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Posted to dev@rya.apache.org by "Aaron D. Mihalik" <aa...@gmail.com> on 2019/07/16 14:55:07 UTC
[VOTE] Release Rya (Incubating) version 4.0.0 RC1
I am pleased to be calling this vote for the source release of Apache Rya
(Incubating), version 4.0.0.
The source zip, including signatures, digests, etc. can be found at:
https://dist.apache.org/repos/dist/dev/incubator/rya/rya-incubating-4.0.0-rc1/
Ancillary artifacts such as poms, jars, wars, ect. can be found here:
https://repository.apache.org/content/repositories/orgapacherya-1011/org/apache/rya/
The Git tag is rya-incubating-4.0.0-rc1
The Git commit ID is 824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
https://gitbox.apache.org/repos/asf?p=incubator-rya.git;a=commit;h=824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
Checksums of rya-project-4.0.0-source-release.zip:
SHA1: e5e91b19abddbdf3c9f0e18469433e730bef7957
MD5: 1d46620a37df803c3ba0b1b383c1da10
Release artifacts are signed with the following key:
https://people.apache.org/keys/committer/mihalik.asc
KEYS file available here:
https://dist.apache.org/repos/dist/release/incubator/rya/KEYS
Issues that were closed/resolved for this release are here:
https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12319020&version=12341289
The vote will be open for 72 hours and close at 11:00 AM Friday, July 19,
2019 (EDT).
Please download the release candidate and evaluate the necessary items
including checking hashes, signatures, build from source, and test. Then
please vote:
[ ] +1 Release this package as rya-project-4.0.0
[ ] +0 no opinion
[ ] -1 Do not release this package because because...
[RESULT] [VOTE] Release Apache Rya (Incubating) version 4.0.0 RC1
Posted by "Aaron D. Mihalik" <mi...@alum.mit.edu>.
This vote passes with +3 Binding and +1 Non-binding votes.
+3 (binding):
Aaron Mihalik
Puja Valiyil
David Lotts
+1 (non binding):
Jeff Dasch
I'll be sending a vote email to the IPMC soon
--Aaron
On Mon, Jul 22, 2019 at 5:33 PM David Lotts <dl...@gmail.com> wrote:
>
> +1 Release this package as rya-project-4.0.0
>
> I tested all the check-sums and signature.
> I built and ran ALL the declared tests.
> david.
>
> On Tue, Jul 16, 2019 at 10:55 AM Aaron D. Mihalik <aa...@gmail.com>
> wrote:
>
>> I am pleased to be calling this vote for the source release of Apache Rya
>> (Incubating), version 4.0.0.
>>
>> The source zip, including signatures, digests, etc. can be found at:
>>
>> https://dist.apache.org/repos/dist/dev/incubator/rya/rya-incubating-4.0.0-rc1/
>>
>> Ancillary artifacts such as poms, jars, wars, ect. can be found here:
>>
>> https://repository.apache.org/content/repositories/orgapacherya-1011/org/apache/rya/
>>
>> The Git tag is rya-incubating-4.0.0-rc1
>> The Git commit ID is 824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>>
>> https://gitbox.apache.org/repos/asf?p=incubator-rya.git;a=commit;h=824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>>
>> Checksums of rya-project-4.0.0-source-release.zip:
>> SHA1: e5e91b19abddbdf3c9f0e18469433e730bef7957
>> MD5: 1d46620a37df803c3ba0b1b383c1da10
>>
>> Release artifacts are signed with the following key:
>> https://people.apache.org/keys/committer/mihalik.asc
>>
>> KEYS file available here:
>> https://dist.apache.org/repos/dist/release/incubator/rya/KEYS
>>
>> Issues that were closed/resolved for this release are here:
>>
>> https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12319020&version=12341289
>>
>>
>> The vote will be open for 72 hours and close at 11:00 AM Friday, July 19,
>> 2019 (EDT).
>> Please download the release candidate and evaluate the necessary items
>> including checking hashes, signatures, build from source, and test. Then
>> please vote:
>>
>> [ ] +1 Release this package as rya-project-4.0.0
>> [ ] +0 no opinion
>> [ ] -1 Do not release this package because because...
>>
>
Re: [VOTE] Release Rya (Incubating) version 4.0.0 RC1
Posted by David Lotts <dl...@gmail.com>.
+1 Release this package as rya-project-4.0.0
I tested all the check-sums and signature.
I built and ran ALL the declared tests.
david.
On Tue, Jul 16, 2019 at 10:55 AM Aaron D. Mihalik <aa...@gmail.com>
wrote:
> I am pleased to be calling this vote for the source release of Apache Rya
> (Incubating), version 4.0.0.
>
> The source zip, including signatures, digests, etc. can be found at:
>
> https://dist.apache.org/repos/dist/dev/incubator/rya/rya-incubating-4.0.0-rc1/
>
> Ancillary artifacts such as poms, jars, wars, ect. can be found here:
>
> https://repository.apache.org/content/repositories/orgapacherya-1011/org/apache/rya/
>
> The Git tag is rya-incubating-4.0.0-rc1
> The Git commit ID is 824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>
> https://gitbox.apache.org/repos/asf?p=incubator-rya.git;a=commit;h=824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>
> Checksums of rya-project-4.0.0-source-release.zip:
> SHA1: e5e91b19abddbdf3c9f0e18469433e730bef7957
> MD5: 1d46620a37df803c3ba0b1b383c1da10
>
> Release artifacts are signed with the following key:
> https://people.apache.org/keys/committer/mihalik.asc
>
> KEYS file available here:
> https://dist.apache.org/repos/dist/release/incubator/rya/KEYS
>
> Issues that were closed/resolved for this release are here:
>
> https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12319020&version=12341289
>
>
> The vote will be open for 72 hours and close at 11:00 AM Friday, July 19,
> 2019 (EDT).
> Please download the release candidate and evaluate the necessary items
> including checking hashes, signatures, build from source, and test. Then
> please vote:
>
> [ ] +1 Release this package as rya-project-4.0.0
> [ ] +0 no opinion
> [ ] -1 Do not release this package because because...
>
Re: [VOTE] Release Rya (Incubating) version 4.0.0 RC1
Posted by Puja Valiyil <pu...@gmail.com>.
+1 (binding)
Sent from my iPhone
> On Jul 18, 2019, at 5:06 PM, Jeff Dasch <hc...@gmail.com> wrote:
>
> +1 (non-binding)
> Verified checksums match for source release. I found a couple issues with
> flaky integration tests, but they can probably just be logged in JIRA.
>
> I had no issues when I used docker to verify the build with this command:
> docker run -it --rm
> -v /path/to/blank-m2-cache:/root/.m2 \
> -v "$(pwd)":/usr/src/rya \
> -w /usr/src/rya \
> maven:3.6.1-jdk-8 \
> mvn clean install -P geoindexing,benchmark,giraph
>
> I did run into some issues when I tried running a complete build with all
> profiles enabled:
> mvn clean install -P geoindexing,benchmark,giraph,enable-it
>
> I had to -rf from rya.pcj.fluo.integration, rya.streams.client, and
> rya.streams.integration as there were some timeout issues that caused the
> builds to fail. I suppose it could be docker related, or some IT
> dependencies aren't getting cleaned up properly during teardown.
> Ultimately, I was not able to get rya.streams.client to build with all of
> those profiles in docker.
>
> I also ran it against an internal build server and it logged 3 IT failures:
> org.apache.rya.streams.client.command.AddQueryCommandIT.longParams
> org.apache.rya.streams.client.command.RunQueryCommandIT.runQueryFromFile
> org.apache.rya.streams.client.command.RunQueryCommandIT.runQuery
>
> I exercised those IT's individually and found that RunQueryCommandIT seemed
> to hang forever, but AddQueryComandIT passed. RunQueryCommandIT has some
> threading and joins, so we might want to put an additional timeout in so it
> fails faster instead of failing with the maven-failsafe-plugin's timeout.
>
> Finally, the kafka and zookeeper loggers are configured to log at the debug
> level during the build which dumps out a lot of unnecessary logging
> statements. We might want to turn that off or down as it will help
> speed-up builds.
>
>
>
> On Thu, Jul 18, 2019 at 11:04 AM Aaron D. Mihalik <mi...@alum.mit.edu>
> wrote:
>
>> All,
>>
>> The vote will close in less than 24 hours at 11:00 AM Friday, July 19, 2019
>> (EDT).
>>
>> Please download the release candidate and evaluate the necessary items
>> including checking hashes, signatures, build from source, and test. Then
>> please vote:
>>
>> [ ] +1 Release this package as rya-project-4.0.0
>> [ ] +0 no opinion
>> [ ] -1 Do not release this package because because...
>>
>> On Wed, Jul 17, 2019 at 3:05 PM Aaron D. Mihalik <mi...@alum.mit.edu>
>> wrote:
>>
>>> Adina,
>>>
>>> Thanks for taking the time to build and verify the release.
>>>
>>> - Notice Issue:
>>>
>>> I'll commit a change to master, but I don't think this should hold up the
>>> release. If you (or others) think it's an issue, toss a '-1' vote on
>> this
>>> thread and that'll force em to fix it in the release :)
>>>
>>> - Release Notes:
>>>
>>> I'll double check all of the release notes and fix them. I don't think
>>> this an issue to hold up the release (the notes aren't actually part of
>> the
>>> release, and 'll probably have them fixed before the end of the vote).
>>>
>>> - Build issues:
>>>
>>> Try using the flag -DskipTests (I don't think -Dskip-tests is valid).
>>>
>>> The build issue is related to a test and it appears that the mongo client
>>> (Rya) cannot connect to the temporary mongo server that the plug-in sets
>>> up. The server seems to start up and binds to localhost. This could be
>> a
>>> firewall issue or an ip address issue (127.0.1.1 seems like a strange ip
>> in
>>> the connection string: WRK1065646GOVTu/127.0.1.1:27017).
>>>
>>> I built Rya and ran all of the tests on both my personal macOS machine
>> (in
>>> order to sign the code and artifacts) and on AWS Linux on EC2 (for
>>> validation). I've included my build notes below.
>>>
>>> --Aaron
>>>
>>> AMI: Amazon Linux AMI 2018.03.0 (HVM), SSD Volume Type
>>> Instance Type: t3a.xlarge
>>>
>>> # configure repo to get maven
>>> sudo wget
>>>
>> http://repos.fedorapeople.org/repos/dchen/apache-maven/epel-apache-maven.repo
>>> -O /etc/yum.repos.d/epel-apache-maven.repo
>>> sudo sed -i s/\$releasever/6/g /etc/yum.repos.d/epel-apache-maven.repo
>>>
>>> # install maven, java 8 and git
>>> sudo yum install -y java-1.8.0-openjdk-devel git apache-maven
>>>
>>> # change to java 8
>>> sudo update-alternatives --set java
>>> /usr/lib/jvm/jre-1.8.0-openjdk.x86_64/bin/java
>>> sudo update-alternatives --set javac
>>> /usr/lib/jvm/java-1.8.0-openjdk.x86_64/bin/javac
>>>
>>> # This should fail
>>> ping $(hostname)
>>>
>>> # add hostname in /etc/hosts
>>> hostname
>>> sudo vi /etc/hosts
>>>
>>> # now this should work
>>> ping $(hostname)
>>>
>>> git clone https://github.com/apache/incubator-rya.git
>>> cd incubator-rya
>>> mvn clean install
>>>
>>>
>>> On Wed, Jul 17, 2019 at 7:16 AM Adina Crainiceanu <ad...@usna.edu>
>> wrote:
>>>
>>>> Hi,
>>>>
>>>> I'm leaving on vacation today with no computer access, so I will not be
>>>> able to finish testing the release before Monday. This is what I have so
>>>> far:
>>>>
>>>> -name includes incubating
>>>> -checksums correct (md5,sha1, sha512) (I did sha1sum filename and md5sum
>>>> filename)
>>>> -DISCLAIMER exists and has the correct content
>>>> -LICENSE exist and has the correct content (if we don't bundle any
>>>> dependencies)
>>>> -artifacts placed where expected in
>>>> https://dist.apache.org/repos/dist/dev/incubator/rya/
>>>> -no unexpected binaries in the .zip file
>>>>
>>>> *-NOTICE needs to change year from 2018 to 2019!!!!*
>>>> - *ERROR: cannot build from source, with included tests (I did mvm clean
>>>> install and got errors)*
>>>>
>>>> Additional question: I saw in the notes that Accumulo was upgraded to
>>>> 1.9.1, but in the pom the Accumulo version mentioned is 1.6.4. What is
>> the
>>>> Accumulo version for this release?
>>>>
>>>> When trying, mvm clean install, I got a build error on rya.indexing.pcj.
>>>> How should I build Rya?
>>>>
>>>> Here is part of the output from mvn clean install -Dskip-tests:
>>>> [INFO]
>>>> [INFO] --- animal-sniffer-maven-plugin:1.15:check (default) @ rya.sail
>> ---
>>>> [INFO] Checking unresolved references to
>>>> org.codehaus.mojo.signature:java18:1.0
>>>> [INFO]
>>>> [INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ rya.sail ---
>>>> [INFO] Building jar:
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
>>>> [INFO]
>>>> [INFO] --- maven-site-plugin:3.4:attach-descriptor (attach-descriptor) @
>>>> rya.sail ---
>>>> [INFO]
>>>> [INFO] --- maven-source-plugin:2.4:jar-no-fork (attach-sources) @
>>>> rya.sail ---
>>>> [INFO] Building jar:
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
>>>> [INFO]
>>>> [INFO] --- maven-failsafe-plugin:2.18.1:integration-test (default) @
>>>> rya.sail ---
>>>> [INFO] Tests are skipped.
>>>> [INFO]
>>>> [INFO] --- maven-failsafe-plugin:2.18.1:verify (default) @ rya.sail ---
>>>> [INFO] Tests are skipped.
>>>> [INFO]
>>>> [INFO] --- maven-checkstyle-plugin:2.17:check (check-style) @ rya.sail
>> ---
>>>> [INFO]
>>>> [INFO] --- maven-install-plugin:2.5.2:install (default-install) @
>>>> rya.sail ---
>>>> [INFO] Installing
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
>>>> to
>>>>
>> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.jar
>>>> [INFO] Installing
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/pom.xml
>>>> to
>>>>
>> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.pom
>>>> [INFO] Installing
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
>>>> to
>>>>
>> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating-sources.jar
>>>> [INFO]
>>>> [INFO] ------------------< org.apache.rya:rya.indexing.pcj
>>>>> -------------------
>>>> [INFO] Building Apache Rya PCJ Core 4.0.0-incubating
>>>> [17/69]
>>>> [INFO] --------------------------------[ jar
>>>> ]---------------------------------
>>>> [INFO]
>>>> [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @
>>>> rya.indexing.pcj ---
>>>> [INFO] Deleting
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target
>>>> [INFO]
>>>> [INFO] --- apache-rat-plugin:0.11:check (check-licenses) @
>>>> rya.indexing.pcj ---
>>>> [INFO] 51 implicit excludes (use -debug for more details).
>>>> [INFO] Exclude: DEPENDENCIES
>>>> [INFO] 42 resources included (use -debug for more details)
>>>> [INFO] Rat check: Summary of files. Unapproved: 0 unknown: 0 generated:
>> 0
>>>> approved: 42 licence.
>>>> [INFO]
>>>> [INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-mvn) @
>>>> rya.indexing.pcj ---
>>>> [INFO]
>>>> [INFO] --- maven-remote-resources-plugin:1.5:process (default) @
>>>> rya.indexing.pcj ---
>>>> [INFO]
>>>> [INFO] --- maven-resources-plugin:2.7:resources (default-resources) @
>>>> rya.indexing.pcj ---
>>>> [INFO] Using 'UTF-8' encoding to copy filtered resources.
>>>> [INFO] skip non existing resourceDirectory
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/main/resources
>>>> [INFO] Copying 3 resources
>>>> [INFO]
>>>> [INFO] --- maven-compiler-plugin:3.2:compile (default-compile) @
>>>> rya.indexing.pcj ---
>>>> [INFO] Changes detected - recompiling the module!
>>>> [INFO] Compiling 26 source files to
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/classes
>>>> [INFO]
>>>> [INFO] >>> findbugs-maven-plugin:3.0.5:check (analyze-compile) >
>>>> :findbugs @ rya.indexing.pcj >>>
>>>> [INFO]
>>>> [INFO] --- findbugs-maven-plugin:3.0.5:findbugs (findbugs) @
>>>> rya.indexing.pcj ---
>>>> [INFO] Fork Value is true
>>>> [INFO] Done FindBugs Analysis....
>>>> [INFO]
>>>> [INFO] <<< findbugs-maven-plugin:3.0.5:check (analyze-compile) <
>>>> :findbugs @ rya.indexing.pcj <<<
>>>> [INFO]
>>>> [INFO]
>>>> [INFO] --- findbugs-maven-plugin:3.0.5:check (analyze-compile) @
>>>> rya.indexing.pcj ---
>>>> [INFO] BugInstance size is 0
>>>> [INFO] Error size is 0
>>>> [INFO] No errors/warnings found
>>>> [INFO]
>>>> [INFO] --- maven-resources-plugin:2.7:testResources
>>>> (default-testResources) @ rya.indexing.pcj ---
>>>> [INFO] Using 'UTF-8' encoding to copy filtered resources.
>>>> [INFO] skip non existing resourceDirectory
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/resources
>>>> [INFO] Copying 3 resources
>>>> [INFO]
>>>> [INFO] --- maven-compiler-plugin:3.2:testCompile (default-testCompile) @
>>>> rya.indexing.pcj ---
>>>> [INFO] Changes detected - recompiling the module!
>>>> [INFO] Compiling 15 source files to
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/test-classes
>>>> [INFO]
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
>>>> Some input files use unchecked or unsafe operations.
>>>> [INFO]
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
>>>> Recompile with -Xlint:unchecked for details.
>>>> [INFO]
>>>> [INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @
>>>> rya.indexing.pcj ---
>>>> [INFO] Surefire report directory:
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
>>>>
>>>> -------------------------------------------------------
>>>> T E S T S
>>>> -------------------------------------------------------
>>>> Running org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
>>>> SLF4J: Class path contains multiple SLF4J bindings.
>>>> SLF4J: Found binding in
>>>>
>> [jar:file:/home/adina/.m2/repository/org/slf4j/slf4j-log4j12/1.7.25/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
>>>> SLF4J: Found binding in
>>>>
>> [jar:file:/home/adina/.m2/repository/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class]
>>>> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
>>>> explanation.
