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Posted to commits@uima.apache.org by sc...@apache.org on 2014/01/06 21:15:48 UTC

svn commit: r1556016 [2/3] - in /uima/uimaj/trunk/uimaj-core/src: main/java/org/apache/uima/ main/java/org/apache/uima/analysis_engine/ main/java/org/apache/uima/analysis_engine/asb/ main/java/org/apache/uima/analysis_engine/asb/impl/ main/java/org/apa...

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/examples/SourceDocumentInformation.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/examples/SourceDocumentInformation.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/examples/SourceDocumentInformation.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/examples/SourceDocumentInformation.java Mon Jan  6 20:15:45 2014
@@ -60,7 +60,7 @@ public class SourceDocumentInformation e
   protected SourceDocumentInformation() {
   }
 
-  /*
+  /**
    * Internal - constructor used by generator
    * 
    * @generated
@@ -95,7 +95,7 @@ public class SourceDocumentInformation e
   // *--------------*
   // * Feature: uri
 
-  /*
+  /**
    * getter for uri - gets URI of document. (For example, file:///MyDirectory/myFile.txt for a
    * simple file or http://incubator.apache.org/uima/index.html for content from a web source.)
    * 
@@ -109,7 +109,7 @@ public class SourceDocumentInformation e
             ((SourceDocumentInformation_Type) jcasType).casFeatCode_uri);
   }
 
-  /*
+  /**
    * setter for uri - sets URI of document. (For example, file:///MyDirectory/myFile.txt for a
    * simple file or http://incubator.apache.org/uima/index.html for content from a web source.)
    * 
@@ -126,7 +126,7 @@ public class SourceDocumentInformation e
   // *--------------*
   // * Feature: offsetInSource
 
-  /*
+  /**
    * getter for offsetInSource - gets Byte offset of the start of document content within original
    * source file or other input source. Only used if the CAS document was retrieved from an source
    * where one physical source file contained several conceptual documents. Zero otherwise.
@@ -141,7 +141,7 @@ public class SourceDocumentInformation e
             ((SourceDocumentInformation_Type) jcasType).casFeatCode_offsetInSource);
   }
 
-  /*
+  /**
    * setter for offsetInSource - sets Byte offset of the start of document content within original
    * source file or other input source. Only used if the CAS document was retrieved from an source
    * where one physical source file contained several conceptual documents. Zero otherwise.
@@ -159,7 +159,7 @@ public class SourceDocumentInformation e
   // *--------------*
   // * Feature: documentSize
 
-  /*
+  /**
    * getter for documentSize - gets Size of original document in bytes before processing by CAS
    * Initializer. Either absolute file size of size within file or other source.
    * 
@@ -173,7 +173,7 @@ public class SourceDocumentInformation e
             ((SourceDocumentInformation_Type) jcasType).casFeatCode_documentSize);
   }
 
-  /*
+  /**
    * setter for documentSize - sets Size of original document in bytes before processing by CAS
    * Initializer. Either absolute file size of size within file or other source.
    * 
@@ -190,7 +190,7 @@ public class SourceDocumentInformation e
   // *--------------*
   // * Feature: lastSegment
 
-  /*
+  /**
    * getter for lastSegment - gets For a CAS that represents a segment of a larger source document,
    * this flag indicates whether this CAS is the final segment of the source document. This is
    * useful for downstream components that want to take some action after having seen all of the
@@ -206,7 +206,7 @@ public class SourceDocumentInformation e
             ((SourceDocumentInformation_Type) jcasType).casFeatCode_lastSegment);
   }
 
-  /*
+  /**
    * setter for lastSegment - sets For a CAS that represents a segment of a larger source document,
    * this flag indicates whether this CAS is the final segment of the source document. This is
    * useful for downstream components that want to take some action after having seen all of the

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/CasFlowController_ImplBase.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/CasFlowController_ImplBase.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/CasFlowController_ImplBase.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/CasFlowController_ImplBase.java Mon Jan  6 20:15:45 2014
@@ -91,7 +91,7 @@ public abstract class CasFlowController_
    * @param aTypeSystem
    *          the typesystem
    * 
-   * @throws CasProcessorComponentException
+   * @throws AnalysisEngineProcessException
    *           if a problem occurs during processing
    */
   public void typeSystemInit(TypeSystem aTypeSystem) throws AnalysisEngineProcessException {

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/CasFlow_ImplBase.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/CasFlow_ImplBase.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/CasFlow_ImplBase.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/CasFlow_ImplBase.java Mon Jan  6 20:15:45 2014
@@ -93,10 +93,10 @@ public abstract class CasFlow_ImplBase i
    *          the key of the CAS Multiplier that produced this CAS
    * 
    * @return a Flow object that will be used to route the new CAS
+   * @throws AnalysisEngineProcessException passthru
    * @see Flow#newCasProduced(AbstractCas, String)
    */
-  protected Flow newCasProduced(CAS newCas, String producedBy)
-          throws AnalysisEngineProcessException {
+  protected Flow newCasProduced(CAS newCas, String producedBy) throws AnalysisEngineProcessException {
     throw new UIMA_UnsupportedOperationException(
             UIMA_UnsupportedOperationException.CAS_MULTIPLIER_NOT_SUPPORTED, new Object[] { this
                     .getClass().getName() });

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/Flow.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/Flow.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/Flow.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/Flow.java Mon Jan  6 20:15:45 2014
@@ -58,7 +58,7 @@ public interface Flow {
    * @return a new Flow object that has responsibility for routing <code>aCAS</code> through the
    *         Aggregate Analysis Engine.
    * 
-   * @throws AnalysisEngineProcessException
+   * @throws AnalysisEngineProcessException passthru
    */
   Flow newCasProduced(AbstractCas newCas, String producedBy) throws AnalysisEngineProcessException;
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/FlowController.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/FlowController.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/FlowController.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/FlowController.java Mon Jan  6 20:15:45 2014
@@ -85,7 +85,7 @@ public interface FlowController {
    * calling <code>destroy</code> followed by <code>initialize</code>. If a more efficient
    * implementation is needed, you can override that implementation.
    * 
-   * @throws ResourceConfiguartionException
+   * @throws ResourceConfigurationException
    *           if the new configuration is invalid
    * @throws ResourceInitializationException
    *           if this component encounters a problem in reinitializing itself from the new
@@ -142,7 +142,7 @@ public interface FlowController {
    * @return a Flow object that has responsibility for routing <code>aCAS</code> through the
    *         Aggregate Analysis Engine.
    * 
-   * @throws AnalysisEngineComponentException
+   * @throws AnalysisEngineProcessException
    *           if this FlowController encounters a problem computing the flow for the CAS
    */
   Flow computeFlow(AbstractCas aCAS) throws AnalysisEngineProcessException;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/JCasFlow_ImplBase.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/JCasFlow_ImplBase.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/JCasFlow_ImplBase.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/JCasFlow_ImplBase.java Mon Jan  6 20:15:45 2014
@@ -91,7 +91,9 @@ public abstract class JCasFlow_ImplBase 
    *          the key of the CAS Multiplier that produced this JCas
    * 
    * @return a Flow object that will be used to route the new JCas
+   * @throws AnalysisEngineProcessException -
    * @see Flow#newCasProduced(AbstractCas, String)
+   * 
    */
   protected Flow newCasProduced(JCas newCas, String producedBy)
           throws AnalysisEngineProcessException {

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/SimpleStepWithResultSpec.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/SimpleStepWithResultSpec.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/SimpleStepWithResultSpec.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/flow/SimpleStepWithResultSpec.java Mon Jan  6 20:15:45 2014
@@ -33,8 +33,8 @@ import org.apache.uima.analysis_engine.R
 public class SimpleStepWithResultSpec extends SimpleStep {
 
   /**
-   * @param aCasProcessorKey
-   * @param aResultSpec
+   * @param aCasProcessorKey key
+   * @param aResultSpec Result Specification
    */
   public SimpleStepWithResultSpec(String aCasProcessorKey, ResultSpecification aResultSpec) {
     super(aCasProcessorKey);

