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Posted to commits@uima.apache.org by re...@apache.org on 2021/12/13 14:16:04 UTC
[uima-uimaj] branch bugfix/UIMA-6400-UimaContextHolder-threadlocal-can-leak updated (8ede6d4 -> a9afc49)
This is an automated email from the ASF dual-hosted git repository.
rec pushed a change to branch bugfix/UIMA-6400-UimaContextHolder-threadlocal-can-leak
in repository https://gitbox.apache.org/repos/asf/uima-uimaj.git.
from 8ede6d4 [UIMA-6400] UimaContextHolder threadlocal can leak
add 8acad25 [NO-JIRA] Set version to 3.3.0-SNAPSHOT
add 9a4b101 Merge pull request #124 from apache/NO-JIRA-Set-version
add 6a8cb85 Corrected a spelling error
add 76886ce Merge pull request #125 from sark245/main
add aed14a2 Merge branch 'main' into bugfix/UIMA-6367-JCas-cover-annotation-created-in-PEAR-context-replaced-during-index-operations
add 5d0e20a Merge pull request #127 from apache/bugfix/UIMA-6367-JCas-cover-annotation-created-in-PEAR-context-replaced-during-index-operations
add cc7efef [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 062b392 [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 9ec0965 [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 36ca99e [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 4586a1c [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 0fb68a3 [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 9f7e76f [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 07fd52d Merge pull request #128 from apache/refactoring/UIMA-6372-Upgrade-from-JUnit-3-to-JUnit-4-to-JUnit-5
add 0bbe2e1 [UIMA-6373] Format UIMA Core Java SDK codebase
add 9144c9f [UIMA-6373] Format UIMA Core Java SDK codebase
add e68d945 [UIMA-6373] Format UIMA Core Java SDK codebase
add 1173e4b [UIMA-6373] Format UIMA Core Java SDK codebase
add 246378b [UIMA-6373] Format UIMA Core Java SDK codebase
add 0e946c8 [UIMA-6373] Format UIMA Core Java SDK codebase
add 8c1ea2c [UIMA-6373] Format UIMA Core Java SDK codebase
add 9578536 [UIMA-6373] Format UIMA Core Java SDK codebase
add 496df1c [UIMA-6373] Format UIMA Core Java SDK codebase
add a6e4208 [UIMA-6373] Format UIMA Core Java SDK codebase
add 3714295 [UIMA-6373] Format UIMA Core Java SDK codebase
add db5e67f [UIMA-6373] Format UIMA Core Java SDK codebase
add e1d5b6b [UIMA-6373] Format UIMA Core Java SDK codebase
add 3da17c1 [UIMA-6373] Format UIMA Core Java SDK codebase
add 1688f0a [UIMA-6373] Format UIMA Core Java SDK codebase
add 2d9b55e [UIMA-6373] Format UIMA Core Java SDK codebase
add 1224bba [UIMA-6373] Format UIMA Core Java SDK codebase
add c1fa12f [UIMA-6373] Format UIMA Core Java SDK codebase
add 7c0998e [UIMA-6373] Format UIMA Core Java SDK codebase
add b6fb4fb [UIMA-6373] Format UIMA Core Java SDK codebase
add 2581125 [UIMA-6373] Format UIMA Core Java SDK codebase
add 149824f [UIMA-6373] Format UIMA Core Java SDK codebase
add 69caee3 [UIMA-6373] Format UIMA Core Java SDK codebase
add ccfbb69 [UIMA-6373] Format UIMA Core Java SDK codebase
add 71d7756 [UIMA-6373] Format UIMA Core Java SDK codebase
add 42ba85b [UIMA-6373] Format UIMA Core Java SDK codebase
add 26114e0 Merge pull request #129 from apache/refactoring/UIMA-6373-Format-UIMA-Core-Java-SDK-codebase
add 7e340ba [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add d3048a6 [UIMA-6373] Format UIMA Core Java SDK codebase
add 41ab021 [UIMA-6373] Format UIMA Core Java SDK codebase
add 2835dce [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 8b4d620 [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 98f323d [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 58f220a Merge pull request #130 from apache/refactoring/UIMA-6372-Upgrade-from-JUnit-3-to-JUnit-4-to-JUnit-5
add d60316a Merge branch 'main' into bugfix/UIMA-6377-Spurious-multipleReferencesAllowed-warning-when-serializing-empty-arrays
add 665a3de Merge pull request #133 from apache/bugfix/UIMA-6377-Spurious-multipleReferencesAllowed-warning-when-serializing-empty-arrays
add 4279007 [UIMA-6378] Java SDK does not build on Java 16
add dff84ec [UIMA-6374] Create CAS (de)serialization test suite
add 08fbf54 [UIMA-6374] Create CAS (de)serialization test suite
add fe42a5e [UIMA-6374] Create CAS (de)serialization test suite
add e097dcc [UIMA-6374] Create CAS (de)serialization test suite
add 8853726 [UIMA-6374] Create CAS (de)serialization test suite
add ad524fa [UIMA-6374] Create CAS (de)serialization test suite
add a62109a [UIMA-6374] Create CAS (de)serialization test suite
add dd0366e [UIMA-6374] Create CAS (de)serialization test suite
add 1fed2ce [UIMA-6374] Create CAS (de)serialization test suite
add 150f237 Merge pull request #131 from apache/feature/UIMA-6374-Create-CAS-de-serialization-test-suite
add d2e7253 Merge branch 'main' into bugfix/UIMA-6378-Java-SDK-does-not-build-on-Java-16
add d2400ff [UIMA-6373] Format UIMA Core Java SDK codebase
add 4b93305 Merge pull request #135 from apache/refactoring/UIMA-6373-Format-UIMA-Core-Java-SDK-codebase
add 99acf66 Merge branch 'main' into bugfix/UIMA-6378-Java-SDK-does-not-build-on-Java-16
add d60278a Merge pull request #134 from apache/bugfix/UIMA-6378-Java-SDK-does-not-build-on-Java-16
add 8320f36 [UIMA-6374] Create CAS (de)serialization test suite
add 5af06cd [UIMA-6374] Create CAS (de)serialization test suite
add 9a78344 Merge pull request #136 from apache/feature/UIMA-6374-Create-CAS-de--serialization-test-suite
add bdd2d69 [UIMA-6374] Create CAS (de)serialization test suite
add 0bff3cc [UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
add 9231702 Merge pull request #138 from apache/refactoring/UIMA-6372-Upgrade-from-JUnit-3-to-JUnit-4-to-JUnit-5
add 846fc1a Merge branch 'main' into origin/feature/UIMA-6374-Create-CAS-de--serialization-test-suite
add 1e7f3ea Merge pull request #139 from apache/origin/feature/UIMA-6374-Create-CAS-de--serialization-test-suite
add db276e3 [UIMA-6374] Create CAS (de)serialization test suite
add 273df59 Merge pull request #140 from apache/origin/feature/UIMA-6374-Create-CAS-de--serialization-test-suite
add 562d772 [UIMA-6374] Create CAS (de)serialization test suite
add 9774e6a [UIMA-6374] Create CAS (de)serialization test suite
add 2ceaa38 Merge pull request #141 from apache/feature/UIMA-6374-Create-CAS-de-serialization-test-suite
add 85ced9a [UIMA-6374] Create CAS (de)serialization test suite
add 57947c9 Merge pull request #142 from apache/feature/UIMA-6374-Create-CAS-de-serialization-test-suite
add 3ef19cc [UIMA-6374] Create CAS (de)serialization test suite
add 679e4d9 [UIMA-6374] Create CAS (de)serialization test suite
add 04b065b [UIMA-6374] Create CAS (de)serialization test suite
add 20f1496 [UIMA-6374] Create CAS (de)serialization test suite
add 35203fe Merge pull request #147 from apache/maintenance/3.2.x
add f93d482 Merge branch 'main' into feature/UIMA-6374-Create-CAS-de-serialization-test-suite
add 6a80640 Merge pull request #143 from apache/feature/UIMA-6374-Create-CAS-de-serialization-test-suite
add 3b5d609 Merge branch 'main' into bugfix/UIMA-6386-Wrong-session-set-on-ConfigurationManager-in-aggregates
add 889824f Merge pull request #148 from apache/bugfix/UIMA-6386-Wrong-session-set-on-ConfigurationManager-in-aggregates
add 066f990 Merge branch 'main' into bugfix/UIMA-6389-Logger_common_impl-swallows-exception
add 2e6aeb0 Merge pull request #151 from apache/bugfix/UIMA-6389-Logger_common_impl-swallows-exception
add d1ff8b3 [UIMA-6390] NPE when trying to access config names of fresh context
add 11f2861 Merge branch 'bugfix/UIMA-6390-NPE-when-trying-to-access-config-names-of-fresh-context' into bugfix/UIMA-6390-NPE-when-trying-to-access-config-names-of-fresh-context-main
add 2939f15 Merge branch 'bugfix/UIMA-6390-NPE-when-trying-to-access-config-names-of-fresh-context' into bugfix/UIMA-6390-NPE-when-trying-to-access-config-names-of-fresh-context-main
add 84b8dcf Merge pull request #153 from apache/bugfix/UIMA-6390-NPE-when-trying-to-access-config-names-of-fresh-context-main
add 9d5fb49 Merge branch 'main' into bugfix/UIMA-6393-Circular-imports-break-resource-manager-cache_pk
add 6859eec Merge pull request #155 from apache/bugfix/UIMA-6393-Circular-imports-break-resource-manager-cache_pk
add 9aac775 Fixed v3 update site url
add 2e58b90 Merge pull request #156 from mych4nge/v3-update-site-url-fix
add 783bbfc [UIMA-6374] Create CAS (de)serialization test suite
add 6fa03e8 Merge pull request #157 from apache/feature/UIMA-6374-Create-CAS-deserialization-test-suite
add dfb081c [UIMA-6397] Remove unnecessary code from Class_TCCL.java
add 2e80688 Merge branch 'main' into bugfix/UIMA-6398-Classloader-paradoxon-and-memory-leak-in-UIMA-loggers
add c33c8dd [UIMA-6398] Classloader paradoxon and memory leak in UIMA loggers
add 89462e1 [UIMA-6374] Create CAS (de)serialization test suite (#160)
add 348cbfe Merge branch 'main' into bugfix/UIMA-6398-Classloader-paradoxon-and-memory-leak-in-UIMA-loggers
add 5cf965f Merge pull request #159 from apache/bugfix/UIMA-6398-Classloader-paradoxon-and-memory-leak-in-UIMA-loggers
new a9afc49 Merge branch 'main' into bugfix/UIMA-6400-UimaContextHolder-threadlocal-can-leak
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
PearPackagingMavenPlugin/.gitignore | 2 +
PearPackagingMavenPlugin/pom.xml | 2 +-
.../apache/uima/pear/tools/PearPackagingMojo.java | 7 +-
aggregate-uimaj-docbooks/pom.xml | 2 +-
aggregate-uimaj-eclipse-plugins/pom.xml | 2 +-
aggregate-uimaj/pom.xml | 2 +-
installEclipseSettings.sh | 71 +
jVinci/.gitignore | 2 +
jVinci/pom.xml | 2 +-
.../org/apache/vinci/transport/Attributes.java | 4 +-
.../org/apache/vinci/transport/BaseServer.java | 3 +-
.../apache/vinci/transport/BaseServerRunnable.java | 1 +
.../org/apache/vinci/transport/ErrorFrame.java | 1 -
.../java/org/apache/vinci/transport/Frame.java | 3 +
.../java/org/apache/vinci/transport/FrameLeaf.java | 1 +
.../apache/vinci/transport/LeafCastException.java | 1 -
.../vinci/transport/SimpleTransportable.java | 2 +
.../org/apache/vinci/transport/VinciClient.java | 3 +-
.../org/apache/vinci/transport/VinciFrame.java | 7 +
.../vinci/transport/VinciServableAdapter.java | 3 +
.../org/apache/vinci/transport/VinciServer.java | 2 +
.../vinci/transport/VinciServerRunnable.java | 1 +
.../apache/vinci/transport/XTalkTransporter.java | 2 +
.../vinci/transport/context/VinciContext.java | 1 +
.../apache/vinci/transport/document/AFrame.java | 5 +
.../vinci/transport/document/AFrameLeaf.java | 2 +
.../vinci/transport/document/XMLToVinci.java | 18 +-
.../vinci/transport/document/XMLToXTalk.java | 3 +
.../vinci/transport/document/XTalkToSAX.java | 3 +-
.../transport/util/Base64FormatException.java | 1 -
.../vinci/transport/vns/client/ResolveResult.java | 4 +
.../vinci/transport/vns/client/ServeonResult.java | 2 +
.../vinci/transport/vns/service/Service.java | 4 +
.../vinci/transport/vns/service/ServiceAlias.java | 1 +
.../vinci/transport/vns/service/ServiceInfo.java | 1 +
.../transport/vns/service/ServiceInterface.java | 2 +-
.../transport/vns/service/ServiceRegistry.java | 4 +-
.../apache/vinci/transport/vns/service/VNS.java | 7 +
jcasgen-maven-plugin/.gitignore | 2 +
jcasgen-maven-plugin/pom.xml | 13 +-
.../uima/tools/jcasgen/maven/JCasGenM2ETest.java | 12 +-
.../uima/tools/jcasgen/maven/JCasGenMojo.java | 6 +
.../uima/tools/jcasgen/maven/JCasGenMojoTest.java | 22 +-
.../src/test/resources/invalidFeature/pom.xml | 88 +-
pom.xml | 5 +-
src/main/eclipse/org.eclipse.jdt.core.prefs | 398 +
src/main/eclipse/org.eclipse.jdt.ui.prefs | 121 +
uima-doc-v3-users-guide/pom.xml | 2 +-
uima-docbook-overview-and-setup/pom.xml | 2 +-
.../src/docbook/eclipse_setup.xml | 2 +-
uima-docbook-references/pom.xml | 2 +-
uima-docbook-tools/pom.xml | 2 +-
uima-docbook-tutorials-and-users-guides/pom.xml | 2 +-
uimaj-adapter-soap/.gitignore | 2 +
uimaj-adapter-soap/pom.xml | 2 +-
uimaj-adapter-vinci/.gitignore | 2 +
uimaj-adapter-vinci/pom.xml | 13 +-
.../uima/adapter/vinci/CASTransportable.java | 19 +-
.../vinci/VinciAnalysisEngineServiceAdapter.java | 1 +
.../VinciBinaryAnalysisEngineServiceStub.java | 5 +
.../VinciBinaryAnalysisEngineService_impl.java | 3 +
.../apache/uima/adapter/vinci/util/Descriptor.java | 1 +
.../adapter/vinci/util/SaxVinciFrameBuilder.java | 7 +-
.../vinci/util/UimaSaxVinciFrameBuilder.java | 1 +
.../uima/adapter/vinci/util/VinciSaxParser.java | 7 +-
.../VinciAnalysisEngineServiceAdapterTest.java | 78 +-
uimaj-bootstrap/.gitignore | 2 +
uimaj-bootstrap/pom.xml | 2 +-
.../org/apache/uima/bootstrap/UimaBootstrap.java | 417 +-
uimaj-component-test-util/.gitignore | 2 +
uimaj-component-test-util/pom.xml | 11 +-
.../AnnotatorPerformanceTester.java | 4 +-
.../uima/test/junit_extension/AnnotatorTester.java | 77 +-
.../junit_extension/PerformanceTestResult.java | 36 +-