>>>> SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 - [mongod
>>>> output]2019-07-17T07:04:27.888-0400 I CONTROL [main] note: noprealloc
>> may
>>>> hurt performance in many applications[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] MongoDB
>> starting :
>>>> pid=4675 port=27017
>>>>
>> dbpath=/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203
>>>> 64-bit host=WRK1065646GOVTu[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] db version
>>>> v4.0.2[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] git version:
>>>> fc1573ba18aee42f97a3bb13b67af7d837826b47[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] allocator:
>>>> tcmalloc[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] modules:
>>>> none[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] build
>>>> environment:[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] distarch:
>>>> x86_64[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] target_arch:
>>>> x86_64[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] options: { net:
>> {
>>>> port: 27017 }, security: { authorization: "disabled" }, storage: {
>> dbPath:
>>>>
>> "/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing....",
>>>> journal: { enabled: false }, mmapv1: { preallocDataFiles: false,
>>>> smallFiles: true }, syncPeriodSecs: 0.0 } }[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] [mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** WARNING:
>> Using
>>>> the XFS filesystem is strongly recommended with the WiredTiger storage
>>>> engine[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** See
>>>> http://dochub.mongodb.org/core/prodnotes-filesystem[mongod output]
>>>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] wiredtiger_open
>>>> config:
>>>>
>> create,cache_size=3416M,session_max=20000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),statistics_log=(wait=0),verbose=(recovery_progress),,log=(enabled=false),[mongod
>>>> output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.494-0400 I STORAGE [initandlisten] WiredTiger
>> message
>>>> [1563361468:494258][4675:0x7fbf7c5499c0], txn-recover: Set global
>> recovery
>>>> timestamp: 0[mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.548-0400 I RECOVERY [initandlisten] WiredTiger
>>>> recoveryTimestamp. Ts: Timestamp(0, 0)[mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 W STORAGE [initandlisten] Detected
>>>> configuration for non-active storage engine mmapv1 when current storage
>>>> engine is wiredTiger[mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** WARNING: This
>>>> server is bound to localhost.[mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
>> Remote
>>>> systems will be unable to connect to this server. [mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
>> Start
>>>> the server with --bind_ip <address> to specify which IP [mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
>>>> addresses it should serve responses from, or with --bind_ip_all
>> to[mongod
>>>> output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
>> bind to
>>>> all interfaces. If this behavior is desired, start the[mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
>> server
>>>> with --bind_ip 127.0.0.1 to disable this warning.[mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.692-0400 I STORAGE [initandlisten]
>> createCollection:
>>>> admin.system.version with provided UUID:
>>>> 767d343a-c6cf-4bc8-88ce-ac6616883c91[mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.838-0400 I COMMAND [initandlisten] setting
>>>> featureCompatibilityVersion to 4.0[mongod output]
>>>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:28.850-0400 I STORAGE [initandlisten]
>> createCollection:
>>>> local.startup_log with generated UUID:
>>>> 0d2ebf8d-321e-4d9b-9858-a0ed2c288681[mongod output]
>>>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:29.041-0400 I FTDC [initandlisten] Initializing
>>>> full-time diagnostic data capture with directory
>>>>
>> '/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203/diagnostic.data'[mongod
>>>> output]
>>>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:29.043-0400 I NETWORK [initandlisten] waiting for
>>>> connections on port 27017[mongod output]
>>>> 2019-07-17 07:04:29 INFO MongodExecutable:109 - start
>>>>
>> de.flapdoodle.embed.mongo.config.MongodConfigBuilder$ImmutableMongodConfig@45f45fa1
>>>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:29.044-0400 I STORAGE [LogicalSessionCacheRefresh]
>>>> createCollection: config.system.sessions with generated UUID:
>>>> 64521141-97ff-41c1-8933-33a1e64a8f34[mongod output]
>>>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh]
>> build
>>>> index on: config.system.sessions properties: { v: 2, key: { lastUse: 1
>> },
>>>> name: "lsidTTLIndex", ns: "config.system.sessions", expireAfterSeconds:
>>>> 1800 }[mongod output]
>>>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh]
>>>> building index using bulk method; build may temporarily use up to 500
>>>> megabytes of RAM[mongod output]
>>>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:29.289-0400 I INDEX [LogicalSessionCacheRefresh]
>> build
>>>> index done. scanned 0 total records. 0 secs[mongod output]
>>>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:04:29.289-0400 I COMMAND [LogicalSessionCacheRefresh]
>>>> command config.$cmd command: createIndexes { createIndexes:
>>>> "system.sessions", indexes: [ { key: { lastUse: 1 }, name:
>> "lsidTTLIndex",
>>>> expireAfterSeconds: 1800 } ], $db: "config" } numYields:0 reslen:114
>>>> locks:{ Global: { acquireCount: { r: 1, w: 1 } }, Database: {
>> acquireCount:
>>>> { W: 1 } }, Collection: { acquireCount: { w: 1 } } } protocol:op_msg
>>>> 244ms[mongod output]
>>>> 2019-07-17 07:04:29 INFO cluster:71 - Cluster created with settings
>>>> {hosts=[wrk1065646govtu:27017], mode=SINGLE,
>> requiredClusterType=UNKNOWN,
>>>> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
>>>> 2019-07-17 07:04:29 INFO cluster:76 - Exception in monitor thread while
>>>> connecting to server wrk1065646govtu:27017
>>>> com.mongodb.MongoSocketOpenException: Exception opening socket
>>>> at
>> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
>>>> at
>>>>
>> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
>>>> at
>>>>
>> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
>>>> at java.lang.Thread.run(Thread.java:748)
>>>> Caused by: java.net.ConnectException: Connection refused (Connection
>>>> refused)
>>>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>>>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>>>> at java.net.Socket.connect(Socket.java:589)
>>>> at
>>>>
>> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
>>>> at
>>>>
>> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
>>>> at
>> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
>>>> ... 3 more
>>>> 2019-07-17 07:04:29 INFO cluster:71 - Cluster description not yet
>>>> available. Waiting for 30000 ms before timing out
>>>> 2019-07-17 07:04:59 INFO cluster:71 - Cluster created with settings
>>>> {hosts=[wrk1065646govtu:27017], mode=SINGLE,
>> requiredClusterType=UNKNOWN,
>>>> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
>>>> 2019-07-17 07:04:59 INFO cluster:71 - Cluster description not yet
>>>> available. Waiting for 30000 ms before timing out
>>>> 2019-07-17 07:04:59 INFO cluster:76 - Exception in monitor thread while
>>>> connecting to server wrk1065646govtu:27017
>>>> com.mongodb.MongoSocketOpenException: Exception opening socket
>>>> at
>> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
>>>> at
>>>>
>> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
>>>> at
>>>>
>> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
>>>> at java.lang.Thread.run(Thread.java:748)
>>>> Caused by: java.net.ConnectException: Connection refused (Connection
>>>> refused)
>>>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>>>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>>>> at java.net.Socket.connect(Socket.java:589)
>>>> at
>>>>
>> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
>>>> at
>>>>
>> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
>>>> at
>> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
>>>> ... 3 more
>>>> Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 61.988
>>>> sec <<< FAILURE! - in
>>>> org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
>>>>
>> pcjToMetadata(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
>>>> Time elapsed: 31.971 sec <<< ERROR!
>>>> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while
>> waiting
>>>> to connect. Client view of cluster state is {type=UNKNOWN,
>>>> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
>>>> exception={com.mongodb.MongoSocketOpenException: Exception opening
>> socket},
>>>> caused by {java.net.ConnectException: Connection refused (Connection
>>>> refused)}}]
>>>> at
>>>>
>> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
>>>> at
>>>>
>> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
>>>> at
>>>>
>> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
>>>> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>> at
>>>>
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>>>> at
>>>>
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>>>> at java.lang.reflect.Method.invoke(Method.java:498)
>>>> at
>>>>
>> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
>>>> at
>>>>
>> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
>>>> at
>>>>
>> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
>>>> at
>>>>
>> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
>>>> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
>>>> at
>>>>
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
>>>> at
>>>>
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
>>>> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
>>>> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
>>>> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
>>>> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
>>>> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
>>>> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>>>>
>>>>
>> metadataExists(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
>>>> Time elapsed: 30.003 sec <<< ERROR!
>>>> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while
>> waiting
>>>> to connect. Client view of cluster state is {type=UNKNOWN,
>>>> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
>>>> exception={com.mongodb.MongoSocketOpenException: Exception opening
>> socket},
>>>> caused by {java.net.ConnectException: Connection refused (Connection
>>>> refused)}}]
>>>> at
>>>>
>> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
>>>> at
>>>>
>> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
>>>> at
>>>>
>> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
>>>> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>> at
>>>>
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>>>> at
>>>>
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>>>> at java.lang.reflect.Method.invoke(Method.java:498)
>>>> at
>>>>
>> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
>>>> at
>>>>
>> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
>>>> at
>>>>
>> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
>>>> at
>>>>
>> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
>>>> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
>>>> at
>>>>
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
>>>> at
>>>>
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
>>>> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
>>>> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
>>>> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
>>>> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
>>>> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
>>>> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>>>>
>>>> Running
>> org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
>>>> 2019-07-17 07:05:29 INFO cluster:71 - Cluster created with settings
>>>> {hosts=[wrk1065646govtu:27017], mode=SINGLE,
>> requiredClusterType=UNKNOWN,
>>>> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
>>>> 2019-07-17 07:05:29 INFO cluster:76 - Exception in monitor thread while
>>>> connecting to server wrk1065646govtu:27017
>>>> com.mongodb.MongoSocketOpenException: Exception opening socket
>>>> at
>> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
>>>> at
>>>>
>> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
>>>> at
>>>>
>> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
>>>> at java.lang.Thread.run(Thread.java:748)
>>>> Caused by: java.net.ConnectException: Connection refused (Connection
>>>> refused)
>>>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>>>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>>>> at java.net.Socket.connect(Socket.java:589)
>>>> at
>>>>
>> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
>>>> at
>>>>
>> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
>>>> at
>> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
>>>> ... 3 more
>>>> 2019-07-17 07:05:29 INFO cluster:71 - Cluster description not yet
>>>> available. Waiting for 30000 ms before timing out
>>>> Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 29.977
>>>> sec <<< FAILURE! - in
>>>> org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
>>>>
>> populatePcj(org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest)
>>>> Time elapsed: 29.977 sec <<< ERROR!
>>>> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while
>> waiting
>>>> to connect. Client view of cluster state is {type=UNKNOWN,
>>>> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
>>>> exception={com.mongodb.MongoSocketOpenException: Exception opening
>> socket},
>>>> caused by {java.net.ConnectException: Connection refused (Connection
>>>> refused)}}]
>>>> at
>>>>
>> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
>>>> at
>>>>
>> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
>>>> at
>>>>
>> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
>>>> at
>>>>
>> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
>>>> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
>>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>> at
>>>>
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>>>> at
>>>>
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>>>> at java.lang.reflect.Method.invoke(Method.java:498)
>>>> at
>>>>
>> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
>>>> at
>>>>
>> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
>>>> at
>>>>
>> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
>>>> at
>>>>
>> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
>>>> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
>>>> at
>>>>
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
>>>> at
>>>>
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
>>>> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
>>>> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
>>>> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
>>>> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
>>>> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
>>>> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
>>>> at
>>>>
>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
>>>> at
>>>>
>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>>>>
>>>> Running
>> org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
>>>> 2019-07-17 07:05:59 INFO deprecation:1019 - fs.default.name is
>>>> deprecated. Instead, use fs.defaultFS
>>>> 2019-07-17 07:05:59 WARN NativeCodeLoader:62 - Unable to load
>>>> native-hadoop library for your platform... using builtin-java classes
>> where
>>>> applicable
>>>> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:117 - Shutting down Rya
>>>> Connection.
>>>> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:119 - Rya Connection
>> shut
>>>> down.
>>>> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:127 - Shutting down Rya
>>>> Repo.
>>>> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:129 - Rya Repo shut
>> down.
>>>> Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.089
>> sec
>>>> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
>>>> Running
>>>> org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
>>>> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001
>> sec
>>>> - in
>> org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
>>>> Running
>>>>
>> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
>>>> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021
>> sec
>>>> - in
>>>>
>> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
>>>> Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
>>>> Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005
>> sec
>>>> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
>>>> Running
>>>>
>> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
>>>> Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
>>>> in
>>>>
>> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
>>>> Running
>>>> org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
>>>> Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
>>>> in
>> org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
>>>> Running
>>>> org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
>>>> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
>>>> in org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
>>>> Running
>>>>
>> org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
>>>> Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
>>>> in
>>>>
>> org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
>>>> 2019-07-17 07:06:00 WARN Mongod:104 - sendShutdown WRK1065646GOVTu/
>>>> 127.0.1.1:27017
>>>> java.net.ConnectException: Connection refused (Connection refused)
>>>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>>>> at
>>>> java.net
>> .AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>>>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>>>> at java.net.Socket.connect(Socket.java:589)
>>>> at de.flapdoodle.embed.mongo.runtime.Mongod.sendShutdown(Mongod.java:88)
>>>> at
>>>>
>> de.flapdoodle.embed.mongo.AbstractMongoProcess.sendStopToMongoInstance(AbstractMongoProcess.java:133)
>>>> at
>>>>
>> de.flapdoodle.embed.mongo.AbstractMongoProcess.stopInternal(AbstractMongoProcess.java:107)
>>>> at
>>>>
>> de.flapdoodle.embed.process.runtime.AbstractProcess.stop(AbstractProcess.java:177)
>>>> at
>> de.flapdoodle.embed.process.runtime.Executable.stop(Executable.java:80)
>>>> at
>>>>
>> de.flapdoodle.embed.process.runtime.Executable$JobKiller.run(Executable.java:97)
>>>> at java.lang.Thread.run(Thread.java:748)
>>>> 2019-07-17 07:06:00 WARN AbstractMongoProcess:108 - could not stop
>>>> mongod with db command, try next
>>>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:06:00.736-0400 I CONTROL [signalProcessingThread] got
>> signal
>>>> 2 (Interrupt), will terminate after current cmd ends[mongod output]
>>>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread]
>> shutdown:
>>>> going to close listening sockets...[mongod output]
>>>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread]
>> removing
>>>> socket file: /tmp/mongodb-27017.sock[mongod output]
>>>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:06:00.737-0400 I FTDC [signalProcessingThread]
>> Shutting
>>>> down full-time diagnostic data capture[mongod output]
>>>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:06:00.739-0400 I STORAGE [signalProcessingThread]
>>>> WiredTigerKVEngine shutting down[mongod output]
>>>> 2019-07-17 07:06:00 INFO ProcessControl:239 - execSuccess: true [kill,
>>>> -2, 4675]
>>>> 2019-07-17 07:06:00 INFO ProcessControl:101 - stopOrDestroyProcess:
>>>> process hasn't exited
>>>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:06:00.762-0400 I STORAGE [signalProcessingThread]
>> shutdown:
>>>> removing fs lock...[mongod output]
>>>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread] now
>>>> exiting[mongod output]
>>>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>>>> 2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread]
>> shutting
>>>> down with code:0[mongod output]
>>>>
>>>> Results :
>>>>
>>>> Tests in error:
>>>> MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed
>> out
>>>> after ...
>>>> MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed
>> out
>>>> after ...
>>>> PcjDocumentsWithMockTest>MongoITBase.setupTest:39 » MongoTimeout Timed
>>>> out aft...
>>>>
>>>> Tests run: 43, Failures: 0, Errors: 3, Skipped: 0
>>>>
>>>> [INFO]
>>>> ------------------------------------------------------------------------
>>>> [INFO] Reactor Summary for Apache Rya Project 4.0.0-incubating:
>>>> [INFO]
>>>> [INFO] Apache Rya Project ................................. SUCCESS [
>>>> 4.927 s]
>>>> [INFO] Apache Rya Common Projects ......................... SUCCESS [
>>>> 0.687 s]
>>>> [INFO] Apache Rya Common API .............................. SUCCESS [
>>>> 14.772 s]
>>>> [INFO] Apache Rya Common API - Models ..................... SUCCESS [
>>>> 4.443 s]
>>>> [INFO] Apache Rya Common API - Evaluation Functions ....... SUCCESS [
>>>> 5.531 s]
>>>> [INFO] Apache Rya Provenance .............................. SUCCESS [
>>>> 10.210 s]
>>>> [INFO] Apache Rya Test Parent ............................. SUCCESS [
>>>> 0.595 s]
>>>> [INFO] Apache Rya Test Accumulo ........................... SUCCESS [
>>>> 7.810 s]
>>>> [INFO] Apache Rya DAO Projects ............................ SUCCESS [
>>>> 0.674 s]
>>>> [INFO] Apache Rya Accumulo DAO ............................ SUCCESS [
>>>> 13.779 s]
>>>> [INFO] Apache Rya Test Mongo DB ........................... SUCCESS [
>>>> 4.254 s]
>>>> [INFO] Apache Rya MongoDB DAO ............................. SUCCESS [
>>>> 12.126 s]
>>>> [INFO] Apache Rya Extra Projects .......................... SUCCESS [
>>>> 0.720 s]
>>>> [INFO] Apache Rya Prospector .............................. SUCCESS [
>>>> 42.274 s]
>>>> [INFO] Apache Rya Manual .................................. SUCCESS [
>>>> 1.033 s]
>>>> [INFO] Apache Rya SAIL .................................... SUCCESS [
>>>> 17.715 s]
>>>> [INFO] Apache Rya PCJ Core ................................ FAILURE
>>>> [01:41 min]
>>>> [INFO] Apache Rya Periodic Notification Parent ............ SKIPPED
>>>> [INFO] Apache Rya Periodic Notification API ............... SKIPPED
>>>> [INFO] Apache Rya PCJ Fluo Parent ......................... SKIPPED
>>>> [INFO] Apache Rya PCJ Fluo App ............................ SKIPPED
>>>> [INFO] Apache Rya PCJ Fluo API ............................ SKIPPED
>>>> [INFO] Apache Rya Secondary Indexing ...................... SKIPPED
>>>> [INFO] Apache Rya Periodic Notification Service ........... SKIPPED
>>>> [INFO] Apache Rya Periodic Notification Service on Twill .. SKIPPED
>>>> [INFO] Apache Rya Periodic Notification Service on Twill on YARN SKIPPED
>>>> [INFO] Apache Rya Test Kafka .............................. SKIPPED
>>>> [INFO] Apache Rya PCJ Fluo Client ......................... SKIPPED
>>>> [INFO] Apache Rya Integration Base ........................ SKIPPED
>>>> [INFO] Apache Rya Periodic Notification Service Integration Tests
>> SKIPPED
>>>> [INFO] Apache Rya Streams Parent .......................... SKIPPED
>>>> [INFO] Apache Rya Streams API ............................. SKIPPED
>>>> [INFO] Apache Rya Test RDF ................................ SKIPPED
>>>> [INFO] Apache Rya Streams Kafka ........................... SKIPPED
>>>> [INFO] Apache Rya Shell ................................... SKIPPED
>>>> [INFO] Apache Rya Secondary Indexing Example .............. SKIPPED
>>>> [INFO] Apache Rya MapReduce Tools ......................... SKIPPED
>>>> [INFO] Apache Rya Reasoning ............................... SKIPPED
>>>> [INFO] Apache Rya Vagrant VM .............................. SKIPPED
>>>> [INFO] Apache Rya PCJ Fluo Integration Tests .............. SKIPPED
>>>> [INFO] Apache Rya PCJ Fluo Demo ........................... SKIPPED
>>>> [INFO] Apache Rya Export Parent ........................... SKIPPED
>>>> [INFO] Apache Rya Export API .............................. SKIPPED
>>>> [INFO] Apache Rya Export Accumulo ......................... SKIPPED
>>>> [INFO] Apache Rya Export Mongo ............................ SKIPPED
>>>> [INFO] Apache Rya Export Client ........................... SKIPPED
>>>> [INFO] Apache Rya Export Integration Tests ................ SKIPPED
>>>> [INFO] Apache Rya Merge Tool .............................. SKIPPED
>>>> [INFO] Apache Rya Streams Kafka Test ...................... SKIPPED
>>>> [INFO] Apache Rya Streams Client .......................... SKIPPED
>>>> [INFO] Apache Rya Streams Kafka Integration Tests ......... SKIPPED
>>>> [INFO] Apache Rya Streams Query Manager ................... SKIPPED
>>>> [INFO] Apache Rya Forward Chaining Inference .............. SKIPPED
>>>> [INFO] Apache Rya Kafka Connect Parent .................... SKIPPED
>>>> [INFO] Apache Rya Kafka Connect - API ..................... SKIPPED
>>>> [INFO] Apache Rya Kafka Connect - Accumulo ................ SKIPPED
>>>> [INFO] Apache Rya Kafka Connect - Accumulo Integration Tests SKIPPED
>>>> [INFO] Apache Rya Kafka Connect - Mongo DB ................ SKIPPED
>>>> [INFO] Apache Rya Kafka Connect - Mongo DB Integration Tests SKIPPED
>>>> [INFO] Apache Rya Kafka Connect - Client .................. SKIPPED
>>>> [INFO] Apache Rya OSGI Bundle ............................. SKIPPED
>>>> [INFO] Apache Rya ALX ..................................... SKIPPED
>>>> [INFO] Apache Rya ALX Console ............................. SKIPPED
>>>> [INFO] Apache Rya Camel ................................... SKIPPED
>>>> [INFO] Apache Rya Pig Projects ............................ SKIPPED
>>>> [INFO] Apache Rya Accumulo Pig ............................ SKIPPED
>>>> [INFO] Apache Rya Spark Support ........................... SKIPPED
>>>> [INFO] Apache Rya Web Projects ............................ SKIPPED
>>>> [INFO] Apache Rya Web Implementation ...................... SKIPPED
>>>> [INFO]
>>>> ------------------------------------------------------------------------
>>>> [INFO] BUILD FAILURE
>>>> [INFO]
>>>> ------------------------------------------------------------------------
>>>> [INFO] Total time: 04:03 min
>>>> [INFO] Finished at: 2019-07-17T07:06:00-04:00
>>>> [INFO]
>>>> ------------------------------------------------------------------------
>>>> [ERROR] Failed to execute goal
>>>> org.apache.maven.plugins:maven-surefire-plugin:2.18.1:test
>> (default-test)
>>>> on project rya.indexing.pcj: There are test failures.
>>>> [ERROR]
>>>> [ERROR] Please refer to
>>>>
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
>>>> for the individual test results.
>>>> [ERROR] -> [Help 1]
>>>> [ERROR]
>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with the
>>>> -e switch.
