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Posted to user@ant.apache.org by David Wood <d....@imb.uq.edu.au> on 2007/05/16 03:26:00 UTC
java exception when task executed with ant but not manually
Hello users,
I am getting different results when executing a java program with ant than
when I execute it manually.
When ant is used the program throws a null pointer exception eg:
[d.wood@home]$ ant testApp
Buildfile: build.xml
init:
compile:
testApp:
[java] getting frontpage
[java] Got 30 frontpage entries
[java] java.lang.NullPointerException
[java] at GetReactomeData.main(Unknown Source)
[java] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
[java] at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39
)
[java] at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl
.java:25)
[java] at java.lang.reflect.Method.invoke(Method.java:585)
[java] at
org.apache.tools.ant.taskdefs.ExecuteJava.run(ExecuteJava.java:202)
[java] at
org.apache.tools.ant.taskdefs.ExecuteJava.execute(ExecuteJava.java:134)
[java] at org.apache.tools.ant.taskdefs.Java.run(Java.java:710)
[java] at
org.apache.tools.ant.taskdefs.Java.executeJava(Java.java:178)
[java] at org.apache.tools.ant.taskdefs.Java.execute(Java.java:84)
[java] at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
[java] at org.apache.tools.ant.Task.perform(Task.java:364)
[java] at org.apache.tools.ant.Target.execute(Target.java:341)
But when I launch the application manually it does not crash and completes
fine.
[d.wood@qfab-srs build]$ java RunApp
getting frontpage
Got 30 frontpage entries
109581 (Pathway) Apoptosis (parent = null)
69620 (Pathway) Cell Cycle Checkpoints (parent = null)
69278 (Pathway) Cell Cycle, Mitotic (parent = null)
73894 (Pathway) DNA Repair (parent = null)
69306 (Pathway) DNA Replication (parent = null)
163200 (Pathway) Electron Transport Chain (parent = null)
.etc
In both cases the CLASSPATH is set the same (I have compared these by
outputting it within the script before it crashes). The application is
attempting to access data stored within deserialised java beans from a web
services server, might this be breaking the ant VM?
My testApp task is:
<!-- testApp -->
<target name="testApp" depends="compile"
description="run a direct test of the java app">
<java classname="RunApp">
<classpath>
<pathelement path="${env.CLASSPATH}:${build}"/>
<fileset dir="${build}">
<include name="RunApp"/>
</fileset>
</classpath>
</java>
</target>
Thanks for any help!
Cheers,
Dave
RE: java exception when task executed with ant but not manually
Posted by David Wood <d....@imb.uq.edu.au>.
thanks Prashant,
indeed!
They are executing different java binaries:
Ant:
[java] Executing '/usr/java/jdk1.5.0_11/jre/bin/java' with arguments:
Manual:
[d.wood@home apache-ant-1.6.5]$ which java
/usr/java/jdk1.5.0_11/bin/java
So I guess I need to set ANT to use /usr/java/jdk1.5.0_11/bin/java (even
though this does not explain why /jre/bin/java is crashing!). How do I tell
ant which one to use? I would have thought it would use the one in my
path...
Dave
-----Original Message-----
From: Prashant Reddy [mailto:prashant@pramati.com]
Sent: Wednesday, 16 May 2007 2:30 PM
To: Ant Users List
Subject: RE: java exception when task executed with ant but not manually
Hi david,
You could try running the target 'testApp' in verbose mode.
This will print the java command used to launch the tests. You can then
compare this with the setup which is working fine to figure out which
configuration is missing.
Hope this helps.
-Prashant
On Wed, 2007-05-16 at 12:34 +1000, David Wood wrote:
> Hi Martin,
>
> I've actually made a few changes to the code and was getting new
exceptions.
> I was testing these changes with ant, and believe I have fixed them in the
> code as the app works fine when executed from the command line but ant is
> still producing run time errors.