uimaj-core/.gitignore | 2 +
uimaj-core/pom.xml | 249 +-
.../org/apache/uima/CompositeResourceFactory.java | 6 +-
.../src/main/java/org/apache/uima/Constants.java | 15 +-
.../main/java/org/apache/uima/I18nExceptionI.java | 200 +-
.../apache/uima/InternationalizedException.java | 381 +-
.../uima/InternationalizedRuntimeException.java | 68 +-
.../main/java/org/apache/uima/List_of_ints.java | 864 +-
.../main/java/org/apache/uima/ResourceFactory.java | 37 +-
.../org/apache/uima/ResourceSpecifierFactory.java | 141 +-
.../main/java/org/apache/uima/UIMAException.java | 97 +-
.../main/java/org/apache/uima/UIMAFramework.java | 511 +-
.../java/org/apache/uima/UIMARuntimeException.java | 144 +-
.../apache/uima/UIMA_IllegalArgumentException.java | 17 +-
.../apache/uima/UIMA_IllegalStateException.java | 40 +-
.../uima/UIMA_UnsupportedOperationException.java | 20 +-
.../src/main/java/org/apache/uima/UimaContext.java | 241 +-
.../java/org/apache/uima/UimaContextAdmin.java | 71 +-
.../java/org/apache/uima/UimaSerializable.java | 99 +-
.../java/org/apache/uima/UimaSerializableFSs.java | 75 +-
.../uima/analysis_component/AnalysisComponent.java | 24 +-
.../AnalysisComponent_ImplBase.java | 27 +-
.../analysis_component/Annotator_ImplBase.java | 3 +
.../analysis_component/CasAnnotator_ImplBase.java | 17 +-
.../analysis_component/CasMultiplier_ImplBase.java | 24 +-
.../analysis_component/JCasAnnotator_ImplBase.java | 9 +-
.../JCasMultiplier_ImplBase.java | 16 +-
.../uima/analysis_engine/AnalysisEngine.java | 286 +-
.../analysis_engine/AnalysisEngineDescription.java | 106 +-
.../analysis_engine/AnalysisEngineManagement.java | 26 +-
.../AnalysisEngineProcessException.java | 29 +-
.../analysis_engine/AnalysisEngineServiceStub.java | 20 +-
.../uima/analysis_engine/AnalysisProcessData.java | 12 +-
.../apache/uima/analysis_engine/CasIterator.java | 11 +-
.../apache/uima/analysis_engine/JCasIterator.java | 11 +-
.../ResultNotSupportedException.java | 20 +-
.../uima/analysis_engine/ResultSpecification.java | 302 +-
.../uima/analysis_engine/TaeDescription.java | 1 -
.../uima/analysis_engine/TextAnalysisEngine.java | 1 -
.../apache/uima/analysis_engine/TypeOrFeature.java | 15 +-
.../annotator/AnnotatorConfigurationException.java | 27 +-
.../annotator/AnnotatorContext.java | 186 +-
.../annotator/AnnotatorContextException.java | 20 +-
.../AnnotatorInitializationException.java | 23 +-
.../annotator/AnnotatorProcessException.java | 18 +-
.../annotator/Annotator_ImplBase.java | 19 +-
.../analysis_engine/annotator/BaseAnnotator.java | 17 +-
.../annotator/GenericAnnotator.java | 4 +-
.../annotator/GenericAnnotator_ImplBase.java | 6 +-
.../analysis_engine/annotator/JTextAnnotator.java | 4 +-
.../annotator/JTextAnnotator_ImplBase.java | 2 +-
.../analysis_engine/annotator/TextAnnotator.java | 4 +-
.../org/apache/uima/analysis_engine/asb/ASB.java | 48 +-
.../uima/analysis_engine/asb/impl/ASB_impl.java | 205 +-
.../analysis_engine/asb/impl/FlowContainer.java | 34 +-
.../asb/impl/FlowControllerContainer.java | 110 +-
.../impl/AggregateAnalysisEngine_impl.java | 109 +-
.../impl/AnalysisEngineDescription_impl.java | 273 +-
.../impl/AnalysisEngineImplBase.java | 255 +-
.../impl/AnalysisEngineManagementImpl.java | 101 +-
.../impl/AnalysisEngineManagementImplMBean.java | 12 +-
.../impl/AnalysisProcessData_impl.java | 20 +-
.../impl/AnnotatorContext_impl.java | 49 +-
.../analysis_engine/impl/EmptyCasIterator.java | 3 +
.../analysis_engine/impl/JCasIteratorWrapper.java | 3 +
.../impl/MultiprocessingAnalysisEngine_impl.java | 160 +-
.../impl/PearAnalysisEngineWrapper.java | 655 +-
.../impl/PrimitiveAnalysisEngine_impl.java | 304 +-
.../impl/ResultSpecification_impl.java | 305 +-
.../apache/uima/analysis_engine/impl/RsFeat.java | 106 +-
.../apache/uima/analysis_engine/impl/RsFeats.java | 265 +-
.../uima/analysis_engine/impl/RsFullFeatNames.java | 122 +-
.../apache/uima/analysis_engine/impl/RsLang.java | 115 +-
.../apache/uima/analysis_engine/impl/RsLangs.java | 728 +-
.../apache/uima/analysis_engine/impl/RsType.java | 294 +-
.../uima/analysis_engine/impl/RsTypesMap.java | 553 +-
.../analysis_engine/impl/TaeDescription_impl.java | 4 +-
.../analysis_engine/impl/TypeOrFeature_impl.java | 36 +-
.../impl/UimacppAnalysisEngineImpl.java | 126 +-
.../AnalysisComponentAdapterFactory.java | 7 +-
.../impl/compatibility/AnnotatorAdapter.java | 41 +-
.../impl/compatibility/CasConsumerAdapter.java | 21 +-
.../compatibility/CollectionReaderAdapter.java | 23 +-
.../metadata/AnalysisEngineMetaData.java | 26 +-
.../metadata/CapabilityLanguageFlow.java | 13 +-
.../uima/analysis_engine/metadata/FixedFlow.java | 20 +-
.../analysis_engine/metadata/FlowConstraints.java | 10 +-
.../metadata/FlowControllerDeclaration.java | 32 +-
.../uima/analysis_engine/metadata/SofaMapping.java | 18 +-
.../metadata/impl/AnalysisEngineMetaData_impl.java | 55 +-
.../metadata/impl/CapabilityLanguageFlow_impl.java | 19 +-
.../metadata/impl/FixedFlow_impl.java | 5 +
.../impl/FlowControllerDeclaration_impl.java | 32 +-
.../metadata/impl/SofaMapping_impl.java | 15 +-
.../service/impl/AnalysisEngineServiceAdapter.java | 20 +-
.../service/impl/AnalysisEngineService_impl.java | 25 +-
.../service/impl/ServiceDataCargo.java | 33 +-
.../main/java/org/apache/uima/cas/AbstractCas.java | 3 +-
.../org/apache/uima/cas/AbstractCas_ImplBase.java | 5 +-
.../java/org/apache/uima/cas/AnnotationBaseFS.java | 4 +-
.../src/main/java/org/apache/uima/cas/ArrayFS.java | 42 +-
.../java/org/apache/uima/cas/BooleanArrayFS.java | 14 +-
.../main/java/org/apache/uima/cas/ByteArrayFS.java | 13 +-
.../src/main/java/org/apache/uima/cas/CAS.java | 633 +-
.../java/org/apache/uima/cas/CASException.java | 23 +-
.../org/apache/uima/cas/CASRuntimeException.java | 459 +-
.../main/java/org/apache/uima/cas/CasOwner.java | 5 +-
.../java/org/apache/uima/cas/CommonArrayFS.java | 52 +-
.../org/apache/uima/cas/ConstraintFactory.java | 7 +-
.../java/org/apache/uima/cas/DoubleArrayFS.java | 8 +-
.../org/apache/uima/cas/FSBooleanConstraint.java | 101 +-
.../java/org/apache/uima/cas/FSComparators.java | 66 +-
.../src/main/java/org/apache/uima/cas/FSIndex.java | 229 +-
.../org/apache/uima/cas/FSIndexRepository.java | 176 +-
.../main/java/org/apache/uima/cas/FSIterator.java | 203 +-
.../src/main/java/org/apache/uima/cas/Feature.java | 28 +-
.../main/java/org/apache/uima/cas/FeaturePath.java | 473 +-
.../java/org/apache/uima/cas/FeatureStructure.java | 81 +-
.../java/org/apache/uima/cas/FeatureValuePath.java | 72 +-
.../java/org/apache/uima/cas/FloatArrayFS.java | 12 +-
.../main/java/org/apache/uima/cas/IntArrayFS.java | 14 +-
.../main/java/org/apache/uima/cas/LongArrayFS.java | 15 +-
.../src/main/java/org/apache/uima/cas/Marker.java | 53 +-
.../java/org/apache/uima/cas/ParsingException.java | 5 +-
.../main/java/org/apache/uima/cas/SelectFSs.java | 1835 +++--
.../java/org/apache/uima/cas/SerialFormat.java | 53 +-
.../java/org/apache/uima/cas/ShortArrayFS.java | 13 +-
.../src/main/java/org/apache/uima/cas/SofaFS.java | 45 +-
.../src/main/java/org/apache/uima/cas/SofaID.java | 16 +-
.../java/org/apache/uima/cas/StringArrayFS.java | 73 +-
.../src/main/java/org/apache/uima/cas/Type.java | 25 +-
.../main/java/org/apache/uima/cas/TypeClass.java | 51 +-
.../java/org/apache/uima/cas/TypeNameSpace.java | 2 -
.../main/java/org/apache/uima/cas/TypeSystem.java | 40 +-
.../apache/uima/cas/admin/CASAdminException.java | 35 +-
.../java/org/apache/uima/cas/admin/CASFactory.java | 15 +-
.../java/org/apache/uima/cas/admin/CASMgr.java | 17 +-
.../apache/uima/cas/admin/FSIndexComparator.java | 27 +-
.../uima/cas/admin/FSIndexRepositoryMgr.java | 15 +-
.../org/apache/uima/cas/admin/LinearTypeOrder.java | 27 +-
.../uima/cas/admin/LinearTypeOrderBuilder.java | 10 +-
.../org/apache/uima/cas/admin/TypeSystemMgr.java | 114 +-
.../main/java/org/apache/uima/cas/impl/AllFSs.java | 383 +-
.../apache/uima/cas/impl/AllowPreexistingFS.java | 48 +-
.../apache/uima/cas/impl/AnnotationBaseImpl.java | 61 +-
.../org/apache/uima/cas/impl/AnnotationImpl.java | 61 +-
.../uima/cas/impl/AnnotationImplException.java | 12 +-
.../apache/uima/cas/impl/AnnotationTreeImpl.java | 4 +-
.../uima/cas/impl/AnnotationTreeNodeImpl.java | 13 +-
.../org/apache/uima/cas/impl/BinaryCasSerDes.java | 4049 +++++-----
.../org/apache/uima/cas/impl/BinaryCasSerDes4.java | 3150 ++++----
.../org/apache/uima/cas/impl/BinaryCasSerDes6.java | 2943 +++----
.../apache/uima/cas/impl/BooleanArrayFSImpl.java | 62 +-
.../apache/uima/cas/impl/BooleanConstraint.java | 130 +-
.../org/apache/uima/cas/impl/BuiltinTypeKinds.java | 358 +-
.../org/apache/uima/cas/impl/ByteArrayFSImpl.java | 62 +-
.../java/org/apache/uima/cas/impl/ByteHeap.java | 237 +-
.../uima/cas/impl/CASCompleteSerializer.java | 3 +-
.../java/org/apache/uima/cas/impl/CASImpl.java | 3825 ++++-----
.../org/apache/uima/cas/impl/CASMgrSerializer.java | 147 +-
.../org/apache/uima/cas/impl/CASSerializer.java | 756 +-
.../java/org/apache/uima/cas/impl/CasCompare.java | 4471 ++++++-----
.../org/apache/uima/cas/impl/CasSeqAddrMaps.java | 127 +-
.../apache/uima/cas/impl/CasSerializerSupport.java | 2871 +++----
.../java/org/apache/uima/cas/impl/CasState.java | 117 +-
.../apache/uima/cas/impl/CasTypeSystemMapper.java | 143 +-
.../apache/uima/cas/impl/CommonArrayFSImpl.java | 61 +-
.../org/apache/uima/cas/impl/CommonAuxHeap.java | 402 +-
.../org/apache/uima/cas/impl/CommonSerDes.java | 566 +-
.../uima/cas/impl/CommonSerDesSequential.java | 432 +-
.../uima/cas/impl/ConjunctiveConstraint.java | 3 +-
.../uima/cas/impl/ConstraintFactoryImpl.java | 116 +-
.../apache/uima/cas/impl/CopyOnWriteIndexPart.java | 117 +-
.../uima/cas/impl/DebugFSLogicalStructure.java | 29 +-
.../apache/uima/cas/impl/DebugNameValuePair.java | 1 +
.../apache/uima/cas/impl/DeferredIndexUpdates.java | 146 +-
.../uima/cas/impl/DisjunctiveConstraint.java | 3 +-
.../apache/uima/cas/impl/DoubleArrayFSImpl.java | 62 +-
.../apache/uima/cas/impl/EmbeddedConstraint.java | 2 +
.../uima/cas/impl/FSBooleanConstraintImpl.java | 132 +-
.../org/apache/uima/cas/impl/FSClassRegistry.java | 1770 +++--
.../org/apache/uima/cas/impl/FSComparator.java | 5 +-
.../java/org/apache/uima/cas/impl/FSGenerator.java | 73 +-
.../org/apache/uima/cas/impl/FSImplComparator.java | 8 +-
.../uima/cas/impl/FSIndexComparatorImpl.java | 81 +-
.../uima/cas/impl/FSIndexRepositoryImpl.java | 1695 ++--
.../apache/uima/cas/impl/FSIntConstraintImpl.java | 7 +
.../apache/uima/cas/impl/FSIteratorImplBase.java | 223 +-
.../uima/cas/impl/FSStringConstraintImpl.java | 1 -
.../apache/uima/cas/impl/FSTypeConstraintImpl.java | 112 +-
.../org/apache/uima/cas/impl/FSsTobeAddedback.java | 109 +-
.../java/org/apache/uima/cas/impl/FeatureImpl.java | 267 +-
.../uima/cas/impl/FeatureImpl_jcas_only.java | 92 +-
.../org/apache/uima/cas/impl/FeaturePathImpl.java | 443 +-
.../apache/uima/cas/impl/FeatureStructureImpl.java | 12 +-
.../uima/cas/impl/FeatureStructureImplC.java | 1868 +++--
.../apache/uima/cas/impl/FeatureValuePathImpl.java | 2125 ++---
.../org/apache/uima/cas/impl/FilteredIterator.java | 49 +-
.../org/apache/uima/cas/impl/FloatArrayFSImpl.java | 62 +-
.../org/apache/uima/cas/impl/FsGenerator3.java | 64 +-
.../org/apache/uima/cas/impl/FsGeneratorArray.java | 65 +-
.../apache/uima/cas/impl/FsIndex_annotation.java | 316 +-
.../java/org/apache/uima/cas/impl/FsIndex_bag.java | 171 +-
.../org/apache/uima/cas/impl/FsIndex_flat.java | 466 +-
.../org/apache/uima/cas/impl/FsIndex_iicp.java | 1263 +--
.../apache/uima/cas/impl/FsIndex_set_sorted.java | 572 +-
.../apache/uima/cas/impl/FsIndex_singletype.java | 212 +-
.../org/apache/uima/cas/impl/FsIndex_snapshot.java | 344 +-
.../cas/impl/FsIterator_aggregation_common.java | 604 +-
.../apache/uima/cas/impl/FsIterator_backwards.java | 296 +-
.../org/apache/uima/cas/impl/FsIterator_bag.java | 404 +-
.../apache/uima/cas/impl/FsIterator_bag_pear.java | 97 +-
.../apache/uima/cas/impl/FsIterator_limited.java | 457 +-
.../uima/cas/impl/FsIterator_multiple_indexes.java | 414 +-
.../uima/cas/impl/FsIterator_set_sorted2.java | 677 +-
.../uima/cas/impl/FsIterator_set_sorted_pear.java | 99 +-
.../uima/cas/impl/FsIterator_singletype.java | 203 +-
.../uima/cas/impl/FsIterator_subtypes_ordered.java | 1266 +--
.../cas/impl/FsIterator_subtypes_snapshot.java | 557 +-
.../main/java/org/apache/uima/cas/impl/Heap.java | 627 +-
.../main/java/org/apache/uima/cas/impl/Id2FS.java | 704 +-
.../org/apache/uima/cas/impl/IntArrayFSImpl.java | 62 +-
.../org/apache/uima/cas/impl/IntConstraint.java | 2 +
.../uima/cas/impl/LLUnambiguousIteratorImpl.java | 31 +-
.../uima/cas/impl/LinearTypeOrderBuilderImpl.java | 152 +-
.../org/apache/uima/cas/impl/LongArrayFSImpl.java | 62 +-
.../java/org/apache/uima/cas/impl/LongHeap.java | 228 +-