>>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>>>> [ERROR]
>>>> [ERROR] For more information about the errors and possible solutions,
>>>> please read the following articles:
>>>> [ERROR] [Help 1]
>>>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>>>> [ERROR]
>>>>
>>>>
>>>> On Tue, Jul 16, 2019 at 10:55 AM Aaron D. Mihalik <
>>>> aaron.mihalik@gmail.com> wrote:
>>>>
>>>>> I am pleased to be calling this vote for the source release of Apache
>> Rya
>>>>> (Incubating), version 4.0.0.
>>>>>
>>>>> The source zip, including signatures, digests, etc. can be found at:
>>>>>
>>>>>
>> https://dist.apache.org/repos/dist/dev/incubator/rya/rya-incubating-4.0.0-rc1/
>>>>>
>>>>> Ancillary artifacts such as poms, jars, wars, ect. can be found here:
>>>>>
>>>>>
>> https://repository.apache.org/content/repositories/orgapacherya-1011/org/apache/rya/
>>>>>
>>>>> The Git tag is rya-incubating-4.0.0-rc1
>>>>> The Git commit ID is 824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>>>>>
>>>>>
>> https://gitbox.apache.org/repos/asf?p=incubator-rya.git;a=commit;h=824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>>>>>
>>>>> Checksums of rya-project-4.0.0-source-release.zip:
>>>>> SHA1: e5e91b19abddbdf3c9f0e18469433e730bef7957
>>>>> MD5: 1d46620a37df803c3ba0b1b383c1da10
>>>>>
>>>>> Release artifacts are signed with the following key:
>>>>> https://people.apache.org/keys/committer/mihalik.asc
>>>>>
>>>>> KEYS file available here:
>>>>> https://dist.apache.org/repos/dist/release/incubator/rya/KEYS
>>>>>
>>>>> Issues that were closed/resolved for this release are here:
>>>>>
>>>>>
>> https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12319020&version=12341289
>>>>>
>>>>>
>>>>> The vote will be open for 72 hours and close at 11:00 AM Friday, July
>> 19,
>>>>> 2019 (EDT).
>>>>> Please download the release candidate and evaluate the necessary items
>>>>> including checking hashes, signatures, build from source, and test.
>> Then
>>>>> please vote:
>>>>>
>>>>> [ ] +1 Release this package as rya-project-4.0.0
>>>>> [ ] +0 no opinion
>>>>> [ ] -1 Do not release this package because because...
>>>>>
>>>>
>>>>
>>>> --
>>>> Dr. Adina Crainiceanu
>>>> Associate Professor
>>>> Computer Science Department
>>>> United States Naval Academy
>>>> 410-293-6822
>>>> adina@usna.edu
>>>> http://www.usna.edu/Users/cs/adina/
>>>>
>>>
>>
Re: [VOTE] Release Rya (Incubating) version 4.0.0 RC1
Posted by Jeff Dasch <hc...@gmail.com>.
+1 (non-binding)
Verified checksums match for source release. I found a couple issues with
flaky integration tests, but they can probably just be logged in JIRA.
I had no issues when I used docker to verify the build with this command:
docker run -it --rm
-v /path/to/blank-m2-cache:/root/.m2 \
-v "$(pwd)":/usr/src/rya \
-w /usr/src/rya \
maven:3.6.1-jdk-8 \
mvn clean install -P geoindexing,benchmark,giraph
I did run into some issues when I tried running a complete build with all
profiles enabled:
mvn clean install -P geoindexing,benchmark,giraph,enable-it
I had to -rf from rya.pcj.fluo.integration, rya.streams.client, and
rya.streams.integration as there were some timeout issues that caused the
builds to fail. I suppose it could be docker related, or some IT
dependencies aren't getting cleaned up properly during teardown.
Ultimately, I was not able to get rya.streams.client to build with all of
those profiles in docker.
I also ran it against an internal build server and it logged 3 IT failures:
org.apache.rya.streams.client.command.AddQueryCommandIT.longParams
org.apache.rya.streams.client.command.RunQueryCommandIT.runQueryFromFile
org.apache.rya.streams.client.command.RunQueryCommandIT.runQuery
I exercised those IT's individually and found that RunQueryCommandIT seemed
to hang forever, but AddQueryComandIT passed. RunQueryCommandIT has some
threading and joins, so we might want to put an additional timeout in so it
fails faster instead of failing with the maven-failsafe-plugin's timeout.
Finally, the kafka and zookeeper loggers are configured to log at the debug
level during the build which dumps out a lot of unnecessary logging
statements. We might want to turn that off or down as it will help
speed-up builds.
On Thu, Jul 18, 2019 at 11:04 AM Aaron D. Mihalik <mi...@alum.mit.edu>
wrote:
> All,
>
> The vote will close in less than 24 hours at 11:00 AM Friday, July 19, 2019
> (EDT).
>
> Please download the release candidate and evaluate the necessary items
> including checking hashes, signatures, build from source, and test. Then
> please vote:
>
> [ ] +1 Release this package as rya-project-4.0.0
> [ ] +0 no opinion
> [ ] -1 Do not release this package because because...
>
> On Wed, Jul 17, 2019 at 3:05 PM Aaron D. Mihalik <mi...@alum.mit.edu>
> wrote:
>
> > Adina,
> >
> > Thanks for taking the time to build and verify the release.
> >
> > - Notice Issue:
> >
> > I'll commit a change to master, but I don't think this should hold up the
> > release. If you (or others) think it's an issue, toss a '-1' vote on
> this
> > thread and that'll force em to fix it in the release :)
> >
> > - Release Notes:
> >
> > I'll double check all of the release notes and fix them. I don't think
> > this an issue to hold up the release (the notes aren't actually part of
> the
> > release, and 'll probably have them fixed before the end of the vote).
> >
> > - Build issues:
> >
> > Try using the flag -DskipTests (I don't think -Dskip-tests is valid).
> >
> > The build issue is related to a test and it appears that the mongo client
> > (Rya) cannot connect to the temporary mongo server that the plug-in sets
> > up. The server seems to start up and binds to localhost. This could be
> a
> > firewall issue or an ip address issue (127.0.1.1 seems like a strange ip
> in
> > the connection string: WRK1065646GOVTu/127.0.1.1:27017).
> >
> > I built Rya and ran all of the tests on both my personal macOS machine
> (in
> > order to sign the code and artifacts) and on AWS Linux on EC2 (for
> > validation). I've included my build notes below.
> >
> > --Aaron
> >
> > AMI: Amazon Linux AMI 2018.03.0 (HVM), SSD Volume Type
> > Instance Type: t3a.xlarge
> >
> > # configure repo to get maven
> > sudo wget
> >
> http://repos.fedorapeople.org/repos/dchen/apache-maven/epel-apache-maven.repo
> > -O /etc/yum.repos.d/epel-apache-maven.repo
> > sudo sed -i s/\$releasever/6/g /etc/yum.repos.d/epel-apache-maven.repo
> >
> > # install maven, java 8 and git
> > sudo yum install -y java-1.8.0-openjdk-devel git apache-maven
> >
> > # change to java 8
> > sudo update-alternatives --set java
> > /usr/lib/jvm/jre-1.8.0-openjdk.x86_64/bin/java
> > sudo update-alternatives --set javac
> > /usr/lib/jvm/java-1.8.0-openjdk.x86_64/bin/javac
> >
> > # This should fail
> > ping $(hostname)
> >
> > # add hostname in /etc/hosts
> > hostname
> > sudo vi /etc/hosts
> >
> > # now this should work
> > ping $(hostname)
> >
> > git clone https://github.com/apache/incubator-rya.git
> > cd incubator-rya
> > mvn clean install
> >
> >
> > On Wed, Jul 17, 2019 at 7:16 AM Adina Crainiceanu <ad...@usna.edu>
> wrote:
> >
> >> Hi,
> >>
> >> I'm leaving on vacation today with no computer access, so I will not be
> >> able to finish testing the release before Monday. This is what I have so
> >> far:
> >>
> >> -name includes incubating
> >> -checksums correct (md5,sha1, sha512) (I did sha1sum filename and md5sum
> >> filename)
> >> -DISCLAIMER exists and has the correct content
> >> -LICENSE exist and has the correct content (if we don't bundle any
> >> dependencies)
> >> -artifacts placed where expected in
> >> https://dist.apache.org/repos/dist/dev/incubator/rya/
> >> -no unexpected binaries in the .zip file
> >>
> >> *-NOTICE needs to change year from 2018 to 2019!!!!*
> >> - *ERROR: cannot build from source, with included tests (I did mvm clean
> >> install and got errors)*
> >>
> >> Additional question: I saw in the notes that Accumulo was upgraded to
> >> 1.9.1, but in the pom the Accumulo version mentioned is 1.6.4. What is
> the
> >> Accumulo version for this release?
> >>
> >> When trying, mvm clean install, I got a build error on rya.indexing.pcj.
> >> How should I build Rya?
> >>
> >> Here is part of the output from mvn clean install -Dskip-tests:
> >> [INFO]
> >> [INFO] --- animal-sniffer-maven-plugin:1.15:check (default) @ rya.sail
> ---
> >> [INFO] Checking unresolved references to
> >> org.codehaus.mojo.signature:java18:1.0
> >> [INFO]
> >> [INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ rya.sail ---
> >> [INFO] Building jar:
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
> >> [INFO]
> >> [INFO] --- maven-site-plugin:3.4:attach-descriptor (attach-descriptor) @
> >> rya.sail ---
> >> [INFO]
> >> [INFO] --- maven-source-plugin:2.4:jar-no-fork (attach-sources) @
> >> rya.sail ---
> >> [INFO] Building jar:
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
> >> [INFO]
> >> [INFO] --- maven-failsafe-plugin:2.18.1:integration-test (default) @
> >> rya.sail ---
> >> [INFO] Tests are skipped.
> >> [INFO]
> >> [INFO] --- maven-failsafe-plugin:2.18.1:verify (default) @ rya.sail ---
> >> [INFO] Tests are skipped.
> >> [INFO]
> >> [INFO] --- maven-checkstyle-plugin:2.17:check (check-style) @ rya.sail
> ---
> >> [INFO]
> >> [INFO] --- maven-install-plugin:2.5.2:install (default-install) @
> >> rya.sail ---
> >> [INFO] Installing
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
> >> to
> >>
> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.jar
> >> [INFO] Installing
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/pom.xml
> >> to
> >>
> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.pom
> >> [INFO] Installing
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
> >> to
> >>
> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating-sources.jar
> >> [INFO]
> >> [INFO] ------------------< org.apache.rya:rya.indexing.pcj
> >> >-------------------
> >> [INFO] Building Apache Rya PCJ Core 4.0.0-incubating
> >> [17/69]
> >> [INFO] --------------------------------[ jar
> >> ]---------------------------------
> >> [INFO]
> >> [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @
> >> rya.indexing.pcj ---
> >> [INFO] Deleting
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target
> >> [INFO]
> >> [INFO] --- apache-rat-plugin:0.11:check (check-licenses) @
> >> rya.indexing.pcj ---
> >> [INFO] 51 implicit excludes (use -debug for more details).
> >> [INFO] Exclude: DEPENDENCIES
> >> [INFO] 42 resources included (use -debug for more details)
> >> [INFO] Rat check: Summary of files. Unapproved: 0 unknown: 0 generated:
> 0
> >> approved: 42 licence.
> >> [INFO]
> >> [INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-mvn) @
> >> rya.indexing.pcj ---
> >> [INFO]
> >> [INFO] --- maven-remote-resources-plugin:1.5:process (default) @
> >> rya.indexing.pcj ---
> >> [INFO]
> >> [INFO] --- maven-resources-plugin:2.7:resources (default-resources) @
> >> rya.indexing.pcj ---
> >> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> >> [INFO] skip non existing resourceDirectory
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/main/resources
> >> [INFO] Copying 3 resources
> >> [INFO]
> >> [INFO] --- maven-compiler-plugin:3.2:compile (default-compile) @
> >> rya.indexing.pcj ---
> >> [INFO] Changes detected - recompiling the module!
> >> [INFO] Compiling 26 source files to
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/classes
> >> [INFO]
> >> [INFO] >>> findbugs-maven-plugin:3.0.5:check (analyze-compile) >
> >> :findbugs @ rya.indexing.pcj >>>
> >> [INFO]
> >> [INFO] --- findbugs-maven-plugin:3.0.5:findbugs (findbugs) @
> >> rya.indexing.pcj ---
> >> [INFO] Fork Value is true
> >> [INFO] Done FindBugs Analysis....
> >> [INFO]
> >> [INFO] <<< findbugs-maven-plugin:3.0.5:check (analyze-compile) <
> >> :findbugs @ rya.indexing.pcj <<<
> >> [INFO]
> >> [INFO]
> >> [INFO] --- findbugs-maven-plugin:3.0.5:check (analyze-compile) @
> >> rya.indexing.pcj ---
> >> [INFO] BugInstance size is 0
> >> [INFO] Error size is 0
> >> [INFO] No errors/warnings found
> >> [INFO]
> >> [INFO] --- maven-resources-plugin:2.7:testResources
> >> (default-testResources) @ rya.indexing.pcj ---
> >> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> >> [INFO] skip non existing resourceDirectory
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/resources
> >> [INFO] Copying 3 resources
> >> [INFO]
> >> [INFO] --- maven-compiler-plugin:3.2:testCompile (default-testCompile) @
> >> rya.indexing.pcj ---
> >> [INFO] Changes detected - recompiling the module!
> >> [INFO] Compiling 15 source files to
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/test-classes
> >> [INFO]
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
> >> Some input files use unchecked or unsafe operations.
> >> [INFO]
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
> >> Recompile with -Xlint:unchecked for details.
> >> [INFO]
> >> [INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @
> >> rya.indexing.pcj ---
> >> [INFO] Surefire report directory:
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
> >>
> >> -------------------------------------------------------
> >> T E S T S
> >> -------------------------------------------------------
> >> Running org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
> >> SLF4J: Class path contains multiple SLF4J bindings.
> >> SLF4J: Found binding in
> >>
> [jar:file:/home/adina/.m2/repository/org/slf4j/slf4j-log4j12/1.7.25/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> >> SLF4J: Found binding in
> >>
> [jar:file:/home/adina/.m2/repository/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> >> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
> >> explanation.
> >> SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 - [mongod
> >> output]2019-07-17T07:04:27.888-0400 I CONTROL [main] note: noprealloc
> may
> >> hurt performance in many applications[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] MongoDB
> starting :
> >> pid=4675 port=27017
> >>
> dbpath=/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203
> >> 64-bit host=WRK1065646GOVTu[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] db version
> >> v4.0.2[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] git version:
> >> fc1573ba18aee42f97a3bb13b67af7d837826b47[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] allocator:
> >> tcmalloc[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] modules:
> >> none[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] build
> >> environment:[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] distarch:
> >> x86_64[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] target_arch:
> >> x86_64[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] options: { net:
> {
> >> port: 27017 }, security: { authorization: "disabled" }, storage: {
> dbPath:
> >>
> "/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing....",
> >> journal: { enabled: false }, mmapv1: { preallocDataFiles: false,
> >> smallFiles: true }, syncPeriodSecs: 0.0 } }[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] [mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** WARNING:
> Using
> >> the XFS filesystem is strongly recommended with the WiredTiger storage
> >> engine[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** See
> >> http://dochub.mongodb.org/core/prodnotes-filesystem[mongod output]
> >> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] wiredtiger_open
> >> config:
> >>
> create,cache_size=3416M,session_max=20000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),statistics_log=(wait=0),verbose=(recovery_progress),,log=(enabled=false),[mongod
> >> output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.494-0400 I STORAGE [initandlisten] WiredTiger
> message
> >> [1563361468:494258][4675:0x7fbf7c5499c0], txn-recover: Set global
> recovery
> >> timestamp: 0[mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.548-0400 I RECOVERY [initandlisten] WiredTiger
> >> recoveryTimestamp. Ts: Timestamp(0, 0)[mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 W STORAGE [initandlisten] Detected
> >> configuration for non-active storage engine mmapv1 when current storage
> >> engine is wiredTiger[mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** WARNING: This
> >> server is bound to localhost.[mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
> Remote
> >> systems will be unable to connect to this server. [mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
> Start
> >> the server with --bind_ip <address> to specify which IP [mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
> >> addresses it should serve responses from, or with --bind_ip_all
> to[mongod
> >> output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
> bind to
> >> all interfaces. If this behavior is desired, start the[mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
> server
> >> with --bind_ip 127.0.0.1 to disable this warning.[mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.692-0400 I STORAGE [initandlisten]
> createCollection:
> >> admin.system.version with provided UUID:
> >> 767d343a-c6cf-4bc8-88ce-ac6616883c91[mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.838-0400 I COMMAND [initandlisten] setting
> >> featureCompatibilityVersion to 4.0[mongod output]
> >> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:28.850-0400 I STORAGE [initandlisten]
> createCollection:
> >> local.startup_log with generated UUID:
> >> 0d2ebf8d-321e-4d9b-9858-a0ed2c288681[mongod output]
> >> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:29.041-0400 I FTDC [initandlisten] Initializing
> >> full-time diagnostic data capture with directory
> >>
> '/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203/diagnostic.data'[mongod
> >> output]
> >> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:29.043-0400 I NETWORK [initandlisten] waiting for
> >> connections on port 27017[mongod output]
> >> 2019-07-17 07:04:29 INFO MongodExecutable:109 - start
> >>
> de.flapdoodle.embed.mongo.config.MongodConfigBuilder$ImmutableMongodConfig@45f45fa1
> >> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:29.044-0400 I STORAGE [LogicalSessionCacheRefresh]
> >> createCollection: config.system.sessions with generated UUID:
> >> 64521141-97ff-41c1-8933-33a1e64a8f34[mongod output]
> >> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh]
> build
> >> index on: config.system.sessions properties: { v: 2, key: { lastUse: 1
> },
> >> name: "lsidTTLIndex", ns: "config.system.sessions", expireAfterSeconds:
> >> 1800 }[mongod output]
> >> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh]
> >> building index using bulk method; build may temporarily use up to 500
> >> megabytes of RAM[mongod output]
> >> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:29.289-0400 I INDEX [LogicalSessionCacheRefresh]
> build
> >> index done. scanned 0 total records. 0 secs[mongod output]
> >> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:04:29.289-0400 I COMMAND [LogicalSessionCacheRefresh]
> >> command config.$cmd command: createIndexes { createIndexes:
> >> "system.sessions", indexes: [ { key: { lastUse: 1 }, name:
> "lsidTTLIndex",
> >> expireAfterSeconds: 1800 } ], $db: "config" } numYields:0 reslen:114
> >> locks:{ Global: { acquireCount: { r: 1, w: 1 } }, Database: {
> acquireCount:
> >> { W: 1 } }, Collection: { acquireCount: { w: 1 } } } protocol:op_msg
> >> 244ms[mongod output]
> >> 2019-07-17 07:04:29 INFO cluster:71 - Cluster created with settings
> >> {hosts=[wrk1065646govtu:27017], mode=SINGLE,
> requiredClusterType=UNKNOWN,
> >> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
> >> 2019-07-17 07:04:29 INFO cluster:76 - Exception in monitor thread while
> >> connecting to server wrk1065646govtu:27017
> >> com.mongodb.MongoSocketOpenException: Exception opening socket
> >> at
> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
> >> at
> >>
> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
> >> at
> >>
> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
> >> at java.lang.Thread.run(Thread.java:748)
> >> Caused by: java.net.ConnectException: Connection refused (Connection
> >> refused)
> >> at java.net.PlainSocketImpl.socketConnect(Native Method)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> >> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> >> at java.net.Socket.connect(Socket.java:589)
> >> at
> >>
> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
> >> at
> >>
> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
> >> at
> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
> >> ... 3 more
> >> 2019-07-17 07:04:29 INFO cluster:71 - Cluster description not yet
> >> available. Waiting for 30000 ms before timing out
> >> 2019-07-17 07:04:59 INFO cluster:71 - Cluster created with settings
> >> {hosts=[wrk1065646govtu:27017], mode=SINGLE,
> requiredClusterType=UNKNOWN,
> >> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
> >> 2019-07-17 07:04:59 INFO cluster:71 - Cluster description not yet
> >> available. Waiting for 30000 ms before timing out
> >> 2019-07-17 07:04:59 INFO cluster:76 - Exception in monitor thread while
> >> connecting to server wrk1065646govtu:27017
> >> com.mongodb.MongoSocketOpenException: Exception opening socket
> >> at
> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
> >> at
> >>
> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
> >> at
> >>
> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
> >> at java.lang.Thread.run(Thread.java:748)
> >> Caused by: java.net.ConnectException: Connection refused (Connection
> >> refused)
> >> at java.net.PlainSocketImpl.socketConnect(Native Method)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> >> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> >> at java.net.Socket.connect(Socket.java:589)
> >> at
> >>
> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
> >> at
> >>
> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
> >> at
> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
> >> ... 3 more
> >> Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 61.988
> >> sec <<< FAILURE! - in
> >> org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
> >>
> pcjToMetadata(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
> >> Time elapsed: 31.971 sec <<< ERROR!
