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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 12:18:06 UTC
[50/52] [abbrv] incubator-taverna-language git commit: Added
copyright declaration to all files where I could directly identify that the
file was owned by Manchester from the beginning.
Added copyright declaration to all files where I could directly identify
that the file was owned by Manchester from the beginning.
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/commit/7805e775
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/tree/7805e775
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/diff/7805e775
Branch: refs/heads/master
Commit: 7805e775ced9afeb27c4854128efa8ad20ebd51e
Parents: 7e6e391
Author: Donal Fellows <do...@manchester.ac.uk>
Authored: Fri Feb 13 14:25:13 2015 +0000
Committer: Donal Fellows <do...@manchester.ac.uk>
Committed: Fri Feb 13 14:33:34 2015 +0000
----------------------------------------------------------------------
pom.xml | 15 +-------------
.../src/test/resources/helloanyone.t2flow | 18 +++++++++++++++++
.../examples/helloanyone.t2flow | 19 ++++++++++++++++++
.../examples/helloworld.t2flow | 19 ++++++++++++++++++
.../T3-1226-annotations-with-quotes.t2flow | 19 ++++++++++++++++++
.../src/test/resources/annotated2.2.t2flow | 19 ++++++++++++++++++
.../src/test/resources/as.t2flow | 20 ++++++++++++++++++-
.../defaultActivitiesTaverna2.2.t2flow | 19 ++++++++++++++++++
.../src/test/resources/random.t2flow | 19 ++++++++++++++++++
.../semantic_annotations__eclipse.t2flow | 19 ++++++++++++++++++
.../spreadsheet_activity_defaults_892.t2flow | 19 ++++++++++++++++++
.../src/test/resources/xpath_workflow.t2flow | 19 ++++++++++++++++++
.../T3-1226-annotations-with-quotes.t2flow | 19 ++++++++++++++++++
.../src/test/resources/allTypes.t2flow | 21 +++++++++++++++++++-
.../src/test/resources/helloanyone.t2flow | 19 ++++++++++++++++++
.../src/test/resources/helloworld.t2flow | 19 ++++++++++++++++++
16 files changed, 286 insertions(+), 16 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/pom.xml
----------------------------------------------------------------------
diff --git a/pom.xml b/pom.xml
index a11fc92..71b6b4a 100644
--- a/pom.xml
+++ b/pom.xml
@@ -96,13 +96,10 @@
<exclude>/src/test/resources/t172starterpacklist</exclude>
<exclude>/src/test/resources/t230starterpacklist</exclude>
<!-- THESE ARE XML AND SUPPORT COMMENTS -->
- <exclude>/src/test/resources/annotated2.2.t2flow</exclude>
<exclude>/src/test/resources/annotation_with_backslash.t2flow</exclude>
- <exclude>/src/test/resources/as.t2flow</exclude>
<exclude>/src/test/resources/beanshell-deps.t2flow</exclude>
<exclude>/src/test/resources/component_simple.t2flow</exclude>
<exclude>/src/test/resources/dataflow_link_then_merge.t2flow</exclude>
- <exclude>/src/test/resources/defaultActivitiesTaverna2.2.t2flow</exclude>
<exclude>/src/test/resources/dispatchlayers-xsd.t2flow</exclude>
<exclude>/src/test/resources/dispatchlayers.t2flow</exclude>
<exclude>/src/test/resources/fasta_and_pscan.t2flow</exclude>
@@ -110,29 +107,19 @@
<exclude>/src/test/resources/interaction-with-strange-loop.t2flow</exclude>
<exclude>/src/test/resources/interaction_multiple_choice.t2flow</exclude>
<exclude>/src/test/resources/interaction_simple_tell.t2flow</exclude>
- <exclude>/src/test/resources/iterationstrategies.t2flow</exclude>
+ <exclude>/src/test/resources/iterationstrategies.t2flow</exclude><!-- TOM -->
<exclude>/src/test/resources/merge_fun.t2flow</exclude>
<exclude>/src/test/resources/merge_then_dataflow_link.t2flow</exclude>
<exclude>/src/test/resources/missing_merge.t2flow</exclude>
<exclude>/src/test/resources/missing_produced_by_941.t2flow</exclude>
- <exclude>/src/test/resources/random.t2flow</exclude>
<exclude>/src/test/resources/rest-2-2.t2flow</exclude>
<exclude>/src/test/resources/rshell-2-2.t2flow</exclude>
- <exclude>/src/test/resources/semantic_annotations__eclipse.t2flow</exclude>
<exclude>/src/test/resources/simple_fasta.t2flow</exclude>