.../java/org/apache/uima/cas/impl/LongSet.java | 155 +-
.../java/org/apache/uima/cas/impl/LowLevelCAS.java | 127 +-
.../apache/uima/cas/impl/LowLevelException.java | 13 +-
.../org/apache/uima/cas/impl/LowLevelIndex.java | 150 +-
.../uima/cas/impl/LowLevelIndexRepository.java | 11 +-
.../org/apache/uima/cas/impl/LowLevelIterator.java | 87 +-
.../uima/cas/impl/LowLevelIterator_empty.java | 176 +-
.../apache/uima/cas/impl/LowLevelTypeSystem.java | 45 +-
.../java/org/apache/uima/cas/impl/MarkerImpl.java | 52 +-
.../apache/uima/cas/impl/MethodHandlesLookup.java | 65 +-
.../apache/uima/cas/impl/OutOfTypeSystemData.java | 27 +-
.../org/apache/uima/cas/impl/PathConstraint.java | 1 -
.../org/apache/uima/cas/impl/SelectFSs_impl.java | 3611 ++++-----
.../org/apache/uima/cas/impl/Serialization.java | 334 +-
.../org/apache/uima/cas/impl/ShortArrayFSImpl.java | 62 +-
.../java/org/apache/uima/cas/impl/ShortHeap.java | 214 +-
.../java/org/apache/uima/cas/impl/SlotKinds.java | 90 +-
.../apache/uima/cas/impl/SlotKindsConstants.java | 139 +-
.../java/org/apache/uima/cas/impl/SofaFSImpl.java | 61 +-
.../apache/uima/cas/impl/StringArrayFSImpl.java | 62 +-
.../org/apache/uima/cas/impl/StringConstraint.java | 2 +
.../java/org/apache/uima/cas/impl/StringHeap.java | 126 +-
.../cas/impl/StringHeapDeserializationHelper.java | 5 +-
.../java/org/apache/uima/cas/impl/StringSet.java | 158 +-
.../java/org/apache/uima/cas/impl/Subiterator.java | 1036 ++-
.../java/org/apache/uima/cas/impl/TypeImpl.java | 984 +--
.../org/apache/uima/cas/impl/TypeImpl_annot.java | 74 +-
.../apache/uima/cas/impl/TypeImpl_annotBase.java | 75 +-
.../org/apache/uima/cas/impl/TypeImpl_array.java | 317 +-
.../org/apache/uima/cas/impl/TypeImpl_list.java | 75 +-
.../apache/uima/cas/impl/TypeImpl_primitive.java | 78 +-
.../org/apache/uima/cas/impl/TypeImpl_string.java | 97 +-
.../uima/cas/impl/TypeImpl_stringSubtype.java | 104 +-
.../apache/uima/cas/impl/TypeNameSpaceImpl.java | 1 +
.../org/apache/uima/cas/impl/TypeSystem2Xml.java | 74 +-
.../apache/uima/cas/impl/TypeSystemConstants.java | 236 +-
.../org/apache/uima/cas/impl/TypeSystemImpl.java | 2783 +++----
.../org/apache/uima/cas/impl/TypeSystemUtils.java | 87 +-
.../org/apache/uima/cas/impl/UimaDecompiler.java | 704 +-
.../org/apache/uima/cas/impl/XCASDeserializer.java | 251 +-
.../apache/uima/cas/impl/XCASParsingException.java | 52 +-
.../org/apache/uima/cas/impl/XCASSerializer.java | 156 +-
.../apache/uima/cas/impl/XMLTypeSystemConsts.java | 16 +-
.../apache/uima/cas/impl/XmiCasDeserializer.java | 1462 ++--
.../org/apache/uima/cas/impl/XmiCasSerializer.java | 1035 +--
.../uima/cas/impl/XmiSerializationSharedData.java | 445 +-
.../org/apache/uima/cas/text/AnnotationFS.java | 69 +-
.../org/apache/uima/cas/text/AnnotationIndex.java | 245 +-
.../apache/uima/cas/text/AnnotationPredicates.java | 15 +-
.../org/apache/uima/cas/text/AnnotationTree.java | 4 -
.../apache/uima/cas/text/AnnotationTreeNode.java | 4 -
.../java/org/apache/uima/cas/text/Language.java | 5 +-
.../java/org/apache/uima/cas_data/CasData.java | 6 +-
.../org/apache/uima/cas_data/FeatureStructure.java | 25 +-
.../org/apache/uima/cas_data/FeatureValue.java | 2 +-
.../org/apache/uima/cas_data/PrimitiveArrayFS.java | 8 +-
.../org/apache/uima/cas_data/PrimitiveValue.java | 7 +-
.../org/apache/uima/cas_data/ReferenceArrayFS.java | 4 +-
.../org/apache/uima/cas_data/ReferenceValue.java | 4 +-
.../org/apache/uima/cas_data/impl/CasDataImpl.java | 17 +-
.../apache/uima/cas_data/impl/CasDataToXCas.java | 16 +-
.../apache/uima/cas_data/impl/CasDataUtils.java | 118 +-
.../uima/cas_data/impl/FeatureStructureImpl.java | 25 +-
.../uima/cas_data/impl/PrimitiveArrayFSImpl.java | 14 +-
.../uima/cas_data/impl/PrimitiveValueImpl.java | 28 +-
.../uima/cas_data/impl/ReferenceArrayFSImpl.java | 11 +-
.../uima/cas_data/impl/ReferenceValueImpl.java | 11 +-
.../cas_data/impl/XCasToCasDataSaxHandler.java | 23 +-
.../org/apache/uima/collection/CasConsumer.java | 7 +-
.../uima/collection/CasConsumerDescription.java | 6 +-
.../uima/collection/CasConsumer_ImplBase.java | 31 +-
.../org/apache/uima/collection/CasInitializer.java | 11 +-
.../uima/collection/CasInitializerDescription.java | 3 +-
.../uima/collection/CasInitializer_ImplBase.java | 9 +-
.../uima/collection/CollectionException.java | 20 +-
.../collection/CollectionProcessingEngine.java | 43 +-
.../collection/CollectionProcessingManager.java | 58 +-
.../apache/uima/collection/CollectionReader.java | 20 +-
.../collection/CollectionReaderDescription.java | 10 +-
.../uima/collection/CollectionReader_ImplBase.java | 20 +-
.../uima/collection/EntityProcessStatus.java | 20 +-
.../uima/collection/StatusCallbackListener.java | 5 +-
.../apache/uima/collection/base_cpm/BaseCPM.java | 68 +-
.../collection/base_cpm/BaseCollectionReader.java | 22 +-
.../base_cpm/BaseStatusCallbackListener.java | 12 +-
.../base_cpm/CasDataCollectionReader.java | 18 +-
.../base_cpm/CasDataCollectionReader_ImplBase.java | 4 +
.../uima/collection/base_cpm/CasDataConsumer.java | 12 +-
.../base_cpm/CasDataConsumer_ImplBase.java | 9 +-
.../collection/base_cpm/CasDataInitializer.java | 13 +-
.../base_cpm/CasDataInitializer_ImplBase.java | 10 +-
.../uima/collection/base_cpm/CasDataProcessor.java | 11 +-
.../base_cpm/CasDataStatusCallbackListener.java | 5 +-
.../collection/base_cpm/CasObjectProcessor.java | 13 +-
.../uima/collection/base_cpm/CasProcessor.java | 16 +-
.../base_cpm/RecoverableCollectionReader.java | 15 +-
.../uima/collection/base_cpm/SkipCasException.java | 2 -
.../uima/collection/base_cpm/SynchPoint.java | 24 +-
.../impl/CasConsumerDescription_impl.java | 22 +-
.../impl/CasInitializerDescription_impl.java | 17 +-
.../impl/CollectionReaderDescription_impl.java | 29 +-
...CasProcessorConfigurationParameterSettings.java | 12 +-
.../metadata/CasProcessorDeploymentParam.java | 45 +-
.../metadata/CasProcessorDeploymentParams.java | 29 +-
.../metadata/CasProcessorErrorHandling.java | 22 +-
.../metadata/CasProcessorErrorRateThreshold.java | 38 +-
.../collection/metadata/CasProcessorExecArg.java | 14 +-
.../collection/metadata/CasProcessorExecArgs.java | 23 +-
.../metadata/CasProcessorExecutable.java | 39 +-
.../collection/metadata/CasProcessorFilter.java | 16 +-
.../metadata/CasProcessorMaxRestarts.java | 37 +-
.../metadata/CasProcessorRunInSeperateProcess.java | 8 +-
.../metadata/CasProcessorRuntimeEnvParam.java | 28 +-
.../collection/metadata/CasProcessorTimeout.java | 8 +-
.../uima/collection/metadata/CpeCasProcessor.java | 196 +-
.../uima/collection/metadata/CpeCasProcessors.java | 89 +-
.../uima/collection/metadata/CpeCheckpoint.java | 32 +-
.../collection/metadata/CpeCollectionReader.java | 35 +-
.../CpeCollectionReaderCasInitializer.java | 22 +-
.../metadata/CpeCollectionReaderIterator.java | 25 +-
.../metadata/CpeComponentDescriptor.java | 45 +-
.../uima/collection/metadata/CpeConfiguration.java | 75 +-
.../uima/collection/metadata/CpeDescription.java | 188 +-
.../uima/collection/metadata/CpeInclude.java | 8 +-
.../collection/metadata/CpeLocalCasProcessor.java | 36 +-
.../metadata/CpeResourceManagerConfiguration.java | 8 +-
.../uima/collection/metadata/CpeSofaMapping.java | 14 +-
.../uima/collection/metadata/CpeSofaMappings.java | 7 +-
.../apache/uima/collection/metadata/CpeTimer.java | 11 +-
.../uima/collection/metadata/NameValuePair.java | 8 +-
.../uima/collection/metadata/OutputQueue.java | 15 +-
.../uima/examples/SourceDocumentInformation.java | 4 +-
.../uima/flow/CasFlowController_ImplBase.java | 10 +-
.../org/apache/uima/flow/CasFlow_ImplBase.java | 36 +-
.../src/main/java/org/apache/uima/flow/Flow.java | 49 +-
.../java/org/apache/uima/flow/FlowController.java | 56 +-
.../uima/flow/FlowControllerDescription.java | 2 +-
.../apache/uima/flow/FlowController_ImplBase.java | 29 +-
.../uima/flow/JCasFlowController_ImplBase.java | 12 +-
.../org/apache/uima/flow/JCasFlow_ImplBase.java | 33 +-
.../java/org/apache/uima/flow/ParallelStep.java | 19 +-
.../main/java/org/apache/uima/flow/SimpleStep.java | 5 +-
.../apache/uima/flow/SimpleStepWithResultSpec.java | 21 +-
.../flow/impl/AnalysisSequenceCapabilityNode.java | 21 +-
.../impl/CapabilityLanguageFlowController.java | 103 +-
.../flow/impl/CapabilityLanguageFlowObject.java | 364 +-
.../apache/uima/flow/impl/FixedFlowController.java | 147 +-
.../uima/flow/impl/FlowControllerContext_impl.java | 31 +-
.../flow/impl/FlowControllerDescription_impl.java | 16 +-
.../uima/impl/AnalysisEngineFactory_impl.java | 9 +-
.../apache/uima/impl/CasConsumerFactory_impl.java | 30 +-
.../uima/impl/CasInitializerFactory_impl.java | 29 +-
.../apache/uima/impl/ChildUimaContext_impl.java | 26 +-
.../uima/impl/CollectionReaderFactory_impl.java | 41 +-
.../uima/impl/CompositeResourceFactory_impl.java | 11 +-
.../uima/impl/CustomResourceFactory_impl.java | 58 +-
.../uima/impl/ResourceSpecifierFactory_impl.java | 84 +-
.../org/apache/uima/impl/RootUimaContext_impl.java | 19 +-
.../java/org/apache/uima/impl/SofaID_impl.java | 4 +
.../org/apache/uima/impl/UIMAFramework_impl.java | 96 +-
.../org/apache/uima/impl/UimaContext_ImplBase.java | 292 +-
.../src/main/java/org/apache/uima/impl/Util.java | 94 +-
.../uima/internal/util/AnalysisEnginePool.java | 59 +-
.../org/apache/uima/internal/util/BinaryTree.java | 1 -
.../org/apache/uima/internal/util/BrowserUtil.java | 19 +-
.../uima/internal/util/CharArraySpanMap.java | 2 -
.../apache/uima/internal/util/CharArrayString.java | 14 +-
.../apache/uima/internal/util/CharacterUtils.java | 5 +-
.../org/apache/uima/internal/util/Class_TCCL.java | 203 +-
.../uima/internal/util/CommandLineParser.java | 9 +-
.../uima/internal/util/Common_hash_support.java | 1103 +--
.../uima/internal/util/ComparableFSIterator.java | 80 +-
.../uima/internal/util/CopyOnWriteObjHashSet.java | 407 +-
.../util/CopyOnWriteOrderedFsSet_array.java | 309 +-
.../uima/internal/util/EncodedPrintStream.java | 10 +-
.../org/apache/uima/internal/util/I18nUtil.java | 33 +-
.../org/apache/uima/internal/util/I18nx_impl.java | 556 +-
.../util/InstrumentationFacility_impl.java | 7 +-
.../internal/util/Int2IntArrayMapFixedSize.java | 149 +-
.../apache/uima/internal/util/Int2ObjHashMap.java | 1215 ++-
.../apache/uima/internal/util/Int2ObjListMap.java | 133 +-
.../apache/uima/internal/util/IntArrayUtils.java | 30 +-
.../org/apache/uima/internal/util/IntBitSet.java | 646 +-
.../apache/uima/internal/util/IntComparator.java | 6 +-
.../org/apache/uima/internal/util/IntHashSet.java | 2088 ++---
.../uima/internal/util/IntKeyValueIterator.java | 2 +-
.../apache/uima/internal/util/IntListIterator.java | 18 +-
.../uima/internal/util/IntPointerIterator.java | 4 +-
.../java/org/apache/uima/internal/util/IntSet.java | 65 +-
.../org/apache/uima/internal/util/IntStack.java | 20 +-
.../org/apache/uima/internal/util/IntVector.java | 246 +-
.../org/apache/uima/internal/util/JavaTimer.java | 9 +-
.../apache/uima/internal/util/JmxMBeanAgent.java | 102 +-
.../java/org/apache/uima/internal/util/Misc.java | 2601 +++---
.../internal/util/MsgLocalizationClassLoader.java | 445 +-
.../uima/internal/util/Obj2IntIdentityHashMap.java | 1184 +--
.../org/apache/uima/internal/util/ObjHashSet.java | 1404 ++--
.../uima/internal/util/OrderedFsSet_array.java | 1407 ++--
.../uima/internal/util/OrderedFsSet_array2.java | 4335 +++++-----
.../java/org/apache/uima/internal/util/Pair.java | 160 +-
.../apache/uima/internal/util/PositiveIntSet.java | 285 +-
.../uima/internal/util/PositiveIntSet_impl.java | 1524 ++--
.../uima/internal/util/ReplaceStringInFiles.java | 24 +-
.../apache/uima/internal/util/ResourcePool.java | 19 +-
.../uima/internal/util/SerializationUtils.java | 18 +-
.../apache/uima/internal/util/SortedIntSet.java | 19 +-
.../apache/uima/internal/util/StringToIntMap.java | 9 +-
.../org/apache/uima/internal/util/StringUtils.java | 15 +-
.../org/apache/uima/internal/util/SymbolTable.java | 5 +-
.../uima/internal/util/TextAnalysisEnginePool.java | 9 +-
.../uima/internal/util/TextStringTokenizer.java | 16 +-
.../apache/uima/internal/util/TextTokenizer.java | 60 +-
.../org/apache/uima/internal/util/TimeSpan.java | 17 +-
.../java/org/apache/uima/internal/util/Timer.java | 1 -
.../apache/uima/internal/util/UIMAClassLoader.java | 137 +-
.../uima/internal/util/UIMALogFormatter.java | 3 +-
.../uima/internal/util/UIMAStreamHandler.java | 1 +
.../org/apache/uima/internal/util/UtilError.java | 6 +-
.../org/apache/uima/internal/util/Utilities.java | 70 +-
.../apache/uima/internal/util/WeakIdentityMap.java | 125 +-
.../org/apache/uima/internal/util/XMLUtils.java | 328 +-
.../apache/uima/internal/util/XmlAttribute.java | 2 +-
.../apache/uima/internal/util/XmlElementName.java | 12 +-