> >> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while
> waiting
> >> to connect. Client view of cluster state is {type=UNKNOWN,
> >> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
> >> exception={com.mongodb.MongoSocketOpenException: Exception opening
> socket},
> >> caused by {java.net.ConnectException: Connection refused (Connection
> >> refused)}}]
> >> at
> >>
> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
> >> at
> >>
> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
> >> at
> >>
> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
> >> at
> >>
> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
> >> at
> >>
> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
> >> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >> at
> >>
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> >> at
> >>
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> >> at java.lang.reflect.Method.invoke(Method.java:498)
> >> at
> >>
> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
> >> at
> >>
> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
> >> at
> >>
> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
> >> at
> >>
> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
> >> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
> >> at
> >>
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
> >> at
> >>
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
> >> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
> >> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
> >> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
> >> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
> >> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
> >> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
> >>
> >>
> metadataExists(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
> >> Time elapsed: 30.003 sec <<< ERROR!
> >> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while
> waiting
> >> to connect. Client view of cluster state is {type=UNKNOWN,
> >> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
> >> exception={com.mongodb.MongoSocketOpenException: Exception opening
> socket},
> >> caused by {java.net.ConnectException: Connection refused (Connection
> >> refused)}}]
> >> at
> >>
> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
> >> at
> >>
> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
> >> at
> >>
> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
> >> at
> >>
> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
> >> at
> >>
> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
> >> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >> at
> >>
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> >> at
> >>
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> >> at java.lang.reflect.Method.invoke(Method.java:498)
> >> at
> >>
> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
> >> at
> >>
> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
> >> at
> >>
> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
> >> at
> >>
> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
> >> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
> >> at
> >>
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
> >> at
> >>
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
> >> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
> >> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
> >> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
> >> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
> >> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
> >> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
> >>
> >> Running
> org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
> >> 2019-07-17 07:05:29 INFO cluster:71 - Cluster created with settings
> >> {hosts=[wrk1065646govtu:27017], mode=SINGLE,
> requiredClusterType=UNKNOWN,
> >> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
> >> 2019-07-17 07:05:29 INFO cluster:76 - Exception in monitor thread while
> >> connecting to server wrk1065646govtu:27017
> >> com.mongodb.MongoSocketOpenException: Exception opening socket
> >> at
> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
> >> at
> >>
> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
> >> at
> >>
> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
> >> at java.lang.Thread.run(Thread.java:748)
> >> Caused by: java.net.ConnectException: Connection refused (Connection
> >> refused)
> >> at java.net.PlainSocketImpl.socketConnect(Native Method)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> >> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> >> at java.net.Socket.connect(Socket.java:589)
> >> at
> >>
> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
> >> at
> >>
> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
> >> at
> com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
> >> ... 3 more
> >> 2019-07-17 07:05:29 INFO cluster:71 - Cluster description not yet
> >> available. Waiting for 30000 ms before timing out
> >> Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 29.977
> >> sec <<< FAILURE! - in
> >> org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
> >>
> populatePcj(org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest)
> >> Time elapsed: 29.977 sec <<< ERROR!
> >> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while
> waiting
> >> to connect. Client view of cluster state is {type=UNKNOWN,
> >> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
> >> exception={com.mongodb.MongoSocketOpenException: Exception opening
> socket},
> >> caused by {java.net.ConnectException: Connection refused (Connection
> >> refused)}}]
> >> at
> >>
> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
> >> at
> >>
> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
> >> at
> >>
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
> >> at
> >>
> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
> >> at
> >>
> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
> >> at
> >>
> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
> >> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >> at
> >>
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> >> at
> >>
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> >> at java.lang.reflect.Method.invoke(Method.java:498)
> >> at
> >>
> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
> >> at
> >>
> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
> >> at
> >>
> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
> >> at
> >>
> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
> >> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
> >> at
> >>
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
> >> at
> >>
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
> >> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
> >> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
> >> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
> >> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
> >> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
> >> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
> >> at
> >>
> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
> >> at
> >>
> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
> >>
> >> Running
> org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
> >> 2019-07-17 07:05:59 INFO deprecation:1019 - fs.default.name is
> >> deprecated. Instead, use fs.defaultFS
> >> 2019-07-17 07:05:59 WARN NativeCodeLoader:62 - Unable to load
> >> native-hadoop library for your platform... using builtin-java classes
> where
> >> applicable
> >> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:117 - Shutting down Rya
> >> Connection.
> >> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:119 - Rya Connection
> shut
> >> down.
> >> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:127 - Shutting down Rya
> >> Repo.
> >> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:129 - Rya Repo shut
> down.
> >> Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.089
> sec
> >> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
> >> Running
> >> org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
> >> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001
> sec
> >> - in
> org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
> >> Running
> >>
> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
> >> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021
> sec
> >> - in
> >>
> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
> >> Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
> >> Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005
> sec
> >> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
> >> Running
> >>
> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
> >> Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
> >> in
> >>
> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
> >> Running
> >> org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
> >> Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
> >> in
> org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
> >> Running
> >> org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
> >> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
> >> in org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
> >> Running
> >>
> org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
> >> Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
> >> in
> >>
> org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
> >> 2019-07-17 07:06:00 WARN Mongod:104 - sendShutdown WRK1065646GOVTu/
> >> 127.0.1.1:27017
> >> java.net.ConnectException: Connection refused (Connection refused)
> >> at java.net.PlainSocketImpl.socketConnect(Native Method)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> >> at
> >> java.net
> .AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> >> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> >> at java.net.Socket.connect(Socket.java:589)
> >> at de.flapdoodle.embed.mongo.runtime.Mongod.sendShutdown(Mongod.java:88)
> >> at
> >>
> de.flapdoodle.embed.mongo.AbstractMongoProcess.sendStopToMongoInstance(AbstractMongoProcess.java:133)
> >> at
> >>
> de.flapdoodle.embed.mongo.AbstractMongoProcess.stopInternal(AbstractMongoProcess.java:107)
> >> at
> >>
> de.flapdoodle.embed.process.runtime.AbstractProcess.stop(AbstractProcess.java:177)
> >> at
> de.flapdoodle.embed.process.runtime.Executable.stop(Executable.java:80)
> >> at
> >>
> de.flapdoodle.embed.process.runtime.Executable$JobKiller.run(Executable.java:97)
> >> at java.lang.Thread.run(Thread.java:748)
> >> 2019-07-17 07:06:00 WARN AbstractMongoProcess:108 - could not stop
> >> mongod with db command, try next
> >> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:06:00.736-0400 I CONTROL [signalProcessingThread] got
> signal
> >> 2 (Interrupt), will terminate after current cmd ends[mongod output]
> >> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread]
> shutdown:
> >> going to close listening sockets...[mongod output]
> >> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread]
> removing
> >> socket file: /tmp/mongodb-27017.sock[mongod output]
> >> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:06:00.737-0400 I FTDC [signalProcessingThread]
> Shutting
> >> down full-time diagnostic data capture[mongod output]
> >> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:06:00.739-0400 I STORAGE [signalProcessingThread]
> >> WiredTigerKVEngine shutting down[mongod output]
> >> 2019-07-17 07:06:00 INFO ProcessControl:239 - execSuccess: true [kill,
> >> -2, 4675]
> >> 2019-07-17 07:06:00 INFO ProcessControl:101 - stopOrDestroyProcess:
> >> process hasn't exited
> >> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:06:00.762-0400 I STORAGE [signalProcessingThread]
> shutdown:
> >> removing fs lock...[mongod output]
> >> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread] now
> >> exiting[mongod output]
> >> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> >> 2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread]
> shutting
> >> down with code:0[mongod output]
> >>
> >> Results :
> >>
> >> Tests in error:
> >> MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed
> out
> >> after ...
> >> MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed
> out
> >> after ...
> >> PcjDocumentsWithMockTest>MongoITBase.setupTest:39 » MongoTimeout Timed
> >> out aft...
> >>
> >> Tests run: 43, Failures: 0, Errors: 3, Skipped: 0
> >>
> >> [INFO]
> >> ------------------------------------------------------------------------
> >> [INFO] Reactor Summary for Apache Rya Project 4.0.0-incubating:
> >> [INFO]
> >> [INFO] Apache Rya Project ................................. SUCCESS [
> >> 4.927 s]
> >> [INFO] Apache Rya Common Projects ......................... SUCCESS [
> >> 0.687 s]
> >> [INFO] Apache Rya Common API .............................. SUCCESS [
> >> 14.772 s]
> >> [INFO] Apache Rya Common API - Models ..................... SUCCESS [
> >> 4.443 s]
> >> [INFO] Apache Rya Common API - Evaluation Functions ....... SUCCESS [
> >> 5.531 s]
> >> [INFO] Apache Rya Provenance .............................. SUCCESS [
> >> 10.210 s]
> >> [INFO] Apache Rya Test Parent ............................. SUCCESS [
> >> 0.595 s]
> >> [INFO] Apache Rya Test Accumulo ........................... SUCCESS [
> >> 7.810 s]
> >> [INFO] Apache Rya DAO Projects ............................ SUCCESS [
> >> 0.674 s]
> >> [INFO] Apache Rya Accumulo DAO ............................ SUCCESS [
> >> 13.779 s]
> >> [INFO] Apache Rya Test Mongo DB ........................... SUCCESS [
> >> 4.254 s]
> >> [INFO] Apache Rya MongoDB DAO ............................. SUCCESS [
> >> 12.126 s]
> >> [INFO] Apache Rya Extra Projects .......................... SUCCESS [
> >> 0.720 s]
> >> [INFO] Apache Rya Prospector .............................. SUCCESS [
> >> 42.274 s]
> >> [INFO] Apache Rya Manual .................................. SUCCESS [
> >> 1.033 s]
> >> [INFO] Apache Rya SAIL .................................... SUCCESS [
> >> 17.715 s]
> >> [INFO] Apache Rya PCJ Core ................................ FAILURE
> >> [01:41 min]
> >> [INFO] Apache Rya Periodic Notification Parent ............ SKIPPED
> >> [INFO] Apache Rya Periodic Notification API ............... SKIPPED
> >> [INFO] Apache Rya PCJ Fluo Parent ......................... SKIPPED
> >> [INFO] Apache Rya PCJ Fluo App ............................ SKIPPED
> >> [INFO] Apache Rya PCJ Fluo API ............................ SKIPPED
> >> [INFO] Apache Rya Secondary Indexing ...................... SKIPPED
> >> [INFO] Apache Rya Periodic Notification Service ........... SKIPPED
> >> [INFO] Apache Rya Periodic Notification Service on Twill .. SKIPPED
> >> [INFO] Apache Rya Periodic Notification Service on Twill on YARN SKIPPED
> >> [INFO] Apache Rya Test Kafka .............................. SKIPPED
> >> [INFO] Apache Rya PCJ Fluo Client ......................... SKIPPED
> >> [INFO] Apache Rya Integration Base ........................ SKIPPED
> >> [INFO] Apache Rya Periodic Notification Service Integration Tests
> SKIPPED
> >> [INFO] Apache Rya Streams Parent .......................... SKIPPED
> >> [INFO] Apache Rya Streams API ............................. SKIPPED
> >> [INFO] Apache Rya Test RDF ................................ SKIPPED
> >> [INFO] Apache Rya Streams Kafka ........................... SKIPPED
> >> [INFO] Apache Rya Shell ................................... SKIPPED
> >> [INFO] Apache Rya Secondary Indexing Example .............. SKIPPED
> >> [INFO] Apache Rya MapReduce Tools ......................... SKIPPED
> >> [INFO] Apache Rya Reasoning ............................... SKIPPED
> >> [INFO] Apache Rya Vagrant VM .............................. SKIPPED
> >> [INFO] Apache Rya PCJ Fluo Integration Tests .............. SKIPPED
> >> [INFO] Apache Rya PCJ Fluo Demo ........................... SKIPPED
> >> [INFO] Apache Rya Export Parent ........................... SKIPPED
> >> [INFO] Apache Rya Export API .............................. SKIPPED
> >> [INFO] Apache Rya Export Accumulo ......................... SKIPPED
> >> [INFO] Apache Rya Export Mongo ............................ SKIPPED
> >> [INFO] Apache Rya Export Client ........................... SKIPPED
> >> [INFO] Apache Rya Export Integration Tests ................ SKIPPED
> >> [INFO] Apache Rya Merge Tool .............................. SKIPPED
> >> [INFO] Apache Rya Streams Kafka Test ...................... SKIPPED
> >> [INFO] Apache Rya Streams Client .......................... SKIPPED
> >> [INFO] Apache Rya Streams Kafka Integration Tests ......... SKIPPED
> >> [INFO] Apache Rya Streams Query Manager ................... SKIPPED
> >> [INFO] Apache Rya Forward Chaining Inference .............. SKIPPED
> >> [INFO] Apache Rya Kafka Connect Parent .................... SKIPPED
> >> [INFO] Apache Rya Kafka Connect - API ..................... SKIPPED
> >> [INFO] Apache Rya Kafka Connect - Accumulo ................ SKIPPED
> >> [INFO] Apache Rya Kafka Connect - Accumulo Integration Tests SKIPPED
> >> [INFO] Apache Rya Kafka Connect - Mongo DB ................ SKIPPED
> >> [INFO] Apache Rya Kafka Connect - Mongo DB Integration Tests SKIPPED
> >> [INFO] Apache Rya Kafka Connect - Client .................. SKIPPED
> >> [INFO] Apache Rya OSGI Bundle ............................. SKIPPED
> >> [INFO] Apache Rya ALX ..................................... SKIPPED
> >> [INFO] Apache Rya ALX Console ............................. SKIPPED
> >> [INFO] Apache Rya Camel ................................... SKIPPED
> >> [INFO] Apache Rya Pig Projects ............................ SKIPPED
> >> [INFO] Apache Rya Accumulo Pig ............................ SKIPPED
> >> [INFO] Apache Rya Spark Support ........................... SKIPPED
> >> [INFO] Apache Rya Web Projects ............................ SKIPPED
> >> [INFO] Apache Rya Web Implementation ...................... SKIPPED
> >> [INFO]
> >> ------------------------------------------------------------------------
> >> [INFO] BUILD FAILURE
> >> [INFO]
> >> ------------------------------------------------------------------------
> >> [INFO] Total time: 04:03 min
> >> [INFO] Finished at: 2019-07-17T07:06:00-04:00
> >> [INFO]
> >> ------------------------------------------------------------------------
> >> [ERROR] Failed to execute goal
> >> org.apache.maven.plugins:maven-surefire-plugin:2.18.1:test
> (default-test)
> >> on project rya.indexing.pcj: There are test failures.
> >> [ERROR]
> >> [ERROR] Please refer to
> >>
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
> >> for the individual test results.
> >> [ERROR] -> [Help 1]
> >> [ERROR]
> >> [ERROR] To see the full stack trace of the errors, re-run Maven with the
> >> -e switch.
> >> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
> >> [ERROR]
> >> [ERROR] For more information about the errors and possible solutions,
> >> please read the following articles:
> >> [ERROR] [Help 1]
> >> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
> >> [ERROR]
> >>
> >>
> >> On Tue, Jul 16, 2019 at 10:55 AM Aaron D. Mihalik <
> >> aaron.mihalik@gmail.com> wrote:
> >>
> >>> I am pleased to be calling this vote for the source release of Apache
> Rya
> >>> (Incubating), version 4.0.0.
> >>>
> >>> The source zip, including signatures, digests, etc. can be found at:
> >>>
> >>>
> https://dist.apache.org/repos/dist/dev/incubator/rya/rya-incubating-4.0.0-rc1/
> >>>
> >>> Ancillary artifacts such as poms, jars, wars, ect. can be found here:
> >>>
> >>>
> https://repository.apache.org/content/repositories/orgapacherya-1011/org/apache/rya/
> >>>
> >>> The Git tag is rya-incubating-4.0.0-rc1
> >>> The Git commit ID is 824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
> >>>
> >>>
> https://gitbox.apache.org/repos/asf?p=incubator-rya.git;a=commit;h=824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
> >>>
> >>> Checksums of rya-project-4.0.0-source-release.zip:
> >>> SHA1: e5e91b19abddbdf3c9f0e18469433e730bef7957
> >>> MD5: 1d46620a37df803c3ba0b1b383c1da10
> >>>
> >>> Release artifacts are signed with the following key:
> >>> https://people.apache.org/keys/committer/mihalik.asc
> >>>
> >>> KEYS file available here:
> >>> https://dist.apache.org/repos/dist/release/incubator/rya/KEYS
> >>>
> >>> Issues that were closed/resolved for this release are here:
> >>>
> >>>
> https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12319020&version=12341289
> >>>
> >>>
> >>> The vote will be open for 72 hours and close at 11:00 AM Friday, July
> 19,
> >>> 2019 (EDT).
> >>> Please download the release candidate and evaluate the necessary items
> >>> including checking hashes, signatures, build from source, and test.
> Then
> >>> please vote:
> >>>
> >>> [ ] +1 Release this package as rya-project-4.0.0
> >>> [ ] +0 no opinion
> >>> [ ] -1 Do not release this package because because...
> >>>
> >>
> >>
> >> --
> >> Dr. Adina Crainiceanu
> >> Associate Professor
> >> Computer Science Department
> >> United States Naval Academy
> >> 410-293-6822
> >> adina@usna.edu
> >> http://www.usna.edu/Users/cs/adina/
> >>
> >
>
Re: [VOTE] Release Rya (Incubating) version 4.0.0 RC1
Posted by "Aaron D. Mihalik" <mi...@alum.mit.edu>.
All,
The vote will close in less than 24 hours at 11:00 AM Friday, July 19, 2019
(EDT).
Please download the release candidate and evaluate the necessary items
including checking hashes, signatures, build from source, and test. Then
please vote:
[ ] +1 Release this package as rya-project-4.0.0
[ ] +0 no opinion
[ ] -1 Do not release this package because because...
On Wed, Jul 17, 2019 at 3:05 PM Aaron D. Mihalik <mi...@alum.mit.edu>
wrote:
> Adina,
>
> Thanks for taking the time to build and verify the release.
>
> - Notice Issue:
>
> I'll commit a change to master, but I don't think this should hold up the
> release. If you (or others) think it's an issue, toss a '-1' vote on this
> thread and that'll force em to fix it in the release :)
>
> - Release Notes:
>
> I'll double check all of the release notes and fix them. I don't think
> this an issue to hold up the release (the notes aren't actually part of the
> release, and 'll probably have them fixed before the end of the vote).
>
> - Build issues:
>
> Try using the flag -DskipTests (I don't think -Dskip-tests is valid).
>
> The build issue is related to a test and it appears that the mongo client
> (Rya) cannot connect to the temporary mongo server that the plug-in sets
> up. The server seems to start up and binds to localhost. This could be a
> firewall issue or an ip address issue (127.0.1.1 seems like a strange ip in
> the connection string: WRK1065646GOVTu/127.0.1.1:27017).
>
> I built Rya and ran all of the tests on both my personal macOS machine (in
> order to sign the code and artifacts) and on AWS Linux on EC2 (for
> validation). I've included my build notes below.
