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Posted to builds@beam.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2020/06/28 06:02:53 UTC
Build failed in Jenkins: beam_PostCommit_Python_MongoDBIO_IT #3099
See <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/3099/display/redirect>
Changes:
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[...truncated 22.55 KB...]
root: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python3.5/lib2to3/PatternGrammar.txt
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_artifact_api_pb2.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_artifact_api_pb2_grpc.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_expansion_api_pb2.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_expansion_api_pb2_grpc.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_fn_api_pb2.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_fn_api_pb2_grpc.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_interactive_api_pb2.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_job_api_pb2.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_job_api_pb2_grpc.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_provision_api_pb2.py>
RefactoringTool: No changes to <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_provision_api_pb2_grpc.py>
RefactoringTool: Refactored <https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2.py>
Traceback (most recent call last):
File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/bin/futurize",> line 8, in <module>
sys.exit(main())
File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages/libfuturize/main.py",> line 313, in main
options.processes)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 706, in refactor
items, write, doctests_only)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 299, in refactor
self.refactor_dir(dir_or_file, write, doctests_only)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 319, in refactor_dir
self.refactor_file(fullname, write, doctests_only)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 747, in refactor_file
*args, **kwargs)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 358, in refactor_file
write=write, encoding=encoding)
File "/usr/lib/python3.5/lib2to3/refactor.py", line 524, in processed_file
self.write_file(new_text, filename, old_text, encoding)
File "/usr/lib/python3.5/lib2to3/main.py", line 103, in write_file
shutil.copymode(backup, filename)
File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/shutil.py",> line 137, in copymode
st = stat_func(src)
FileNotFoundError: [Errno 2] No such file or directory: '<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2.py.bak'>
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/setup.py",> line 329, in <module>
'mypy': generate_protos_first(mypy),
File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages/setuptools/__init__.py",> line 161, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.5/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/setup.py",> line 252, in run
gen_protos.generate_proto_files()
File "<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/gen_protos.py",> line 343, in generate_proto_files
'Error applying futurize to generated protobuf python files.')
RuntimeError: Error applying futurize to generated protobuf python files.
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
> Task :sdks:python:test-suites:direct:py2:mongodbioIT
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Processing /home/jenkins/.cache/pip/wheels/81/91/41/3272543c0b9c61da9c525f24ee35bae6fe8f60d4858c66805d/PyVCF-0.6.8-cp27-none-any.whl
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Collecting pyarrow<0.18.0,>=0.15.1
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Processing /home/jenkins/.cache/pip/wheels/d5/c6/06/f237242ae0d6742cda23895f8741980762b0c1fb5a7f70bbea/nose_xunitmp-0.4.1-py2-none-any.whl
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Processing /home/jenkins/.cache/pip/wheels/f5/8c/e2/f0cea19d340270166bbfd4a2e9d8b8c132e26ef7e1376a0890/PyHamcrest-1.10.1-py2-none-any.whl
Processing /home/jenkins/.cache/pip/wheels/d1/d5/a0/3c27cdc8b0209c5fc1385afeee936cf8a71e13d885388b4be2/PyYAML-5.3.1-cp27-cp27mu-linux_x86_64.whl
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Processing /home/jenkins/.cache/pip/wheels/9b/04/dd/7daf4150b6d9b12949298737de9431a324d4b797ffd63f526e/docopt-0.6.2-py2.py3-none-any.whl
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Installing collected packages: crcmod, dill, pytz, fastavro, docopt, certifi, idna, chardet, urllib3, requests, hdfs, httplib2, pbr, funcsigs, mock, numpy, pymongo, pyasn1, rsa, pyasn1-modules, oauth2client, pyparsing, pydot, python-dateutil, typing-extensions, avro, pyvcf, pyarrow, freezegun, nose, nose-xunitmp, parameterized, pyhamcrest, pyyaml, requests-mock, monotonic, tenacity, atomicwrites, packaging, attrs, backports.functools-lru-cache, wcwidth, more-itertools, pytest, pytest-forked, apipkg, execnet, pytest-xdist, pytest-timeout, pandas, apache-beam
Running setup.py develop for apache-beam
Successfully installed apache-beam apipkg-1.5 atomicwrites-1.4.0 attrs-19.3.0 avro-1.9.2 backports.functools-lru-cache-1.6.1 certifi-2020.6.20 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.23.5 freezegun-0.3.15 funcsigs-1.0.2 hdfs-2.5.8 httplib2-0.17.4 idna-2.10 mock-2.0.0 monotonic-1.5 more-itertools-5.0.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.16.6 oauth2client-3.0.0 packaging-20.4 pandas-0.24.2 parameterized-0.7.4 pbr-5.4.5 pyarrow-0.16.0 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydot-1.4.1 pyhamcrest-1.10.1 pymongo-3.10.1 pyparsing-2.4.7 pytest-4.6.11 pytest-forked-1.2.0 pytest-timeout-1.4.1 pytest-xdist-1.32.0 python-dateutil-2.8.1 pytz-2020.1 pyvcf-0.6.8 pyyaml-5.3.1 requests-2.24.0 requests-mock-1.8.0 rsa-4.0 tenacity-5.1.5 typing-extensions-3.7.4.2 urllib3-1.25.9 wcwidth-0.2.5
<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/__init__.py>:82: UserWarning: You are using Apache Beam with Python 2. New releases of Apache Beam will soon support Python 3 only.