>
> Even though, I added in your changes and it does not seem to have made a
> difference, the exceptions are still the same.
>
> testApp:
> [java] getting frontpage
> [java] 1 [main] ERROR client.Call - Exception:
> [java] org.xml.sax.SAXException: Invalid element in
> qfab.imb.uq.edu.au.reactome.ReactomeComponent - ID
> [java] at
>
org.apache.axis.encoding.ser.BeanDeserializer.onStartChild(BeanDeserializer.
> java:258)
> [java] at
>
org.apache.axis.encoding.DeserializationContext.startElement(Deserialization
> Context.java:1035)
>
>
> I think that there is something wrong with how the ant VM is handling the
> registering of the bean serialization and deserialization. When I make
> changes to the Bean file, reload the web service, the exceptions from ant
> remain the same.
>
> Dave
>
> -----Original Message-----
> From: Martin Gainty [mailto:mgainty@hotmail.com]
> Sent: Wednesday, 16 May 2007 12:00 PM
> To: Ant Users List
> Subject: Re: java exception when task executed with ant but not manually
>
> Dave..what happens when you specify the dir, fork, failonerror and boost
the
>
> memory used to 128MB?
> <java classname="RunApp"
> dir="C:/"
> fork="true"
> failonerror="true"
> maxmemory="128m"
> >
> <classpath>
> <pathelement path="${env.CLASSPATH}:${build}"/>
> <fileset dir="${build}">
> <include name="RunApp"/>
> </fileset>
> </classpath>
> </java>
>
> M--
> This email message and any files transmitted with it contain confidential
> information intended only for the person(s) to whom this email message is
> addressed. If you have received this email message in error, please
notify
> the sender immediately by telephone or email and destroy the original
> message without making a copy. Thank you.
>
> ----- Original Message -----
> From: "David Wood" <d....@imb.uq.edu.au>
> To: <us...@ant.apache.org>
> Sent: Tuesday, May 15, 2007 9:26 PM
> Subject: java exception when task executed with ant but not manually
>
>
> > Hello users,
> >
> > I am getting different results when executing a java program with ant
than
> > when I execute it manually.
> >
> > When ant is used the program throws a null pointer exception eg:
> >
> > [d.wood@home]$ ant testApp
> > Buildfile: build.xml
> >
> > init:
> >
> > compile:
> >
> > testApp:
> > [java] getting frontpage
> > [java] Got 30 frontpage entries
> > [java] java.lang.NullPointerException
> > [java] at GetReactomeData.main(Unknown Source)
> > [java] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
> > Method)
> > [java] at
> >
>
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39
> > )
> > [java] at
> >
>
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl
> > .java:25)
> > [java] at java.lang.reflect.Method.invoke(Method.java:585)
> > [java] at
> > org.apache.tools.ant.taskdefs.ExecuteJava.run(ExecuteJava.java:202)
> > [java] at
> > org.apache.tools.ant.taskdefs.ExecuteJava.execute(ExecuteJava.java:134)
> > [java] at org.apache.tools.ant.taskdefs.Java.run(Java.java:710)
> > [java] at
> > org.apache.tools.ant.taskdefs.Java.executeJava(Java.java:178)
> > [java] at
org.apache.tools.ant.taskdefs.Java.execute(Java.java:84)
> > [java] at
> > org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
> > [java] at org.apache.tools.ant.Task.perform(Task.java:364)
> > [java] at org.apache.tools.ant.Target.execute(Target.java:341)
> >
> > But when I launch the application manually it does not crash and
completes
> > fine.