<exclude>/src/test/resources/sleepers.t2flow</exclude>
- <exclude>/src/test/resources/spreadsheet_activity_defaults_892.t2flow</exclude>
- <exclude>/src/test/resources/T3-1226-annotations-with-quotes.t2flow</exclude>
- <exclude>/src/test/resources/xpath_workflow.t2flow</exclude>
- <exclude>/examples/helloanyone.t2flow</exclude>
- <exclude>/examples/helloworld.t2flow</exclude>
<exclude>/src/test/resources/apiconsumer.t2flow</exclude>
<exclude>/src/test/resources/rest.t2flow</exclude>
- <exclude>/src/test/resources/helloanyone.t2flow</exclude>
<exclude>/src/test/resources/valid_component_imagemagickconvert.t2flow</exclude>
- <exclude>/src/test/resources/allTypes.t2flow</exclude>
<exclude>/src/test/resources/enm-v21.t2flow</exclude>
- <exclude>/src/test/resources/helloworld.t2flow</exclude>
<exclude>/src/test/resources/helloworld.wfdesc.ttl</exclude>
<exclude>/src/test/resources/localdependency.t2flow</exclude>
<exclude>/src/test/resources/nested.t2flow</exclude>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-annotation/src/test/resources/helloanyone.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-annotation/src/test/resources/helloanyone.t2flow b/taverna-scufl2-annotation/src/test/resources/helloanyone.t2flow
index c691d21..9fb9f52 100644
--- a/taverna-scufl2-annotation/src/test/resources/helloanyone.t2flow
+++ b/taverna-scufl2-annotation/src/test/resources/helloanyone.t2flow
@@ -1,4 +1,22 @@
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="01348671-5aaa-4cc2-84cc-477329b70b0d" role="top"><name>Hello_Anyone</name><inputPorts><port><name>name</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<annotationAssertions>
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
<annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.ExampleValue">
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-examples/examples/helloanyone.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-examples/examples/helloanyone.t2flow b/taverna-scufl2-examples/examples/helloanyone.t2flow
index c691d21..3b625f1 100644
--- a/taverna-scufl2-examples/examples/helloanyone.t2flow
+++ b/taverna-scufl2-examples/examples/helloanyone.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="01348671-5aaa-4cc2-84cc-477329b70b0d" role="top"><name>Hello_Anyone</name><inputPorts><port><name>name</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
<annotationAssertions>
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-examples/examples/helloworld.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-examples/examples/helloworld.t2flow b/taverna-scufl2-examples/examples/helloworld.t2flow
index fbc7381..2e10ed9 100644
--- a/taverna-scufl2-examples/examples/helloworld.t2flow
+++ b/taverna-scufl2-examples/examples/helloworld.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="8781d5f4-d0ba-48a8-a1d1-14281bd8a917" role="top"><name>Hello_World</name><inputPorts /><outputPorts><port><name>greeting</name><annotations /></port></outputPorts><processors><processor><name>hello</name><inputPorts /><outputPorts><port><name>value</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>stringconstant-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.stringconstant.StringConstantActivity</class><inputMap /><outputMap><map from="value" to="value" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean xmlns="">
<value>Hello, World!</value>
</net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-t2flow/src/test/resources/T3-1226-annotations-with-quotes.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-t2flow/src/test/resources/T3-1226-annotations-with-quotes.t2flow b/taverna-scufl2-t2flow/src/test/resources/T3-1226-annotations-with-quotes.t2flow
index 26ab94e..3f9aa3e 100644
--- a/taverna-scufl2-t2flow/src/test/resources/T3-1226-annotations-with-quotes.t2flow