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/impl/UimaContext_ImplBase.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/impl/UimaContext_ImplBase.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/impl/UimaContext_ImplBase.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/impl/UimaContext_ImplBase.java Mon Jan  6 20:15:45 2014
@@ -58,9 +58,7 @@ import org.apache.uima.util.Level;
 import org.apache.uima.util.Settings;
 import org.apache.uima.util.UriUtils;
 
-/**
- * 
- */
+
 public abstract class UimaContext_ImplBase implements UimaContextAdmin {
   /**
    * resource bundle for log messages

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/CharArraySpanMap.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/CharArraySpanMap.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/CharArraySpanMap.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/CharArraySpanMap.java Mon Jan  6 20:15:45 2014
@@ -191,9 +191,9 @@ public class CharArraySpanMap {
    *          Length of sub-range.
    * @return <code>true</code> iff the map contains the key.
    * @pre characterArray != null
-   * @pre start >= 0
-   * @pre length >= 0
-   * @pre length <= (characterArray.length - start)
+   * @pre start &ge; 0
+   * @pre length &ge; 0
+   * @pre length &le; (characterArray.length - start)
    */
   public final boolean containsKey(char[] characterArray, int start, int length) {
     final int hashCode = CharArrayString.hashCode(characterArray, start, (start + length));

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/CharArrayString.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/CharArrayString.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/CharArrayString.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/CharArrayString.java Mon Jan  6 20:15:45 2014
@@ -79,10 +79,10 @@ public class CharArrayString {
    * @param length
    *          The length of the string.
    * @pre charArray != null
-   * @pre startPos >= 0
-   * @pre startPos <= charArray.length
-   * @pre length >= 0
-   * @pre length <= charArray.length - startPos
+   * @pre startPos &ge; 0
+   * @pre startPos &le; charArray.length
+   * @pre length &ge; 0
+   * @pre length &le; charArray.length - startPos
    */
   public CharArrayString(char[] charArray, int startPos, int length) {
     super();
@@ -349,9 +349,9 @@ public class CharArrayString {
    * @param endPos
    * @return The hash code.
    * @pre charArray != null
-   * @pre startPos >= 0
-   * @pre endPos >= startPos
-   * @pre charArray.length >= endPos
+   * @pre startPos &ge; 0
+   * @pre endPos &ge; startPos
+   * @pre charArray.length &ge; endPos
    */
   public static final int hashCode(char[] charArray, int startPos, int endPos) {
     // Universal hashing (pseudo-random), out of Sedgewick.

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/JavaTimer.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/JavaTimer.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/JavaTimer.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/JavaTimer.java Mon Jan  6 20:15:45 2014
@@ -27,9 +27,7 @@ import org.apache.uima.util.UimaTimer;
  * 
  */
 public class JavaTimer implements UimaTimer {
-  /**
-   * 
-   */
+  
   private static final long serialVersionUID = 4644107369628471363L;
 
   private long start = 0;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/MutableInteger.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/MutableInteger.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/MutableInteger.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/MutableInteger.java Mon Jan  6 20:15:45 2014
@@ -19,9 +19,7 @@
 
 package org.apache.uima.internal.util;
 
-/**
- * 
- */
+
 public class MutableInteger {
   public int intValue;
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/Int2IntRBT.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/Int2IntRBT.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/Int2IntRBT.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/Int2IntRBT.java Mon Jan  6 20:15:45 2014
@@ -397,9 +397,7 @@ public class Int2IntRBT extends IntArray
   }
   
  
-  /**
-   * 
-   */
+  
   
   private int findKeyFromLast(final int k) {
     int node = lastNodeGotten;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntArrayRBT.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntArrayRBT.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntArrayRBT.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntArrayRBT.java Mon Jan  6 20:15:45 2014
@@ -470,7 +470,9 @@ public class IntArrayRBT extends IntArra
   }
 
   /**
-   * Find the node such that key[node] >= k and key[previous(node)] < k.
+   * Find the node such that key[node] &ge; k and key[previous(node)] &lt; k.
+   * @param k the key
+   * @return the index of the node
    */
   public int findInsertionPoint(final int k) {
     int node = this.root;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntArrayRBTcommon.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntArrayRBTcommon.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntArrayRBTcommon.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntArrayRBTcommon.java Mon Jan  6 20:15:45 2014
@@ -473,7 +473,7 @@ public class IntArrayRBTcommon {
   }
 
   /**
-   * Find the node such that key[node] >= k and key[previous(node)] < k.
+   * Find the node such that key[node] &ge; k and key[previous(node)] &lt; k.
    */
   public int findInsertionPointNoDups(final int k) {
     int node = this.root;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntRedBlackTree.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntRedBlackTree.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntRedBlackTree.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/internal/util/rb_trees/IntRedBlackTree.java Mon Jan  6 20:15:45 2014
@@ -200,7 +200,7 @@ public class IntRedBlackTree {
    * {@link org.apache.uima.internal.util.rb_trees.IntRBTArray IntRBTArray} object.
    * 
    * @param offset
-   *          An offset for internal addressing. If <code>offset > 0</code>, the addresses
+   *          An offset for internal addressing. If <code>offset &gt; 0</code>, the addresses
    *          generated for right daughters in two-daughter nodes are shifted to the right. This is
    *          useful if the resulting array will be copied to a certain <code>offset</code>
    *          position in a different array.

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/JCas.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/JCas.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/JCas.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/JCas.java Mon Jan  6 20:15:45 2014
@@ -79,18 +79,22 @@ public interface JCas extends AbstractCa
   // *********************************
   // * Getters for read-only objects *
   // *********************************
-  /** return the FSIndexRepository object for this Cas. */
+  /**
+   * @return the FSIndexRepository object for this Cas
+   */
   public abstract FSIndexRepository getFSIndexRepository();
 
   public abstract LowLevelIndexRepository getLowLevelIndexRepository();
 
-  /** return the Cas object for this JCas instantiation */
+  /** 
+   * @return the CAS object for this JCas instantiation 
+   */
   public abstract CAS getCas();
 
-  /** internal use */
+  /* internal use */
   public abstract CASImpl getCasImpl();
 
-  /** internal use */
+  /* internal use */
   public abstract LowLevelCAS getLowLevelCas();
 
   /**
@@ -115,48 +119,48 @@ public interface JCas extends AbstractCa
   /**
    * get the JCas x_Type instance for a particular Java instance of a type
    * 
-   * @param instance
+   * @param instance instance
    * @return the associated xxx_Type instance
    * @deprecated use instance.jcasType instead - faster
    */
   @Deprecated
   public abstract TOP_Type getType(TOP instance);
 
-  /**
+  /*
    * Internal use - looks up a type-name-string in the CAS type system and returns the Cas Type
    * object. Throws CASException if the type isn't found
    */
   public abstract Type getRequiredType(String s) throws CASException;
 
-  /**
+  /*
    * Internal use - look up a feature-name-string in the CAS type system and returns the Cas Feature
    * object. Throws CASException if the feature isn't found
    */
   public abstract Feature getRequiredFeature(Type t, String s) throws CASException;
 
-  /**
+  /*
    * Internal Use - look up a feature-name-string in the CAS type system and returns the Cas Feature
    * object. If the feature isn't found, adds an exception to the errorSet but doesn't throw
    */
 
   public abstract Feature getRequiredFeatureDE(Type t, String s, String rangeName, boolean featOkTst);
 
-  /**
+  /*
    * Internal Use - sets the corresponding Java instance for a Cas instance
    */
   public abstract void putJfsFromCaddr(int casAddr, FeatureStructure fs);
 
-  /**
+  /*
    * Internal Use - sets the corresponding Java instance for a Cas instance
    */
   public abstract TOP getJfsFromCaddr(int casAddr);
 
-  /**
+  /*
    * Internal Use. 
    */
   public abstract void checkArrayBounds(int fsRef, int pos);
 