> > [d.wood@qfab-srs build]$ java RunApp
> > getting frontpage
> > Got 30 frontpage entries
> > 109581 (Pathway) Apoptosis (parent = null)
> > 69620 (Pathway) Cell Cycle Checkpoints (parent = null)
> > 69278 (Pathway) Cell Cycle, Mitotic (parent = null)
> > 73894 (Pathway) DNA Repair (parent = null)
> > 69306 (Pathway) DNA Replication (parent = null)
> > 163200 (Pathway) Electron Transport Chain (parent = null)
> > .etc
> >
> >
> > In both cases the CLASSPATH is set the same (I have compared these by
> > outputting it within the script before it crashes). The application is
> > attempting to access data stored within deserialised java beans from a
web
> > services server, might this be breaking the ant VM?
> >
> > My testApp task is:
> > <!-- testApp -->
> > <target name="testApp" depends="compile"
> > description="run a direct test of the java app">
> > <java classname="RunApp">
> > <classpath>
> > <pathelement path="${env.CLASSPATH}:${build}"/>
> > <fileset dir="${build}">
> > <include name="RunApp"/>
> > </fileset>
> > </classpath>
> > </java>
> > </target>
> >
> >
> > Thanks for any help!
> >
> > Cheers,
> > Dave
> >
> >
> >
>
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: user-unsubscribe@ant.apache.org
> For additional commands, e-mail: user-help@ant.apache.org
>
>
>
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: user-unsubscribe@ant.apache.org
> For additional commands, e-mail: user-help@ant.apache.org
--
-Prashant
Don't upload, just share : www.dekoh.com
---------------------------------------------------------------------
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RE: java exception when task executed with ant but not manually
Posted by Prashant Reddy <pr...@pramati.com>.
Hi david,
You could try running the target 'testApp' in verbose mode.
This will print the java command used to launch the tests. You can then
compare this with the setup which is working fine to figure out which
configuration is missing.
Hope this helps.
-Prashant
On Wed, 2007-05-16 at 12:34 +1000, David Wood wrote:
> Hi Martin,
>
> I've actually made a few changes to the code and was getting new exceptions.
> I was testing these changes with ant, and believe I have fixed them in the
> code as the app works fine when executed from the command line but ant is
> still producing run time errors.
>
> Even though, I added in your changes and it does not seem to have made a
> difference, the exceptions are still the same.
>
> testApp:
> [java] getting frontpage
> [java] 1 [main] ERROR client.Call - Exception:
> [java] org.xml.sax.SAXException: Invalid element in
> qfab.imb.uq.edu.au.reactome.ReactomeComponent - ID
> [java] at
> org.apache.axis.encoding.ser.BeanDeserializer.onStartChild(BeanDeserializer.
> java:258)
> [java] at
> org.apache.axis.encoding.DeserializationContext.startElement(Deserialization
> Context.java:1035)
>
>
> I think that there is something wrong with how the ant VM is handling the
> registering of the bean serialization and deserialization. When I make
> changes to the Bean file, reload the web service, the exceptions from ant
> remain the same.
>
> Dave
>
> -----Original Message-----
> From: Martin Gainty [mailto:mgainty@hotmail.com]
> Sent: Wednesday, 16 May 2007 12:00 PM
> To: Ant Users List
> Subject: Re: java exception when task executed with ant but not manually
>
> Dave..what happens when you specify the dir, fork, failonerror and boost the
>
> memory used to 128MB?
> <java classname="RunApp"
> dir="C:/"
> fork="true"
> failonerror="true"
> maxmemory="128m"
> >
> <classpath>
> <pathelement path="${env.CLASSPATH}:${build}"/>
> <fileset dir="${build}">
> <include name="RunApp"/>
> </fileset>
> </classpath>
> </java>
>
> M--
> This email message and any files transmitted with it contain confidential
> information intended only for the person(s) to whom this email message is
> addressed. If you have received this email message in error, please notify
> the sender immediately by telephone or email and destroy the original
> message without making a copy. Thank you.
>
> ----- Original Message -----
> From: "David Wood" <d....@imb.uq.edu.au>
> To: <us...@ant.apache.org>
> Sent: Tuesday, May 15, 2007 9:26 PM
> Subject: java exception when task executed with ant but not manually
>
>
> > Hello users,
> >
> > I am getting different results when executing a java program with ant than
> > when I execute it manually.