>
> --Aaron
>
> AMI: Amazon Linux AMI 2018.03.0 (HVM), SSD Volume Type
> Instance Type: t3a.xlarge
>
> # configure repo to get maven
> sudo wget
> http://repos.fedorapeople.org/repos/dchen/apache-maven/epel-apache-maven.repo
> -O /etc/yum.repos.d/epel-apache-maven.repo
> sudo sed -i s/\$releasever/6/g /etc/yum.repos.d/epel-apache-maven.repo
>
> # install maven, java 8 and git
> sudo yum install -y java-1.8.0-openjdk-devel git apache-maven
>
> # change to java 8
> sudo update-alternatives --set java
> /usr/lib/jvm/jre-1.8.0-openjdk.x86_64/bin/java
> sudo update-alternatives --set javac
> /usr/lib/jvm/java-1.8.0-openjdk.x86_64/bin/javac
>
> # This should fail
> ping $(hostname)
>
> # add hostname in /etc/hosts
> hostname
> sudo vi /etc/hosts
>
> # now this should work
> ping $(hostname)
>
> git clone https://github.com/apache/incubator-rya.git
> cd incubator-rya
> mvn clean install
>
>
> On Wed, Jul 17, 2019 at 7:16 AM Adina Crainiceanu <ad...@usna.edu> wrote:
>
>> Hi,
>>
>> I'm leaving on vacation today with no computer access, so I will not be
>> able to finish testing the release before Monday. This is what I have so
>> far:
>>
>> -name includes incubating
>> -checksums correct (md5,sha1, sha512) (I did sha1sum filename and md5sum
>> filename)
>> -DISCLAIMER exists and has the correct content
>> -LICENSE exist and has the correct content (if we don't bundle any
>> dependencies)
>> -artifacts placed where expected in
>> https://dist.apache.org/repos/dist/dev/incubator/rya/
>> -no unexpected binaries in the .zip file
>>
>> *-NOTICE needs to change year from 2018 to 2019!!!!*
>> - *ERROR: cannot build from source, with included tests (I did mvm clean
>> install and got errors)*
>>
>> Additional question: I saw in the notes that Accumulo was upgraded to
>> 1.9.1, but in the pom the Accumulo version mentioned is 1.6.4. What is the
>> Accumulo version for this release?
>>
>> When trying, mvm clean install, I got a build error on rya.indexing.pcj.
>> How should I build Rya?
>>
>> Here is part of the output from mvn clean install -Dskip-tests:
>> [INFO]
>> [INFO] --- animal-sniffer-maven-plugin:1.15:check (default) @ rya.sail ---
>> [INFO] Checking unresolved references to
>> org.codehaus.mojo.signature:java18:1.0
>> [INFO]
>> [INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ rya.sail ---
>> [INFO] Building jar:
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
>> [INFO]
>> [INFO] --- maven-site-plugin:3.4:attach-descriptor (attach-descriptor) @
>> rya.sail ---
>> [INFO]
>> [INFO] --- maven-source-plugin:2.4:jar-no-fork (attach-sources) @
>> rya.sail ---
>> [INFO] Building jar:
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
>> [INFO]
>> [INFO] --- maven-failsafe-plugin:2.18.1:integration-test (default) @
>> rya.sail ---
>> [INFO] Tests are skipped.
>> [INFO]
>> [INFO] --- maven-failsafe-plugin:2.18.1:verify (default) @ rya.sail ---
>> [INFO] Tests are skipped.
>> [INFO]
>> [INFO] --- maven-checkstyle-plugin:2.17:check (check-style) @ rya.sail ---
>> [INFO]
>> [INFO] --- maven-install-plugin:2.5.2:install (default-install) @
>> rya.sail ---
>> [INFO] Installing
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
>> to
>> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.jar
>> [INFO] Installing
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/pom.xml
>> to
>> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.pom
>> [INFO] Installing
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
>> to
>> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating-sources.jar
>> [INFO]
>> [INFO] ------------------< org.apache.rya:rya.indexing.pcj
>> >-------------------
>> [INFO] Building Apache Rya PCJ Core 4.0.0-incubating
>> [17/69]
>> [INFO] --------------------------------[ jar
>> ]---------------------------------
>> [INFO]
>> [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @
>> rya.indexing.pcj ---
>> [INFO] Deleting
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target
>> [INFO]
>> [INFO] --- apache-rat-plugin:0.11:check (check-licenses) @
>> rya.indexing.pcj ---
>> [INFO] 51 implicit excludes (use -debug for more details).
>> [INFO] Exclude: DEPENDENCIES
>> [INFO] 42 resources included (use -debug for more details)
>> [INFO] Rat check: Summary of files. Unapproved: 0 unknown: 0 generated: 0
>> approved: 42 licence.
>> [INFO]
>> [INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-mvn) @
>> rya.indexing.pcj ---
>> [INFO]
>> [INFO] --- maven-remote-resources-plugin:1.5:process (default) @
>> rya.indexing.pcj ---
>> [INFO]
>> [INFO] --- maven-resources-plugin:2.7:resources (default-resources) @
>> rya.indexing.pcj ---
>> [INFO] Using 'UTF-8' encoding to copy filtered resources.
>> [INFO] skip non existing resourceDirectory
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/main/resources
>> [INFO] Copying 3 resources
>> [INFO]
>> [INFO] --- maven-compiler-plugin:3.2:compile (default-compile) @
>> rya.indexing.pcj ---
>> [INFO] Changes detected - recompiling the module!
>> [INFO] Compiling 26 source files to
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/classes
>> [INFO]
>> [INFO] >>> findbugs-maven-plugin:3.0.5:check (analyze-compile) >
>> :findbugs @ rya.indexing.pcj >>>
>> [INFO]
>> [INFO] --- findbugs-maven-plugin:3.0.5:findbugs (findbugs) @
>> rya.indexing.pcj ---
>> [INFO] Fork Value is true
>> [INFO] Done FindBugs Analysis....
>> [INFO]
>> [INFO] <<< findbugs-maven-plugin:3.0.5:check (analyze-compile) <
>> :findbugs @ rya.indexing.pcj <<<
>> [INFO]
>> [INFO]
>> [INFO] --- findbugs-maven-plugin:3.0.5:check (analyze-compile) @
>> rya.indexing.pcj ---
>> [INFO] BugInstance size is 0
>> [INFO] Error size is 0
>> [INFO] No errors/warnings found
>> [INFO]
>> [INFO] --- maven-resources-plugin:2.7:testResources
>> (default-testResources) @ rya.indexing.pcj ---
>> [INFO] Using 'UTF-8' encoding to copy filtered resources.
>> [INFO] skip non existing resourceDirectory
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/resources
>> [INFO] Copying 3 resources
>> [INFO]
>> [INFO] --- maven-compiler-plugin:3.2:testCompile (default-testCompile) @
>> rya.indexing.pcj ---
>> [INFO] Changes detected - recompiling the module!
>> [INFO] Compiling 15 source files to
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/test-classes
>> [INFO]
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
>> Some input files use unchecked or unsafe operations.
>> [INFO]
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
>> Recompile with -Xlint:unchecked for details.
>> [INFO]
>> [INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @
>> rya.indexing.pcj ---
>> [INFO] Surefire report directory:
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
>>
>> -------------------------------------------------------
>> T E S T S
>> -------------------------------------------------------
>> Running org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
>> SLF4J: Class path contains multiple SLF4J bindings.
>> SLF4J: Found binding in
>> [jar:file:/home/adina/.m2/repository/org/slf4j/slf4j-log4j12/1.7.25/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
>> SLF4J: Found binding in
>> [jar:file:/home/adina/.m2/repository/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class]
>> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
>> explanation.
>> SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 - [mongod
>> output]2019-07-17T07:04:27.888-0400 I CONTROL [main] note: noprealloc may
>> hurt performance in many applications[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] MongoDB starting :
>> pid=4675 port=27017
>> dbpath=/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203
>> 64-bit host=WRK1065646GOVTu[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] db version
>> v4.0.2[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] git version:
>> fc1573ba18aee42f97a3bb13b67af7d837826b47[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] allocator:
>> tcmalloc[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] modules:
>> none[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] build
>> environment:[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] distarch:
>> x86_64[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] target_arch:
>> x86_64[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] options: { net: {
>> port: 27017 }, security: { authorization: "disabled" }, storage: { dbPath:
>> "/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing....",
>> journal: { enabled: false }, mmapv1: { preallocDataFiles: false,
>> smallFiles: true }, syncPeriodSecs: 0.0 } }[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] [mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** WARNING: Using
>> the XFS filesystem is strongly recommended with the WiredTiger storage
>> engine[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** See
>> http://dochub.mongodb.org/core/prodnotes-filesystem[mongod output]
>> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] wiredtiger_open
>> config:
>> create,cache_size=3416M,session_max=20000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),statistics_log=(wait=0),verbose=(recovery_progress),,log=(enabled=false),[mongod
>> output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.494-0400 I STORAGE [initandlisten] WiredTiger message
>> [1563361468:494258][4675:0x7fbf7c5499c0], txn-recover: Set global recovery
>> timestamp: 0[mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.548-0400 I RECOVERY [initandlisten] WiredTiger
>> recoveryTimestamp. Ts: Timestamp(0, 0)[mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 W STORAGE [initandlisten] Detected
>> configuration for non-active storage engine mmapv1 when current storage
>> engine is wiredTiger[mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** WARNING: This
>> server is bound to localhost.[mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** Remote
>> systems will be unable to connect to this server. [mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** Start
>> the server with --bind_ip <address> to specify which IP [mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
>> addresses it should serve responses from, or with --bind_ip_all to[mongod
>> output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** bind to
>> all interfaces. If this behavior is desired, start the[mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** server
>> with --bind_ip 127.0.0.1 to disable this warning.[mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.692-0400 I STORAGE [initandlisten] createCollection:
>> admin.system.version with provided UUID:
>> 767d343a-c6cf-4bc8-88ce-ac6616883c91[mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.838-0400 I COMMAND [initandlisten] setting
>> featureCompatibilityVersion to 4.0[mongod output]
>> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:28.850-0400 I STORAGE [initandlisten] createCollection:
>> local.startup_log with generated UUID:
>> 0d2ebf8d-321e-4d9b-9858-a0ed2c288681[mongod output]
>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:29.041-0400 I FTDC [initandlisten] Initializing
>> full-time diagnostic data capture with directory
>> '/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203/diagnostic.data'[mongod
>> output]
>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:29.043-0400 I NETWORK [initandlisten] waiting for
>> connections on port 27017[mongod output]
>> 2019-07-17 07:04:29 INFO MongodExecutable:109 - start
>> de.flapdoodle.embed.mongo.config.MongodConfigBuilder$ImmutableMongodConfig@45f45fa1
>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:29.044-0400 I STORAGE [LogicalSessionCacheRefresh]
>> createCollection: config.system.sessions with generated UUID:
>> 64521141-97ff-41c1-8933-33a1e64a8f34[mongod output]
>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh] build
>> index on: config.system.sessions properties: { v: 2, key: { lastUse: 1 },
>> name: "lsidTTLIndex", ns: "config.system.sessions", expireAfterSeconds:
>> 1800 }[mongod output]
>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh]
>> building index using bulk method; build may temporarily use up to 500
>> megabytes of RAM[mongod output]
>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:29.289-0400 I INDEX [LogicalSessionCacheRefresh] build
>> index done. scanned 0 total records. 0 secs[mongod output]
>> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:04:29.289-0400 I COMMAND [LogicalSessionCacheRefresh]
>> command config.$cmd command: createIndexes { createIndexes:
>> "system.sessions", indexes: [ { key: { lastUse: 1 }, name: "lsidTTLIndex",
>> expireAfterSeconds: 1800 } ], $db: "config" } numYields:0 reslen:114
>> locks:{ Global: { acquireCount: { r: 1, w: 1 } }, Database: { acquireCount:
>> { W: 1 } }, Collection: { acquireCount: { w: 1 } } } protocol:op_msg
>> 244ms[mongod output]
>> 2019-07-17 07:04:29 INFO cluster:71 - Cluster created with settings
>> {hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
>> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
>> 2019-07-17 07:04:29 INFO cluster:76 - Exception in monitor thread while
>> connecting to server wrk1065646govtu:27017
>> com.mongodb.MongoSocketOpenException: Exception opening socket
>> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
>> at
>> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
>> at
>> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
>> at java.lang.Thread.run(Thread.java:748)
>> Caused by: java.net.ConnectException: Connection refused (Connection
>> refused)
>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>> at
>> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>> at
>> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>> at
>> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>> at java.net.Socket.connect(Socket.java:589)
>> at
>> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
>> at
>> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
>> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
>> ... 3 more
>> 2019-07-17 07:04:29 INFO cluster:71 - Cluster description not yet
>> available. Waiting for 30000 ms before timing out
>> 2019-07-17 07:04:59 INFO cluster:71 - Cluster created with settings
>> {hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
>> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
>> 2019-07-17 07:04:59 INFO cluster:71 - Cluster description not yet
>> available. Waiting for 30000 ms before timing out
>> 2019-07-17 07:04:59 INFO cluster:76 - Exception in monitor thread while
>> connecting to server wrk1065646govtu:27017
>> com.mongodb.MongoSocketOpenException: Exception opening socket
>> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
>> at
>> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
>> at
>> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
>> at java.lang.Thread.run(Thread.java:748)
>> Caused by: java.net.ConnectException: Connection refused (Connection
>> refused)
>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>> at
>> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>> at
>> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>> at
>> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>> at java.net.Socket.connect(Socket.java:589)
>> at
>> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
>> at
>> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
>> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
>> ... 3 more
>> Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 61.988
>> sec <<< FAILURE! - in
>> org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
>> pcjToMetadata(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
>> Time elapsed: 31.971 sec <<< ERROR!
>> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
>> to connect. Client view of cluster state is {type=UNKNOWN,
>> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
>> exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
>> caused by {java.net.ConnectException: Connection refused (Connection
>> refused)}}]
>> at
>> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
>> at
>> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
>> at
>> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
>> at
>> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
>> at
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
>> at
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
>> at
>> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
>> at
>> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
>> at
>> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
>> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>> at
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>> at
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>> at java.lang.reflect.Method.invoke(Method.java:498)
>> at
>> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
>> at
>> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
>> at
>> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
>> at
>> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
>> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
>> at
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
>> at
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
>> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
>> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
>> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
>> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
>> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
>> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>>
>> metadataExists(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
>> Time elapsed: 30.003 sec <<< ERROR!
>> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
>> to connect. Client view of cluster state is {type=UNKNOWN,
>> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
>> exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
>> caused by {java.net.ConnectException: Connection refused (Connection
>> refused)}}]
>> at
>> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
>> at
>> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
>> at
>> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
>> at
>> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
>> at
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
>> at
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
>> at
>> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
>> at
>> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
>> at
>> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
>> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>> at
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>> at
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>> at java.lang.reflect.Method.invoke(Method.java:498)
>> at
>> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
>> at
>> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
>> at
>> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
>> at
>> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
>> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
>> at
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
>> at
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
>> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
>> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
>> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
>> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
>> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
>> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>>
>> Running org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
>> 2019-07-17 07:05:29 INFO cluster:71 - Cluster created with settings
>> {hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
>> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
>> 2019-07-17 07:05:29 INFO cluster:76 - Exception in monitor thread while
>> connecting to server wrk1065646govtu:27017
>> com.mongodb.MongoSocketOpenException: Exception opening socket
>> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
>> at
>> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
>> at
>> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
>> at java.lang.Thread.run(Thread.java:748)
>> Caused by: java.net.ConnectException: Connection refused (Connection
>> refused)
>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>> at
>> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>> at
>> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>> at
>> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>> at java.net.Socket.connect(Socket.java:589)
>> at
>> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
>> at
>> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
>> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
>> ... 3 more
>> 2019-07-17 07:05:29 INFO cluster:71 - Cluster description not yet
>> available. Waiting for 30000 ms before timing out
>> Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 29.977
>> sec <<< FAILURE! - in
>> org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
>> populatePcj(org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest)
>> Time elapsed: 29.977 sec <<< ERROR!
>> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
>> to connect. Client view of cluster state is {type=UNKNOWN,
>> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
>> exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
>> caused by {java.net.ConnectException: Connection refused (Connection
>> refused)}}]
>> at
>> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
>> at
>> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
>> at
>> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
>> at
>> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
>> at
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
>> at
>> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
>> at
>> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
>> at
>> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
>> at
>> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
>> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>> at
>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>> at
>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>> at java.lang.reflect.Method.invoke(Method.java:498)
>> at
>> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
>> at
>> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
>> at
>> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
>> at
>> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
>> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
>> at
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
>> at
>> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
>> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
>> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
>> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
>> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
>> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
>> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
>> at
>> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
>> at
>> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>>
>> Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
>> 2019-07-17 07:05:59 INFO deprecation:1019 - fs.default.name is
>> deprecated. Instead, use fs.defaultFS
>> 2019-07-17 07:05:59 WARN NativeCodeLoader:62 - Unable to load
>> native-hadoop library for your platform... using builtin-java classes where
>> applicable
>> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:117 - Shutting down Rya
>> Connection.
>> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:119 - Rya Connection shut
>> down.
>> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:127 - Shutting down Rya
>> Repo.
>> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:129 - Rya Repo shut down.
>> Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.089 sec
>> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
>> Running
>> org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
>> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec
>> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
>> Running
>> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
>> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec
>> - in
>> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
>> Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
>> Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec
>> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
>> Running
>> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
>> Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
>> in
>> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
>> Running
>> org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
>> Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
>> in org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
>> Running
>> org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
>> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
>> in org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
>> Running
>> org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
>> Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
>> in
>> org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
>> 2019-07-17 07:06:00 WARN Mongod:104 - sendShutdown WRK1065646GOVTu/
>> 127.0.1.1:27017
>> java.net.ConnectException: Connection refused (Connection refused)
>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>> at
>> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>> at
>> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>> at
>> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>> at java.net.Socket.connect(Socket.java:589)
>> at de.flapdoodle.embed.mongo.runtime.Mongod.sendShutdown(Mongod.java:88)
>> at
>> de.flapdoodle.embed.mongo.AbstractMongoProcess.sendStopToMongoInstance(AbstractMongoProcess.java:133)
>> at
>> de.flapdoodle.embed.mongo.AbstractMongoProcess.stopInternal(AbstractMongoProcess.java:107)
>> at
>> de.flapdoodle.embed.process.runtime.AbstractProcess.stop(AbstractProcess.java:177)
>> at de.flapdoodle.embed.process.runtime.Executable.stop(Executable.java:80)
>> at
>> de.flapdoodle.embed.process.runtime.Executable$JobKiller.run(Executable.java:97)
>> at java.lang.Thread.run(Thread.java:748)
>> 2019-07-17 07:06:00 WARN AbstractMongoProcess:108 - could not stop
>> mongod with db command, try next
>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:06:00.736-0400 I CONTROL [signalProcessingThread] got signal
>> 2 (Interrupt), will terminate after current cmd ends[mongod output]
>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread] shutdown:
>> going to close listening sockets...[mongod output]
>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread] removing
>> socket file: /tmp/mongodb-27017.sock[mongod output]
>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:06:00.737-0400 I FTDC [signalProcessingThread] Shutting
>> down full-time diagnostic data capture[mongod output]
>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:06:00.739-0400 I STORAGE [signalProcessingThread]
>> WiredTigerKVEngine shutting down[mongod output]
>> 2019-07-17 07:06:00 INFO ProcessControl:239 - execSuccess: true [kill,
>> -2, 4675]
>> 2019-07-17 07:06:00 INFO ProcessControl:101 - stopOrDestroyProcess:
>> process hasn't exited
>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:06:00.762-0400 I STORAGE [signalProcessingThread] shutdown:
>> removing fs lock...[mongod output]
>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread] now
>> exiting[mongod output]
>> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
>> 2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread] shutting
>> down with code:0[mongod output]
>>
>> Results :
>>
>> Tests in error:
>> MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed out
>> after ...
>> MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed out
>> after ...
>> PcjDocumentsWithMockTest>MongoITBase.setupTest:39 » MongoTimeout Timed
>> out aft...