+++ b/taverna-scufl2-t2flow/src/test/resources/T3-1226-annotations-with-quotes.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-workbench-core-2.5.0-20140804T1456"><dataflow id="73a04132-5dc0-4e24-8a30-6ef91c773ad1" role="top"><name>T3_1226_test_with__s</name><inputPorts><port><name>a</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
<annotationAssertions>
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-t2flow/src/test/resources/annotated2.2.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-t2flow/src/test/resources/annotated2.2.t2flow b/taverna-scufl2-t2flow/src/test/resources/annotated2.2.t2flow
index 251a1fe..31b1412 100644
--- a/taverna-scufl2-t2flow/src/test/resources/annotated2.2.t2flow
+++ b/taverna-scufl2-t2flow/src/test/resources/annotated2.2.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="9e1f7ffd-3bf9-4ba8-9c63-03b79b1858ad" role="top"><name>Workflow_title</name><inputPorts><port><name>in0</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
<annotationAssertions>
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-t2flow/src/test/resources/as.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-t2flow/src/test/resources/as.t2flow b/taverna-scufl2-t2flow/src/test/resources/as.t2flow
index 2dc0596..c52586a 100644
--- a/taverna-scufl2-t2flow/src/test/resources/as.t2flow
+++ b/taverna-scufl2-t2flow/src/test/resources/as.t2flow
@@ -1,4 +1,22 @@
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.1.0">
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<dataflow id="92c5e8d5-8360-4f86-a845-09c9849cbdc5" role="top">
<name>Workflow1</name>
<inputPorts />
@@ -1654,4 +1672,4 @@ for (int i = 0; i < 40; i++) {
</datalinks>
<annotations />
</dataflow>
-</workflow>
\ No newline at end of file
+</workflow>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-t2flow/src/test/resources/defaultActivitiesTaverna2.2.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-t2flow/src/test/resources/defaultActivitiesTaverna2.2.t2flow b/taverna-scufl2-t2flow/src/test/resources/defaultActivitiesTaverna2.2.t2flow
index 4958771..8d8632a 100644
--- a/taverna-scufl2-t2flow/src/test/resources/defaultActivitiesTaverna2.2.t2flow
+++ b/taverna-scufl2-t2flow/src/test/resources/defaultActivitiesTaverna2.2.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="dc227a10-e8f6-44b0-88c5-c946a15ff669" role="top"><name>Workflow1</name><inputPorts /><outputPorts /><processors><processor><name>Beanshell</name><inputPorts /><outputPorts /><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns="">
<script>the
script;</script>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-t2flow/src/test/resources/random.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-t2flow/src/test/resources/random.t2flow b/taverna-scufl2-t2flow/src/test/resources/random.t2flow
index c3df019..e68bc17 100644
--- a/taverna-scufl2-t2flow/src/test/resources/random.t2flow
+++ b/taverna-scufl2-t2flow/src/test/resources/random.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.1-beta-2"><dataflow id="e87de19a-02c7-4106-ae81-0b8e28efb22c" role="top"><name>Workflow9</name><inputPorts><port><name>InputText</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
<annotationAssertions>
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-t2flow/src/test/resources/semantic_annotations__eclipse.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-t2flow/src/test/resources/semantic_annotations__eclipse.t2flow b/taverna-scufl2-t2flow/src/test/resources/semantic_annotations__eclipse.t2flow
index be15c71..f2d5e9c 100644
--- a/taverna-scufl2-t2flow/src/test/resources/semantic_annotations__eclipse.t2flow
+++ b/taverna-scufl2-t2flow/src/test/resources/semantic_annotations__eclipse.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://taverna.sf.net/2008/xml/t2flow ../../main/resources/uk/org/taverna/scufl2/translator/t2flow/xsd/t2flow-extended.xsd "
xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1"
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-t2flow/src/test/resources/spreadsheet_activity_defaults_892.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-t2flow/src/test/resources/spreadsheet_activity_defaults_892.t2flow b/taverna-scufl2-t2flow/src/test/resources/spreadsheet_activity_defaults_892.t2flow