.../internal/util/XmlElementNameAndContents.java | 11 +-
.../uima/internal/util/function/Consumer2.java | 48 +-
.../util/function/Consumer_T_withIOException.java | 52 +-
.../util/function/Consumer_withSaxException.java | 52 +-
.../internal/util/function/DeserBinaryIndexes.java | 52 +-
.../util/function/IntConsumer_withIOException.java | 52 +-
.../util/function/Runnable_withException.java | 48 +-
.../util/function/Runnable_withSaxException.java | 52 +-
.../uima/internal/util/function/package-info.java | 48 +-
.../internal/util/rb_trees/CompIntArrayRBT.java | 11 +-
.../uima/internal/util/rb_trees/Int2IntRBT.java | 180 +-
.../uima/internal/util/rb_trees/IntArrayRBT.java | 464 +-
.../internal/util/rb_trees/IntArrayRBTcommon.java | 1628 ++--
.../uima/internal/util/rb_trees/IntRBTArray.java | 27 +-
.../uima/internal/util/rb_trees/IntRBTNode.java | 9 +-
.../internal/util/rb_trees/IntRedBlackTree.java | 13 +-
.../uima/internal/util/rb_trees/RBTNode.java | 19 +-
.../uima/internal/util/rb_trees/RedBlackTree.java | 23 +-
.../src/main/java/org/apache/uima/jcas/JCas.java | 628 +-
.../java/org/apache/uima/jcas/JCasRegistry.java | 117 +-
.../org/apache/uima/jcas/JFSIndexRepository.java | 36 +-
.../org/apache/uima/jcas/cas/AnnotationBase.java | 85 +-
.../apache/uima/jcas/cas/AnnotationBase_Type.java | 166 +-
.../java/org/apache/uima/jcas/cas/ArrayFSImpl.java | 64 +-
.../org/apache/uima/jcas/cas/BooleanArray.java | 77 +-
.../java/org/apache/uima/jcas/cas/ByteArray.java | 77 +-
.../java/org/apache/uima/jcas/cas/CommonList.java | 659 +-
.../apache/uima/jcas/cas/CommonPrimitiveArray.java | 85 +-
.../java/org/apache/uima/jcas/cas/DoubleArray.java | 86 +-
.../java/org/apache/uima/jcas/cas/EmptyFSList.java | 19 +-
.../org/apache/uima/jcas/cas/EmptyFloatList.java | 15 +-
.../org/apache/uima/jcas/cas/EmptyIntegerList.java | 15 +-
.../java/org/apache/uima/jcas/cas/EmptyList.java | 55 +-
.../org/apache/uima/jcas/cas/EmptyStringList.java | 15 +-
.../java/org/apache/uima/jcas/cas/FSArray.java | 164 +-
.../java/org/apache/uima/jcas/cas/FSArrayList.java | 4 +-
.../java/org/apache/uima/jcas/cas/FSHashSet.java | 4 +-
.../org/apache/uima/jcas/cas/FSLinkedHashSet.java | 4 +-
.../main/java/org/apache/uima/jcas/cas/FSList.java | 153 +-
.../java/org/apache/uima/jcas/cas/FloatArray.java | 85 +-
.../java/org/apache/uima/jcas/cas/FloatList.java | 82 +-
.../main/java/org/apache/uima/jcas/cas/Int2FS.java | 264 +-
.../org/apache/uima/jcas/cas/IntegerArray.java | 84 +-
.../org/apache/uima/jcas/cas/IntegerArrayList.java | 4 +-
.../java/org/apache/uima/jcas/cas/IntegerList.java | 75 +-
.../java/org/apache/uima/jcas/cas/LongArray.java | 90 +-
.../org/apache/uima/jcas/cas/NonEmptyFSList.java | 109 +-
.../apache/uima/jcas/cas/NonEmptyFloatList.java | 100 +-
.../apache/uima/jcas/cas/NonEmptyIntegerList.java | 105 +-
.../org/apache/uima/jcas/cas/NonEmptyList.java | 51 +-
.../apache/uima/jcas/cas/NonEmptyStringList.java | 106 +-
.../apache/uima/jcas/cas/SelectViaCopyToArray.java | 191 +-
.../java/org/apache/uima/jcas/cas/ShortArray.java | 70 +-
.../main/java/org/apache/uima/jcas/cas/Sofa.java | 321 +-
.../java/org/apache/uima/jcas/cas/StringArray.java | 69 +-
.../java/org/apache/uima/jcas/cas/StringList.java | 53 +-
.../main/java/org/apache/uima/jcas/cas/TOP.java | 72 +-
.../java/org/apache/uima/jcas/cas/TOP_Type.java | 430 +-
.../org/apache/uima/jcas/impl/JCasHashMap.java | 297 +-
.../apache/uima/jcas/impl/JCasHashMapSubMap.java | 1442 ++--
.../java/org/apache/uima/jcas/impl/JCasImpl.java | 751 +-
.../uima/jcas/impl/JFSIndexRepositoryImpl.java | 20 +-
.../java/org/apache/uima/jcas/tcas/Annotation.java | 193 +-
.../org/apache/uima/jcas/tcas/Annotation_Type.java | 275 +-
.../uima/pear/tools/InstallationController.java | 411 +-
.../uima/pear/tools/InstallationDescriptor.java | 94 +-
.../pear/tools/InstallationDescriptorHandler.java | 20 +-
.../uima/pear/tools/InstallationProcessor.java | 44 +-
.../apache/uima/pear/tools/InstallationTester.java | 346 +-
.../uima/pear/tools/LocalInstallationAgent.java | 34 +-
.../org/apache/uima/pear/tools/PackageBrowser.java | 80 +-
.../org/apache/uima/pear/tools/PackageCreator.java | 40 +-
.../uima/pear/tools/PackageCreatorException.java | 16 +-
.../apache/uima/pear/tools/PackageInstaller.java | 459 +-
.../uima/pear/tools/PackageInstallerException.java | 19 +-
.../apache/uima/pear/tools/PackageSelectorGUI.java | 7 +
.../uima/pear/tools/SimplePackageSelector.java | 15 +-
.../java/org/apache/uima/pear/util/FileUtil.java | 145 +-
.../org/apache/uima/pear/util/MessageRouter.java | 26 +-
.../org/apache/uima/pear/util/ProcessUtil.java | 46 +-
.../java/org/apache/uima/pear/util/StringUtil.java | 4 +-
.../java/org/apache/uima/pear/util/UIMAUtil.java | 52 +-
.../java/org/apache/uima/pear/util/XMLUtil.java | 179 +-
.../org/apache/uima/resource/CasDefinition.java | 25 +-
.../java/org/apache/uima/resource/CasManager.java | 59 +-
.../ConfigurableDataResourceSpecifier.java | 8 +-
.../apache/uima/resource/ConfigurableResource.java | 53 +-
.../resource/ConfigurableResource_ImplBase.java | 13 +-
.../apache/uima/resource/ConfigurationManager.java | 54 +-
.../uima/resource/CustomResourceSpecifier.java | 37 +-
.../org/apache/uima/resource/DataResource.java | 34 +-
.../uima/resource/ExternalResourceDependency.java | 22 +-
.../uima/resource/ExternalResourceDescription.java | 21 +-
.../resource/FileLanguageResourceSpecifier.java | 11 +-
.../uima/resource/FileResourceSpecifier.java | 8 +-
.../uima/resource/JMSMessagingSpecifier.java | 19 +-
.../apache/uima/resource/MQMessagingSpecifier.java | 9 +-
.../uima/resource/MailMessagingSpecifier.java | 17 +-
.../org/apache/uima/resource/ManagementObject.java | 14 +-
.../apache/uima/resource/MessagingSpecifier.java | 41 +-
.../uima/resource/ParameterizedDataResource.java | 2 +-
.../org/apache/uima/resource/PearSpecifier.java | 42 +-
.../apache/uima/resource/RelativePathResolver.java | 10 +-
.../java/org/apache/uima/resource/Resource.java | 91 +-
.../uima/resource/ResourceAccessException.java | 20 +-
.../resource/ResourceConfigurationException.java | 39 +-
.../uima/resource/ResourceCreationSpecifier.java | 108 +-
.../resource/ResourceInitializationException.java | 79 +-
.../org/apache/uima/resource/ResourceManager.java | 244 +-
.../uima/resource/ResourceManagerPearWrapper.java | 88 +-
.../uima/resource/ResourceProcessException.java | 17 +-
.../uima/resource/ResourceServiceException.java | 17 +-
.../uima/resource/ResourceServiceSpecifier.java | 4 +-
.../apache/uima/resource/ResourceServiceStub.java | 7 +-
.../uima/resource/ResourceSpecifierList.java | 12 +-
.../apache/uima/resource/Resource_ImplBase.java | 89 +-
.../java/org/apache/uima/resource/Session.java | 18 +-
.../apache/uima/resource/SharedResourceObject.java | 9 +-
.../org/apache/uima/resource/URISpecifier.java | 28 +-
.../apache/uima/resource/impl/CasManager_impl.java | 182 +-
.../ConfigurableDataResourceSpecifier_impl.java | 13 +-
.../impl/ConfigurableDataResource_impl.java | 7 +
.../impl/ConfigurationManagerImplBase.java | 108 +-
.../resource/impl/ConfigurationManager_impl.java | 49 +-
.../impl/CustomResourceSpecifier_impl.java | 44 +-
.../uima/resource/impl/DataResource_impl.java | 40 +-
.../impl/ExternalResourceDependency_impl.java | 16 +-
.../impl/ExternalResourceDescription_impl.java | 20 +-
.../impl/FileLanguageResourceSpecifier_impl.java | 9 +-
.../resource/impl/FileLanguageResource_impl.java | 15 +-
.../resource/impl/FileResourceSpecifier_impl.java | 15 +-
.../apache/uima/resource/impl/Parameter_impl.java | 7 +
.../uima/resource/impl/PearSpecifier_impl.java | 14 +-
.../resource/impl/RelativePathResolver_impl.java | 15 +-
.../impl/ResourceCreationSpecifier_impl.java | 71 +-
.../uima/resource/impl/ResourceManager_impl.java | 421 +-
.../resource/impl/SessionNamespaceView_impl.java | 3 +-
.../apache/uima/resource/impl/Session_impl.java | 3 +-
.../uima/resource/impl/URISpecifier_impl.java | 11 +
.../uima/resource/metadata/AllowedValue.java | 8 +-
.../apache/uima/resource/metadata/Capability.java | 65 +-
.../uima/resource/metadata/ConfigurationGroup.java | 19 +-
.../resource/metadata/ConfigurationParameter.java | 57 +-
.../ConfigurationParameterDeclarations.java | 55 +-
.../metadata/ConfigurationParameterSettings.java | 30 +-
.../resource/metadata/ExternalResourceBinding.java | 11 +-
.../uima/resource/metadata/FeatureDescription.java | 20 +-
.../uima/resource/metadata/FsIndexCollection.java | 10 +-
.../uima/resource/metadata/FsIndexDescription.java | 25 +-
.../resource/metadata/FsIndexKeyDescription.java | 20 +-
.../org/apache/uima/resource/metadata/Import.java | 12 +-
.../resource/metadata/LanguagePrecondition.java | 21 +-
.../uima/resource/metadata/MetaDataObject.java | 48 +-
.../resource/metadata/MimeTypePrecondition.java | 14 +-
.../uima/resource/metadata/NameValuePair.java | 8 +-
.../resource/metadata/OperationalProperties.java | 14 +-
.../uima/resource/metadata/Precondition.java | 14 +-
.../metadata/ProcessingResourceMetaData.java | 46 +-
.../metadata/ResourceManagerConfiguration.java | 52 +-
.../uima/resource/metadata/ResourceMetaData.java | 38 +-
.../uima/resource/metadata/SimplePrecondition.java | 58 +-
.../uima/resource/metadata/TypeDescription.java | 34 +-
.../uima/resource/metadata/TypePriorities.java | 9 +-
.../uima/resource/metadata/TypePriorityList.java | 11 +-
.../resource/metadata/TypeSystemDescription.java | 3 +-
.../resource/metadata/impl/AllowedValue_impl.java | 5 +
.../resource/metadata/impl/Capability_impl.java | 35 +-
.../metadata/impl/ConfigurationGroup_impl.java | 24 +-
.../ConfigurationParameterDeclarations_impl.java | 41 +-
.../impl/ConfigurationParameterSettings_impl.java | 55 +-
.../metadata/impl/ConfigurationParameter_impl.java | 48 +-
.../impl/ExternalResourceBinding_impl.java | 13 +-
.../metadata/impl/FeatureDescription_impl.java | 15 +-
.../metadata/impl/FsIndexCollection_impl.java | 12 +-
.../metadata/impl/FsIndexDescription_impl.java | 11 +-
.../metadata/impl/FsIndexKeyDescription_impl.java | 42 +-
.../uima/resource/metadata/impl/Import_impl.java | 60 +-
.../metadata/impl/LanguagePrecondition_impl.java | 37 +-
.../impl/MetaDataObjectSerializer_indent.java | 919 +--
.../impl/MetaDataObjectSerializer_plain.java | 292 +-
.../metadata/impl/MetaDataObject_impl.java | 752 +-
.../metadata/impl/MimeTypePrecondition_impl.java | 38 +-
.../resource/metadata/impl/NameValuePair_impl.java | 11 +-
.../metadata/impl/OperationalProperties_impl.java | 33 +-
.../impl/ProcessingResourceMetaData_impl.java | 5 +-
.../resource/metadata/impl/PropertyXmlInfo.java | 14 +-
.../impl/ResourceManagerConfiguration_impl.java | 103 +-
.../metadata/impl/ResourceMetaData_impl.java | 54 +-
.../metadata/impl/SimplePrecondition_impl.java | 29 +-
.../metadata/impl/TypeDescription_impl.java | 20 +-
.../metadata/impl/TypePriorities_impl.java | 37 +-
.../metadata/impl/TypePriorityList_impl.java | 19 +-
.../service/impl/ResourceServiceAdapter.java | 10 +-
.../service/impl/ResourceService_impl.java | 11 +-
.../java/org/apache/uima/search/Attribute.java | 8 +-
.../main/java/org/apache/uima/search/Filter.java | 10 +-
.../org/apache/uima/search/IndexBuildItem.java | 36 +-
.../uima/search/IndexBuildSpecification.java | 24 +-
.../java/org/apache/uima/search/IndexRule.java | 4 +-
.../org/apache/uima/search/IndexingException.java | 17 +-
.../main/java/org/apache/uima/search/Mapping.java | 8 +-
.../main/java/org/apache/uima/search/Style.java | 43 +-
.../apache/uima/search/impl/Attribute_impl.java | 7 +
.../org/apache/uima/search/impl/Filter_impl.java | 15 +-
.../uima/search/impl/IndexBuildItem_impl.java | 7 +
.../search/impl/IndexBuildSpecification_impl.java | 14 +-
.../apache/uima/search/impl/IndexRule_impl.java | 3 +
.../org/apache/uima/search/impl/Mapping_impl.java | 12 +-
.../org/apache/uima/search/impl/Style_impl.java | 12 +-
.../org/apache/uima/uimacpp/CppUimajEngine.java | 20 +-
.../uima/uimacpp/UimacppAnalysisComponent.java | 131 +-
.../org/apache/uima/uimacpp/UimacppEngine.java | 78 +-
.../org/apache/uima/uimacpp/UimacppException.java | 6 +-
.../util/AnalysisEnginePerformanceReports.java | 1 +
.../org/apache/uima/util/AnalysisEngineUtils.java | 2 +-
.../apache/uima/util/AutoCloseableNoException.java | 68 +-
.../main/java/org/apache/uima/util/CasCopier.java | 1135 +--
.../org/apache/uima/util/CasCreationUtils.java | 907 ++-
.../main/java/org/apache/uima/util/CasIOUtils.java | 399 +-
.../java/org/apache/uima/util/CasLoadMode.java | 207 +-
.../main/java/org/apache/uima/util/CasPool.java | 126 +-
.../org/apache/uima/util/CasPoolManagement.java | 25 +-
.../java/org/apache/uima/util/CasToInlineXml.java | 83 +-
.../uima/util/ConcurrentHashMapWithProducer.java | 130 +-
.../org/apache/uima/util/ConsumerCasUtils.java | 6 +-