> >
> > When ant is used the program throws a null pointer exception eg:
> >
> > [d.wood@home]$ ant testApp
> > Buildfile: build.xml
> >
> > init:
> >
> > compile:
> >
> > testApp:
> > [java] getting frontpage
> > [java] Got 30 frontpage entries
> > [java] java.lang.NullPointerException
> > [java] at GetReactomeData.main(Unknown Source)
> > [java] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
> > Method)
> > [java] at
> >
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39
> > )
> > [java] at
> >
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl
> > .java:25)
> > [java] at java.lang.reflect.Method.invoke(Method.java:585)
> > [java] at
> > org.apache.tools.ant.taskdefs.ExecuteJava.run(ExecuteJava.java:202)
> > [java] at
> > org.apache.tools.ant.taskdefs.ExecuteJava.execute(ExecuteJava.java:134)
> > [java] at org.apache.tools.ant.taskdefs.Java.run(Java.java:710)
> > [java] at
> > org.apache.tools.ant.taskdefs.Java.executeJava(Java.java:178)
> > [java] at org.apache.tools.ant.taskdefs.Java.execute(Java.java:84)
> > [java] at
> > org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
> > [java] at org.apache.tools.ant.Task.perform(Task.java:364)
> > [java] at org.apache.tools.ant.Target.execute(Target.java:341)
> >
> > But when I launch the application manually it does not crash and completes
> > fine.
> > [d.wood@qfab-srs build]$ java RunApp
> > getting frontpage
> > Got 30 frontpage entries
> > 109581 (Pathway) Apoptosis (parent = null)
> > 69620 (Pathway) Cell Cycle Checkpoints (parent = null)
> > 69278 (Pathway) Cell Cycle, Mitotic (parent = null)
> > 73894 (Pathway) DNA Repair (parent = null)
> > 69306 (Pathway) DNA Replication (parent = null)
> > 163200 (Pathway) Electron Transport Chain (parent = null)
> > .etc
> >
> >
> > In both cases the CLASSPATH is set the same (I have compared these by
> > outputting it within the script before it crashes). The application is
> > attempting to access data stored within deserialised java beans from a web
> > services server, might this be breaking the ant VM?
> >
> > My testApp task is:
> > <!-- testApp -->
> > <target name="testApp" depends="compile"
> > description="run a direct test of the java app">
> > <java classname="RunApp">
> > <classpath>
> > <pathelement path="${env.CLASSPATH}:${build}"/>
> > <fileset dir="${build}">
> > <include name="RunApp"/>
> > </fileset>
> > </classpath>
> > </java>
> > </target>
> >
> >
> > Thanks for any help!
> >
> > Cheers,
> > Dave
> >
> >
> >
>
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: user-unsubscribe@ant.apache.org
> For additional commands, e-mail: user-help@ant.apache.org
>
>
>
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: user-unsubscribe@ant.apache.org
> For additional commands, e-mail: user-help@ant.apache.org
--
-Prashant
Don't upload, just share : www.dekoh.com
---------------------------------------------------------------------
To unsubscribe, e-mail: user-unsubscribe@ant.apache.org
For additional commands, e-mail: user-help@ant.apache.org
RE: java exception when task executed with ant but not manually
Posted by David Wood <d....@imb.uq.edu.au>.
Hi Martin,
I've actually made a few changes to the code and was getting new exceptions.
I was testing these changes with ant, and believe I have fixed them in the
code as the app works fine when executed from the command line but ant is
still producing run time errors.