-  /**
+  /*
    * Internal Use - throw missing feature exception at runtime.
    */
   public void throwFeatMissing(String feat, String type);
@@ -164,6 +168,8 @@ public interface JCas extends AbstractCa
   /**
    * @deprecated As of v2.0, use {#getView(String)}. From the view you can access the Sofa data, or
    *             call {@link #getSofa()} if you truly need to access the SofaFS object.
+   * @param sofaID -
+   * @return the Sofa
    */
   @Deprecated
   public abstract Sofa getSofa(SofaID sofaID);
@@ -190,7 +196,7 @@ public interface JCas extends AbstractCa
    *          same as the associated Sofa name).
    * 
    * @return The view corresponding to this local name.
-   * @throws CASRuntimeException
+   * @throws CASException -
    *           if a View with this name already exists in this CAS
    */
   public abstract JCas createView(String sofaID) throws CASException;
@@ -202,6 +208,7 @@ public interface JCas extends AbstractCa
    *          a Sofa feature structure in this CAS.
    * 
    * @return The JCas view for the given Sofa.
+   * @throws CASException -
    */  
   public abstract JCas getJCas(Sofa sofa) throws CASException;
 
@@ -233,6 +240,7 @@ public interface JCas extends AbstractCa
    * avoid creating multiple copies of it. All uses can use the same valuee because it is not
    * updatable (it has no subfields). This is initialized lazily on first reference, and reset when
    * the CAS is reset.
+   * @return 0-length instance of a StringArray
    */
 
   public abstract StringArray getStringArray0L();
@@ -242,6 +250,7 @@ public interface JCas extends AbstractCa
    * avoid creating multiple copies of it. All uses can use the same valuee because it is not
    * updatable (it has no subfields). This is initialized lazily on first reference, and reset when
    * the CAS is reset.
+   * @return 0-length instance of an IntegerArray
    */
   public abstract IntegerArray getIntegerArray0L();
 
@@ -250,7 +259,7 @@ public interface JCas extends AbstractCa
    * avoid creating multiple copies of it. All uses can use the same valuee because it is not
    * updatable (it has no subfields). This is initialized lazily on first reference, and reset when
    * the CAS is reset.
-   */
+   * @return 0-length instance of a FloatArray
   public abstract FloatArray getFloatArray0L();
 
   /**
@@ -258,6 +267,7 @@ public interface JCas extends AbstractCa
    * avoid creating multiple copies of it. All uses can use the same valuee because it is not
    * updatable (it has no subfields). This is initialized lazily on first reference, and reset when
    * the CAS is reset.
+   * @return 0-length instance of a FSArray
    */
   public abstract FSArray getFSArray0L();
 
@@ -279,7 +289,7 @@ public interface JCas extends AbstractCa
    *          same as the associated Sofa name).
    * 
    * @return The view corresponding to this local name.
-   * @throws CASException
+   * @throws CASException passthru
    *           
    */
   JCas getView(String localViewName) throws CASException;
@@ -293,6 +303,7 @@ public interface JCas extends AbstractCa
    *          a Sofa feature structure in the CAS
    * 
    * @return The view for the given Sofa
+   * @throws CASException passthru
    */
   JCas getView(SofaFS aSofa) throws CASException;
 
@@ -319,7 +330,8 @@ public interface JCas extends AbstractCa
   
   /**
    * Create a Subject of Analysis. The new sofaFS is automatically added to the SofaIndex.
-   * 
+   * @param sofaID the SofA ID
+   * @param mimeType the mime type
    * @return The sofaFS.
    * 
    * @deprecated As of v2.0, use {@link #createView(String)} instead.
@@ -342,6 +354,7 @@ public interface JCas extends AbstractCa
    *          The input iterator.
    * @param cons
    *          The constraint specifying what structures should be returned.
+   * @param <T> the particular FeatureStructure type
    * @return An iterator over FSs.
    */
   <T extends FeatureStructure> FSIterator<T> createFilteredIterator(FSIterator<T> it, FSMatchConstraint cons);
@@ -375,6 +388,7 @@ public interface JCas extends AbstractCa
    * 
    * @param it
    *          The <code>FSListIterator</code> to be wrapped.
+   * @param <T> The particular Feature Structure type
    * @return An equivalent <code>ListIterator</code>.
    */
   <T extends FeatureStructure> ListIterator<T> fs2listIterator(FSIterator<T> it);
@@ -458,8 +472,8 @@ public interface JCas extends AbstractCa
    * Sets the language for this document. This value sets the language feature of the special
    * instance of DocumentAnnotation associated with this CAS.
    * 
-   * @param languageCode
-   * @throws CASRuntimeException
+   * @param languageCode the language code
+   * @throws CASRuntimeException passthru
    */
   void setDocumentLanguage(String languageCode) throws CASRuntimeException;
 
@@ -589,6 +603,7 @@ public interface JCas extends AbstractCa
    *          passed as an integer using the form
    *          MyAnnotationType.type
    * @return The standard annotation index, restricted to <code>type</code>.
+   * @throws CASRuntimeException -
    */
   AnnotationIndex<Annotation> getAnnotationIndex(int type) throws CASRuntimeException;
 
@@ -599,7 +614,8 @@ public interface JCas extends AbstractCa
    * 
    * @return an iterator which returns all views.  Each object returned by
    *   the iterator is of type JCas.
-   */
+   * @throws CASException -
+  */
   Iterator<JCas> getViewIterator() throws CASException;  
   
   /**
@@ -616,6 +632,7 @@ public interface JCas extends AbstractCa
    * 
    * @return an iterator which returns all views with the given name prefix.  
    *   Each object returned by the iterator is of type JCas.
+   * @throws CASException -
    */
   Iterator<JCas> getViewIterator(String localViewNamePrefix) throws CASException;
 }
\ No newline at end of file

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/JCasRegistry.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/JCasRegistry.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/JCasRegistry.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/JCasRegistry.java Mon Jan  6 20:15:45 2014
@@ -32,7 +32,7 @@ public class JCasRegistry {
    * Registers a JCas cover class with this registry.  The registry will assign
    * it a unique index, which is then used by the cover-class to identify itself
    * to the JCas implementation.
-   * 
+   * @param aJCasCoverClass the class to register
    * @return the unique index value for this class.
    */
   public static synchronized int register(Class aJCasCoverClass) {
@@ -47,6 +47,11 @@ public class JCasRegistry {
    * this allows the runtime to skip this test.
    * <p>
    * This is reserved for future use; it currently always returns true.
+   * @param fullyQualTypeName fully qualified type name
+   * @return true if that type should have run-time checking for use of fields
+   * defined in the JCas Model which are not present in the CAS. If false, all fields
+   * in the JCas must be in the CAS type system at instantiation time, or an exception is thrown;
+   * this allows the runtime to skip this test. 
    */
   public static boolean getFeatOkTst(String fullyQualTypeName) {
     return true;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/cas/Sofa.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/cas/Sofa.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/cas/Sofa.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/cas/Sofa.java Mon Jan  6 20:15:45 2014
@@ -62,7 +62,7 @@ public class Sofa extends TOP implements
 	protected Sofa() {
 	}
 
-	/*
+	/**
    * Internal - constructor used by generator
    * 
    * @generated
@@ -102,7 +102,7 @@ public class Sofa extends TOP implements
 	// *--------------*
 	// * Feature: sofaNum
   // ** Note: this gets the same feature, sofaNum, as getSofaRef, below
-	/*
+	/**
    * getter for sofaNum - gets
    * 
    * @generated
@@ -116,7 +116,7 @@ public class Sofa extends TOP implements
 	// *--------------*
 	// * Feature: sofaID
 
-	/*
+	/**
    * getter for sofaID - gets
    * 
    * @generated
@@ -130,7 +130,7 @@ public class Sofa extends TOP implements
 	// *--------------*
 	// * Feature: mimeType
 