.../main/java/org/apache/uima/util/FileUtils.java | 46 +-
.../apache/uima/util/InstrumentationFacility.java | 12 +-
.../main/java/org/apache/uima/util/IntEntry.java | 175 +-
.../org/apache/uima/util/InvalidXMLException.java | 27 +-
.../java/org/apache/uima/util/IteratorNvc.java | 69 +-
.../main/java/org/apache/uima/util/JCasPool.java | 1 +
.../src/main/java/org/apache/uima/util/Level.java | 7 +-
.../src/main/java/org/apache/uima/util/Logger.java | 300 +-
.../org/apache/uima/util/LoggerPrintStream.java | 23 +
.../java/org/apache/uima/util/MessageReport.java | 122 +-
.../src/main/java/org/apache/uima/util/Misc.java | 96 +-
.../java/org/apache/uima/util/NameClassPair.java | 11 +-
.../java/org/apache/uima/util/ProcessTrace.java | 30 +-
.../org/apache/uima/util/ProcessTraceEvent.java | 29 +-
.../main/java/org/apache/uima/util/Progress.java | 19 +-
.../java/org/apache/uima/util/ProgressImpl.java | 6 +
.../java/org/apache/uima/util/SaxDeserializer.java | 2 +-
.../main/java/org/apache/uima/util/Settings.java | 89 +-
.../apache/uima/util/SimpleResourceFactory.java | 48 +-
.../java/org/apache/uima/util/TCasFormatter.java | 4 +-
.../java/org/apache/uima/util/TCasToInlineXml.java | 30 +-
.../java/org/apache/uima/util/TypeSystemUtil.java | 19 +-
.../main/java/org/apache/uima/util/UimaTimer.java | 14 +-
.../main/java/org/apache/uima/util/UriUtils.java | 173 +-
.../java/org/apache/uima/util/XMLInputSource.java | 36 +-
.../main/java/org/apache/uima/util/XMLParser.java | 120 +-
.../java/org/apache/uima/util/XMLSerializer.java | 285 +-
.../main/java/org/apache/uima/util/XMLizable.java | 43 +-
.../org/apache/uima/util/XmlCasDeserializer.java | 23 +-
.../org/apache/uima/util/XmlCasSerializer.java | 2 +-
.../uima/util/impl/CasPoolManagementImpl.java | 37 +-
.../uima/util/impl/CasPoolManagementImplMBean.java | 22 +-
.../java/org/apache/uima/util/impl/Constants.java | 84 +-
.../java/org/apache/uima/util/impl/DataIO.java | 224 +-
.../apache/uima/util/impl/JSR47Logger_impl.java | 123 +-
.../apache/uima/util/impl/Log4jLogger_impl.java | 566 +-
.../apache/uima/util/impl/Logger_common_impl.java | 523 +-
.../org/apache/uima/util/impl/Logger_impl.java | 53 +-
.../org/apache/uima/util/impl/OptimizeStrings.java | 184 +-
.../uima/util/impl/ProcessTraceEvent_impl.java | 31 +-
.../apache/uima/util/impl/ProcessTrace_impl.java | 73 +-
.../uima/util/impl/SaxDeserializer_impl.java | 95 +-
.../uima/util/impl/SerializationMeasures.java | 336 +-
.../org/apache/uima/util/impl/Settings_impl.java | 162 +-
.../org/apache/uima/util/impl/XMLParser_impl.java | 250 +-
.../org/apache/uima/impl/UimaVersion.java | 138 +-
uimaj-core/src/test/java/aa/AbstractType.java | 5 +-
uimaj-core/src/test/java/aa/ConcreteType.java | 5 +-
.../src/test/java/aa/MissingFeatureInCas.java | 5 +-
uimaj-core/src/test/java/aa/MissingInCas.java | 5 +-
uimaj-core/src/test/java/aa/Root.java | 5 +-
uimaj-core/src/test/java/aa/T.java | 6 +-
.../test/java/org/apache/lang/LanguagePair.java | 6 +-
.../uima/ae/multiplier/SimpleCasGenerator.java | 336 +-
.../org/apache/uima/ae/noop/NoOpAnnotator.java | 284 +-
.../impl/AnalysisEngineDescription_implTest.java | 192 +-
.../impl/AnalysisEngineManagementImplTest.java | 135 +-
.../impl/AnalysisEngine_implTest.java | 642 +-
.../analysis_engine/impl/AnnotationWriter.java | 24 +-
.../impl/AnnotatorContext_implTest.java | 70 +-
.../AnnotatorForCollectionProcessCompleteTest.java | 28 +-
.../impl/AnnotatorMissingSuper.java | 127 +-
.../uima/analysis_engine/impl/BadSegmenter.java | 6 +-
.../uima/analysis_engine/impl/ErrorAnnotator.java | 3 +-
.../impl/FlowControllerForErrorTest.java | 39 +-
.../analysis_engine/impl/MultiViewAnnotator.java | 4 +-
.../MultiprocessingAnalysisEngine_implTest.java | 244 +-
.../analysis_engine/impl/NewlineResegmenter.java | 9 +-
.../analysis_engine/impl/NewlineSegmenter.java | 6 +-
.../impl/ParallelFlowController.java | 32 +-
.../impl/PearAnalysisEngineWrapperTest.java | 36 +-
.../uima/analysis_engine/impl/ResultSpecTest.java | 407 +-
.../impl/ResultSpecWithTypeSystemTest.java | 510 +-
.../impl/ResultSpecification_implTest.java | 104 +-
.../impl/SegmentDroppingFlowController.java | 9 +-
.../uima/analysis_engine/impl/TabSegmenter.java | 4 +-
.../impl/TaeDescription_implTest.java | 48 +-
.../uima/analysis_engine/impl/TestAnnotator.java | 2 +
.../uima/analysis_engine/impl/TestAnnotator2.java | 62 +-
.../impl/metadata/MetaDataObjectAssert.java | 7 +-
.../impl/metadata/SofaMapping_implTest.java | 19 +-
.../sequencer/SequencerCapabilityLanguageTest.java | 48 +-
.../impl/sequencer/SequencerFixedTest.java | 100 +-
.../impl/sequencer/SequencerTestAnnotator.java | 145 +-
.../uima/cas/impl/AnnotationIteratorTest.java | 938 ++-
.../uima/cas/impl/BinaryCasSerDesPerformance.java | 163 +-
.../java/org/apache/uima/cas/impl/CasPoolTest.java | 125 +-
.../uima/cas/impl/CasTypeSystemMapperTest.java | 605 +-
.../apache/uima/cas/impl/ComponentInfoTest.java | 33 +-
.../impl/ConcurrentBinarySerializationTest.java | 150 +-
.../uima/cas/impl/CustomSerializationTest.java | 211 +-
.../org/apache/uima/cas/impl/FSBagIndexTest.java | 240 +-
.../java/org/apache/uima/cas/impl/FSIndexTest.java | 16 +-
.../org/apache/uima/cas/impl/FeaturePathTest.java | 1566 ++--
.../java/org/apache/uima/cas/impl/Id2FSTest.java | 228 +-
.../cas/impl/IndexCorruptionReportingTest.java | 179 +-
.../org/apache/uima/cas/impl/JCasReinitTest.java | 188 +-
.../uima/cas/impl/OrderedFsSet_array_Test.java | 434 +-
.../org/apache/uima/cas/impl/ProtectIndexTest.java | 38 +-
.../org/apache/uima/cas/impl/SelectFsAssert.java | 688 +-
.../apache/uima/cas/impl/SelectFsNoJCasTest.java | 32 +-
.../cas/impl/SelectFsPredicateAlignmentTest.java | 547 +-
.../org/apache/uima/cas/impl/SelectFsTest.java | 3648 +++++----
.../org/apache/uima/cas/impl/SerDesForm4Test.java | 851 +-
.../apache/uima/cas/impl/SerDesForm6ExtraTest.java | 28 +-
.../org/apache/uima/cas/impl/SerDesForm6Test.java | 626 +-
.../org/apache/uima/cas/impl/SerDesTstCommon.java | 487 +-
.../uima/cas/impl/UimaV2CasCompatibilityTest.java | 14 +-
.../uima/cas/impl/UnambiguousIteratorTest.java | 16 +-
.../apache/uima/cas/impl/XCASDeserializerTest.java | 231 +-
.../uima/cas/impl/XmiCasDeserializerTest.java | 2042 ++---
.../apache/uima/cas/impl/XmiCasSerializerTest.java | 70 +-
.../java/org/apache/uima/cas/impl/XmiCompare.java | 1062 +--
...rializationDeserialization_BINARY_TSI_Test.java | 112 +
...asSerializationDeserialization_BINARY_Test.java | 108 +
...serialization_COMPRESSED_FILTERED_TSI_Test.java | 118 +
...izationDeserialization_SERIALIZED_TSI_Test.java | 111 +
.../CasSerializationDeserialization_XCAS_Test.java | 128 +
...izationDeserialization_XMI_1_0_PRETTY_Test.java | 147 +
...izationDeserialization_XMI_1_1_PRETTY_Test.java | 120 +
.../uima/cas/serdes/CasToComparableText.java | 1003 +++
.../uima/cas/serdes/CasToComparableTextTest.java | 202 +
.../apache/uima/cas/serdes/SerDesAssuptions.java | 33 +
.../uima/cas/serdes/SerDesCasIOTestUtils.java | 310 +
.../java/org/apache/uima/cas/serdes/TestType.java | 101 +
.../uima/cas/serdes/datasuites/CasDataSuite.java | 26 +
.../datasuites/MultiFeatureRandomCasDataSuite.java | 110 +
.../datasuites/MultiTypeRandomCasDataSuite.java | 122 +
.../ProgrammaticallyCreatedCasDataSuite.java | 411 +
.../cas/serdes/datasuites/XmiFileDataSuite.java | 105 +
...SuiteTypeSystemDescriptionMinimizationTool.java | 162 +
.../cas/serdes/generators/CasConfiguration.java | 50 +
.../uima/cas/serdes/generators/CasGenerator.java | 31 +
.../generators/MultiFeatureRandomCasGenerator.java | 457 ++
.../generators/MultiTypeRandomCasGenerator.java | 194 +
.../cas/serdes/scenario/DesSerTestScenario.java | 180 +
.../cas/serdes/scenario/SerDesTestScenario.java | 116 +
.../cas/serdes/scenario/SerRefTestScenario.java | 188 +
.../transitions/CasDesSerCycleConfiguration.java | 48 +
.../transitions/CasSerDesCycleConfiguration.java | 47 +
.../transitions/CasSourceTargetConfiguration.java | 111 +
.../apache/uima/cas/test/AnnotationIndexTest.java | 662 +-
.../apache/uima/cas/test/AnnotationTreeTest.java | 22 +-
.../java/org/apache/uima/cas/test/ArrayFSTest.java | 38 +-
.../org/apache/uima/cas/test/ArrayIndexTest.java | 52 +-
.../org/apache/uima/cas/test/CASInitializer.java | 18 +-
.../java/org/apache/uima/cas/test/CASTest.java | 64 +-
.../org/apache/uima/cas/test/CASTestSetup.java | 36 +-
.../uima/cas/test/CompleteSerializationTest.java | 32 +-
.../org/apache/uima/cas/test/CrossAnnotation.java | 5 +-
.../org/apache/uima/cas/test/EnrichedEntity.java | 4 +-
.../uima/cas/test/FSCreatedInPearContextTest.java | 9 +-
.../java/org/apache/uima/cas/test/FeatureMap.java | 2 +-
.../org/apache/uima/cas/test/FeatureRecord.java | 4 +-
.../apache/uima/cas/test/FeatureStructureTest.java | 878 +-
.../apache/uima/cas/test/FilteredIteratorTest.java | 117 +-
.../org/apache/uima/cas/test/FloatArrayFSTest.java | 226 +-
.../apache/uima/cas/test/GetAllIndexedTest.java | 89 +-
.../cas/test/GrowingTheCasNoJcasCacheTest.java | 54 +-
.../apache/uima/cas/test/GrowingTheCasTest.java | 316 +-
.../apache/uima/cas/test/IndexComparitorTest.java | 108 +-
.../uima/cas/test/IndexRepositoryMergingTest.java | 233 +-
.../apache/uima/cas/test/IndexRepositoryTest.java | 170 +-
.../uima/cas/test/IndexSerializationTest.java | 39 +-
.../org/apache/uima/cas/test/IntArrayFSTest.java | 26 +-
.../apache/uima/cas/test/IteratorSortedTest.java | 715 +-
.../org/apache/uima/cas/test/IteratorTest.java | 707 +-
.../apache/uima/cas/test/JCasClassLoaderTest.java | 282 +-
.../org/apache/uima/cas/test/JcasSofaTest.java | 115 +-
.../java/org/apache/uima/cas/test/Level_1.java | 268 +-
.../java/org/apache/uima/cas/test/Level_2.java | 182 +-
.../java/org/apache/uima/cas/test/Level_3.java | 182 +-
.../java/org/apache/uima/cas/test/Level_4.java | 182 +-
.../java/org/apache/uima/cas/test/Level_5.java | 182 +-
.../java/org/apache/uima/cas/test/Level_6.java | 182 +-
.../uima/cas/test/NewPrimitiveTypesTest.java | 178 +-
.../java/org/apache/uima/cas/test/Sentence.java | 6 +-
.../uima/cas/test/SerializationNoMDTest.java | 30 +-
.../uima/cas/test/SerializationReinitTest.java | 797 +-
.../java/org/apache/uima/cas/test/SofaTest.java | 200 +-
.../org/apache/uima/cas/test/StringArrayTest.java | 67 +-
.../uima/cas/test/StringSubtypeAnnotation.java | 6 +-
.../apache/uima/cas/test/StringSubtypeTest.java | 35 +-
.../apache/uima/cas/test/SubiteratorAnnotator.java | 6 +-
.../org/apache/uima/cas/test/SubiteratorTest.java | 39 +-
.../org/apache/uima/cas/test/TestAnnotator.java | 8 +-
.../test/java/org/apache/uima/cas/test/Token.java | 6 +-
.../org/apache/uima/cas/test/TypeOrderTest.java | 98 +-
.../org/apache/uima/cas/test/TypePriorityTest.java | 56 +-
.../apache/uima/cas/test/TypeSystemReinitTest.java | 47 +-
.../org/apache/uima/cas/test/TypeSystemTest.java | 84 +-
.../apache/uima/cas/test/TypeSystemUtilsTest.java | 31 +-
.../uima/cas/test/UimacppDeserializationTest.java | 45 +-
.../uima/cas/text/AnnotationPredicateAssert.java | 56 +-
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.../org/apache/uima/cas_data/impl/CasComparer.java | 472 +-
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.../org/apache/uima/jcas/impl/JCasHashMapTest.java | 1156 +--
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.../debug-typesystem.xml | 105 +
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uimaj-ep-configurator/.gitignore | 2 +
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uimaj-ep-debug/.gitignore | 2 +
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uimaj-ep-jcasgen/.gitignore | 2 +
uimaj-ep-jcasgen/pom.xml | 2 +-
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uimaj-ep-launcher/.gitignore | 2 +
uimaj-ep-launcher/pom.xml | 2 +-
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uimaj-ep-pear-packager/.gitignore | 2 +
uimaj-ep-pear-packager/pom.xml | 2 +-
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.../pear/generate/PearFileResourceExportPage.java | 826 +-
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.../apache/uima/pear/insd/edit/InsdConstants.java | 128 +-
.../pear/insd/edit/PearInstallationDescriptor.java | 277 +-
.../edit/vars/AbstractVarValViewerHandler.java | 721 +-
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.../pear/insd/edit/vars/VarValLabelProvider.java | 144 +-
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.../apache/uima/pear/nature/ProjectCustomizer.java | 477 +-
.../org/apache/uima/pear/nature/UimaNature.java | 159 +-
uimaj-ep-runtime/.gitignore | 2 +
uimaj-ep-runtime/pom.xml | 2 +-
uimaj-examples/.gitignore | 2 +
uimaj-examples/pom.xml | 2 +-
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.../main/java/org/apache/uima/examples/RunAE.java | 7 +