index 2ab96dd..2a3fb45 100644
--- a/taverna-scufl2-t2flow/src/test/resources/spreadsheet_activity_defaults_892.t2flow
+++ b/taverna-scufl2-t2flow/src/test/resources/spreadsheet_activity_defaults_892.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.1-beta-2"><dataflow id="d6c01ddf-f1a5-4cb7-95b6-a47ce19838a8" role="top"><name>Workflow1</name><inputPorts><port><name>file_url</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port></inputPorts><outputPorts><port><name>A_column</name></port><port><name>B_column</name></port></outputPorts><processors><processor><name>SpreadsheetImport</name><inputPorts><port><name>fileurl</name><depth>0</depth></port></inputPorts><outputPorts><port><name>A</name><depth>1</depth><granularDepth>1</granularDepth></port><port><name>B</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>spreadsheet-import-activity</artifact><version>0.2</version></raven><class>net.sf.taverna.t2.activities.spreadsheet.SpreadsheetImportActivity</class><inputMap><map from="fileurl" to="fileurl" />
</inputMap><outputMap><map from="A" to="A" /><map from="B" to="B" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.spreadsheet.SpreadsheetImportConfiguration xmlns="">
<columnRange>
<start>0</start>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-t2flow/src/test/resources/xpath_workflow.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-t2flow/src/test/resources/xpath_workflow.t2flow b/taverna-scufl2-t2flow/src/test/resources/xpath_workflow.t2flow
index ac1309b..be46489 100644
--- a/taverna-scufl2-t2flow/src/test/resources/xpath_workflow.t2flow
+++ b/taverna-scufl2-t2flow/src/test/resources/xpath_workflow.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.4.0"><dataflow id="1345660e-8b56-407c-9d3f-c2fd3489d26d" role="top"><name>Workflow20</name><inputPorts><port><name>input_file</name><depth>0</depth><granularDepth>0</granularDepth><annotations /></port></inputPorts><outputPorts><port><name>STDERR</name><annotations /></port><port><name>width</name><annotations /></port><port><name>height</name><annotations /></port></outputPorts><processors><processor><name>jpylyzer</name><inputPorts><port><name>input_file</name><depth>0</depth></port></inputPorts><outputPorts><port><name>STDERR</name><depth>0</depth><granularDepth>0</granularDepth></port><port><name>STDOUT</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>external-tool-activity</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.activities.externaltool.External
ToolActivity</class><inputMap><map from="input_file" to="input_file" /></inputMap><outputMap><map from="STDERR" to="STDERR" /><map from="STDOUT" to="STDOUT" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.externaltool.ExternalToolActivityConfigurationBean xmlns="">
<mechanismType>789663B8-DA91-428A-9F7D-B3F3DA185FD4</mechanismType>
<mechanismName>default local</mechanismName>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-wfdesc/src/test/resources/T3-1226-annotations-with-quotes.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-wfdesc/src/test/resources/T3-1226-annotations-with-quotes.t2flow b/taverna-scufl2-wfdesc/src/test/resources/T3-1226-annotations-with-quotes.t2flow
index be49caa..0bf8dd0 100644
--- a/taverna-scufl2-wfdesc/src/test/resources/T3-1226-annotations-with-quotes.t2flow
+++ b/taverna-scufl2-wfdesc/src/test/resources/T3-1226-annotations-with-quotes.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-workbench-core-2.5.0-20140804T1456"><dataflow id="73a04132-5dc0-4e24-8a30-6ef91c773ad1" role="top"><name>T3_1226_test_with__s</name><inputPorts><port><name>a</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
<annotationAssertions>
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-wfdesc/src/test/resources/allTypes.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-wfdesc/src/test/resources/allTypes.t2flow b/taverna-scufl2-wfdesc/src/test/resources/allTypes.t2flow