-	/*
+	/**
    * getter for mimeType - gets
    * 
    * @generated

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/cas/Sofa_Type.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/cas/Sofa_Type.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/cas/Sofa_Type.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/cas/Sofa_Type.java Mon Jan  6 20:15:45 2014
@@ -84,7 +84,7 @@ public class Sofa_Type extends TOP_Type 
   /** @generated */
   final int casFeatCode_mimeType;
 
-  /*
+  /**
    * initialize variables to correspond with Cas Type and Features
    * 
    * @generated

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/impl/JCasImpl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/impl/JCasImpl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/impl/JCasImpl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/impl/JCasImpl.java Mon Jan  6 20:15:45 2014
@@ -508,7 +508,7 @@ public class JCasImpl extends AbstractCa
    * 
    * @param cl
    *                class loader to switch to 
-   * @throws CASException
+   * @throws CASException passthru
    */
   public void switchClassLoader(ClassLoader cl) {
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/tcas/Annotation.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/tcas/Annotation.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/tcas/Annotation.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/tcas/Annotation.java Mon Jan  6 20:15:45 2014
@@ -99,6 +99,9 @@ public class Annotation extends Annotati
 
   /**
    * Constructor with begin and end passed as arguments
+   * @param jcas JCas
+   * @param begin begin offset
+   * @param end   end offset
    */
   public Annotation(JCas jcas, int begin, int end) {
     this(jcas); // forward to constructor
@@ -121,6 +124,8 @@ public class Annotation extends Annotati
 
   /**
    * @deprecated
+   * @see Annotation#getBegin()
+   * @return the Annotation "begin" feature value
    */
   @Deprecated
   public int getStart() {

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/tcas/Annotation_Type.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/tcas/Annotation_Type.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/tcas/Annotation_Type.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/jcas/tcas/Annotation_Type.java Mon Jan  6 20:15:45 2014
@@ -88,6 +88,8 @@ public class Annotation_Type extends org
 
   /**
    * @see org.apache.uima.cas.text.AnnotationFS#getCoveredText()
+   * @param inst low level reference to a Feature Structure
+   * @return null or the covered text
    */
   public String getCoveredText(int inst) { 
     final CASImpl casView = ll_cas.ll_getSofaCasView(inst);

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/tools/InstallationTester.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/tools/InstallationTester.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/tools/InstallationTester.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/tools/InstallationTester.java Mon Jan  6 20:15:45 2014
@@ -140,7 +140,7 @@ public class InstallationTester {
    * 
    * @return a ResourceManager object with the information from the PackageBrowser object.
    * 
-   * @throws IOException
+   * @throws IOException passthru
    */
   private static ResourceManager getResourceManager(PackageBrowser pkgBrowser) throws IOException {
     ResourceManager resourceMgr = UIMAFramework.newDefaultResourceManager();
@@ -163,7 +163,7 @@ public class InstallationTester {
    * @param pkgBrowser
    *          packageBrowser object of an installed PEAR package
    * 
-   * @throws IOException
+   * @throws IOException passthru
    */
   private static void setSystemProperties(PackageBrowser pkgBrowser) throws IOException {
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/util/StringUtil.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/util/StringUtil.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/util/StringUtil.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/util/StringUtil.java Mon Jan  6 20:15:45 2014
@@ -192,8 +192,8 @@ public class StringUtil {
 
   /**
    * Converts a given input string to another string that can be used as a 'replacement' string in
-   * the <code>String::replaceAll(String regex, String replacement)</code> method. <br>Characters
-   * to be escaped => "\ $".
+   * the <code>String::replaceAll(String regex, String replacement)</code> method. <br>
+   * Characters to be escaped are: "\ $".
    * 
    * @param string
    *          The given input string.
@@ -210,7 +210,8 @@ public class StringUtil {
 
   /**
    * Converts a given input string to another string that can be used in all 'regular expression'
-   * methods. <br>Characters to be escaped => "\ . $ ^ { [ ( | ) * + ?".
+   * methods. <br>
+   * Characters to be escaped are: "\ . $ ^ { [ ( | ) * + ?".
    * 
    * @param string
    *          The given input string.

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/util/XMLUtil.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/util/XMLUtil.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/util/XMLUtil.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/pear/util/XMLUtil.java Mon Jan  6 20:15:45 2014
@@ -353,6 +353,8 @@ public class XMLUtil {
 
   /**
    * Prints SAX error message.
+   * @param type type
+   * @param ex exception
    */
   public static void printError(String type, SAXParseException ex) {
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/CasManager.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/CasManager.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/CasManager.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/CasManager.java Mon Jan  6 20:15:45 2014
@@ -90,7 +90,7 @@ public interface CasManager extends CasO
 
   /**
    * Gets an empty CAS. An AnalysisEngine may only call this method after it has first called
-   * {@link #defineCasPool(String, int, Properties)} and established a CAS Pool of size > 0. The CAS
+   * {@link #defineCasPool(String, int, Properties)} and established a CAS Pool of size &gt; 0. The CAS
    * Manager maintains a separate pool for each AnalysisEngine. This method may block if the CAS
    * pool does not contain any free instances.
    * 
@@ -122,6 +122,7 @@ public interface CasManager extends CasO
    *          The CAS
    * @param requiredInterface
    *          interface to get. Currently must be either CAS or JCas.
+   * @return the CAS Interface
    */
   AbstractCas getCasInterface(CAS cas, Class<? extends AbstractCas> requiredInterface);
   

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ConfigurationManager.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ConfigurationManager.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ConfigurationManager.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ConfigurationManager.java Mon Jan  6 20:15:45 2014
@@ -45,6 +45,7 @@ public interface ConfigurationManager {
    *          corresponds to the path through the aggregate resource, e.g /subAE1/annotator1.
    * @param aResourceMetaData
    *          metadata object containing the configuration parameter declarations and settings.
+   * @param externalSettings the external overrides
    * 
    * @throws ResourceConfigurationException
    *           if the configuration settings are invalid
@@ -86,6 +87,7 @@ public interface ConfigurationManager {
    * @param aQualifiedParamName
    *          the fully-qualified configuration parameter name. This is of the form
    *          <code>ContextName + / + ParameterName</code>.
+   * @param aGroupName the name of the parameter group
    * 
    * @return the value of the parameter with the given name. The caller is expected to know the data
    *         type of the parameter. If the parameter does not exist,<code>null</code> is

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceInitializationException.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceInitializationException.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceInitializationException.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceInitializationException.java Mon Jan  6 20:15:45 2014
@@ -415,7 +415,7 @@ public class ResourceInitializationExcep
 
   /**
    * Message key for a standard UIMA exception message: "The aggregate AnalysisEngine "{0}" declared
-   * an empty <flowController/> element. You must specify an import or a flowControllerDescription."
+   * an empty &lt;flowController/&gt; element. You must specify an import or a flowControllerDescription."
    */
   public static final String EMPTY_FLOW_CONTROLLER_DECLARATION = "empty_flow_controller_declaration";
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceManager.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceManager.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceManager.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceManager.java Mon Jan  6 20:15:45 2014
@@ -67,6 +67,7 @@ public interface ResourceManager {
    * 
    * @return the absolute URL of an actual file in the datapath or classpath, null if no file
    *         matching <code>aRelativePath</code> is found.
+   * @throws MalformedURLException if the path cannot be converted to a URL
    */
   public URL resolveRelativePath(String aRelativePath) throws MalformedURLException;
 
@@ -79,10 +80,11 @@ public interface ResourceManager {
    * @return the Resource registered under <code>aName</code>, <code>null</code> if none
    *         exists.
    * 
-   * @throws ResourceInitializationException
+   * @throws ResourceAccessException
    *           if the requested resource could not be initialized. A common cause is that it
    *           requires parameters and the {@link #getResource(String,String[])} method should have
    *           been called instead of this method.
+   * @throws ResourceAccessException tbd
    */
   public Object getResource(String aName) throws ResourceAccessException;
 