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.../uima/examples/SourceDocumentInformation.java | 4 +-
.../java/org/apache/uima/examples/XmlDetagger.java | 7 +
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.../org/apache/uima/examples/cpe/SimpleRunCPM.java | 7 +
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.../uima/examples/xmi/XmiCollectionReader.java | 243 +-
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.../java/org/apache/uima/tutorial/TimeAnnot.java | 9 +-
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.../java/org/apache/uima/tutorial/UimaMeeting.java | 9 +-
.../java/org/apache/uima/tutorial/WordAnnot.java | 6 +-
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.../apache/uima/tutorial/ex4/MeetingAnnotator.java | 2 +
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.../uima/tutorial/ex6/StringMapResource.java | 2 +-
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uimaj-json/.gitignore | 2 +
uimaj-json/pom.xml | 2 +-
.../org/apache/uima/json/JsonCasSerializer.java | 2992 +++----
.../apache/uima/json/JsonMetaDataSerializer.java | 347 +-
.../impl/JsonContentHandlerJacksonWrapper.java | 820 +-
.../json/impl/MetaDataObjectSerializer_json.java | 441 +-
.../apache/uima/json/JsonCasSerializerTest.java | 1224 +--
.../apache/uima/json/JsonMetaDataObjectTest.java | 382 +-
.../apache/uima/json/JsonXmiCasSerializerTest.java | 76 +-
.../resource/metadata/impl/TestFruitBagObject.java | 148 +-
.../resource/metadata/impl/TestFruitObject.java | 311 +-
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uimaj-parent/pom.xml | 37 +-
uimaj-test-util/.gitignore | 2 +
uimaj-test-util/pom.xml | 15 +-
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uimaj-tools/.gitignore | 2 +
uimaj-tools/pom.xml | 2 +-
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.../apache/uima/tools/AnnotationViewerMain.java | 4 +-
.../components/FileSystemCollectionReader.java | 5 +
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.../java/org/apache/uima/tools/cpm/CpmPanel.java | 4377 +++++-----
.../uima/tools/cpm/JTabbedPaneWithCloseIcons.java | 1 -
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.../org/apache/uima/tools/cvd/LogFileViewer.java | 1 -
.../java/org/apache/uima/tools/cvd/MainFrame.java | 5699 +++++++------
.../org/apache/uima/tools/cvd/MarkupExtent.java | 1 -
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.../org/apache/uima/tools/cvd/RecentFilesList.java | 261 +-
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.../tools/cvd/control/XmiCasFileOpenHandler.java | 154 +-
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.../java/org/apache/uima/tools/jcasgen/IError.java | 8 +-
.../java/org/apache/uima/tools/jcasgen/IMerge.java | 2 +-
.../uima/tools/jcasgen/IProgressMonitor.java | 8 +-
.../uima/tools/jcasgen/JCasTypeTemplate.java | 4 +-
.../java/org/apache/uima/tools/jcasgen/Jg.java | 2 +-
.../uima/tools/pear/install/InstallPear.java | 1 -
.../uima/tools/pear/merger/PMController.java | 917 +--
.../uima/tools/pear/merger/PMControllerHelper.java | 466 +-
.../apache/uima/tools/pear/merger/PMUimaAgent.java | 724 +-
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.../uima/tools/pear/merger/PearMergerTest.java | 290 +-
.../uima/tools/viewer/CasAnnotationViewerTest.java | 648 +-
uimaj-v3migration-jcas/pom.xml | 2 +-
.../apache/uima/migratev3/jcas/MigrateJCas.java | 7120 ++++++++---------
.../apache/uima/cas/impl/AnnotationIndexImpl.java | 442 +-
.../cas/impl/FSIteratorWrapperDoubleCheck.java | 312 +-
.../apache/uima/cas/impl/FSListIteratorImpl.java | 322 +-
.../src/org/apache/uima/cas/impl/FSRBTIndex.java | 302 +-
.../org/apache/uima/cas/impl/FeatureArrayImpl.java | 118 +-
.../apache/uima/cas/impl/FeatureGetter_int.java | 52 +-
.../apache/uima/cas/impl/FeatureGetter_ref.java | 52 +-
.../apache/uima/cas/impl/FeatureSetter_int.java | 50 +-
.../apache/uima/cas/impl/FeatureSetter_ref.java | 50 +-
.../uima/cas/impl/FeatureStructureClassGen.java | 978 +--
.../src/org/apache/uima/cas/impl/FsIndex_aggr.java | 466 +-
.../uima/cas/impl/FsIterator_set_sorted.java | 528 +-
.../impl/FsIterator_set_sorted_navset_version.java | 540 +-
.../apache/uima/cas/impl/FsIterator_subtypes.java | 116 +-
.../cas/impl/FsIterator_subtypes_list_unused.java | 68 +-
.../uima/cas/impl/JCasCoverClassFactoryTest.java | 123 +-
.../src/org/apache/uima/cas/impl/TypeImplList.java | 72 +-
.../src/org/apache/uima/cas/impl/TypeImplMap.java | 90 +-
.../impl/XXXdont_use_JCasCoverClassFactory.java | 1010 +--
.../impl/JCasCoverClassFactoryTest.java | 129 +-
.../util/ComparableIntPointerIterator.java | 94 +-
.../apache/uima/internal/util/Int2IntHashMap.java | 1034 +--
.../uima/internal/util/Int2IntHashMapTest.java | 179 +-
.../apache/uima/internal/util/Int2IntPerfTest.java | 310 +-
.../internal/util/UIMATypeSystemClassLoader.java | 308 +-
.../util/UIMATypeSystemClassLoaderInjector.java | 238 +-
.../org/apache/uima/jcas/cas/JavaObjectArray.java | 386 +-
.../src/org/apache/uima/jcas/impl/CASMetadata.java | 82 +-
.../uima/jcas/impl/JCasCoverClassFactory.java | 704 +-
.../uima/jcas/impl/JCasCoverClassFactoryTest.java | 122 +-
.../src/org/apache/uima/jcas/impl/JCasHashMap.java | 888 +--
.../uima/jcas/impl/JCasHashMapCompareTest.java | 400 +-
.../apache/uima/jcas/impl/JCasHashMapSubMap.java | 836 +-
.../org/apache/uima/jcas/impl/JCasHashMapTest.java | 945 +--
.../apache/uima/jcasgen/JCasClassDefinition.java | 134 +-
.../uima/jcasgen/impl/JCasClassConversion.java | 508 +-
.../uima/tools/jcas/internal/AnalyzeContent.java | 690 +-
.../uima/tools/jcasgen/DecompiledFilter.java | 312 +-
.../src/study/asm/decompiled/AnnotationDumpV3.java | 568 +-
3624 files changed, 232121 insertions(+), 130560 deletions(-)
create mode 100644 PearPackagingMavenPlugin/.gitignore
create mode 100755 installEclipseSettings.sh
create mode 100644 jVinci/.gitignore
create mode 100644 jcasgen-maven-plugin/.gitignore
create mode 100644 src/main/eclipse/org.eclipse.jdt.core.prefs
create mode 100644 src/main/eclipse/org.eclipse.jdt.ui.prefs
create mode 100644 uimaj-adapter-soap/.gitignore
create mode 100644 uimaj-adapter-vinci/.gitignore
create mode 100644 uimaj-bootstrap/.gitignore
create mode 100644 uimaj-component-test-util/.gitignore
create mode 100644 uimaj-core/.gitignore
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasSerializationDeserialization_BINARY_TSI_Test.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasSerializationDeserialization_BINARY_Test.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasSerializationDeserialization_COMPRESSED_FILTERED_TSI_Test.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasSerializationDeserialization_SERIALIZED_TSI_Test.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasSerializationDeserialization_XCAS_Test.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasSerializationDeserialization_XMI_1_0_PRETTY_Test.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasSerializationDeserialization_XMI_1_1_PRETTY_Test.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasToComparableText.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/CasToComparableTextTest.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/SerDesAssuptions.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/SerDesCasIOTestUtils.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/TestType.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/datasuites/CasDataSuite.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/datasuites/MultiFeatureRandomCasDataSuite.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/datasuites/MultiTypeRandomCasDataSuite.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/datasuites/ProgrammaticallyCreatedCasDataSuite.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/datasuites/XmiFileDataSuite.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/datasuites/XmiFileDataSuiteTypeSystemDescriptionMinimizationTool.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/generators/CasConfiguration.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/generators/CasGenerator.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/generators/MultiFeatureRandomCasGenerator.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/generators/MultiTypeRandomCasGenerator.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/scenario/DesSerTestScenario.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/scenario/SerDesTestScenario.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/scenario/SerRefTestScenario.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/transitions/CasDesSerCycleConfiguration.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/transitions/CasSerDesCycleConfiguration.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/cas/serdes/transitions/CasSourceTargetConfiguration.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/internal/util/MultiThreadUtilsTest.java
create mode 100644 uimaj-core/src/test/java/org/apache/uima/util/impl/Log4JLogger_implCapturingTest.java
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_collections/cas.bin
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_collections/debug-typesystem.xml
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_collections/debug.xmi
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_empty_array_reference/cas.bin
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_empty_array_reference/debug-typesystem.xml
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_empty_array_reference/debug.xmi
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_inheritance/cas.bin
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_inheritance/debug-typesystem.xml
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_inheritance/debug.xmi
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_nonindexed_fs/cas.bin
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_nonindexed_fs/debug-typesystem.xml
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_nonindexed_fs/debug.xmi
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_references/cas.bin
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_references/debug-typesystem.xml
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_references/debug.xmi
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_reserved_names/cas.bin
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_reserved_names/debug-typesystem.xml
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_reserved_names/debug.xmi
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_smileys/cas.bin
create mode 100644 uimaj-core/src/test/resources/CasSerializationDeserialization_BINARY_TSI_Test/one-way/cas_with_smileys/debug-typesystem.xml
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create mode 100644 uimaj-core/src/test/resources/XmiFileDataSuite/tsv3-testZeroLengthSlotFeature1/data.xmi
create mode 100644 uimaj-core/src/test/resources/XmiFileDataSuite/tsv3-testZeroLengthSlotFeature1/typesystem.xml
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create mode 100644 uimaj-core/src/test/resources/XmiFileDataSuite/tsv3-testZeroLengthSpansWithFeatureValues/data.xmi
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create mode 100644 uimaj-core/src/test/resources/XmiFileDataSuite/tsv3-testZeroWidthAnnotationBeyondLastTokenIsMovedToEndOfLastToken/data.xmi
create mode 100644 uimaj-core/src/test/resources/XmiFileDataSuite/tsv3-testZeroWidthAnnotationBeyondLastTokenIsMovedToEndOfLastToken/typesystem.xml
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[uima-uimaj] 01/01: Merge branch 'main' into bugfix/UIMA-6400-UimaContextHolder-threadlocal-can-leak
Posted by re...@apache.org.
This is an automated email from the ASF dual-hosted git repository.
rec pushed a commit to branch bugfix/UIMA-6400-UimaContextHolder-threadlocal-can-leak
in repository https://gitbox.apache.org/repos/asf/uima-uimaj.git
commit a9afc49bd81abf747c7d12ebe8dcd5b32d53aa0c
Merge: 8ede6d4 5cf965f
Author: Richard Eckart de Castilho <re...@apache.org>
AuthorDate: Mon Dec 13 15:15:47 2021 +0100
Merge branch 'main' into bugfix/UIMA-6400-UimaContextHolder-threadlocal-can-leak
* main: (70 commits)
[UIMA-6374] Create CAS (de)serialization test suite (#160)
[UIMA-6398] Classloader paradoxon and memory leak in UIMA loggers
[UIMA-6397] Remove unnecessary code from Class_TCCL.java
[UIMA-6374] Create CAS (de)serialization test suite
Fixed v3 update site url
[UIMA-6390] NPE when trying to access config names of fresh context
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6372] Upgrade from JUnit 3 to JUnit 4 to JUnit 5
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6374] Create CAS (de)serialization test suite
[UIMA-6373] Format UIMA Core Java SDK codebase
[UIMA-6378] Java SDK does not build on Java 16
...