>>
>> Tests run: 43, Failures: 0, Errors: 3, Skipped: 0
>>
>> [INFO]
>> ------------------------------------------------------------------------
>> [INFO] Reactor Summary for Apache Rya Project 4.0.0-incubating:
>> [INFO]
>> [INFO] Apache Rya Project ................................. SUCCESS [
>> 4.927 s]
>> [INFO] Apache Rya Common Projects ......................... SUCCESS [
>> 0.687 s]
>> [INFO] Apache Rya Common API .............................. SUCCESS [
>> 14.772 s]
>> [INFO] Apache Rya Common API - Models ..................... SUCCESS [
>> 4.443 s]
>> [INFO] Apache Rya Common API - Evaluation Functions ....... SUCCESS [
>> 5.531 s]
>> [INFO] Apache Rya Provenance .............................. SUCCESS [
>> 10.210 s]
>> [INFO] Apache Rya Test Parent ............................. SUCCESS [
>> 0.595 s]
>> [INFO] Apache Rya Test Accumulo ........................... SUCCESS [
>> 7.810 s]
>> [INFO] Apache Rya DAO Projects ............................ SUCCESS [
>> 0.674 s]
>> [INFO] Apache Rya Accumulo DAO ............................ SUCCESS [
>> 13.779 s]
>> [INFO] Apache Rya Test Mongo DB ........................... SUCCESS [
>> 4.254 s]
>> [INFO] Apache Rya MongoDB DAO ............................. SUCCESS [
>> 12.126 s]
>> [INFO] Apache Rya Extra Projects .......................... SUCCESS [
>> 0.720 s]
>> [INFO] Apache Rya Prospector .............................. SUCCESS [
>> 42.274 s]
>> [INFO] Apache Rya Manual .................................. SUCCESS [
>> 1.033 s]
>> [INFO] Apache Rya SAIL .................................... SUCCESS [
>> 17.715 s]
>> [INFO] Apache Rya PCJ Core ................................ FAILURE
>> [01:41 min]
>> [INFO] Apache Rya Periodic Notification Parent ............ SKIPPED
>> [INFO] Apache Rya Periodic Notification API ............... SKIPPED
>> [INFO] Apache Rya PCJ Fluo Parent ......................... SKIPPED
>> [INFO] Apache Rya PCJ Fluo App ............................ SKIPPED
>> [INFO] Apache Rya PCJ Fluo API ............................ SKIPPED
>> [INFO] Apache Rya Secondary Indexing ...................... SKIPPED
>> [INFO] Apache Rya Periodic Notification Service ........... SKIPPED
>> [INFO] Apache Rya Periodic Notification Service on Twill .. SKIPPED
>> [INFO] Apache Rya Periodic Notification Service on Twill on YARN SKIPPED
>> [INFO] Apache Rya Test Kafka .............................. SKIPPED
>> [INFO] Apache Rya PCJ Fluo Client ......................... SKIPPED
>> [INFO] Apache Rya Integration Base ........................ SKIPPED
>> [INFO] Apache Rya Periodic Notification Service Integration Tests SKIPPED
>> [INFO] Apache Rya Streams Parent .......................... SKIPPED
>> [INFO] Apache Rya Streams API ............................. SKIPPED
>> [INFO] Apache Rya Test RDF ................................ SKIPPED
>> [INFO] Apache Rya Streams Kafka ........................... SKIPPED
>> [INFO] Apache Rya Shell ................................... SKIPPED
>> [INFO] Apache Rya Secondary Indexing Example .............. SKIPPED
>> [INFO] Apache Rya MapReduce Tools ......................... SKIPPED
>> [INFO] Apache Rya Reasoning ............................... SKIPPED
>> [INFO] Apache Rya Vagrant VM .............................. SKIPPED
>> [INFO] Apache Rya PCJ Fluo Integration Tests .............. SKIPPED
>> [INFO] Apache Rya PCJ Fluo Demo ........................... SKIPPED
>> [INFO] Apache Rya Export Parent ........................... SKIPPED
>> [INFO] Apache Rya Export API .............................. SKIPPED
>> [INFO] Apache Rya Export Accumulo ......................... SKIPPED
>> [INFO] Apache Rya Export Mongo ............................ SKIPPED
>> [INFO] Apache Rya Export Client ........................... SKIPPED
>> [INFO] Apache Rya Export Integration Tests ................ SKIPPED
>> [INFO] Apache Rya Merge Tool .............................. SKIPPED
>> [INFO] Apache Rya Streams Kafka Test ...................... SKIPPED
>> [INFO] Apache Rya Streams Client .......................... SKIPPED
>> [INFO] Apache Rya Streams Kafka Integration Tests ......... SKIPPED
>> [INFO] Apache Rya Streams Query Manager ................... SKIPPED
>> [INFO] Apache Rya Forward Chaining Inference .............. SKIPPED
>> [INFO] Apache Rya Kafka Connect Parent .................... SKIPPED
>> [INFO] Apache Rya Kafka Connect - API ..................... SKIPPED
>> [INFO] Apache Rya Kafka Connect - Accumulo ................ SKIPPED
>> [INFO] Apache Rya Kafka Connect - Accumulo Integration Tests SKIPPED
>> [INFO] Apache Rya Kafka Connect - Mongo DB ................ SKIPPED
>> [INFO] Apache Rya Kafka Connect - Mongo DB Integration Tests SKIPPED
>> [INFO] Apache Rya Kafka Connect - Client .................. SKIPPED
>> [INFO] Apache Rya OSGI Bundle ............................. SKIPPED
>> [INFO] Apache Rya ALX ..................................... SKIPPED
>> [INFO] Apache Rya ALX Console ............................. SKIPPED
>> [INFO] Apache Rya Camel ................................... SKIPPED
>> [INFO] Apache Rya Pig Projects ............................ SKIPPED
>> [INFO] Apache Rya Accumulo Pig ............................ SKIPPED
>> [INFO] Apache Rya Spark Support ........................... SKIPPED
>> [INFO] Apache Rya Web Projects ............................ SKIPPED
>> [INFO] Apache Rya Web Implementation ...................... SKIPPED
>> [INFO]
>> ------------------------------------------------------------------------
>> [INFO] BUILD FAILURE
>> [INFO]
>> ------------------------------------------------------------------------
>> [INFO] Total time: 04:03 min
>> [INFO] Finished at: 2019-07-17T07:06:00-04:00
>> [INFO]
>> ------------------------------------------------------------------------
>> [ERROR] Failed to execute goal
>> org.apache.maven.plugins:maven-surefire-plugin:2.18.1:test (default-test)
>> on project rya.indexing.pcj: There are test failures.
>> [ERROR]
>> [ERROR] Please refer to
>> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
>> for the individual test results.
>> [ERROR] -> [Help 1]
>> [ERROR]
>> [ERROR] To see the full stack trace of the errors, re-run Maven with the
>> -e switch.
>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>> [ERROR]
>> [ERROR] For more information about the errors and possible solutions,
>> please read the following articles:
>> [ERROR] [Help 1]
>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>> [ERROR]
>>
>>
>> On Tue, Jul 16, 2019 at 10:55 AM Aaron D. Mihalik <
>> aaron.mihalik@gmail.com> wrote:
>>
>>> I am pleased to be calling this vote for the source release of Apache Rya
>>> (Incubating), version 4.0.0.
>>>
>>> The source zip, including signatures, digests, etc. can be found at:
>>>
>>> https://dist.apache.org/repos/dist/dev/incubator/rya/rya-incubating-4.0.0-rc1/
>>>
>>> Ancillary artifacts such as poms, jars, wars, ect. can be found here:
>>>
>>> https://repository.apache.org/content/repositories/orgapacherya-1011/org/apache/rya/
>>>
>>> The Git tag is rya-incubating-4.0.0-rc1
>>> The Git commit ID is 824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>>>
>>> https://gitbox.apache.org/repos/asf?p=incubator-rya.git;a=commit;h=824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>>>
>>> Checksums of rya-project-4.0.0-source-release.zip:
>>> SHA1: e5e91b19abddbdf3c9f0e18469433e730bef7957
>>> MD5: 1d46620a37df803c3ba0b1b383c1da10
>>>
>>> Release artifacts are signed with the following key:
>>> https://people.apache.org/keys/committer/mihalik.asc
>>>
>>> KEYS file available here:
>>> https://dist.apache.org/repos/dist/release/incubator/rya/KEYS
>>>
>>> Issues that were closed/resolved for this release are here:
>>>
>>> https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12319020&version=12341289
>>>
>>>
>>> The vote will be open for 72 hours and close at 11:00 AM Friday, July 19,
>>> 2019 (EDT).
>>> Please download the release candidate and evaluate the necessary items
>>> including checking hashes, signatures, build from source, and test. Then
>>> please vote:
>>>
>>> [ ] +1 Release this package as rya-project-4.0.0
>>> [ ] +0 no opinion
>>> [ ] -1 Do not release this package because because...
>>>
>>
>>
>> --
>> Dr. Adina Crainiceanu
>> Associate Professor
>> Computer Science Department
>> United States Naval Academy
>> 410-293-6822
>> adina@usna.edu
>> http://www.usna.edu/Users/cs/adina/
>>
>
Re: [VOTE] Release Rya (Incubating) version 4.0.0 RC1
Posted by "Aaron D. Mihalik" <mi...@alum.mit.edu>.
Adina,
Thanks for taking the time to build and verify the release.
- Notice Issue:
I'll commit a change to master, but I don't think this should hold up the
release. If you (or others) think it's an issue, toss a '-1' vote on this
thread and that'll force em to fix it in the release :)
- Release Notes:
I'll double check all of the release notes and fix them. I don't think
this an issue to hold up the release (the notes aren't actually part of the
release, and 'll probably have them fixed before the end of the vote).
- Build issues:
Try using the flag -DskipTests (I don't think -Dskip-tests is valid).
The build issue is related to a test and it appears that the mongo client
(Rya) cannot connect to the temporary mongo server that the plug-in sets
up. The server seems to start up and binds to localhost. This could be a
firewall issue or an ip address issue (127.0.1.1 seems like a strange ip in
the connection string: WRK1065646GOVTu/127.0.1.1:27017).
I built Rya and ran all of the tests on both my personal macOS machine (in
order to sign the code and artifacts) and on AWS Linux on EC2 (for
validation). I've included my build notes below.
--Aaron
AMI: Amazon Linux AMI 2018.03.0 (HVM), SSD Volume Type
Instance Type: t3a.xlarge
# configure repo to get maven
sudo wget
http://repos.fedorapeople.org/repos/dchen/apache-maven/epel-apache-maven.repo
-O /etc/yum.repos.d/epel-apache-maven.repo
sudo sed -i s/\$releasever/6/g /etc/yum.repos.d/epel-apache-maven.repo
# install maven, java 8 and git
sudo yum install -y java-1.8.0-openjdk-devel git apache-maven
# change to java 8
sudo update-alternatives --set java
/usr/lib/jvm/jre-1.8.0-openjdk.x86_64/bin/java
sudo update-alternatives --set javac
/usr/lib/jvm/java-1.8.0-openjdk.x86_64/bin/javac
# This should fail
ping $(hostname)
# add hostname in /etc/hosts
hostname
sudo vi /etc/hosts
# now this should work
ping $(hostname)
git clone https://github.com/apache/incubator-rya.git
cd incubator-rya
mvn clean install
On Wed, Jul 17, 2019 at 7:16 AM Adina Crainiceanu <ad...@usna.edu> wrote:
> Hi,
>
> I'm leaving on vacation today with no computer access, so I will not be
> able to finish testing the release before Monday. This is what I have so
> far:
>
> -name includes incubating
> -checksums correct (md5,sha1, sha512) (I did sha1sum filename and md5sum
> filename)
> -DISCLAIMER exists and has the correct content
> -LICENSE exist and has the correct content (if we don't bundle any
> dependencies)
> -artifacts placed where expected in
> https://dist.apache.org/repos/dist/dev/incubator/rya/
> -no unexpected binaries in the .zip file
>
> *-NOTICE needs to change year from 2018 to 2019!!!!*
> - *ERROR: cannot build from source, with included tests (I did mvm clean
> install and got errors)*
>
> Additional question: I saw in the notes that Accumulo was upgraded to
> 1.9.1, but in the pom the Accumulo version mentioned is 1.6.4. What is the
> Accumulo version for this release?
>
> When trying, mvm clean install, I got a build error on rya.indexing.pcj.
> How should I build Rya?
>
> Here is part of the output from mvn clean install -Dskip-tests:
> [INFO]
> [INFO] --- animal-sniffer-maven-plugin:1.15:check (default) @ rya.sail ---
> [INFO] Checking unresolved references to
> org.codehaus.mojo.signature:java18:1.0
> [INFO]
> [INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ rya.sail ---
> [INFO] Building jar:
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
> [INFO]
> [INFO] --- maven-site-plugin:3.4:attach-descriptor (attach-descriptor) @
> rya.sail ---
> [INFO]
> [INFO] --- maven-source-plugin:2.4:jar-no-fork (attach-sources) @ rya.sail
> ---
> [INFO] Building jar:
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
> [INFO]
> [INFO] --- maven-failsafe-plugin:2.18.1:integration-test (default) @
> rya.sail ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-failsafe-plugin:2.18.1:verify (default) @ rya.sail ---
> [INFO] Tests are skipped.
> [INFO]
> [INFO] --- maven-checkstyle-plugin:2.17:check (check-style) @ rya.sail ---
> [INFO]
> [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ rya.sail
> ---
> [INFO] Installing
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
> to
> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.jar
> [INFO] Installing
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/pom.xml
> to
> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.pom
> [INFO] Installing
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
> to
> /home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating-sources.jar
> [INFO]
> [INFO] ------------------< org.apache.rya:rya.indexing.pcj
> >-------------------
> [INFO] Building Apache Rya PCJ Core 4.0.0-incubating
> [17/69]
> [INFO] --------------------------------[ jar
> ]---------------------------------
> [INFO]
> [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ rya.indexing.pcj
> ---
> [INFO] Deleting
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target
> [INFO]
> [INFO] --- apache-rat-plugin:0.11:check (check-licenses) @
> rya.indexing.pcj ---
> [INFO] 51 implicit excludes (use -debug for more details).
> [INFO] Exclude: DEPENDENCIES
> [INFO] 42 resources included (use -debug for more details)
> [INFO] Rat check: Summary of files. Unapproved: 0 unknown: 0 generated: 0
> approved: 42 licence.
> [INFO]
> [INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-mvn) @
> rya.indexing.pcj ---
> [INFO]
> [INFO] --- maven-remote-resources-plugin:1.5:process (default) @
> rya.indexing.pcj ---
> [INFO]
> [INFO] --- maven-resources-plugin:2.7:resources (default-resources) @
> rya.indexing.pcj ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/main/resources
> [INFO] Copying 3 resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.2:compile (default-compile) @
> rya.indexing.pcj ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 26 source files to
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/classes
> [INFO]
> [INFO] >>> findbugs-maven-plugin:3.0.5:check (analyze-compile) > :findbugs
> @ rya.indexing.pcj >>>
> [INFO]
> [INFO] --- findbugs-maven-plugin:3.0.5:findbugs (findbugs) @
> rya.indexing.pcj ---
> [INFO] Fork Value is true
> [INFO] Done FindBugs Analysis....
> [INFO]
> [INFO] <<< findbugs-maven-plugin:3.0.5:check (analyze-compile) < :findbugs
> @ rya.indexing.pcj <<<
> [INFO]
> [INFO]
> [INFO] --- findbugs-maven-plugin:3.0.5:check (analyze-compile) @
> rya.indexing.pcj ---
> [INFO] BugInstance size is 0
> [INFO] Error size is 0
> [INFO] No errors/warnings found
> [INFO]
> [INFO] --- maven-resources-plugin:2.7:testResources
> (default-testResources) @ rya.indexing.pcj ---
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
> [INFO] skip non existing resourceDirectory
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/resources
> [INFO] Copying 3 resources
> [INFO]
> [INFO] --- maven-compiler-plugin:3.2:testCompile (default-testCompile) @
> rya.indexing.pcj ---
> [INFO] Changes detected - recompiling the module!
> [INFO] Compiling 15 source files to
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/test-classes
> [INFO]
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
> Some input files use unchecked or unsafe operations.
> [INFO]
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
> Recompile with -Xlint:unchecked for details.
> [INFO]
> [INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @
> rya.indexing.pcj ---
> [INFO] Surefire report directory:
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
>
> -------------------------------------------------------
> T E S T S
> -------------------------------------------------------
> Running org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
> SLF4J: Class path contains multiple SLF4J bindings.
> SLF4J: Found binding in
> [jar:file:/home/adina/.m2/repository/org/slf4j/slf4j-log4j12/1.7.25/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> SLF4J: Found binding in
> [jar:file:/home/adina/.m2/repository/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class]
> SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
> explanation.
> SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 - [mongod
> output]2019-07-17T07:04:27.888-0400 I CONTROL [main] note: noprealloc may
> hurt performance in many applications[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] MongoDB starting :
> pid=4675 port=27017
> dbpath=/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203
> 64-bit host=WRK1065646GOVTu[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] db version
> v4.0.2[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] git version:
> fc1573ba18aee42f97a3bb13b67af7d837826b47[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] allocator:
> tcmalloc[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] modules:
> none[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] build
> environment:[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] distarch:
> x86_64[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] target_arch:
> x86_64[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] options: { net: {
> port: 27017 }, security: { authorization: "disabled" }, storage: { dbPath:
> "/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing....",
> journal: { enabled: false }, mmapv1: { preallocDataFiles: false,
> smallFiles: true }, syncPeriodSecs: 0.0 } }[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] [mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** WARNING: Using
> the XFS filesystem is strongly recommended with the WiredTiger storage
> engine[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** See
> http://dochub.mongodb.org/core/prodnotes-filesystem[mongod output]
> 2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] wiredtiger_open
> config:
> create,cache_size=3416M,session_max=20000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),statistics_log=(wait=0),verbose=(recovery_progress),,log=(enabled=false),[mongod
> output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.494-0400 I STORAGE [initandlisten] WiredTiger message
> [1563361468:494258][4675:0x7fbf7c5499c0], txn-recover: Set global recovery
> timestamp: 0[mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.548-0400 I RECOVERY [initandlisten] WiredTiger
> recoveryTimestamp. Ts: Timestamp(0, 0)[mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 W STORAGE [initandlisten] Detected
> configuration for non-active storage engine mmapv1 when current storage
> engine is wiredTiger[mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** WARNING: This
> server is bound to localhost.[mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** Remote
> systems will be unable to connect to this server. [mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** Start
> the server with --bind_ip <address> to specify which IP [mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
> addresses it should serve responses from, or with --bind_ip_all to[mongod
> output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** bind to
> all interfaces. If this behavior is desired, start the[mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** server
> with --bind_ip 127.0.0.1 to disable this warning.[mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.692-0400 I STORAGE [initandlisten] createCollection:
> admin.system.version with provided UUID:
> 767d343a-c6cf-4bc8-88ce-ac6616883c91[mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.838-0400 I COMMAND [initandlisten] setting
> featureCompatibilityVersion to 4.0[mongod output]
> 2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:28.850-0400 I STORAGE [initandlisten] createCollection:
> local.startup_log with generated UUID:
> 0d2ebf8d-321e-4d9b-9858-a0ed2c288681[mongod output]
> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:29.041-0400 I FTDC [initandlisten] Initializing
> full-time diagnostic data capture with directory
> '/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203/diagnostic.data'[mongod
> output]
> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:29.043-0400 I NETWORK [initandlisten] waiting for
> connections on port 27017[mongod output]
> 2019-07-17 07:04:29 INFO MongodExecutable:109 - start
> de.flapdoodle.embed.mongo.config.MongodConfigBuilder$ImmutableMongodConfig@45f45fa1
> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:29.044-0400 I STORAGE [LogicalSessionCacheRefresh]
> createCollection: config.system.sessions with generated UUID:
> 64521141-97ff-41c1-8933-33a1e64a8f34[mongod output]
> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh] build
> index on: config.system.sessions properties: { v: 2, key: { lastUse: 1 },
> name: "lsidTTLIndex", ns: "config.system.sessions", expireAfterSeconds:
> 1800 }[mongod output]
> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh]
> building index using bulk method; build may temporarily use up to 500
> megabytes of RAM[mongod output]
> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:29.289-0400 I INDEX [LogicalSessionCacheRefresh] build
> index done. scanned 0 total records. 0 secs[mongod output]
> 2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:04:29.289-0400 I COMMAND [LogicalSessionCacheRefresh]
> command config.$cmd command: createIndexes { createIndexes:
> "system.sessions", indexes: [ { key: { lastUse: 1 }, name: "lsidTTLIndex",
> expireAfterSeconds: 1800 } ], $db: "config" } numYields:0 reslen:114
> locks:{ Global: { acquireCount: { r: 1, w: 1 } }, Database: { acquireCount:
> { W: 1 } }, Collection: { acquireCount: { w: 1 } } } protocol:op_msg
> 244ms[mongod output]
> 2019-07-17 07:04:29 INFO cluster:71 - Cluster created with settings
> {hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
> 2019-07-17 07:04:29 INFO cluster:76 - Exception in monitor thread while
> connecting to server wrk1065646govtu:27017
> com.mongodb.MongoSocketOpenException: Exception opening socket
> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
> at
> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
> at
> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.net.ConnectException: Connection refused (Connection
> refused)
> at java.net.PlainSocketImpl.socketConnect(Native Method)
> at
> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> at
> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> at
> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> at java.net.Socket.connect(Socket.java:589)
> at
> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
> at
> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
> ... 3 more
> 2019-07-17 07:04:29 INFO cluster:71 - Cluster description not yet
> available. Waiting for 30000 ms before timing out
> 2019-07-17 07:04:59 INFO cluster:71 - Cluster created with settings
> {hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
> 2019-07-17 07:04:59 INFO cluster:71 - Cluster description not yet
> available. Waiting for 30000 ms before timing out
> 2019-07-17 07:04:59 INFO cluster:76 - Exception in monitor thread while
> connecting to server wrk1065646govtu:27017
> com.mongodb.MongoSocketOpenException: Exception opening socket
> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
> at
> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
> at
> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.net.ConnectException: Connection refused (Connection
> refused)
> at java.net.PlainSocketImpl.socketConnect(Native Method)
> at
> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> at
> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> at
> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> at java.net.Socket.connect(Socket.java:589)
> at
> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
> at
> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
> ... 3 more
> Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 61.988 sec
> <<< FAILURE! - in
> org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
> pcjToMetadata(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
> Time elapsed: 31.971 sec <<< ERROR!
> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
> to connect. Client view of cluster state is {type=UNKNOWN,
> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
> exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
> caused by {java.net.ConnectException: Connection refused (Connection
> refused)}}]
> at
> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
> at
> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
> at
> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
> at
> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
> at
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
> at
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
> at
> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
> at
> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
> at
> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at
> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
> at
> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
> at
> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
> at
> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
> at
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
> at
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
> at
> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
> at
> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
> at
> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>
> metadataExists(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
> Time elapsed: 30.003 sec <<< ERROR!
> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
> to connect. Client view of cluster state is {type=UNKNOWN,
> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
> exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
> caused by {java.net.ConnectException: Connection refused (Connection
> refused)}}]
> at
> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
> at
> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
> at
> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
> at
> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
> at
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
> at
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
> at
> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
> at
> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
> at
> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at
> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
> at
> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
> at
> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
> at
> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
> at
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
> at
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
> at
> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
> at
> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
> at
> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>
> Running org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
> 2019-07-17 07:05:29 INFO cluster:71 - Cluster created with settings
> {hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
> serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
> 2019-07-17 07:05:29 INFO cluster:76 - Exception in monitor thread while
> connecting to server wrk1065646govtu:27017
> com.mongodb.MongoSocketOpenException: Exception opening socket
> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
> at
> com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
> at
> com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.net.ConnectException: Connection refused (Connection
> refused)
> at java.net.PlainSocketImpl.socketConnect(Native Method)
> at
> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> at
> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> at
> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> at java.net.Socket.connect(Socket.java:589)
> at
> com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
> at
> com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
> at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
> ... 3 more
> 2019-07-17 07:05:29 INFO cluster:71 - Cluster description not yet
> available. Waiting for 30000 ms before timing out
> Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 29.977 sec
> <<< FAILURE! - in
> org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
> populatePcj(org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest)
> Time elapsed: 29.977 sec <<< ERROR!
> com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
> to connect. Client view of cluster state is {type=UNKNOWN,
> servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
> exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
> caused by {java.net.ConnectException: Connection refused (Connection
> refused)}}]
> at
> com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
> at
> com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
> at
> com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
> at
> com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
> at
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
> at
> com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
> at
> com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
> at
> com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
> at
> com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
> at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at
> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
> at
> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
> at
> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
> at
> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
> at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
> at
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
> at
> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
> at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
> at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
> at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
> at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
> at
> org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
> at
> org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
> at
> org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
> at
> org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
>
> Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
> 2019-07-17 07:05:59 INFO deprecation:1019 - fs.default.name is
> deprecated. Instead, use fs.defaultFS
> 2019-07-17 07:05:59 WARN NativeCodeLoader:62 - Unable to load
> native-hadoop library for your platform... using builtin-java classes where
> applicable
> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:117 - Shutting down Rya
> Connection.
> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:119 - Rya Connection shut
> down.
> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:127 - Shutting down Rya
> Repo.
> 2019-07-17 07:06:00 INFO PcjTablesWithMockTest:129 - Rya Repo shut down.
> Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.089 sec
> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
> Running
> org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec
> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
> Running
> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec
> - in
> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
> Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
> Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec
> - in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
> Running
> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
> Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec - in
> org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
> Running
> org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
> Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec - in
> org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
> Running
> org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
> Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec - in
> org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
> Running
> org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
> Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec -
> in
> org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
> 2019-07-17 07:06:00 WARN Mongod:104 - sendShutdown WRK1065646GOVTu/
> 127.0.1.1:27017
> java.net.ConnectException: Connection refused (Connection refused)
> at java.net.PlainSocketImpl.socketConnect(Native Method)
> at
> java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
> at
> java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
> at
> java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
> at java.net.Socket.connect(Socket.java:589)
> at de.flapdoodle.embed.mongo.runtime.Mongod.sendShutdown(Mongod.java:88)
> at
> de.flapdoodle.embed.mongo.AbstractMongoProcess.sendStopToMongoInstance(AbstractMongoProcess.java:133)
> at
> de.flapdoodle.embed.mongo.AbstractMongoProcess.stopInternal(AbstractMongoProcess.java:107)
> at
> de.flapdoodle.embed.process.runtime.AbstractProcess.stop(AbstractProcess.java:177)
> at de.flapdoodle.embed.process.runtime.Executable.stop(Executable.java:80)
> at
> de.flapdoodle.embed.process.runtime.Executable$JobKiller.run(Executable.java:97)
> at java.lang.Thread.run(Thread.java:748)
> 2019-07-17 07:06:00 WARN AbstractMongoProcess:108 - could not stop mongod
> with db command, try next
> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:06:00.736-0400 I CONTROL [signalProcessingThread] got signal
> 2 (Interrupt), will terminate after current cmd ends[mongod output]
> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread] shutdown:
> going to close listening sockets...[mongod output]
> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread] removing
> socket file: /tmp/mongodb-27017.sock[mongod output]
> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:06:00.737-0400 I FTDC [signalProcessingThread] Shutting
> down full-time diagnostic data capture[mongod output]
> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:06:00.739-0400 I STORAGE [signalProcessingThread]
> WiredTigerKVEngine shutting down[mongod output]
> 2019-07-17 07:06:00 INFO ProcessControl:239 - execSuccess: true [kill,
> -2, 4675]
> 2019-07-17 07:06:00 INFO ProcessControl:101 - stopOrDestroyProcess:
> process hasn't exited
> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:06:00.762-0400 I STORAGE [signalProcessingThread] shutdown:
> removing fs lock...[mongod output]
> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread] now
> exiting[mongod output]
> 2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
> 2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread] shutting
> down with code:0[mongod output]
>
> Results :
>
> Tests in error:
> MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed out
> after ...
> MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed out
> after ...
> PcjDocumentsWithMockTest>MongoITBase.setupTest:39 » MongoTimeout Timed
> out aft...
>
> Tests run: 43, Failures: 0, Errors: 3, Skipped: 0
>
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Reactor Summary for Apache Rya Project 4.0.0-incubating:
> [INFO]
> [INFO] Apache Rya Project ................................. SUCCESS [
> 4.927 s]
> [INFO] Apache Rya Common Projects ......................... SUCCESS [
> 0.687 s]
> [INFO] Apache Rya Common API .............................. SUCCESS [
> 14.772 s]
> [INFO] Apache Rya Common API - Models ..................... SUCCESS [
> 4.443 s]
> [INFO] Apache Rya Common API - Evaluation Functions ....... SUCCESS [
> 5.531 s]
> [INFO] Apache Rya Provenance .............................. SUCCESS [
> 10.210 s]
> [INFO] Apache Rya Test Parent ............................. SUCCESS [
> 0.595 s]
> [INFO] Apache Rya Test Accumulo ........................... SUCCESS [
> 7.810 s]
> [INFO] Apache Rya DAO Projects ............................ SUCCESS [
> 0.674 s]
> [INFO] Apache Rya Accumulo DAO ............................ SUCCESS [
> 13.779 s]
> [INFO] Apache Rya Test Mongo DB ........................... SUCCESS [
> 4.254 s]
> [INFO] Apache Rya MongoDB DAO ............................. SUCCESS [
> 12.126 s]
> [INFO] Apache Rya Extra Projects .......................... SUCCESS [
> 0.720 s]
> [INFO] Apache Rya Prospector .............................. SUCCESS [
> 42.274 s]
> [INFO] Apache Rya Manual .................................. SUCCESS [
> 1.033 s]
> [INFO] Apache Rya SAIL .................................... SUCCESS [
> 17.715 s]
> [INFO] Apache Rya PCJ Core ................................ FAILURE [01:41
> min]
> [INFO] Apache Rya Periodic Notification Parent ............ SKIPPED
> [INFO] Apache Rya Periodic Notification API ............... SKIPPED
> [INFO] Apache Rya PCJ Fluo Parent ......................... SKIPPED
> [INFO] Apache Rya PCJ Fluo App ............................ SKIPPED
> [INFO] Apache Rya PCJ Fluo API ............................ SKIPPED
> [INFO] Apache Rya Secondary Indexing ...................... SKIPPED
> [INFO] Apache Rya Periodic Notification Service ........... SKIPPED
> [INFO] Apache Rya Periodic Notification Service on Twill .. SKIPPED
> [INFO] Apache Rya Periodic Notification Service on Twill on YARN SKIPPED
> [INFO] Apache Rya Test Kafka .............................. SKIPPED
> [INFO] Apache Rya PCJ Fluo Client ......................... SKIPPED
> [INFO] Apache Rya Integration Base ........................ SKIPPED
> [INFO] Apache Rya Periodic Notification Service Integration Tests SKIPPED
> [INFO] Apache Rya Streams Parent .......................... SKIPPED
> [INFO] Apache Rya Streams API ............................. SKIPPED
> [INFO] Apache Rya Test RDF ................................ SKIPPED
> [INFO] Apache Rya Streams Kafka ........................... SKIPPED
> [INFO] Apache Rya Shell ................................... SKIPPED
> [INFO] Apache Rya Secondary Indexing Example .............. SKIPPED
> [INFO] Apache Rya MapReduce Tools ......................... SKIPPED
> [INFO] Apache Rya Reasoning ............................... SKIPPED
> [INFO] Apache Rya Vagrant VM .............................. SKIPPED
> [INFO] Apache Rya PCJ Fluo Integration Tests .............. SKIPPED
> [INFO] Apache Rya PCJ Fluo Demo ........................... SKIPPED
> [INFO] Apache Rya Export Parent ........................... SKIPPED
> [INFO] Apache Rya Export API .............................. SKIPPED
> [INFO] Apache Rya Export Accumulo ......................... SKIPPED
> [INFO] Apache Rya Export Mongo ............................ SKIPPED
> [INFO] Apache Rya Export Client ........................... SKIPPED
> [INFO] Apache Rya Export Integration Tests ................ SKIPPED
> [INFO] Apache Rya Merge Tool .............................. SKIPPED
> [INFO] Apache Rya Streams Kafka Test ...................... SKIPPED
> [INFO] Apache Rya Streams Client .......................... SKIPPED
> [INFO] Apache Rya Streams Kafka Integration Tests ......... SKIPPED
> [INFO] Apache Rya Streams Query Manager ................... SKIPPED
> [INFO] Apache Rya Forward Chaining Inference .............. SKIPPED
> [INFO] Apache Rya Kafka Connect Parent .................... SKIPPED
> [INFO] Apache Rya Kafka Connect - API ..................... SKIPPED
> [INFO] Apache Rya Kafka Connect - Accumulo ................ SKIPPED
> [INFO] Apache Rya Kafka Connect - Accumulo Integration Tests SKIPPED
> [INFO] Apache Rya Kafka Connect - Mongo DB ................ SKIPPED
> [INFO] Apache Rya Kafka Connect - Mongo DB Integration Tests SKIPPED
> [INFO] Apache Rya Kafka Connect - Client .................. SKIPPED
> [INFO] Apache Rya OSGI Bundle ............................. SKIPPED
> [INFO] Apache Rya ALX ..................................... SKIPPED
> [INFO] Apache Rya ALX Console ............................. SKIPPED
> [INFO] Apache Rya Camel ................................... SKIPPED
> [INFO] Apache Rya Pig Projects ............................ SKIPPED
> [INFO] Apache Rya Accumulo Pig ............................ SKIPPED
> [INFO] Apache Rya Spark Support ........................... SKIPPED
> [INFO] Apache Rya Web Projects ............................ SKIPPED
> [INFO] Apache Rya Web Implementation ...................... SKIPPED
> [INFO]
> ------------------------------------------------------------------------
> [INFO] BUILD FAILURE
> [INFO]
> ------------------------------------------------------------------------
> [INFO] Total time: 04:03 min
> [INFO] Finished at: 2019-07-17T07:06:00-04:00
> [INFO]
> ------------------------------------------------------------------------
> [ERROR] Failed to execute goal
> org.apache.maven.plugins:maven-surefire-plugin:2.18.1:test (default-test)
> on project rya.indexing.pcj: There are test failures.
> [ERROR]
> [ERROR] Please refer to
> /home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
> for the individual test results.
> [ERROR] -> [Help 1]
> [ERROR]
> [ERROR] To see the full stack trace of the errors, re-run Maven with the
> -e switch.
> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
> [ERROR]
> [ERROR] For more information about the errors and possible solutions,
> please read the following articles:
> [ERROR] [Help 1]
> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
> [ERROR]
>
>
> On Tue, Jul 16, 2019 at 10:55 AM Aaron D. Mihalik <aa...@gmail.com>
> wrote:
>
>> I am pleased to be calling this vote for the source release of Apache Rya
>> (Incubating), version 4.0.0.
>>
>> The source zip, including signatures, digests, etc. can be found at:
>>
>> https://dist.apache.org/repos/dist/dev/incubator/rya/rya-incubating-4.0.0-rc1/
>>
>> Ancillary artifacts such as poms, jars, wars, ect. can be found here:
>>
>> https://repository.apache.org/content/repositories/orgapacherya-1011/org/apache/rya/
>>
>> The Git tag is rya-incubating-4.0.0-rc1
>> The Git commit ID is 824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>>
>> https://gitbox.apache.org/repos/asf?p=incubator-rya.git;a=commit;h=824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>>
>> Checksums of rya-project-4.0.0-source-release.zip:
>> SHA1: e5e91b19abddbdf3c9f0e18469433e730bef7957
>> MD5: 1d46620a37df803c3ba0b1b383c1da10
>>
>> Release artifacts are signed with the following key:
>> https://people.apache.org/keys/committer/mihalik.asc
>>
>> KEYS file available here:
>> https://dist.apache.org/repos/dist/release/incubator/rya/KEYS
>>
>> Issues that were closed/resolved for this release are here:
>>
>> https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12319020&version=12341289
>>
>>
>> The vote will be open for 72 hours and close at 11:00 AM Friday, July 19,
>> 2019 (EDT).
>> Please download the release candidate and evaluate the necessary items
>> including checking hashes, signatures, build from source, and test. Then
>> please vote:
>>
>> [ ] +1 Release this package as rya-project-4.0.0
>> [ ] +0 no opinion
>> [ ] -1 Do not release this package because because...
>>
>
>
> --
> Dr. Adina Crainiceanu
> Associate Professor
> Computer Science Department
> United States Naval Academy
> 410-293-6822
> adina@usna.edu
> http://www.usna.edu/Users/cs/adina/
>
Re: [VOTE] Release Rya (Incubating) version 4.0.0 RC1
Posted by Adina Crainiceanu <ad...@usna.edu>.
Hi,
I'm leaving on vacation today with no computer access, so I will not be
able to finish testing the release before Monday. This is what I have so
far:
-name includes incubating
-checksums correct (md5,sha1, sha512) (I did sha1sum filename and md5sum
filename)
-DISCLAIMER exists and has the correct content
-LICENSE exist and has the correct content (if we don't bundle any
dependencies)
-artifacts placed where expected in
https://dist.apache.org/repos/dist/dev/incubator/rya/
-no unexpected binaries in the .zip file
*-NOTICE needs to change year from 2018 to 2019!!!!*
- *ERROR: cannot build from source, with included tests (I did mvm clean
install and got errors)*
Additional question: I saw in the notes that Accumulo was upgraded to
1.9.1, but in the pom the Accumulo version mentioned is 1.6.4. What is the
Accumulo version for this release?
When trying, mvm clean install, I got a build error on rya.indexing.pcj.
How should I build Rya?
Here is part of the output from mvn clean install -Dskip-tests:
[INFO]
[INFO] --- animal-sniffer-maven-plugin:1.15:check (default) @ rya.sail ---
[INFO] Checking unresolved references to
org.codehaus.mojo.signature:java18:1.0
[INFO]
[INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ rya.sail ---
[INFO] Building jar:
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
[INFO]
[INFO] --- maven-site-plugin:3.4:attach-descriptor (attach-descriptor) @
rya.sail ---
[INFO]
[INFO] --- maven-source-plugin:2.4:jar-no-fork (attach-sources) @ rya.sail
---
[INFO] Building jar:
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
[INFO]
[INFO] --- maven-failsafe-plugin:2.18.1:integration-test (default) @
rya.sail ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-failsafe-plugin:2.18.1:verify (default) @ rya.sail ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-checkstyle-plugin:2.17:check (check-style) @ rya.sail ---
[INFO]
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ rya.sail
---
[INFO] Installing
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating.jar
to
/home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.jar
[INFO] Installing
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/pom.xml
to
/home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating.pom
[INFO] Installing
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/sail/target/rya.sail-4.0.0-incubating-sources.jar
to
/home/adina/.m2/repository/org/apache/rya/rya.sail/4.0.0-incubating/rya.sail-4.0.0-incubating-sources.jar
[INFO]
[INFO] ------------------< org.apache.rya:rya.indexing.pcj
>-------------------
[INFO] Building Apache Rya PCJ Core 4.0.0-incubating
[17/69]
[INFO] --------------------------------[ jar
]---------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ rya.indexing.pcj
---
[INFO] Deleting
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target
[INFO]
[INFO] --- apache-rat-plugin:0.11:check (check-licenses) @ rya.indexing.pcj
---
[INFO] 51 implicit excludes (use -debug for more details).
[INFO] Exclude: DEPENDENCIES
[INFO] 42 resources included (use -debug for more details)
[INFO] Rat check: Summary of files. Unapproved: 0 unknown: 0 generated: 0
approved: 42 licence.
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-mvn) @
rya.indexing.pcj ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.5:process (default) @
rya.indexing.pcj ---
[INFO]
[INFO] --- maven-resources-plugin:2.7:resources (default-resources) @
rya.indexing.pcj ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/main/resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.2:compile (default-compile) @
rya.indexing.pcj ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 26 source files to
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/classes
[INFO]
[INFO] >>> findbugs-maven-plugin:3.0.5:check (analyze-compile) > :findbugs
@ rya.indexing.pcj >>>
[INFO]
[INFO] --- findbugs-maven-plugin:3.0.5:findbugs (findbugs) @
rya.indexing.pcj ---
[INFO] Fork Value is true
[INFO] Done FindBugs Analysis....
[INFO]
[INFO] <<< findbugs-maven-plugin:3.0.5:check (analyze-compile) < :findbugs
@ rya.indexing.pcj <<<
[INFO]
[INFO]
[INFO] --- findbugs-maven-plugin:3.0.5:check (analyze-compile) @
rya.indexing.pcj ---
[INFO] BugInstance size is 0
[INFO] Error size is 0
[INFO] No errors/warnings found
[INFO]
[INFO] --- maven-resources-plugin:2.7:testResources (default-testResources)
@ rya.indexing.pcj ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.2:testCompile (default-testCompile) @
rya.indexing.pcj ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 15 source files to
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/test-classes
[INFO]
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
Some input files use unchecked or unsafe operations.
[INFO]
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/src/test/java/org/apache/rya/indexing/pcj/storage/accumulo/PcjTablesWithMockTest.java:
Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @
rya.indexing.pcj ---
[INFO] Surefire report directory:
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in
[jar:file:/home/adina/.m2/repository/org/slf4j/slf4j-log4j12/1.7.25/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in
[jar:file:/home/adina/.m2/repository/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
explanation.
SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 - [mongod
output]2019-07-17T07:04:27.888-0400 I CONTROL [main] note: noprealloc may
hurt performance in many applications[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] MongoDB starting :
pid=4675 port=27017
dbpath=/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203
64-bit host=WRK1065646GOVTu[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] db version
v4.0.2[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] git version:
fc1573ba18aee42f97a3bb13b67af7d837826b47[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] allocator:
tcmalloc[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] modules:
none[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] build
environment:[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] distarch:
x86_64[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] target_arch:
x86_64[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I CONTROL [initandlisten] options: { net: {
port: 27017 }, security: { authorization: "disabled" }, storage: { dbPath:
"/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing....",
journal: { enabled: false }, mmapv1: { preallocDataFiles: false,
smallFiles: true }, syncPeriodSecs: 0.0 } }[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] [mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** WARNING: Using
the XFS filesystem is strongly recommended with the WiredTiger storage
engine[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] ** See
http://dochub.mongodb.org/core/prodnotes-filesystem[mongod output]
2019-07-17 07:04:27 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:27.892-0400 I STORAGE [initandlisten] wiredtiger_open
config:
create,cache_size=3416M,session_max=20000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),statistics_log=(wait=0),verbose=(recovery_progress),,log=(enabled=false),[mongod
output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.494-0400 I STORAGE [initandlisten] WiredTiger message
[1563361468:494258][4675:0x7fbf7c5499c0], txn-recover: Set global recovery
timestamp: 0[mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.548-0400 I RECOVERY [initandlisten] WiredTiger
recoveryTimestamp. Ts: Timestamp(0, 0)[mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 W STORAGE [initandlisten] Detected
configuration for non-active storage engine mmapv1 when current storage
engine is wiredTiger[mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** WARNING: This
server is bound to localhost.[mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** Remote
systems will be unable to connect to this server. [mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** Start
the server with --bind_ip <address> to specify which IP [mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] **
addresses it should serve responses from, or with --bind_ip_all to[mongod
output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** bind to
all interfaces. If this behavior is desired, start the[mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] ** server
with --bind_ip 127.0.0.1 to disable this warning.[mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.691-0400 I CONTROL [initandlisten] [mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.692-0400 I STORAGE [initandlisten] createCollection:
admin.system.version with provided UUID:
767d343a-c6cf-4bc8-88ce-ac6616883c91[mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.838-0400 I COMMAND [initandlisten] setting
featureCompatibilityVersion to 4.0[mongod output]
2019-07-17 07:04:28 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:28.850-0400 I STORAGE [initandlisten] createCollection:
local.startup_log with generated UUID:
0d2ebf8d-321e-4d9b-9858-a0ed2c288681[mongod output]
2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:29.041-0400 I FTDC [initandlisten] Initializing
full-time diagnostic data capture with directory
'/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/embedmongo-db-77b97738-cc25-4c15-9152-2c7fc3842203/diagnostic.data'[mongod
output]
2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:29.043-0400 I NETWORK [initandlisten] waiting for
connections on port 27017[mongod output]
2019-07-17 07:04:29 INFO MongodExecutable:109 - start
de.flapdoodle.embed.mongo.config.MongodConfigBuilder$ImmutableMongodConfig@45f45fa1
2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:29.044-0400 I STORAGE [LogicalSessionCacheRefresh]
createCollection: config.system.sessions with generated UUID:
64521141-97ff-41c1-8933-33a1e64a8f34[mongod output]
2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh] build
index on: config.system.sessions properties: { v: 2, key: { lastUse: 1 },
name: "lsidTTLIndex", ns: "config.system.sessions", expireAfterSeconds:
1800 }[mongod output]
2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:29.288-0400 I INDEX [LogicalSessionCacheRefresh]
building index using bulk method; build may temporarily use up to 500
megabytes of RAM[mongod output]
2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:29.289-0400 I INDEX [LogicalSessionCacheRefresh] build
index done. scanned 0 total records. 0 secs[mongod output]
2019-07-17 07:04:29 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:04:29.289-0400 I COMMAND [LogicalSessionCacheRefresh]
command config.$cmd command: createIndexes { createIndexes:
"system.sessions", indexes: [ { key: { lastUse: 1 }, name: "lsidTTLIndex",
expireAfterSeconds: 1800 } ], $db: "config" } numYields:0 reslen:114
locks:{ Global: { acquireCount: { r: 1, w: 1 } }, Database: { acquireCount:
{ W: 1 } }, Collection: { acquireCount: { w: 1 } } } protocol:op_msg
244ms[mongod output]
2019-07-17 07:04:29 INFO cluster:71 - Cluster created with settings
{hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
2019-07-17 07:04:29 INFO cluster:76 - Exception in monitor thread while
connecting to server wrk1065646govtu:27017
com.mongodb.MongoSocketOpenException: Exception opening socket
at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
at
com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
at
com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.ConnectException: Connection refused (Connection
refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at
com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
at
com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
... 3 more
2019-07-17 07:04:29 INFO cluster:71 - Cluster description not yet
available. Waiting for 30000 ms before timing out
2019-07-17 07:04:59 INFO cluster:71 - Cluster created with settings
{hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
2019-07-17 07:04:59 INFO cluster:71 - Cluster description not yet
available. Waiting for 30000 ms before timing out
2019-07-17 07:04:59 INFO cluster:76 - Exception in monitor thread while
connecting to server wrk1065646govtu:27017
com.mongodb.MongoSocketOpenException: Exception opening socket
at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
at
com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
at
com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.ConnectException: Connection refused (Connection
refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at
com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
at
com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
... 3 more
Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 61.988 sec
<<< FAILURE! - in
org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest
pcjToMetadata(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
Time elapsed: 31.971 sec <<< ERROR!
com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
to connect. Client view of cluster state is {type=UNKNOWN,
servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
caused by {java.net.ConnectException: Connection refused (Connection
refused)}}]
at
com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
at
com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
at
com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
at
com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
at
com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
at
com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
at
com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
at
com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
at
com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
at
org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at
org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
at
org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
at
org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
at
org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
at
org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
at
org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
at
org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
at
org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
at
org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
at
org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
metadataExists(org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocumentsTest)
Time elapsed: 30.003 sec <<< ERROR!
com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
to connect. Client view of cluster state is {type=UNKNOWN,
servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
caused by {java.net.ConnectException: Connection refused (Connection
refused)}}]
at
com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
at
com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
at
com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
at
com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
at
com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
at
com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
at
com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
at
com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
at
com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
at
org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at
org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
at
org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
at
org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
at
org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
at
org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
at
org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
at
org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
at
org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
at
org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
at
org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
Running org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
2019-07-17 07:05:29 INFO cluster:71 - Cluster created with settings
{hosts=[wrk1065646govtu:27017], mode=SINGLE, requiredClusterType=UNKNOWN,
serverSelectionTimeout='30000 ms', maxWaitQueueSize=500}
2019-07-17 07:05:29 INFO cluster:76 - Exception in monitor thread while
connecting to server wrk1065646govtu:27017
com.mongodb.MongoSocketOpenException: Exception opening socket
at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:70)
at
com.mongodb.internal.connection.InternalStreamConnection.open(InternalStreamConnection.java:126)
at
com.mongodb.internal.connection.DefaultServerMonitor$ServerMonitorRunnable.run(DefaultServerMonitor.java:117)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.net.ConnectException: Connection refused (Connection
refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at
com.mongodb.internal.connection.SocketStreamHelper.initialize(SocketStreamHelper.java:64)
at
com.mongodb.internal.connection.SocketStream.initializeSocket(SocketStream.java:79)
at com.mongodb.internal.connection.SocketStream.open(SocketStream.java:65)
... 3 more
2019-07-17 07:05:29 INFO cluster:71 - Cluster description not yet
available. Waiting for 30000 ms before timing out
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 29.977 sec
<<< FAILURE! - in
org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest
populatePcj(org.apache.rya.indexing.pcj.storage.mongo.PcjDocumentsWithMockTest)
Time elapsed: 29.977 sec <<< ERROR!
com.mongodb.MongoTimeoutException: Timed out after 30000 ms while waiting
to connect. Client view of cluster state is {type=UNKNOWN,
servers=[{address=wrk1065646govtu:27017, type=UNKNOWN, state=CONNECTING,
exception={com.mongodb.MongoSocketOpenException: Exception opening socket},
caused by {java.net.ConnectException: Connection refused (Connection
refused)}}]
at
com.mongodb.internal.connection.BaseCluster.getDescription(BaseCluster.java:182)
at
com.mongodb.internal.connection.SingleServerCluster.getDescription(SingleServerCluster.java:41)
at
com.mongodb.client.internal.MongoClientDelegate.getConnectedClusterDescription(MongoClientDelegate.java:136)
at
com.mongodb.client.internal.MongoClientDelegate.createClientSession(MongoClientDelegate.java:94)
at
com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.getClientSession(MongoClientDelegate.java:249)
at
com.mongodb.client.internal.MongoClientDelegate$DelegateOperationExecutor.execute(MongoClientDelegate.java:172)
at
com.mongodb.client.internal.MongoIterableImpl.execute(MongoIterableImpl.java:132)
at
com.mongodb.client.internal.MongoIterableImpl.iterator(MongoIterableImpl.java:86)
at
com.mongodb.client.internal.MappingIterable.iterator(MappingIterable.java:39)
at org.apache.rya.test.mongo.MongoITBase.setupTest(MongoITBase.java:39)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:50)
at
org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at
org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:47)
at
org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:24)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:325)
at
org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78)
at
org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268)
at org.junit.runners.ParentRunner.run(ParentRunner.java:363)
at
org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:283)
at
org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:173)
at
org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
at
org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:128)
at
org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:203)
at
org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:155)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
2019-07-17 07:05:59 INFO deprecation:1019 - fs.default.name is deprecated.
Instead, use fs.defaultFS
2019-07-17 07:05:59 WARN NativeCodeLoader:62 - Unable to load
native-hadoop library for your platform... using builtin-java classes where
applicable
2019-07-17 07:06:00 INFO PcjTablesWithMockTest:117 - Shutting down Rya
Connection.
2019-07-17 07:06:00 INFO PcjTablesWithMockTest:119 - Rya Connection shut
down.
2019-07-17 07:06:00 INFO PcjTablesWithMockTest:127 - Shutting down Rya
Repo.
2019-07-17 07:06:00 INFO PcjTablesWithMockTest:129 - Rya Repo shut down.
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.089 sec -
in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesWithMockTest
Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec -
in org.apache.rya.indexing.pcj.storage.accumulo.PcjTableNameFactoryTest
Running
org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec -
in
org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetSerDeTest
Running org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec -
in org.apache.rya.indexing.pcj.storage.accumulo.PcjTablesTest
Running
org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec - in
org.apache.rya.indexing.pcj.storage.accumulo.VisibilityBindingSetStringConverterTest
Running
org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec - in
org.apache.rya.indexing.pcj.storage.accumulo.AccumuloPcjSerializerTest
Running
org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec - in
org.apache.rya.indexing.pcj.storage.accumulo.ShiftVarOrderFactoryTest
Running
org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec - in
org.apache.rya.indexing.pcj.storage.accumulo.BindingSetStringConverterTest
2019-07-17 07:06:00 WARN Mongod:104 - sendShutdown WRK1065646GOVTu/
127.0.1.1:27017
java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at de.flapdoodle.embed.mongo.runtime.Mongod.sendShutdown(Mongod.java:88)
at
de.flapdoodle.embed.mongo.AbstractMongoProcess.sendStopToMongoInstance(AbstractMongoProcess.java:133)
at
de.flapdoodle.embed.mongo.AbstractMongoProcess.stopInternal(AbstractMongoProcess.java:107)
at
de.flapdoodle.embed.process.runtime.AbstractProcess.stop(AbstractProcess.java:177)
at de.flapdoodle.embed.process.runtime.Executable.stop(Executable.java:80)
at
de.flapdoodle.embed.process.runtime.Executable$JobKiller.run(Executable.java:97)
at java.lang.Thread.run(Thread.java:748)
2019-07-17 07:06:00 WARN AbstractMongoProcess:108 - could not stop mongod
with db command, try next
2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:06:00.736-0400 I CONTROL [signalProcessingThread] got signal
2 (Interrupt), will terminate after current cmd ends[mongod output]
2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread] shutdown:
going to close listening sockets...[mongod output]
2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:06:00.736-0400 I NETWORK [signalProcessingThread] removing
socket file: /tmp/mongodb-27017.sock[mongod output]
2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:06:00.737-0400 I FTDC [signalProcessingThread] Shutting
down full-time diagnostic data capture[mongod output]
2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:06:00.739-0400 I STORAGE [signalProcessingThread]
WiredTigerKVEngine shutting down[mongod output]
2019-07-17 07:06:00 INFO ProcessControl:239 - execSuccess: true [kill, -2,
4675]
2019-07-17 07:06:00 INFO ProcessControl:101 - stopOrDestroyProcess:
process hasn't exited
2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:06:00.762-0400 I STORAGE [signalProcessingThread] shutdown:
removing fs lock...[mongod output]
2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread] now
exiting[mongod output]
2019-07-17 07:06:00 INFO EmbeddedMongoFactory:42 -
2019-07-17T07:06:00.762-0400 I CONTROL [signalProcessingThread] shutting
down with code:0[mongod output]
Results :
Tests in error:
MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed out
after ...
MongoPcjDocumentsTest>MongoITBase.setupTest:39 » MongoTimeout Timed out
after ...
PcjDocumentsWithMockTest>MongoITBase.setupTest:39 » MongoTimeout Timed
out aft...
Tests run: 43, Failures: 0, Errors: 3, Skipped: 0
[INFO]
------------------------------------------------------------------------
[INFO] Reactor Summary for Apache Rya Project 4.0.0-incubating:
[INFO]
[INFO] Apache Rya Project ................................. SUCCESS [
4.927 s]
[INFO] Apache Rya Common Projects ......................... SUCCESS [
0.687 s]
[INFO] Apache Rya Common API .............................. SUCCESS [
14.772 s]
[INFO] Apache Rya Common API - Models ..................... SUCCESS [
4.443 s]
[INFO] Apache Rya Common API - Evaluation Functions ....... SUCCESS [
5.531 s]
[INFO] Apache Rya Provenance .............................. SUCCESS [
10.210 s]
[INFO] Apache Rya Test Parent ............................. SUCCESS [
0.595 s]
[INFO] Apache Rya Test Accumulo ........................... SUCCESS [
7.810 s]
[INFO] Apache Rya DAO Projects ............................ SUCCESS [
0.674 s]
[INFO] Apache Rya Accumulo DAO ............................ SUCCESS [
13.779 s]
[INFO] Apache Rya Test Mongo DB ........................... SUCCESS [
4.254 s]
[INFO] Apache Rya MongoDB DAO ............................. SUCCESS [
12.126 s]
[INFO] Apache Rya Extra Projects .......................... SUCCESS [
0.720 s]
[INFO] Apache Rya Prospector .............................. SUCCESS [
42.274 s]
[INFO] Apache Rya Manual .................................. SUCCESS [
1.033 s]
[INFO] Apache Rya SAIL .................................... SUCCESS [
17.715 s]
[INFO] Apache Rya PCJ Core ................................ FAILURE [01:41
min]
[INFO] Apache Rya Periodic Notification Parent ............ SKIPPED
[INFO] Apache Rya Periodic Notification API ............... SKIPPED
[INFO] Apache Rya PCJ Fluo Parent ......................... SKIPPED
[INFO] Apache Rya PCJ Fluo App ............................ SKIPPED
[INFO] Apache Rya PCJ Fluo API ............................ SKIPPED
[INFO] Apache Rya Secondary Indexing ...................... SKIPPED
[INFO] Apache Rya Periodic Notification Service ........... SKIPPED
[INFO] Apache Rya Periodic Notification Service on Twill .. SKIPPED
[INFO] Apache Rya Periodic Notification Service on Twill on YARN SKIPPED
[INFO] Apache Rya Test Kafka .............................. SKIPPED
[INFO] Apache Rya PCJ Fluo Client ......................... SKIPPED
[INFO] Apache Rya Integration Base ........................ SKIPPED
[INFO] Apache Rya Periodic Notification Service Integration Tests SKIPPED
[INFO] Apache Rya Streams Parent .......................... SKIPPED
[INFO] Apache Rya Streams API ............................. SKIPPED
[INFO] Apache Rya Test RDF ................................ SKIPPED
[INFO] Apache Rya Streams Kafka ........................... SKIPPED
[INFO] Apache Rya Shell ................................... SKIPPED
[INFO] Apache Rya Secondary Indexing Example .............. SKIPPED
[INFO] Apache Rya MapReduce Tools ......................... SKIPPED
[INFO] Apache Rya Reasoning ............................... SKIPPED
[INFO] Apache Rya Vagrant VM .............................. SKIPPED
[INFO] Apache Rya PCJ Fluo Integration Tests .............. SKIPPED
[INFO] Apache Rya PCJ Fluo Demo ........................... SKIPPED
[INFO] Apache Rya Export Parent ........................... SKIPPED
[INFO] Apache Rya Export API .............................. SKIPPED
[INFO] Apache Rya Export Accumulo ......................... SKIPPED
[INFO] Apache Rya Export Mongo ............................ SKIPPED
[INFO] Apache Rya Export Client ........................... SKIPPED
[INFO] Apache Rya Export Integration Tests ................ SKIPPED
[INFO] Apache Rya Merge Tool .............................. SKIPPED
[INFO] Apache Rya Streams Kafka Test ...................... SKIPPED
[INFO] Apache Rya Streams Client .......................... SKIPPED
[INFO] Apache Rya Streams Kafka Integration Tests ......... SKIPPED
[INFO] Apache Rya Streams Query Manager ................... SKIPPED
[INFO] Apache Rya Forward Chaining Inference .............. SKIPPED
[INFO] Apache Rya Kafka Connect Parent .................... SKIPPED
[INFO] Apache Rya Kafka Connect - API ..................... SKIPPED
[INFO] Apache Rya Kafka Connect - Accumulo ................ SKIPPED
[INFO] Apache Rya Kafka Connect - Accumulo Integration Tests SKIPPED
[INFO] Apache Rya Kafka Connect - Mongo DB ................ SKIPPED
[INFO] Apache Rya Kafka Connect - Mongo DB Integration Tests SKIPPED
[INFO] Apache Rya Kafka Connect - Client .................. SKIPPED
[INFO] Apache Rya OSGI Bundle ............................. SKIPPED
[INFO] Apache Rya ALX ..................................... SKIPPED
[INFO] Apache Rya ALX Console ............................. SKIPPED
[INFO] Apache Rya Camel ................................... SKIPPED
[INFO] Apache Rya Pig Projects ............................ SKIPPED
[INFO] Apache Rya Accumulo Pig ............................ SKIPPED
[INFO] Apache Rya Spark Support ........................... SKIPPED
[INFO] Apache Rya Web Projects ............................ SKIPPED
[INFO] Apache Rya Web Implementation ...................... SKIPPED
[INFO]
------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO]
------------------------------------------------------------------------
[INFO] Total time: 04:03 min
[INFO] Finished at: 2019-07-17T07:06:00-04:00
[INFO]
------------------------------------------------------------------------
[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-surefire-plugin:2.18.1:test (default-test)
on project rya.indexing.pcj: There are test failures.
[ERROR]
[ERROR] Please refer to
/home/adina/Adina/Research/Rya/ApacheRya/RyaRelease40RC1/rya-project-4.0.0-incubating-source-release/rya-project-4.0.0-incubating/extras/rya.indexing.pcj/target/surefire-reports
for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions,
please read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
On Tue, Jul 16, 2019 at 10:55 AM Aaron D. Mihalik <aa...@gmail.com>
wrote:
> I am pleased to be calling this vote for the source release of Apache Rya
> (Incubating), version 4.0.0.
>
> The source zip, including signatures, digests, etc. can be found at:
>
> https://dist.apache.org/repos/dist/dev/incubator/rya/rya-incubating-4.0.0-rc1/
>
> Ancillary artifacts such as poms, jars, wars, ect. can be found here:
>
> https://repository.apache.org/content/repositories/orgapacherya-1011/org/apache/rya/
>
> The Git tag is rya-incubating-4.0.0-rc1
> The Git commit ID is 824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>
> https://gitbox.apache.org/repos/asf?p=incubator-rya.git;a=commit;h=824090ac1b33c3b4ba52bfb8a67abfdc4f0ceea3
>
> Checksums of rya-project-4.0.0-source-release.zip:
> SHA1: e5e91b19abddbdf3c9f0e18469433e730bef7957
> MD5: 1d46620a37df803c3ba0b1b383c1da10
>
> Release artifacts are signed with the following key:
> https://people.apache.org/keys/committer/mihalik.asc
>
> KEYS file available here:
> https://dist.apache.org/repos/dist/release/incubator/rya/KEYS
>
> Issues that were closed/resolved for this release are here:
>
> https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12319020&version=12341289
>
>
> The vote will be open for 72 hours and close at 11:00 AM Friday, July 19,
> 2019 (EDT).
> Please download the release candidate and evaluate the necessary items
> including checking hashes, signatures, build from source, and test. Then
> please vote:
>
> [ ] +1 Release this package as rya-project-4.0.0
> [ ] +0 no opinion
> [ ] -1 Do not release this package because because...
>
--
Dr. Adina Crainiceanu
Associate Professor
Computer Science Department
United States Naval Academy
410-293-6822
adina@usna.edu
http://www.usna.edu/Users/cs/adina/