@@ -98,7 +100,7 @@ public interface ResourceManager {
    * @return the requested Resource, <code>null</code> if there is no resource registered under
    *         the name <code>aName</code>.
    * 
-   * @throws ResourceInitializationException
+   * @throws ResourceAccessException
    *           if there is a resource registered under <code>aName</code> but it could not be
    *           instantiated for the specified parameters.
    */
@@ -279,6 +281,7 @@ public interface ResourceManager {
 
   /**
    * Gets the CasManager, which manages the creation and pooling of CASes.
+   * @return the CasManager
    */
   public CasManager getCasManager();
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceManagerPearWrapper.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceManagerPearWrapper.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceManagerPearWrapper.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceManagerPearWrapper.java Mon Jan  6 20:15:45 2014
@@ -35,7 +35,7 @@ public interface ResourceManagerPearWrap
    * This method is called immediately after the factory creates the 
    * object (using the 0-argument constructor), and it initializes all
    * the fields in this wrapper to share the values with their parent.
-   * @param resourceManager
+   * @param resourceManager the parent ResourceManager
    */
   void initializeFromParentResourceManager(ResourceManager resourceManager);
 }

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceServiceStub.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceServiceStub.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceServiceStub.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/ResourceServiceStub.java Mon Jan  6 20:15:45 2014
@@ -31,6 +31,7 @@ public interface ResourceServiceStub {
    * Performs service call to retrieve resource meta data.
    * 
    * @return metadata for the Resource
+   * @throws ResourceServiceException passthru
    */
   public ResourceMetaData callGetMetaData() throws ResourceServiceException;
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/Session.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/Session.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/Session.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/Session.java Mon Jan  6 20:15:45 2014
@@ -36,9 +36,17 @@ import java.io.Serializable;
  * 
  */
 public interface Session extends Serializable {
-  /** Stores an object in the Session */
+  /**
+   * Stores an object in the Session
+   * @param aKey Key
+   * @param aValue Value
+   */
   public void put(String aKey, Object aValue);
 
-  /** Gets an object from the Session */
+  /**
+   * Gets an object from the Session
+   * @param aKey Key  
+   * @return the associated value
+   */
   public Object get(String aKey);
 }

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/ConfigurationManagerImplBase.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/ConfigurationManagerImplBase.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/ConfigurationManagerImplBase.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/ConfigurationManagerImplBase.java Mon Jan  6 20:15:45 2014
@@ -341,7 +341,7 @@ public abstract class ConfigurationManag
    *          name of context containing this parameter
    * @param aExternalOverrides
    *          settings for parameters with external overrides 
-   * @throws ResourceConfigurationException 
+   * @throws ResourceConfigurationException passthru
    */
   protected void declareParameters(String aGroupName, ConfigurationParameter[] aParams,
           ConfigurationParameterSettings aSettings, String aContextName, Settings aExternalOverrides)

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/SessionNamespaceView_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/SessionNamespaceView_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/SessionNamespaceView_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/SessionNamespaceView_impl.java Mon Jan  6 20:15:45 2014
@@ -21,9 +21,7 @@ package org.apache.uima.resource.impl;
 
 import org.apache.uima.resource.Session;
 
-/**
- * 
- */
+
 public class SessionNamespaceView_impl implements Session {
   private static final long serialVersionUID = 7585276862479207970L;
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/Session_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/Session_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/Session_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/impl/Session_impl.java Mon Jan  6 20:15:45 2014
@@ -25,9 +25,7 @@ import java.util.Map;
 
 import org.apache.uima.resource.Session;
 
-/**
- * 
- */
+
 public class Session_impl implements Session {
 
   private static final long serialVersionUID = -8525494546736102324L;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/Capability.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/Capability.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/Capability.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/Capability.java Mon Jan  6 20:15:45 2014
@@ -132,7 +132,7 @@ public interface Capability extends Meta
    * @param aInputSofas
    *          an array of strings containing SofA names
    */
-  /** Reserved for future use. */
+  /* Reserved for future use. */
   public void setInputSofas(String[] aInputSofas);
 
   /**
@@ -223,14 +223,14 @@ public interface Capability extends Meta
   /**
    * A convenience method that adds an input Sofa name to this Capability.
    * 
-   * @param aSofaName
+   * @param aSofaName the sofa to add to the inputs
    */
   public void addInputSofa(String aSofaName);
 
   /**
    * A convenience method that adds an output Sofa name to this Capability.
    * 
-   * @param aSofaName
+   * @param aSofaName the sofa to add as an output 
    */
   public void addOutputSofa(String aSofaName);
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/ConfigurationGroup.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/ConfigurationGroup.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/ConfigurationGroup.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/ConfigurationGroup.java Mon Jan  6 20:15:45 2014
@@ -31,7 +31,7 @@ import org.apache.uima.UIMA_UnsupportedO
 public interface ConfigurationGroup extends MetaDataObject {
 
   /**
-   * Gets the group names for this <code>ConfigurationGroup</object> object.
+   * Gets the group names for this <code>ConfigurationGroup</code> object.
    * 
    * @return an array of group names.  Names are not allowed to contain
    *   whitespace.
@@ -39,7 +39,7 @@ public interface ConfigurationGroup exte
   public String[] getNames();
 
   /**
-   * Sets the group names for this <code>ConfigurationGroup</object> object.
+   * Sets the group names for this <code>ConfigurationGroup</code> object.
    * 
    * @param aNames an array of group names.  Names are not allowed to
    *   contain whitespace.

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/ConfigurationParameterDeclarations.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/ConfigurationParameterDeclarations.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/ConfigurationParameterDeclarations.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/ConfigurationParameterDeclarations.java Mon Jan  6 20:15:45 2014
@@ -238,8 +238,8 @@ public interface ConfigurationParameterD
    * A value for the <code>searchStrategy</code> property that is useful when ISO language and
    * country codes are used as configuration group names. If there is no value declared in a group,
    * look in more general groups. The fallback sequence is
-   * <code>lang-country-region -> lang-country -> 
-   * lang -> default</code>. For example, if a
+   * <code>lang-country-region -%gt; lang-country -%gt; 
+   * lang -%gt; default</code>. For example, if a
    * request is made for the value of a parameter in the "en-GB" group and no such group exists, the
    * value from the "en" group will be used instead.
    */

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/ExternalResourceBinding_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/ExternalResourceBinding_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/ExternalResourceBinding_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/ExternalResourceBinding_impl.java Mon Jan  6 20:15:45 2014
@@ -28,9 +28,7 @@ import org.apache.uima.resource.metadata
 public class ExternalResourceBinding_impl extends MetaDataObject_impl implements
         ExternalResourceBinding {
 
-  /**
-   * 
-   */
+  
   private static final long serialVersionUID = 8736222753308388218L;
 
   private String mResourceName;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/Import_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/Import_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/Import_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/Import_impl.java Mon Jan  6 20:15:45 2014
@@ -37,9 +37,7 @@ import org.xml.sax.helpers.AttributesImp
  * 
  */
 public class Import_impl extends MetaDataObject_impl implements Import {
-  /**
-   * 
-   */
+  
   private static final long serialVersionUID = 6876757002913848998L;
 
   private String mName;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/MetaDataObject_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/MetaDataObject_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/MetaDataObject_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/resource/metadata/impl/MetaDataObject_impl.java Mon Jan  6 20:15:45 2014
@@ -865,7 +865,7 @@ public abstract class MetaDataObject_imp
    *          namespace for this object
    * @param aContentHandler
    *          ContentHandler to which this object will send events describing its XML representation
-   * @throws SAXException         
+   * @throws SAXException  passthru       
    */
 
   protected void writeMapPropertyToXml(String aPropName, String aXmlElementName,
@@ -1397,10 +1397,10 @@ public abstract class MetaDataObject_imp
    *     maybeOutputCommentsAfter  
    *   
    * Detect top level (by fact that parent is null), and for top level:
-   *   collect all above -> output before startelement  
+   *   collect all above -%gt; output before startelement  
    *     BUT, note that the sax parser doesn't do callbacks for text (blank lines) before the
    *       start element, so all we can collect are the comment lines.
-   *   collect all below -> output after endelement
+   *   collect all below -%gt; output after endelement
    *   
    * For normal element node, "start":
    *   --> output before element
@@ -1532,9 +1532,9 @@ public abstract class MetaDataObject_imp
    *      <someElement>  some text
    *         
    * @param startNode - the node corresponding to the start or end element just outputted
-   * @param contentHandler
-   * @throws DOMException
-   * @throws SAXException
+   * @param contentHandler the content handler
+   * @throws DOMException passthru
+   * @throws SAXException passthru
    */
   private void outputCoIwAfterElement(Node startNode, ContentHandler contentHandler) throws DOMException, SAXException {
     if (null != startNode) {