# Conflicts:
# uimaj-core/src/main/java/org/apache/uima/UimaContextHolder.java
PearPackagingMavenPlugin/.gitignore | 2 +
PearPackagingMavenPlugin/pom.xml | 2 +-
.../apache/uima/pear/tools/PearPackagingMojo.java | 7 +-
aggregate-uimaj-docbooks/pom.xml | 2 +-
aggregate-uimaj-eclipse-plugins/pom.xml | 2 +-
aggregate-uimaj/pom.xml | 2 +-
installEclipseSettings.sh | 71 +
jVinci/.gitignore | 2 +
jVinci/pom.xml | 2 +-
.../org/apache/vinci/transport/Attributes.java | 4 +-
.../org/apache/vinci/transport/BaseServer.java | 3 +-
.../apache/vinci/transport/BaseServerRunnable.java | 1 +
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.../java/org/apache/vinci/transport/Frame.java | 3 +
.../java/org/apache/vinci/transport/FrameLeaf.java | 1 +
.../apache/vinci/transport/LeafCastException.java | 1 -
.../vinci/transport/SimpleTransportable.java | 2 +
.../org/apache/vinci/transport/VinciClient.java | 3 +-
.../org/apache/vinci/transport/VinciFrame.java | 7 +
.../vinci/transport/VinciServableAdapter.java | 3 +
.../org/apache/vinci/transport/VinciServer.java | 2 +
.../vinci/transport/VinciServerRunnable.java | 1 +
.../apache/vinci/transport/XTalkTransporter.java | 2 +
.../vinci/transport/context/VinciContext.java | 1 +
.../apache/vinci/transport/document/AFrame.java | 5 +
.../vinci/transport/document/AFrameLeaf.java | 2 +
.../vinci/transport/document/XMLToVinci.java | 18 +-
.../vinci/transport/document/XMLToXTalk.java | 3 +
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.../transport/util/Base64FormatException.java | 1 -
.../vinci/transport/vns/client/ResolveResult.java | 4 +
.../vinci/transport/vns/client/ServeonResult.java | 2 +
.../vinci/transport/vns/service/Service.java | 4 +
.../vinci/transport/vns/service/ServiceAlias.java | 1 +
.../vinci/transport/vns/service/ServiceInfo.java | 1 +
.../transport/vns/service/ServiceInterface.java | 2 +-
.../transport/vns/service/ServiceRegistry.java | 4 +-
.../apache/vinci/transport/vns/service/VNS.java | 7 +
jcasgen-maven-plugin/.gitignore | 2 +
jcasgen-maven-plugin/pom.xml | 13 +-
.../uima/tools/jcasgen/maven/JCasGenM2ETest.java | 12 +-
.../uima/tools/jcasgen/maven/JCasGenMojo.java | 6 +
.../uima/tools/jcasgen/maven/JCasGenMojoTest.java | 22 +-
.../src/test/resources/invalidFeature/pom.xml | 88 +-
pom.xml | 5 +-
src/main/eclipse/org.eclipse.jdt.core.prefs | 398 +
src/main/eclipse/org.eclipse.jdt.ui.prefs | 121 +
uima-doc-v3-users-guide/pom.xml | 2 +-
uima-docbook-overview-and-setup/pom.xml | 2 +-
.../src/docbook/eclipse_setup.xml | 2 +-
uima-docbook-references/pom.xml | 2 +-
uima-docbook-tools/pom.xml | 2 +-
uima-docbook-tutorials-and-users-guides/pom.xml | 2 +-
uimaj-adapter-soap/.gitignore | 2 +
uimaj-adapter-soap/pom.xml | 2 +-
uimaj-adapter-vinci/.gitignore | 2 +
uimaj-adapter-vinci/pom.xml | 13 +-
.../uima/adapter/vinci/CASTransportable.java | 19 +-
.../vinci/VinciAnalysisEngineServiceAdapter.java | 1 +
.../VinciBinaryAnalysisEngineServiceStub.java | 5 +
.../VinciBinaryAnalysisEngineService_impl.java | 3 +
.../apache/uima/adapter/vinci/util/Descriptor.java | 1 +
.../adapter/vinci/util/SaxVinciFrameBuilder.java | 7 +-
.../vinci/util/UimaSaxVinciFrameBuilder.java | 1 +
.../uima/adapter/vinci/util/VinciSaxParser.java | 7 +-
.../VinciAnalysisEngineServiceAdapterTest.java | 78 +-
uimaj-bootstrap/.gitignore | 2 +
uimaj-bootstrap/pom.xml | 2 +-
.../org/apache/uima/bootstrap/UimaBootstrap.java | 417 +-
uimaj-component-test-util/.gitignore | 2 +
uimaj-component-test-util/pom.xml | 11 +-
.../AnnotatorPerformanceTester.java | 4 +-
.../uima/test/junit_extension/AnnotatorTester.java | 77 +-
.../junit_extension/PerformanceTestResult.java | 36 +-
uimaj-core/.gitignore | 2 +
uimaj-core/pom.xml | 249 +-
.../org/apache/uima/CompositeResourceFactory.java | 6 +-
.../src/main/java/org/apache/uima/Constants.java | 15 +-
.../main/java/org/apache/uima/I18nExceptionI.java | 200 +-
.../apache/uima/InternationalizedException.java | 381 +-
.../uima/InternationalizedRuntimeException.java | 68 +-
.../main/java/org/apache/uima/List_of_ints.java | 864 +-
.../main/java/org/apache/uima/ResourceFactory.java | 37 +-
.../org/apache/uima/ResourceSpecifierFactory.java | 141 +-
.../main/java/org/apache/uima/UIMAException.java | 97 +-
.../main/java/org/apache/uima/UIMAFramework.java | 511 +-
.../java/org/apache/uima/UIMARuntimeException.java | 144 +-
.../apache/uima/UIMA_IllegalArgumentException.java | 17 +-
.../apache/uima/UIMA_IllegalStateException.java | 40 +-
.../uima/UIMA_UnsupportedOperationException.java | 20 +-
.../src/main/java/org/apache/uima/UimaContext.java | 241 +-
.../java/org/apache/uima/UimaContextAdmin.java | 71 +-
.../java/org/apache/uima/UimaSerializable.java | 99 +-
.../java/org/apache/uima/UimaSerializableFSs.java | 75 +-
.../uima/analysis_component/AnalysisComponent.java | 24 +-
.../AnalysisComponent_ImplBase.java | 27 +-
.../analysis_component/Annotator_ImplBase.java | 3 +
.../analysis_component/CasAnnotator_ImplBase.java | 17 +-
.../analysis_component/CasMultiplier_ImplBase.java | 24 +-
.../analysis_component/JCasAnnotator_ImplBase.java | 9 +-
.../JCasMultiplier_ImplBase.java | 16 +-
.../uima/analysis_engine/AnalysisEngine.java | 286 +-
.../analysis_engine/AnalysisEngineDescription.java | 106 +-
.../analysis_engine/AnalysisEngineManagement.java | 26 +-
.../AnalysisEngineProcessException.java | 29 +-
.../analysis_engine/AnalysisEngineServiceStub.java | 20 +-
.../uima/analysis_engine/AnalysisProcessData.java | 12 +-
.../apache/uima/analysis_engine/CasIterator.java | 11 +-
.../apache/uima/analysis_engine/JCasIterator.java | 11 +-
.../ResultNotSupportedException.java | 20 +-
.../uima/analysis_engine/ResultSpecification.java | 302 +-
.../uima/analysis_engine/TaeDescription.java | 1 -
.../uima/analysis_engine/TextAnalysisEngine.java | 1 -
.../apache/uima/analysis_engine/TypeOrFeature.java | 15 +-
.../annotator/AnnotatorConfigurationException.java | 27 +-
.../annotator/AnnotatorContext.java | 186 +-
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.../AnnotatorInitializationException.java | 23 +-
.../annotator/AnnotatorProcessException.java | 18 +-
.../annotator/Annotator_ImplBase.java | 19 +-
.../analysis_engine/annotator/BaseAnnotator.java | 17 +-
.../annotator/GenericAnnotator.java | 4 +-
.../annotator/GenericAnnotator_ImplBase.java | 6 +-
.../analysis_engine/annotator/JTextAnnotator.java | 4 +-
.../annotator/JTextAnnotator_ImplBase.java | 2 +-
.../analysis_engine/annotator/TextAnnotator.java | 4 +-
.../org/apache/uima/analysis_engine/asb/ASB.java | 48 +-
.../uima/analysis_engine/asb/impl/ASB_impl.java | 205 +-
.../analysis_engine/asb/impl/FlowContainer.java | 34 +-
.../asb/impl/FlowControllerContainer.java | 110 +-
.../impl/AggregateAnalysisEngine_impl.java | 109 +-
.../impl/AnalysisEngineDescription_impl.java | 273 +-
.../impl/AnalysisEngineImplBase.java | 255 +-
.../impl/AnalysisEngineManagementImpl.java | 101 +-
.../impl/AnalysisEngineManagementImplMBean.java | 12 +-
.../impl/AnalysisProcessData_impl.java | 20 +-
.../impl/AnnotatorContext_impl.java | 49 +-
.../analysis_engine/impl/EmptyCasIterator.java | 3 +
.../analysis_engine/impl/JCasIteratorWrapper.java | 3 +
.../impl/MultiprocessingAnalysisEngine_impl.java | 160 +-
.../impl/PearAnalysisEngineWrapper.java | 655 +-
.../impl/PrimitiveAnalysisEngine_impl.java | 304 +-
.../impl/ResultSpecification_impl.java | 305 +-
.../apache/uima/analysis_engine/impl/RsFeat.java | 106 +-
.../apache/uima/analysis_engine/impl/RsFeats.java | 265 +-
.../uima/analysis_engine/impl/RsFullFeatNames.java | 122 +-
.../apache/uima/analysis_engine/impl/RsLang.java | 115 +-
.../apache/uima/analysis_engine/impl/RsLangs.java | 728 +-
.../apache/uima/analysis_engine/impl/RsType.java | 294 +-
.../uima/analysis_engine/impl/RsTypesMap.java | 553 +-
.../analysis_engine/impl/TaeDescription_impl.java | 4 +-
.../analysis_engine/impl/TypeOrFeature_impl.java | 36 +-
.../impl/UimacppAnalysisEngineImpl.java | 126 +-
.../AnalysisComponentAdapterFactory.java | 7 +-
.../impl/compatibility/AnnotatorAdapter.java | 41 +-
.../impl/compatibility/CasConsumerAdapter.java | 21 +-
.../compatibility/CollectionReaderAdapter.java | 23 +-
.../metadata/AnalysisEngineMetaData.java | 26 +-
.../metadata/CapabilityLanguageFlow.java | 13 +-
.../uima/analysis_engine/metadata/FixedFlow.java | 20 +-
.../analysis_engine/metadata/FlowConstraints.java | 10 +-
.../metadata/FlowControllerDeclaration.java | 32 +-
.../uima/analysis_engine/metadata/SofaMapping.java | 18 +-
.../metadata/impl/AnalysisEngineMetaData_impl.java | 55 +-
.../metadata/impl/CapabilityLanguageFlow_impl.java | 19 +-
.../metadata/impl/FixedFlow_impl.java | 5 +
.../impl/FlowControllerDeclaration_impl.java | 32 +-
.../metadata/impl/SofaMapping_impl.java | 15 +-
.../service/impl/AnalysisEngineServiceAdapter.java | 20 +-
.../service/impl/AnalysisEngineService_impl.java | 25 +-
.../service/impl/ServiceDataCargo.java | 33 +-
.../main/java/org/apache/uima/cas/AbstractCas.java | 3 +-
.../org/apache/uima/cas/AbstractCas_ImplBase.java | 5 +-
.../java/org/apache/uima/cas/AnnotationBaseFS.java | 4 +-
.../src/main/java/org/apache/uima/cas/ArrayFS.java | 42 +-
.../java/org/apache/uima/cas/BooleanArrayFS.java | 14 +-
.../main/java/org/apache/uima/cas/ByteArrayFS.java | 13 +-
.../src/main/java/org/apache/uima/cas/CAS.java | 633 +-
.../java/org/apache/uima/cas/CASException.java | 23 +-
.../org/apache/uima/cas/CASRuntimeException.java | 459 +-
.../main/java/org/apache/uima/cas/CasOwner.java | 5 +-
.../java/org/apache/uima/cas/CommonArrayFS.java | 52 +-
.../org/apache/uima/cas/ConstraintFactory.java | 7 +-
.../java/org/apache/uima/cas/DoubleArrayFS.java | 8 +-
.../org/apache/uima/cas/FSBooleanConstraint.java | 101 +-
.../java/org/apache/uima/cas/FSComparators.java | 66 +-
.../src/main/java/org/apache/uima/cas/FSIndex.java | 229 +-
.../org/apache/uima/cas/FSIndexRepository.java | 176 +-
.../main/java/org/apache/uima/cas/FSIterator.java | 203 +-
.../src/main/java/org/apache/uima/cas/Feature.java | 28 +-
.../main/java/org/apache/uima/cas/FeaturePath.java | 473 +-
.../java/org/apache/uima/cas/FeatureStructure.java | 81 +-
.../java/org/apache/uima/cas/FeatureValuePath.java | 72 +-
.../java/org/apache/uima/cas/FloatArrayFS.java | 12 +-
.../main/java/org/apache/uima/cas/IntArrayFS.java | 14 +-
.../main/java/org/apache/uima/cas/LongArrayFS.java | 15 +-
.../src/main/java/org/apache/uima/cas/Marker.java | 53 +-
.../java/org/apache/uima/cas/ParsingException.java | 5 +-
.../main/java/org/apache/uima/cas/SelectFSs.java | 1835 +++--
.../java/org/apache/uima/cas/SerialFormat.java | 53 +-
.../java/org/apache/uima/cas/ShortArrayFS.java | 13 +-
.../src/main/java/org/apache/uima/cas/SofaFS.java | 45 +-
.../src/main/java/org/apache/uima/cas/SofaID.java | 16 +-
.../java/org/apache/uima/cas/StringArrayFS.java | 73 +-
.../src/main/java/org/apache/uima/cas/Type.java | 25 +-
.../main/java/org/apache/uima/cas/TypeClass.java | 51 +-
.../java/org/apache/uima/cas/TypeNameSpace.java | 2 -
.../main/java/org/apache/uima/cas/TypeSystem.java | 40 +-
.../apache/uima/cas/admin/CASAdminException.java | 35 +-
.../java/org/apache/uima/cas/admin/CASFactory.java | 15 +-
.../java/org/apache/uima/cas/admin/CASMgr.java | 17 +-
.../apache/uima/cas/admin/FSIndexComparator.java | 27 +-
.../uima/cas/admin/FSIndexRepositoryMgr.java | 15 +-
.../org/apache/uima/cas/admin/LinearTypeOrder.java | 27 +-
.../uima/cas/admin/LinearTypeOrderBuilder.java | 10 +-
.../org/apache/uima/cas/admin/TypeSystemMgr.java | 114 +-
.../main/java/org/apache/uima/cas/impl/AllFSs.java | 383 +-
.../apache/uima/cas/impl/AllowPreexistingFS.java | 48 +-
.../apache/uima/cas/impl/AnnotationBaseImpl.java | 61 +-
.../org/apache/uima/cas/impl/AnnotationImpl.java | 61 +-
.../uima/cas/impl/AnnotationImplException.java | 12 +-
.../apache/uima/cas/impl/AnnotationTreeImpl.java | 4 +-
.../uima/cas/impl/AnnotationTreeNodeImpl.java | 13 +-
.../org/apache/uima/cas/impl/BinaryCasSerDes.java | 4049 +++++-----
.../org/apache/uima/cas/impl/BinaryCasSerDes4.java | 3150 ++++----
.../org/apache/uima/cas/impl/BinaryCasSerDes6.java | 2943 +++----
.../apache/uima/cas/impl/BooleanArrayFSImpl.java | 62 +-
.../apache/uima/cas/impl/BooleanConstraint.java | 130 +-
.../org/apache/uima/cas/impl/BuiltinTypeKinds.java | 358 +-
.../org/apache/uima/cas/impl/ByteArrayFSImpl.java | 62 +-
.../java/org/apache/uima/cas/impl/ByteHeap.java | 237 +-
.../uima/cas/impl/CASCompleteSerializer.java | 3 +-
.../java/org/apache/uima/cas/impl/CASImpl.java | 3825 ++++-----
.../org/apache/uima/cas/impl/CASMgrSerializer.java | 147 +-
.../org/apache/uima/cas/impl/CASSerializer.java | 756 +-
.../java/org/apache/uima/cas/impl/CasCompare.java | 4471 ++++++-----
.../org/apache/uima/cas/impl/CasSeqAddrMaps.java | 127 +-
.../apache/uima/cas/impl/CasSerializerSupport.java | 2871 +++----
.../java/org/apache/uima/cas/impl/CasState.java | 117 +-
.../apache/uima/cas/impl/CasTypeSystemMapper.java | 143 +-
.../apache/uima/cas/impl/CommonArrayFSImpl.java | 61 +-
