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Posted to issues@bigtop.apache.org by "Kengo Seki (Jira)" <ji...@apache.org> on 2020/07/23 23:14:00 UTC

[jira] [Created] (BIGTOP-3379) Fix Spark build failure on CentOS 8

Kengo Seki created BIGTOP-3379:
----------------------------------

             Summary: Fix Spark build failure on CentOS 8
                 Key: BIGTOP-3379
                 URL: https://issues.apache.org/jira/browse/BIGTOP-3379
             Project: Bigtop
          Issue Type: Bug
          Components: spark
            Reporter: Kengo Seki
            Assignee: Kengo Seki


Building Spark fails with the following error on CentOS 8, which provides R 4.0.2 as of now. Looks like the same issue as SPARK-31918.

{code}
--- re-building 'sparkr-vignettes.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.

Attaching package: 'SparkR'

The following objects are masked from 'package:stats':

    cov, filter, lag, na.omit, predict, sd, var, window

The following objects are masked from 'package:base':

    as.data.frame, colnames, colnames<-, drop, endsWith, intersect,
    rank, rbind, sample, startsWith, subset, summary, transform, union

(snip)

20/07/20 00:47:34 ERROR Executor: Exception in task 0.0 in stage 1.0 (TID 1)
org.apache.spark.SparkException: R computation failed with
 Error in lapply(part, FUN) : attempt to bind a variable to R_UnboundValue

(snip)

--- failed re-building 'sparkr-vignettes.Rmd'

SUMMARY: processing the following file failed:
  'sparkr-vignettes.Rmd'

Error: Vignette re-building failed.
Execution halted
error: Bad exit status from /var/tmp/rpm-tmp.fCRFJe (%build)
    Bad exit status from /var/tmp/rpm-tmp.fCRFJe (%build)


RPM build errors:

> Task :spark-rpm FAILED
{code}



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