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/search/Filter.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/search/Filter.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/search/Filter.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/search/Filter.java Mon Jan  6 20:15:45 2014
@@ -36,7 +36,7 @@ import org.apache.uima.util.XMLizable;
  * The only syntax the indexers are required to import is the <code>FeatureValue</code> syntax,
  * which permits very simple expressions that test the values of features. Expressions using this
  * syntax take the form <code>&lt;FeatureName&gt; &lt;Operator&gt; &lt;Literal&gt;</code>, where
- * FeatureName is a CAS feature name, Operator is either =, !=, &lt;, &lt;=, &gt, or &gt;=, and
+ * FeatureName is a CAS feature name, Operator is either =, !=, &lt;, &lt;=, &gt;, or &ge;=, and
  * Literal is an integer, floating point number (no exponent syntax supported) or string literal
  * enclosed in double quotes, with embedded quotes and backslashes escaped by a backslash. For
  * example, the following are valid filters:
@@ -44,7 +44,7 @@ import org.apache.uima.util.XMLizable;
  * <li>foo = "hello world"</li>
  * <li>foo &lt; 42 </li>
  * <li>bar7 = "\"Blah,\" he said."
- * <li>bar7 >= 0.5</li>
+ * <li>bar7 &gt;= 0.5</li>
  * </ul>
  * This object implements the {@link XMLizable} interface and can be parsed from an XML
  * representation.

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/search/impl/Mapping_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/search/impl/Mapping_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/search/impl/Mapping_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/search/impl/Mapping_impl.java Mon Jan  6 20:15:45 2014
@@ -24,9 +24,7 @@ import org.apache.uima.resource.metadata
 import org.apache.uima.resource.metadata.impl.XmlizationInfo;
 import org.apache.uima.search.Mapping;
 
-/**
- * 
- */
+
 public class Mapping_impl extends MetaDataObject_impl implements Mapping {
 
   private static final long serialVersionUID = -2371976614485187381L;

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/uimacpp/UimacppAnalysisComponent.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/uimacpp/UimacppAnalysisComponent.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/uimacpp/UimacppAnalysisComponent.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/uimacpp/UimacppAnalysisComponent.java Mon Jan  6 20:15:45 2014
@@ -302,9 +302,7 @@ public class UimacppAnalysisComponent ex
     return 1;
   }
 
-  /**
-   * 
-   */
+  
   public void batchProcessComplete() throws AnalysisEngineProcessException {
     try {
       if (engine != null) {
@@ -316,9 +314,7 @@ public class UimacppAnalysisComponent ex
     }
   }
 
-  /**
-   * 
-   */
+  
   public void collectionProcessComplete() throws AnalysisEngineProcessException {
     try {
       if (engine != null) {

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasCreationUtils.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasCreationUtils.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasCreationUtils.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasCreationUtils.java Mon Jan  6 20:15:45 2014
@@ -344,7 +344,8 @@ public class CasCreationUtils {
    * @param aPerformanceTuningSettings
    *                Properties object containing framework performance tuning settings using key
    *                names defined on {@link UIMAFramework} interface
-   * 
+   * @param aResourceManager 
+   *                the resource manager
    * @return a new CAS instance
    * 
    * @throws ResourceInitializationException
@@ -473,7 +474,8 @@ public class CasCreationUtils {
    *                type priorities to install in the CAS
    * @param aFsIndexes
    *                indexes to install in the CAS
-   * 
+   * @param aPerformanceTuningSettings
+   *                the settings for performance tuning
    * @return a new CAS instance
    * 
    * @throws ResourceInitializationException
@@ -495,6 +497,8 @@ public class CasCreationUtils {
    *                type priorities to install in the CAS
    * @param aFsIndexes
    *                indexes to install in the CAS
+   * @param aPerformanceTuningSettings
+   *                the settings for performance tuning
    * @param aResourceManager
    *                resource manager, which is used to set the JCas ClassLoader for the new CAS
    * 
@@ -1896,7 +1900,7 @@ public class CasCreationUtils {
    *         information in all of the objects in <code>aComponentDescriptionOrMetaData</code>
    *         (including all components of aggregate AnalysisEngines)
    * 
-   * @throws ResourceInitialziationException
+   * @throws ResourceInitializationException
    *                 if a failure occurs because an import could not be resolved
    */
   public static List<ProcessingResourceMetaData> getMetaDataList(Collection<? extends MetaDataObject> aComponentDescriptionOrMetaData,
@@ -2061,7 +2065,7 @@ public class CasCreationUtils {
    *         information in all of the objects in <code>aComponentDescriptionOrMetaData</code>
    *         (including all components of aggregate AnalysisEngines)
    * 
-   * @throws ResourceInitialziationException
+   * @throws ResourceInitializationException
    *                 if a failure occurs because an import could not be resolved
    */
   public static List<ProcessingResourceMetaData> getMetaDataList(Collection<? extends MetaDataObject> aComponentDescriptionOrMetaData,

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasPool.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasPool.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasPool.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasPool.java Mon Jan  6 20:15:45 2014
@@ -136,7 +136,7 @@ public class CasPool {
    *          the number of CAS instances in the pool
    * @param aMetaData
    *          metadata that includes the type system for the CAS
-   * 
+   * @param aResourceManager Resource Manager
    * @throws ResourceInitializationException
    *           if the CAS instances could not be created
    */
@@ -161,6 +161,7 @@ public class CasPool {
    * @param aPerformanceTuningSettings
    *          Properties object containing framework performance tuning settings using key names
    *          defined on {@link UIMAFramework} interface
+   * @throws ResourceInitializationException -
    */
   public CasPool(int aNumInstances, CasDefinition aCasDefinition,
           Properties aPerformanceTuningSettings) throws ResourceInitializationException {
@@ -180,6 +181,7 @@ public class CasPool {
    * @param aPerformanceTuningSettings
    *          Properties object containing framework performance tuning settings using key names
    *          defined on {@link UIMAFramework} interface
+   * @throws ResourceInitializationException -
    */
   public CasPool(int aNumInstances, CasManager aCasManager,
           Properties aPerformanceTuningSettings) throws ResourceInitializationException {

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasToInlineXml.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasToInlineXml.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasToInlineXml.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/CasToInlineXml.java Mon Jan  6 20:15:45 2014
@@ -74,6 +74,8 @@ public class CasToInlineXml {
 
   /**
    * Formats a CAS as a String.
+   * @param aCAS the cas to format as an xml string
+   * @return the XML representation of the CAS
    */
   public String format(CAS aCAS) throws CASException {
     return generateXML(aCAS, null);
@@ -81,6 +83,10 @@ public class CasToInlineXml {
 
   /**
    * Formats a CAS as a String. Only FeatureStructures matching the given filter will be output.
+   * @param aCAS CAS
+   * @param aFilter a filter to limit the Feature Structures 
+   * @return the XML representation
+   * @throws CASException -
    */
   public String format(CAS aCAS, FSMatchConstraint aFilter) throws CASException {
     return generateXML(aCAS, aFilter);
@@ -91,6 +97,7 @@ public class CasToInlineXml {
    * 
    * @param aCAS
    *          CAS to generate from
+   * @return the inline XML version of the CAS
    */
   public String generateXML(CAS aCAS) throws CASException {
     return generateXML(aCAS, null);
@@ -104,6 +111,8 @@ public class CasToInlineXml {
    * @param aFilter
    *          constraint that determines which annotations are included in the output. If null (or
    *          omitted), all annotations are included.
+   * @return the inline XML version of the CAS
+   * @throws CASException -
    */
   public String generateXML(CAS aCAS, FSMatchConstraint aFilter) throws CASException {
     ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream();

