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Posted to dev@taverna.apache.org by PARASKEVOPOULOU MARIA <mp...@uth.gr> on 2016/02/08 19:52:58 UTC
Problem on Taverna Plugin Installation
Dear Taverna team,
We have implemented a Taverna plugin incorporating services and
algorithms implemented in the DIANA LAB (www.microrna.gr).
The plugin initially worked for Taverna 2.3, while several months ago
we have updated the plugin and had it functional for both Taverna 2.3
and 2.5 versions.
However, the last month DIANA users complain that they cannot add the
DIANA Taverna plugin in their Taverna workbench.
The installation has been performed several times in the past with success.
We uninstalled the plugin from our server and also observed a failure
in the reinstallation.
We redeployed the plugin but the error remains.
The logs produced in Taverna, report a failure in fetching a Pom file.
"WARN 2015-07-22 19:34:34,036
(net.sf.taverna.raven.repository.impl.LocalRepository:85) - Could not
read com.example:DIANA_Services-activity-ui:1.2-SNAPSHOT from
http://www.mygrid.org.uk/maven/biomoby/biomoby.org/m2repo/
java.io.IOException: Server returned HTTP response code: 409 for URL:
http://repository.mygrid.org.uk/artifactory/biomoby/com/example/DIANA_Services-activity-ui/1.2-SNAPSHOT/DIANA_Services-activity-ui-1.2-SNAPSHOT.pom
"
We assume that this failure is due to the fact that Taverna is not
trying to install/download the DIANA plugin from our server,defined in
the plugin's project pom.xml, but from http://repository.mygrid.org.uk.
Did something change concerning the format of the project pom.xml that
is utilized for the plugin deployment?
Will the error be fixed, if we change the pom.xml? For the the pom.xml
design we followed a similar format as in the following pom file
https://github.com/taverna/taverna-prov/blob/master/pom.xml.
It would be grateful if we could have your feedback on how to
troubleshoot the issue.
Thank you in advance,
DIANA Team
Re: Problem on Taverna Plugin Installation
Posted by Ian Dunlop <ia...@manchester.ac.uk>.
Hello,
What does the plugins.xml say eg
/home/johndoe/.taverna-core-2.5.0/plugins.xml. Maybe taverna can't find
your server for some reason.
Where is your plugin deployed ie the info you put in when adding a new
plugin site? We could then try and install it and see if we get the same
result.
Cheers,
Ian
On 08/02/2016 18:52, PARASKEVOPOULOU MARIA wrote:
> Dear Taverna team,
>
> We have implemented a Taverna plugin incorporating services and
> algorithms implemented in the DIANA LAB (www.microrna.gr).
> The plugin initially worked for Taverna 2.3, while several months ago we
> have updated the plugin and had it functional for both Taverna 2.3 and
> 2.5 versions.
>
> However, the last month DIANA users complain that they cannot add the
> DIANA Taverna plugin in their Taverna workbench.
>
> The installation has been performed several times in the past with success.
> We uninstalled the plugin from our server and also observed a failure in
> the reinstallation.
> We redeployed the plugin but the error remains.
>
> The logs produced in Taverna, report a failure in fetching a Pom file.
>
>
> "WARN 2015-07-22 19:34:34,036
> (net.sf.taverna.raven.repository.impl.LocalRepository:85) - Could not
> read com.example:DIANA_Services-activity-ui:1.2-SNAPSHOT from
> http://www.mygrid.org.uk/maven/biomoby/biomoby.org/m2repo/
> java.io.IOException: Server returned HTTP response code: 409 for URL:
> http://repository.mygrid.org.uk/artifactory/biomoby/com/example/DIANA_Services-activity-ui/1.2-SNAPSHOT/DIANA_Services-activity-ui-1.2-SNAPSHOT.pom
>
> "
> We assume that this failure is due to the fact that Taverna is not
> trying to install/download the DIANA plugin from our server,defined in
> the plugin's project pom.xml, but from http://repository.mygrid.org.uk.
>
> Did something change concerning the format of the project pom.xml that
> is utilized for the plugin deployment?
> Will the error be fixed, if we change the pom.xml? For the the pom.xml
> design we followed a similar format as in the following pom file
> https://github.com/taverna/taverna-prov/blob/master/pom.xml.
>
> It would be grateful if we could have your feedback on how to
> troubleshoot the issue.
>
> Thank you in advance,
>
> DIANA Team
>
--
Ian Dunlop, eScience Lab
School of Computer Science
The University of Manchester
http://orcid.org/0000-0001-7066-3350