Even though, I added in your changes and it does not seem to have made a
difference, the exceptions are still the same.
testApp:
[java] getting frontpage
[java] 1 [main] ERROR client.Call - Exception:
[java] org.xml.sax.SAXException: Invalid element in
qfab.imb.uq.edu.au.reactome.ReactomeComponent - ID
[java] at
org.apache.axis.encoding.ser.BeanDeserializer.onStartChild(BeanDeserializer.
java:258)
[java] at
org.apache.axis.encoding.DeserializationContext.startElement(Deserialization
Context.java:1035)
I think that there is something wrong with how the ant VM is handling the
registering of the bean serialization and deserialization. When I make
changes to the Bean file, reload the web service, the exceptions from ant
remain the same.
Dave
-----Original Message-----
From: Martin Gainty [mailto:mgainty@hotmail.com]
Sent: Wednesday, 16 May 2007 12:00 PM
To: Ant Users List
Subject: Re: java exception when task executed with ant but not manually
Dave..what happens when you specify the dir, fork, failonerror and boost the
memory used to 128MB?
<java classname="RunApp"
dir="C:/"
fork="true"
failonerror="true"
maxmemory="128m"
>
<classpath>
<pathelement path="${env.CLASSPATH}:${build}"/>
<fileset dir="${build}">
<include name="RunApp"/>
</fileset>
</classpath>
</java>
M--
This email message and any files transmitted with it contain confidential
information intended only for the person(s) to whom this email message is
addressed. If you have received this email message in error, please notify
the sender immediately by telephone or email and destroy the original
message without making a copy. Thank you.
----- Original Message -----
From: "David Wood" <d....@imb.uq.edu.au>
To: <us...@ant.apache.org>
Sent: Tuesday, May 15, 2007 9:26 PM
Subject: java exception when task executed with ant but not manually
> Hello users,
>
> I am getting different results when executing a java program with ant than
> when I execute it manually.
>
> When ant is used the program throws a null pointer exception eg:
>
> [d.wood@home]$ ant testApp
> Buildfile: build.xml
>
> init:
>
> compile:
>
> testApp:
> [java] getting frontpage
> [java] Got 30 frontpage entries
> [java] java.lang.NullPointerException
> [java] at GetReactomeData.main(Unknown Source)
> [java] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
> Method)
> [java] at
>
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39
> )
> [java] at
>
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl
> .java:25)
> [java] at java.lang.reflect.Method.invoke(Method.java:585)
> [java] at
> org.apache.tools.ant.taskdefs.ExecuteJava.run(ExecuteJava.java:202)
> [java] at
> org.apache.tools.ant.taskdefs.ExecuteJava.execute(ExecuteJava.java:134)
> [java] at org.apache.tools.ant.taskdefs.Java.run(Java.java:710)
> [java] at
> org.apache.tools.ant.taskdefs.Java.executeJava(Java.java:178)
> [java] at org.apache.tools.ant.taskdefs.Java.execute(Java.java:84)
> [java] at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
> [java] at org.apache.tools.ant.Task.perform(Task.java:364)
> [java] at org.apache.tools.ant.Target.execute(Target.java:341)
>
> But when I launch the application manually it does not crash and completes
> fine.
> [d.wood@qfab-srs build]$ java RunApp
> getting frontpage
> Got 30 frontpage entries
> 109581 (Pathway) Apoptosis (parent = null)
> 69620 (Pathway) Cell Cycle Checkpoints (parent = null)
> 69278 (Pathway) Cell Cycle, Mitotic (parent = null)
> 73894 (Pathway) DNA Repair (parent = null)
> 69306 (Pathway) DNA Replication (parent = null)
> 163200 (Pathway) Electron Transport Chain (parent = null)
> .etc
>
>
> In both cases the CLASSPATH is set the same (I have compared these by
> outputting it within the script before it crashes). The application is
> attempting to access data stored within deserialised java beans from a web
> services server, might this be breaking the ant VM?