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/FileUtils.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/FileUtils.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/FileUtils.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/FileUtils.java Mon Jan  6 20:15:45 2014
@@ -350,6 +350,7 @@ public class FileUtils {
    * @param relativeToDir
    *          directory that the path should be relative to
    * @return a relative path. This always uses / as the separator character.
+   * @throws IOException -
    */
   public static String findRelativePath(File file, File relativeToDir) throws IOException {
     String canonicalFile = file.getCanonicalPath();

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/Settings.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/Settings.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/Settings.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/Settings.java Mon Jan  6 20:15:45 2014
@@ -50,7 +50,7 @@ public interface Settings {
    *   can span multiple lines without using a final \ 
    * 
    * @param in - Stream holding properties
-   * @throws IOException
+   * @throws IOException if name characters illegal
    */
   public void load(InputStream in) throws IOException;
 
@@ -59,7 +59,7 @@ public interface Settings {
    *   UimaExternalOverrides
    * Files are loaded in order --- so in descending priority.
    * 
-   * @throws ResourceConfigurationException 
+   * @throws ResourceConfigurationException wraps IOException
    */
   public void loadSystemDefaults() throws ResourceConfigurationException;
   

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/SimpleResourceFactory.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/SimpleResourceFactory.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/SimpleResourceFactory.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/SimpleResourceFactory.java Mon Jan  6 20:15:45 2014
@@ -191,6 +191,7 @@ public class SimpleResourceFactory imple
    * @param aResourceClassName
    *          the name of a subclass of <code>Resource</code> that is to be instantiated from
    *          resource specifiers of the given class.
+   * @throws ClassNotFoundException -
    */
   @SuppressWarnings("unchecked")
   public void addMapping(String aSpecifierInterfaceName, String aResourceClassName)

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/TCasToInlineXml.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/TCasToInlineXml.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/TCasToInlineXml.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/TCasToInlineXml.java Mon Jan  6 20:15:45 2014
@@ -51,7 +51,7 @@ import org.xml.sax.helpers.AttributesImp
  */
 @Deprecated
 public class TCasToInlineXml implements TCasFormatter {
-  /**
+  /*
    * This destroy method does nothing.
    * 
    * @see org.apache.uima.resource.Resource#destroy()
@@ -59,21 +59,21 @@ public class TCasToInlineXml implements 
   public void destroy() {
   }
 
-  /**
+  /*
    * @see org.apache.uima.util.TCasFormatter#format(CAS)
    */
   public String format(CAS aCAS) throws CASException {
     return generateXML(aCAS, null);
   }
 
-  /**
+  /*
    * @see org.apache.uima.util.TCasFormatter#format(CAS, FSMatchConstraint)
    */
   public String format(CAS aCAS, FSMatchConstraint aFilter) throws CASException {
     return generateXML(aCAS, aFilter);
   }
 
-  /**
+  /*
    * Generates inline XML from a CAS.
    * 
    * @param aCAS
@@ -83,7 +83,7 @@ public class TCasToInlineXml implements 
     return generateXML(aCAS, null);
   }
 
-  /**
+  /*
    * Generates inline XML from a CAS.
    * 
    * @param aCAS

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/TypeSystemUtil.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/TypeSystemUtil.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/TypeSystemUtil.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/TypeSystemUtil.java Mon Jan  6 20:15:45 2014
@@ -136,6 +136,7 @@ public class TypeSystemUtil {
    * 
    * @param aType
    *          the type, which must be a subtype of uima.cas.String
+   * @param aTypeSystem the type system to use
    * @return array of allowed values for <code>aType</code> TODO - this should be a method on
    *         Type.
    */

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/UriUtils.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/UriUtils.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/UriUtils.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/UriUtils.java Mon Jan  6 20:15:45 2014
@@ -38,9 +38,9 @@ public class UriUtils {
    *   String has quoted (e.g. %20) characters but no other chars needing quoting
    *   String has quoted (e.g. %20) characters and chars needing quoting, not currently quoted
    *     -- this case will throw an exception
-   * @param s
+   * @param s the string to quote
    * @return URI with proper quoting
-   * @throws URISyntaxException 
+   * @throws URISyntaxException passthru
    */
   public static URI quote (String s) throws URISyntaxException {
     if (-1 == s.indexOf('%')) {
@@ -56,9 +56,9 @@ public class UriUtils {
   /**
    * Create a URI from a URL, with proper quoting.
    * Already quoted things in the input string are not re-quoted.
-   * @param u
+   * @param u the input URL
    * @return URI with proper quoting
-   * @throws URISyntaxException 
+   * @throws URISyntaxException passthru
    */
 
   public static URI quote(URL u) throws URISyntaxException {
@@ -69,7 +69,7 @@ public class UriUtils {
    * Create a URI from a String, with proper quoting.
    * Already quoted things in the input string are not re-quoted.
    * Mimic exception treatment of URI.create
-   * @param s
+   * @param s the input string
    * @return URI with proper quoting
    */
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/XMLizable.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/XMLizable.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/XMLizable.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/XMLizable.java Mon Jan  6 20:15:45 2014
@@ -43,7 +43,7 @@ public interface XMLizable {
    * instead, as it ensures that output is written in UTF-8 encoding, which is the default encoding 
    * that should be used for XML files.
    * <p>
-   * The XML String that is produced will have a header <code>&lt;?xml version="1.0" encoding="UTF-8"?></code>.  
+   * The XML String that is produced will have a header <code>&lt;?xml version="1.0" encoding="UTF-8"?&gt;</code>.  
    * Therefore you should not write this string out in any encoding other than UTF-8 (for example do not use the
    * default platform encoding), or you will produce output that will not be able to be parsed.
    * 
@@ -52,6 +52,7 @@ public interface XMLizable {
    * 
    * @throws IOException
    *           if an I/O failure occurs
+   * @throws SAXException passthru
    */
   public void toXML(Writer aWriter) throws SAXException, IOException;
 

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/DataIO.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/DataIO.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/DataIO.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/DataIO.java Mon Jan  6 20:15:45 2014
@@ -95,11 +95,11 @@ public class DataIO {
    * For DataOutput, DataInput
    ***************************************************************************************/
   /**
-   * Similar to writeUTF, but ok for strings > 32K bytes long and better for strings < 127
-   * string utf-8 length must be <= Integer.MAX_VALUE - 1 
-   * @param string
-   * @param out
-   * @throws IOException
+   * Similar to writeUTF, but ok for strings &gt; 32K bytes long and better for strings &lt; 127
+   * string utf-8 length must be &le; Integer.MAX_VALUE - 1 
+   * @param string the string to write
+   * @param out the output sink
+   * @throws IOException passthru
    */
   public static void writeUTFv(String string, DataOutput out) throws IOException {
     if (null == string) {
@@ -139,9 +139,9 @@ public class DataIO {
   
   /**
    * DataOutputStream writeShort with checking of argument
-   * @param out
-   * @param v
-   * @throws IOException
+   * @param out the output sink
+   * @param v the value to write
+   * @throws IOException passthru
    */
   public static void writeShort(DataOutput out, int v) throws IOException {
     if (v > Short.MAX_VALUE ||
@@ -154,9 +154,9 @@ public class DataIO {
  
   /**
    * DataOutputStream writeByte with checking of argument
-   * @param out
-   * @param v
-   * @throws IOException
+   * @param out output sink 
+   * @param v the value to write
+   * @throws IOException passthru
    */
   public static void writeByte(DataOutput out, int v) throws IOException {
     if (v > Byte.MAX_VALUE || 
@@ -169,9 +169,9 @@ public class DataIO {
 