index 71c46ab..164962a 100644
--- a/taverna-scufl2-wfdesc/src/test/resources/allTypes.t2flow
+++ b/taverna-scufl2-wfdesc/src/test/resources/allTypes.t2flow
@@ -1,4 +1,23 @@
-<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.4.0"><dataflow id="708f0c31-61b0-4528-a096-9a747e6cdf52" role="top"><name>All_types</name><inputPorts /><outputPorts><port><name>out</name><annotations /></port></outputPorts><processors><processor><name>theWsdl</name><inputPorts><port><name>format</name><depth>0</depth></port><port><name>ids</name><depth>0</depth></port></inputPorts><outputPorts><port><name>attachmentList</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>wsdl-activity</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.activities.wsdl.WSDLActivity</class><inputMap><map from="ids" to="ids" /><map from="format" to="format" /></inputMap><outputMap><map from="attachmentList" to="attachmentList" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.wsdl.WSDLActivityConfiguration
Bean xmlns="">
+<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.4.0">
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
+<dataflow id="708f0c31-61b0-4528-a096-9a747e6cdf52" role="top"><name>All_types</name><inputPorts /><outputPorts><port><name>out</name><annotations /></port></outputPorts><processors><processor><name>theWsdl</name><inputPorts><port><name>format</name><depth>0</depth></port><port><name>ids</name><depth>0</depth></port></inputPorts><outputPorts><port><name>attachmentList</name><depth>1</depth><granularDepth>1</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>wsdl-activity</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.activities.wsdl.WSDLActivity</class><inputMap><map from="ids" to="ids" /><map from="format" to="format" /></inputMap><outputMap><map from="attachmentList" to="attachmentList" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean xmlns="">
<wsdl>http://www.ebi.ac.uk/ws/services/urn:Dbfetch?wsdl</wsdl>
<operation>fetchBatch</operation>
</net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-wfdesc/src/test/resources/helloanyone.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-wfdesc/src/test/resources/helloanyone.t2flow b/taverna-scufl2-wfdesc/src/test/resources/helloanyone.t2flow
index c691d21..3b625f1 100644
--- a/taverna-scufl2-wfdesc/src/test/resources/helloanyone.t2flow
+++ b/taverna-scufl2-wfdesc/src/test/resources/helloanyone.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="01348671-5aaa-4cc2-84cc-477329b70b0d" role="top"><name>Hello_Anyone</name><inputPorts><port><name>name</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
<annotationAssertions>
<net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/7805e775/taverna-scufl2-wfdesc/src/test/resources/helloworld.t2flow
----------------------------------------------------------------------
diff --git a/taverna-scufl2-wfdesc/src/test/resources/helloworld.t2flow b/taverna-scufl2-wfdesc/src/test/resources/helloworld.t2flow
index fbc7381..2e10ed9 100644
--- a/taverna-scufl2-wfdesc/src/test/resources/helloworld.t2flow
+++ b/taverna-scufl2-wfdesc/src/test/resources/helloworld.t2flow
@@ -1,3 +1,22 @@
+<?xml version="1.0"?>
+<!--
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ -->
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="8781d5f4-d0ba-48a8-a1d1-14281bd8a917" role="top"><name>Hello_World</name><inputPorts /><outputPorts><port><name>greeting</name><annotations /></port></outputPorts><processors><processor><name>hello</name><inputPorts /><outputPorts><port><name>value</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>stringconstant-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.stringconstant.StringConstantActivity</class><inputMap /><outputMap><map from="value" to="value" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean xmlns="">
<value>Hello, World!</value>
</net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">