girish wrote:
> We are developing a tool for ontology enrichment. More details here:
> http://bioontology.org/tools/ODIE.html
>
> It is an open source project. We use Eclipse RCP as the frontend
> workbench where
> users will be able to run UIMA pipelines.
Hello Girish,
a really cool application. Thanks for letting me know.
How is the histogram drawed? Directly by using Draw2D?
Regards,
Kai
RE: Re: ECLIPSE RCP and UIMA
Posted by "Chavan, Girish" <ch...@upmc.edu>.
We are developing a tool for ontology enrichment. More details here:
http://bioontology.org/tools/ODIE.html
It is an open source project. We use Eclipse RCP as the frontend
workbench where
users will be able to run UIMA pipelines.
cheers,
Girish
-----Original Message-----
From: news [mailto:news@ger.gmane.org] On Behalf Of Kai Schlamp
Sent: Tuesday, June 23, 2009 11:15 AM
To: uima-user@incubator.apache.org
Subject: Re: ECLIPSE RCP and UIMA
May I ask you guys what you are working on?
I am working on a biomedical language platform based on Eclipse RCP and
UIMA.
A beta version (incl source code) will be released in the next few weeks
on
https://sourceforge.net/projects/pubcurator/ (not much there yet).
What do you use Eclipse RCP + UIMA for? Commercially or Open Source?
Best regards,
Kai
Re: ECLIPSE RCP and UIMA
Posted by Kai Schlamp <sc...@gmx.de>.
May I ask you guys what you are working on?
I am working on a biomedical language platform based on Eclipse RCP and UIMA.
A beta version (incl source code) will be released in the next few weeks on
https://sourceforge.net/projects/pubcurator/ (not much there yet).
What do you use Eclipse RCP + UIMA for? Commercially or Open Source?
Best regards,
Kai
Re: ECLIPSE RCP and UIMA
Posted by Radwen ANIBA <ar...@gmail.com>.
Thanks a lot
Radwen
2009/6/22 Chavan, Girish <ch...@upmc.edu>
> Here is a tutorial that might be helpful:
> http://www.girishchavan.net/articles/eclipseuimatutorial.html
>
> -Girish
>
> -----Original Message-----
> From: Radwen ANIBA [mailto:aradwen@gmail.com]
> Sent: Monday, June 22, 2009 9:49 AM
> To: uima-user@incubator.apache.org
> Subject: Re: ECLIPSE RCP and UIMA
>
> Thanx for replying Chavan,
>
> Do you have any Support or starting point from which I can start ? This
> would be very helpful for me.
>
> Regards
>
> Radwen
>
> 2009/6/22 Chavan, Girish <ch...@upmc.edu>
>
> > I am doing such a project right now. It is definitely feasible. The
> most
> > common issues I faced are classNotFound exceptions which can be taken
> > care of using buddy policy between plugins.
> >
> >
> > Girish
> >
> >
> > -----Original Message-----
> > From: Radwen ANIBA [mailto:aradwen@gmail.com]
> > Sent: Monday, June 22, 2009 7:37 AM
> > To: uima-user
> > Subject: ECLIPSE RCP and UIMA
> >
> > Hello everyone,
> >
> > I would like to create an RCP application using eclipse and my
> > application
> > core that was made using UIMA.
> > I know that is feasable but I would like to know how, i searched the
> web
> > but
> > in vain.
> >
> > Did somebody tried to do sich thing ?
> >
> > Regards
> >
> > Radwen
> >
>
RE: ECLIPSE RCP and UIMA
Posted by "Chavan, Girish" <ch...@upmc.edu>.
Here is a tutorial that might be helpful:
http://www.girishchavan.net/articles/eclipseuimatutorial.html
-Girish
-----Original Message-----
From: Radwen ANIBA [mailto:aradwen@gmail.com]
Sent: Monday, June 22, 2009 9:49 AM
To: uima-user@incubator.apache.org
Subject: Re: ECLIPSE RCP and UIMA
Thanx for replying Chavan,
Do you have any Support or starting point from which I can start ? This
would be very helpful for me.
Regards
Radwen
2009/6/22 Chavan, Girish <ch...@upmc.edu>
> I am doing such a project right now. It is definitely feasible. The
most
> common issues I faced are classNotFound exceptions which can be taken
> care of using buddy policy between plugins.
>
>
> Girish
>
>
> -----Original Message-----
> From: Radwen ANIBA [mailto:aradwen@gmail.com]
> Sent: Monday, June 22, 2009 7:37 AM
> To: uima-user
> Subject: ECLIPSE RCP and UIMA
>
> Hello everyone,
>
> I would like to create an RCP application using eclipse and my
> application
> core that was made using UIMA.
> I know that is feasable but I would like to know how, i searched the
web
> but
> in vain.
>
> Did somebody tried to do sich thing ?
>
> Regards
>
> Radwen
>
Re: ECLIPSE RCP and UIMA
Posted by Radwen ANIBA <ar...@gmail.com>.
Thanx for replying Chavan,
Do you have any Support or starting point from which I can start ? This
would be very helpful for me.
Regards
Radwen
2009/6/22 Chavan, Girish <ch...@upmc.edu>
> I am doing such a project right now. It is definitely feasible. The most
> common issues I faced are classNotFound exceptions which can be taken
> care of using buddy policy between plugins.
>
>
> Girish
>
>
> -----Original Message-----
> From: Radwen ANIBA [mailto:aradwen@gmail.com]
> Sent: Monday, June 22, 2009 7:37 AM
> To: uima-user
> Subject: ECLIPSE RCP and UIMA
>
> Hello everyone,
>
> I would like to create an RCP application using eclipse and my
> application
> core that was made using UIMA.
> I know that is feasable but I would like to know how, i searched the web
> but
> in vain.
>
> Did somebody tried to do sich thing ?
>
> Regards
>
> Radwen
>
RE: ECLIPSE RCP and UIMA
Posted by "Chavan, Girish" <ch...@upmc.edu>.
I am doing such a project right now. It is definitely feasible. The most
common issues I faced are classNotFound exceptions which can be taken
care of using buddy policy between plugins.
Girish
-----Original Message-----
From: Radwen ANIBA [mailto:aradwen@gmail.com]
Sent: Monday, June 22, 2009 7:37 AM
To: uima-user
Subject: ECLIPSE RCP and UIMA
Hello everyone,
I would like to create an RCP application using eclipse and my
application
core that was made using UIMA.
I know that is feasable but I would like to know how, i searched the web
but
in vain.
Did somebody tried to do sich thing ?
Regards
Radwen