   /**
    * Write lower 8 bits 
-   * @param out
-   * @param v
-   * @throws IOException
+   * @param out output sink
+   * @param v the value to write
+   * @throws IOException passthru
    */
   public static void writeUnsignedByte(DataOutput out, int v) throws IOException {
     out.write(v);
@@ -181,9 +181,9 @@ public class DataIO {
    * write a positive or negative number, optimized for fewer bytes near 0
    *   sign put in low order bit, rest of number converted to positive and shifted left 1
    *   max negative written as - 0.
-   * @param out
-   * @param v
-   * @throws IOException
+   * @param out output sink
+   * @param v the value to write
+   * @throws IOException passthru
    */
   // special handling for MIN_VALUE because
   // Math.abs of it "fails".  We instead code it as
@@ -250,9 +250,9 @@ public class DataIO {
    * 
    * Note: value treated as unsigned 32 bit int
    * 
-   * @param out
-   * @param v
-   * @throws IOException
+   * @param out output sink
+   * @param v the value to write
+   * @throws IOException passthru
    */
   public static void writeVnumber(final DataOutput out, final int v) throws IOException {
     if ((v >= 0) && v < 128) {
@@ -312,9 +312,9 @@ public class DataIO {
    * Write a positive long with the fewest bytes possible; up to 127 written as a byte, high order
    * bit on means get another byte.
    * 
-   * @param out
-   * @param v is never negative
-   * @throws IOException
+   * @param out output sink
+   * @param v the value to write is never negative
+   * @throws IOException passthru
    */
   public static void writeVnumber(final DataOutput out, final long v) throws IOException {
     if ((v >= 0) && v < 128) {
@@ -403,9 +403,9 @@ public class DataIO {
 
   /**
    * write array preceded by its length
-   * @param out
-   * @param v
-   * @throws IOException
+   * @param out output sink
+   * @param v the value to write
+   * @throws IOException passthru
    */
   public static void writeIntArray(DataOutput out, int[] v) throws IOException {
     writeVnumber(out, v.length);
@@ -425,9 +425,9 @@ public class DataIO {
   
   /**
    * Write delta encoded value, for increasing values
-   * @param out
-   * @param v
-   * @throws IOException
+   * @param out output sink
+   * @param v the value to write
+   * @throws IOException passthru
    */
   public static void writeIntArrayDelta(DataOutput out, int[] v) throws IOException {
     writeVnumber(out, v.length);

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/JSR47Logger_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/JSR47Logger_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/JSR47Logger_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/JSR47Logger_impl.java Mon Jan  6 20:15:45 2014
@@ -446,8 +446,8 @@ public class JSR47Logger_impl implements
   /**
    * JSR-47 level mapping to UIMA level mapping.
    * 
-   * SEVERE (highest value) -> SEVERE WARNING -> WARNING INFO -> INFO CONFIG -> CONFIG FINE -> FINE
-   * FINER -> FINER FINEST (lowest value) -> FINEST OFF -> OFF ALL -> ALL
+   * SEVERE (highest value) -%gt; SEVERE WARNING -%gt; WARNING INFO -%gt; INFO CONFIG -%gt; CONFIG FINE -%gt; FINE
+   * FINER -%gt; FINER FINEST (lowest value) -%gt; FINEST OFF -%gt; OFF ALL -%gt; ALL
    * 
    * @param level
    *          uima level

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/Log4jLogger_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/Log4jLogger_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/Log4jLogger_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/Log4jLogger_impl.java Mon Jan  6 20:15:45 2014
@@ -414,8 +414,8 @@ public class Log4jLogger_impl implements
 
    /**
     * log4j level mapping to UIMA level mapping. SEVERE (highest value) ->
-    * SEVERE WARNING -> WARNING INFO -> INFO CONFIG -> CONFIG FINE -> FINE FINER ->
-    * FINER FINEST (lowest value) -> FINEST OFF -> OFF ALL -> ALL
+    * SEVERE WARNING -%gt; WARNING INFO -%gt; INFO CONFIG -%gt; CONFIG FINE -%gt; FINE FINER ->
+    * FINER FINEST (lowest value) -%gt; FINEST OFF -%gt; OFF ALL -%gt; ALL
     * 
     * @param level
     *           uima level

Modified: uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/Settings_impl.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/Settings_impl.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/Settings_impl.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/main/java/org/apache/uima/util/impl/Settings_impl.java Mon Jan  6 20:15:45 2014
@@ -81,7 +81,7 @@ public class Settings_impl implements Se
    * May be called multiple times.
    * 
    * @param in - Stream holding properties
-   * @throws IOException
+   * @throws IOException if name characters illegal
    */
   public void load(InputStream in) throws IOException {
     // Process each logical line (after blanks & comments removed and continuations extended)
@@ -125,7 +125,7 @@ public class Settings_impl implements Se
   /**
    * Load the files specified in the system property UimaExternalOverrides
    *
-   * @throws ResourceConfigurationException 
+   * @throws ResourceConfigurationException wraps IOException
    */
   
   public void loadSystemDefaults() throws ResourceConfigurationException {
@@ -162,7 +162,7 @@ public class Settings_impl implements Se
    * 
    * @param name - name to look up
    * @return     - value of property
-   * @throws ResourceConfigurationException
+   * @throws ResourceConfigurationException if override variable references undefined variable
    */
   public String lookUp(String name) throws ResourceConfigurationException {
     String value;
@@ -199,7 +199,7 @@ public class Settings_impl implements Se
   
   /*
    * Create a string representing an array from one or more logical lines
-   * Assert: line length > 0
+   * Assert: line length &gt; 0
    */
   private String getArray(String line) throws IOException {
     int iend = line.indexOf(']');
@@ -274,7 +274,7 @@ public class Settings_impl implements Se
 
   /*
    * Check if a character in the string is escaped, i.e. preceded by an odd number of '\'s
-   * Correctly returns false if ichar <= 0
+   * Correctly returns false if ichar &le; 0
    */
   private boolean isEscaped(String line, int ichar) {
     int i = ichar - 1;

Modified: uima/uimaj/trunk/uimaj-core/src/test/java/aa/AbstractType.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/test/java/aa/AbstractType.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/test/java/aa/AbstractType.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/test/java/aa/AbstractType.java Mon Jan  6 20:15:45 2014
@@ -55,7 +55,7 @@ public class AbstractType extends TOP {
   protected AbstractType() {
   }
 
-  /*
+  /**
    * Internal - constructor used by generator
    * 
    * @generated
@@ -82,7 +82,7 @@ public class AbstractType extends TOP {
   // *--------------*
   // * Feature: abstractInt
 
-  /*
+  /**
    * getter for abstractInt - gets
    * 
    * @generated
@@ -94,7 +94,7 @@ public class AbstractType extends TOP {
             ((AbstractType_Type) jcasType).casFeatCode_abstractInt);
   }
 
-  /*
+  /**
    * setter for abstractInt - sets
    * 
    * @generated

Modified: uima/uimaj/trunk/uimaj-core/src/test/java/aa/ConcreteType.java
URL: http://svn.apache.org/viewvc/uima/uimaj/trunk/uimaj-core/src/test/java/aa/ConcreteType.java?rev=1556016&r1=1556015&r2=1556016&view=diff
==============================================================================
--- uima/uimaj/trunk/uimaj-core/src/test/java/aa/ConcreteType.java (original)
+++ uima/uimaj/trunk/uimaj-core/src/test/java/aa/ConcreteType.java Mon Jan  6 20:15:45 2014
@@ -54,7 +54,7 @@ public class ConcreteType extends Abstra
   protected ConcreteType() {
   }
 
-  /*
+  /**
    * Internal - constructor used by generator
    * 
    * @generated
@@ -81,7 +81,7 @@ public class ConcreteType extends Abstra
   // *--------------*
   // * Feature: concreteString
 
-  /*
+  /**
    * getter for concreteString - gets
    * 
    * @generated
@@ -94,7 +94,7 @@ public class ConcreteType extends Abstra
             ((ConcreteType_Type) jcasType).casFeatCode_concreteString);
   }
 
-  /*
+  /**
    * setter for concreteString - sets
    * 
    * @generated