>
> My testApp task is:
> <!-- testApp -->
> <target name="testApp" depends="compile"
> description="run a direct test of the java app">
> <java classname="RunApp">
> <classpath>
> <pathelement path="${env.CLASSPATH}:${build}"/>
> <fileset dir="${build}">
> <include name="RunApp"/>
> </fileset>
> </classpath>
> </java>
> </target>
>
>
> Thanks for any help!
>
> Cheers,
> Dave
>
>
>
---------------------------------------------------------------------
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---------------------------------------------------------------------
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Re: java exception when task executed with ant but not manually
Posted by Martin Gainty <mg...@hotmail.com>.
Dave..what happens when you specify the dir, fork, failonerror and boost the
memory used to 128MB?
<java classname="RunApp"
dir="C:/"
fork="true"
failonerror="true"
maxmemory="128m"
>
<classpath>
<pathelement path="${env.CLASSPATH}:${build}"/>
<fileset dir="${build}">
<include name="RunApp"/>
</fileset>
</classpath>
</java>
M--
This email message and any files transmitted with it contain confidential
information intended only for the person(s) to whom this email message is
addressed. If you have received this email message in error, please notify
the sender immediately by telephone or email and destroy the original
message without making a copy. Thank you.
----- Original Message -----
From: "David Wood" <d....@imb.uq.edu.au>
To: <us...@ant.apache.org>
Sent: Tuesday, May 15, 2007 9:26 PM
Subject: java exception when task executed with ant but not manually
> Hello users,
>
> I am getting different results when executing a java program with ant than
> when I execute it manually.
>
> When ant is used the program throws a null pointer exception eg:
>
> [d.wood@home]$ ant testApp
> Buildfile: build.xml
>
> init:
>
> compile:
>
> testApp:
> [java] getting frontpage
> [java] Got 30 frontpage entries
> [java] java.lang.NullPointerException
> [java] at GetReactomeData.main(Unknown Source)
> [java] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
> Method)
> [java] at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39
> )
> [java] at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl
> .java:25)
> [java] at java.lang.reflect.Method.invoke(Method.java:585)
> [java] at
> org.apache.tools.ant.taskdefs.ExecuteJava.run(ExecuteJava.java:202)
> [java] at
> org.apache.tools.ant.taskdefs.ExecuteJava.execute(ExecuteJava.java:134)
> [java] at org.apache.tools.ant.taskdefs.Java.run(Java.java:710)
> [java] at
> org.apache.tools.ant.taskdefs.Java.executeJava(Java.java:178)
> [java] at org.apache.tools.ant.taskdefs.Java.execute(Java.java:84)
> [java] at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
> [java] at org.apache.tools.ant.Task.perform(Task.java:364)
> [java] at org.apache.tools.ant.Target.execute(Target.java:341)
>
> But when I launch the application manually it does not crash and completes
> fine.
> [d.wood@qfab-srs build]$ java RunApp
> getting frontpage
> Got 30 frontpage entries
> 109581 (Pathway) Apoptosis (parent = null)
> 69620 (Pathway) Cell Cycle Checkpoints (parent = null)
> 69278 (Pathway) Cell Cycle, Mitotic (parent = null)
> 73894 (Pathway) DNA Repair (parent = null)
> 69306 (Pathway) DNA Replication (parent = null)
> 163200 (Pathway) Electron Transport Chain (parent = null)
> .etc
>
>
> In both cases the CLASSPATH is set the same (I have compared these by
> outputting it within the script before it crashes). The application is
> attempting to access data stored within deserialised java beans from a web
> services server, might this be breaking the ant VM?
>
> My testApp task is:
> <!-- testApp -->
> <target name="testApp" depends="compile"
> description="run a direct test of the java app">
> <java classname="RunApp">
> <classpath>
> <pathelement path="${env.CLASSPATH}:${build}"/>
> <fileset dir="${build}">
> <include name="RunApp"/>
> </fileset>
> </classpath>
> </java>
> </target>
>
>
> Thanks for any help!
>
> Cheers,
> Dave
>
>
>
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