'You are using Apache Beam with Python 2. '
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Writing 100000 documents to mongodb
<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:82: FutureWarning: WriteToMongoDB is experimental.
known_args.batch_size))
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INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7f078c935848> ====================
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INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7f078c935d70> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7f078c935e60> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7f078ca26910> for environment ref_Environment_default_environment_1 (beam:env:embedded_python:v1, '')
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_AppliedPTransform_Create/Impulse_3)+((ref_AppliedPTransform_Create/FlatMap(<lambda at core.py:2623>)_4)+((ref_AppliedPTransform_Create/Map(decode)_6)+((ref_AppliedPTransform_Create documents_7)+((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13)+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write)))))))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_15)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_16)))+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_17)
INFO:__main__:Writing 100000 documents to mongodb finished in 41.397 seconds
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1593324104
<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:101: FutureWarning: ReadFromMongoDB is experimental.
| 'Combine' >> beam.CombineGlobally(sum))
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function annotate_downstream_side_inputs at 0x7f078c935758> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function fix_side_input_pcoll_coders at 0x7f078c935848> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function lift_combiners at 0x7f078c9358c0> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_sdf at 0x7f078c935938> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function expand_gbk at 0x7f078c9359b0> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sink_flattens at 0x7f078c935aa0> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function greedily_fuse at 0x7f078c935b18> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function read_to_impulse at 0x7f078c935b90> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function impulse_to_input at 0x7f078c935c08> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function sort_stages at 0x7f078c935de8> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function setup_timer_mapping at 0x7f078c935d70> ====================
INFO:apache_beam.runners.portability.fn_api_runner.translations:==================== <function populate_data_channel_coders at 0x7f078c935e60> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner.worker_handlers:Created Worker handler <apache_beam.runners.portability.fn_api_runner.worker_handlers.EmbeddedWorkerHandler object at 0x7f076204da10> for environment ref_Environment_default_environment_1 (beam:env:embedded_python:v1, '')
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_AppliedPTransform_assert_that/Create/Impulse_23)+((ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda at core.py:2623>)_24)+((ref_AppliedPTransform_assert_that/Create/Map(decode)_26)+((ref_AppliedPTransform_assert_that/Group/pair_with_0_30)+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0)))))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction))+((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction)+(ref_PCollection_PCollection_1_split/Write))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (ref_PCollection_PCollection_1_split/Read)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process)+((ref_AppliedPTransform_Map_7)+((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine))))+(Combine/CombinePerKey/Group/Write))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((Combine/CombinePerKey/Group/Read)+(Combine/CombinePerKey/Merge))+((Combine/CombinePerKey/ExtractOutputs)+((ref_AppliedPTransform_Combine/UnKey_14)+(ref_PCollection_PCollection_7/Write)))
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (((ref_AppliedPTransform_Combine/DoOnce/Impulse_16)+((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda at core.py:2623>)_17)+(ref_AppliedPTransform_Combine/DoOnce/Map(decode)_19)))+((ref_AppliedPTransform_Combine/InjectDefault_20)+((ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_27)+((ref_AppliedPTransform_assert_that/ToVoidKey_28)+((ref_AppliedPTransform_assert_that/Group/pair_with_1_31)+(assert_that/Group/Flatten/Transcode/1))))))+(assert_that/Group/Flatten/Write/1)
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write)
INFO:apache_beam.runners.portability.fn_api_runner.fn_runner:Running ((assert_that/Group/GroupByKey/Read)+(ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_34))+((ref_AppliedPTransform_assert_that/Unkey_35)+(ref_AppliedPTransform_assert_that/Match_36))
INFO:__main__:Read 100000 documents from mongodb finished in 7.370 seconds
mongoioit27118
mongoioit27118
FAILURE: Build failed with an exception.
* Where:
Build file '<https://ci-beam.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/py35/build.gradle'> line: 46
* What went wrong:
Execution failed for task ':sdks:python:test-suites:direct:py35:mongodbioIT'.
> Process 'command 'sh'' finished with non-zero exit value 1
* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
* Get more help at https://help.gradle.org
Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings
BUILD FAILED in 2m 31s
4 actionable tasks: 4 executed
Publishing build scan...
https://gradle.com/s/wf73gmjdfgdes
Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure
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