.../org/apache/uima/cas/impl/CommonAuxHeap.java | 402 +-
.../org/apache/uima/cas/impl/CommonSerDes.java | 566 +-
.../uima/cas/impl/CommonSerDesSequential.java | 432 +-
.../uima/cas/impl/ConjunctiveConstraint.java | 3 +-
.../uima/cas/impl/ConstraintFactoryImpl.java | 116 +-
.../apache/uima/cas/impl/CopyOnWriteIndexPart.java | 117 +-
.../uima/cas/impl/DebugFSLogicalStructure.java | 29 +-
.../apache/uima/cas/impl/DebugNameValuePair.java | 1 +
.../apache/uima/cas/impl/DeferredIndexUpdates.java | 146 +-
.../uima/cas/impl/DisjunctiveConstraint.java | 3 +-
.../apache/uima/cas/impl/DoubleArrayFSImpl.java | 62 +-
.../apache/uima/cas/impl/EmbeddedConstraint.java | 2 +
.../uima/cas/impl/FSBooleanConstraintImpl.java | 132 +-
.../org/apache/uima/cas/impl/FSClassRegistry.java | 1770 +++--
.../org/apache/uima/cas/impl/FSComparator.java | 5 +-
.../java/org/apache/uima/cas/impl/FSGenerator.java | 73 +-
.../org/apache/uima/cas/impl/FSImplComparator.java | 8 +-
.../uima/cas/impl/FSIndexComparatorImpl.java | 81 +-
.../uima/cas/impl/FSIndexRepositoryImpl.java | 1695 ++--
.../apache/uima/cas/impl/FSIntConstraintImpl.java | 7 +
.../apache/uima/cas/impl/FSIteratorImplBase.java | 223 +-
.../uima/cas/impl/FSStringConstraintImpl.java | 1 -
.../apache/uima/cas/impl/FSTypeConstraintImpl.java | 112 +-
.../org/apache/uima/cas/impl/FSsTobeAddedback.java | 109 +-
.../java/org/apache/uima/cas/impl/FeatureImpl.java | 267 +-
.../uima/cas/impl/FeatureImpl_jcas_only.java | 92 +-
.../org/apache/uima/cas/impl/FeaturePathImpl.java | 443 +-
.../apache/uima/cas/impl/FeatureStructureImpl.java | 12 +-
.../uima/cas/impl/FeatureStructureImplC.java | 1868 +++--
.../apache/uima/cas/impl/FeatureValuePathImpl.java | 2125 ++---
.../org/apache/uima/cas/impl/FilteredIterator.java | 49 +-
.../org/apache/uima/cas/impl/FloatArrayFSImpl.java | 62 +-
.../org/apache/uima/cas/impl/FsGenerator3.java | 64 +-
.../org/apache/uima/cas/impl/FsGeneratorArray.java | 65 +-
.../apache/uima/cas/impl/FsIndex_annotation.java | 316 +-
.../java/org/apache/uima/cas/impl/FsIndex_bag.java | 171 +-
.../org/apache/uima/cas/impl/FsIndex_flat.java | 466 +-
.../org/apache/uima/cas/impl/FsIndex_iicp.java | 1263 +--
.../apache/uima/cas/impl/FsIndex_set_sorted.java | 572 +-
.../apache/uima/cas/impl/FsIndex_singletype.java | 212 +-
.../org/apache/uima/cas/impl/FsIndex_snapshot.java | 344 +-
.../cas/impl/FsIterator_aggregation_common.java | 604 +-
.../apache/uima/cas/impl/FsIterator_backwards.java | 296 +-
.../org/apache/uima/cas/impl/FsIterator_bag.java | 404 +-
.../apache/uima/cas/impl/FsIterator_bag_pear.java | 97 +-
.../apache/uima/cas/impl/FsIterator_limited.java | 457 +-
.../uima/cas/impl/FsIterator_multiple_indexes.java | 414 +-
.../uima/cas/impl/FsIterator_set_sorted2.java | 677 +-
.../uima/cas/impl/FsIterator_set_sorted_pear.java | 99 +-
.../uima/cas/impl/FsIterator_singletype.java | 203 +-
.../uima/cas/impl/FsIterator_subtypes_ordered.java | 1266 +--
.../cas/impl/FsIterator_subtypes_snapshot.java | 557 +-
.../main/java/org/apache/uima/cas/impl/Heap.java | 627 +-
.../main/java/org/apache/uima/cas/impl/Id2FS.java | 704 +-
.../org/apache/uima/cas/impl/IntArrayFSImpl.java | 62 +-
.../org/apache/uima/cas/impl/IntConstraint.java | 2 +
.../uima/cas/impl/LLUnambiguousIteratorImpl.java | 31 +-
.../uima/cas/impl/LinearTypeOrderBuilderImpl.java | 152 +-
.../org/apache/uima/cas/impl/LongArrayFSImpl.java | 62 +-
.../java/org/apache/uima/cas/impl/LongHeap.java | 228 +-
.../java/org/apache/uima/cas/impl/LongSet.java | 155 +-
.../java/org/apache/uima/cas/impl/LowLevelCAS.java | 127 +-
.../apache/uima/cas/impl/LowLevelException.java | 13 +-
.../org/apache/uima/cas/impl/LowLevelIndex.java | 150 +-
.../uima/cas/impl/LowLevelIndexRepository.java | 11 +-
.../org/apache/uima/cas/impl/LowLevelIterator.java | 87 +-
.../uima/cas/impl/LowLevelIterator_empty.java | 176 +-
.../apache/uima/cas/impl/LowLevelTypeSystem.java | 45 +-
.../java/org/apache/uima/cas/impl/MarkerImpl.java | 52 +-
.../apache/uima/cas/impl/MethodHandlesLookup.java | 65 +-
.../apache/uima/cas/impl/OutOfTypeSystemData.java | 27 +-
.../org/apache/uima/cas/impl/PathConstraint.java | 1 -
.../org/apache/uima/cas/impl/SelectFSs_impl.java | 3611 ++++-----
.../org/apache/uima/cas/impl/Serialization.java | 334 +-
.../org/apache/uima/cas/impl/ShortArrayFSImpl.java | 62 +-
.../java/org/apache/uima/cas/impl/ShortHeap.java | 214 +-
.../java/org/apache/uima/cas/impl/SlotKinds.java | 90 +-
.../apache/uima/cas/impl/SlotKindsConstants.java | 139 +-
.../java/org/apache/uima/cas/impl/SofaFSImpl.java | 61 +-
.../apache/uima/cas/impl/StringArrayFSImpl.java | 62 +-
.../org/apache/uima/cas/impl/StringConstraint.java | 2 +
.../java/org/apache/uima/cas/impl/StringHeap.java | 126 +-
.../cas/impl/StringHeapDeserializationHelper.java | 5 +-
.../java/org/apache/uima/cas/impl/StringSet.java | 158 +-
.../java/org/apache/uima/cas/impl/Subiterator.java | 1036 ++-
.../java/org/apache/uima/cas/impl/TypeImpl.java | 984 +--
.../org/apache/uima/cas/impl/TypeImpl_annot.java | 74 +-
.../apache/uima/cas/impl/TypeImpl_annotBase.java | 75 +-
.../org/apache/uima/cas/impl/TypeImpl_array.java | 317 +-
.../org/apache/uima/cas/impl/TypeImpl_list.java | 75 +-
.../apache/uima/cas/impl/TypeImpl_primitive.java | 78 +-
.../org/apache/uima/cas/impl/TypeImpl_string.java | 97 +-
.../uima/cas/impl/TypeImpl_stringSubtype.java | 104 +-
.../apache/uima/cas/impl/TypeNameSpaceImpl.java | 1 +
.../org/apache/uima/cas/impl/TypeSystem2Xml.java | 74 +-
.../apache/uima/cas/impl/TypeSystemConstants.java | 236 +-
.../org/apache/uima/cas/impl/TypeSystemImpl.java | 2783 +++----
.../org/apache/uima/cas/impl/TypeSystemUtils.java | 87 +-
.../org/apache/uima/cas/impl/UimaDecompiler.java | 704 +-
.../org/apache/uima/cas/impl/XCASDeserializer.java | 251 +-
.../apache/uima/cas/impl/XCASParsingException.java | 52 +-
.../org/apache/uima/cas/impl/XCASSerializer.java | 156 +-
.../apache/uima/cas/impl/XMLTypeSystemConsts.java | 16 +-
.../apache/uima/cas/impl/XmiCasDeserializer.java | 1462 ++--
.../org/apache/uima/cas/impl/XmiCasSerializer.java | 1035 +--
.../uima/cas/impl/XmiSerializationSharedData.java | 445 +-
.../org/apache/uima/cas/text/AnnotationFS.java | 69 +-
.../org/apache/uima/cas/text/AnnotationIndex.java | 245 +-
.../apache/uima/cas/text/AnnotationPredicates.java | 15 +-
.../org/apache/uima/cas/text/AnnotationTree.java | 4 -
.../apache/uima/cas/text/AnnotationTreeNode.java | 4 -
.../java/org/apache/uima/cas/text/Language.java | 5 +-
.../java/org/apache/uima/cas_data/CasData.java | 6 +-
.../org/apache/uima/cas_data/FeatureStructure.java | 25 +-
.../org/apache/uima/cas_data/FeatureValue.java | 2 +-
.../org/apache/uima/cas_data/PrimitiveArrayFS.java | 8 +-
.../org/apache/uima/cas_data/PrimitiveValue.java | 7 +-
.../org/apache/uima/cas_data/ReferenceArrayFS.java | 4 +-
.../org/apache/uima/cas_data/ReferenceValue.java | 4 +-
.../org/apache/uima/cas_data/impl/CasDataImpl.java | 17 +-
.../apache/uima/cas_data/impl/CasDataToXCas.java | 16 +-
.../apache/uima/cas_data/impl/CasDataUtils.java | 118 +-
.../uima/cas_data/impl/FeatureStructureImpl.java | 25 +-
.../uima/cas_data/impl/PrimitiveArrayFSImpl.java | 14 +-
.../uima/cas_data/impl/PrimitiveValueImpl.java | 28 +-
.../uima/cas_data/impl/ReferenceArrayFSImpl.java | 11 +-
.../uima/cas_data/impl/ReferenceValueImpl.java | 11 +-
.../cas_data/impl/XCasToCasDataSaxHandler.java | 23 +-
.../org/apache/uima/collection/CasConsumer.java | 7 +-
.../uima/collection/CasConsumerDescription.java | 6 +-
.../uima/collection/CasConsumer_ImplBase.java | 31 +-
.../org/apache/uima/collection/CasInitializer.java | 11 +-
.../uima/collection/CasInitializerDescription.java | 3 +-
.../uima/collection/CasInitializer_ImplBase.java | 9 +-
.../uima/collection/CollectionException.java | 20 +-
.../collection/CollectionProcessingEngine.java | 43 +-
.../collection/CollectionProcessingManager.java | 58 +-
.../apache/uima/collection/CollectionReader.java | 20 +-
.../collection/CollectionReaderDescription.java | 10 +-
.../uima/collection/CollectionReader_ImplBase.java | 20 +-
.../uima/collection/EntityProcessStatus.java | 20 +-
.../uima/collection/StatusCallbackListener.java | 5 +-
.../apache/uima/collection/base_cpm/BaseCPM.java | 68 +-
.../collection/base_cpm/BaseCollectionReader.java | 22 +-
.../base_cpm/BaseStatusCallbackListener.java | 12 +-
.../base_cpm/CasDataCollectionReader.java | 18 +-
.../base_cpm/CasDataCollectionReader_ImplBase.java | 4 +
.../uima/collection/base_cpm/CasDataConsumer.java | 12 +-
.../base_cpm/CasDataConsumer_ImplBase.java | 9 +-
.../collection/base_cpm/CasDataInitializer.java | 13 +-
.../base_cpm/CasDataInitializer_ImplBase.java | 10 +-
.../uima/collection/base_cpm/CasDataProcessor.java | 11 +-
.../base_cpm/CasDataStatusCallbackListener.java | 5 +-
.../collection/base_cpm/CasObjectProcessor.java | 13 +-
.../uima/collection/base_cpm/CasProcessor.java | 16 +-
.../base_cpm/RecoverableCollectionReader.java | 15 +-
.../uima/collection/base_cpm/SkipCasException.java | 2 -
.../uima/collection/base_cpm/SynchPoint.java | 24 +-
.../impl/CasConsumerDescription_impl.java | 22 +-
.../impl/CasInitializerDescription_impl.java | 17 +-
.../impl/CollectionReaderDescription_impl.java | 29 +-
...CasProcessorConfigurationParameterSettings.java | 12 +-
.../metadata/CasProcessorDeploymentParam.java | 45 +-
.../metadata/CasProcessorDeploymentParams.java | 29 +-
.../metadata/CasProcessorErrorHandling.java | 22 +-
.../metadata/CasProcessorErrorRateThreshold.java | 38 +-
.../collection/metadata/CasProcessorExecArg.java | 14 +-
.../collection/metadata/CasProcessorExecArgs.java | 23 +-
.../metadata/CasProcessorExecutable.java | 39 +-
.../collection/metadata/CasProcessorFilter.java | 16 +-
.../metadata/CasProcessorMaxRestarts.java | 37 +-
.../metadata/CasProcessorRunInSeperateProcess.java | 8 +-
.../metadata/CasProcessorRuntimeEnvParam.java | 28 +-
.../collection/metadata/CasProcessorTimeout.java | 8 +-
.../uima/collection/metadata/CpeCasProcessor.java | 196 +-
.../uima/collection/metadata/CpeCasProcessors.java | 89 +-
.../uima/collection/metadata/CpeCheckpoint.java | 32 +-
.../collection/metadata/CpeCollectionReader.java | 35 +-
.../CpeCollectionReaderCasInitializer.java | 22 +-
.../metadata/CpeCollectionReaderIterator.java | 25 +-
.../metadata/CpeComponentDescriptor.java | 45 +-
.../uima/collection/metadata/CpeConfiguration.java | 75 +-
.../uima/collection/metadata/CpeDescription.java | 188 +-
.../uima/collection/metadata/CpeInclude.java | 8 +-
.../collection/metadata/CpeLocalCasProcessor.java | 36 +-
.../metadata/CpeResourceManagerConfiguration.java | 8 +-
.../uima/collection/metadata/CpeSofaMapping.java | 14 +-
.../uima/collection/metadata/CpeSofaMappings.java | 7 +-
.../apache/uima/collection/metadata/CpeTimer.java | 11 +-
.../uima/collection/metadata/NameValuePair.java | 8 +-
.../uima/collection/metadata/OutputQueue.java | 15 +-
.../uima/examples/SourceDocumentInformation.java | 4 +-
.../uima/flow/CasFlowController_ImplBase.java | 10 +-
.../org/apache/uima/flow/CasFlow_ImplBase.java | 36 +-
.../src/main/java/org/apache/uima/flow/Flow.java | 49 +-
.../java/org/apache/uima/flow/FlowController.java | 56 +-
.../uima/flow/FlowControllerDescription.java | 2 +-
.../apache/uima/flow/FlowController_ImplBase.java | 29 +-
.../uima/flow/JCasFlowController_ImplBase.java | 12 +-
.../org/apache/uima/flow/JCasFlow_ImplBase.java | 33 +-
.../java/org/apache/uima/flow/ParallelStep.java | 19 +-
.../main/java/org/apache/uima/flow/SimpleStep.java | 5 +-
.../apache/uima/flow/SimpleStepWithResultSpec.java | 21 +-
.../flow/impl/AnalysisSequenceCapabilityNode.java | 21 +-
.../impl/CapabilityLanguageFlowController.java | 103 +-
.../flow/impl/CapabilityLanguageFlowObject.java | 364 +-
.../apache/uima/flow/impl/FixedFlowController.java | 147 +-
.../uima/flow/impl/FlowControllerContext_impl.java | 31 +-
.../flow/impl/FlowControllerDescription_impl.java | 16 +-
.../uima/impl/AnalysisEngineFactory_impl.java | 9 +-
.../apache/uima/impl/CasConsumerFactory_impl.java | 30 +-
.../uima/impl/CasInitializerFactory_impl.java | 29 +-
.../apache/uima/impl/ChildUimaContext_impl.java | 26 +-
.../uima/impl/CollectionReaderFactory_impl.java | 41 +-
.../uima/impl/CompositeResourceFactory_impl.java | 11 +-
.../uima/impl/CustomResourceFactory_impl.java | 58 +-
.../uima/impl/ResourceSpecifierFactory_impl.java | 84 +-
.../org/apache/uima/impl/RootUimaContext_impl.java | 19 +-
.../java/org/apache/uima/impl/SofaID_impl.java | 4 +
.../org/apache/uima/impl/UIMAFramework_impl.java | 96 +-
.../org/apache/uima/impl/UimaContext_ImplBase.java | 292 +-
.../src/main/java/org/apache/uima/impl/Util.java | 94 +-
.../uima/internal/util/AnalysisEnginePool.java | 59 +-
.../org/apache/uima/internal/util/BinaryTree.java | 1 -
.../org/apache/uima/internal/util/BrowserUtil.java | 19 +-
.../uima/internal/util/CharArraySpanMap.java | 2 -
.../apache/uima/internal/util/CharArrayString.java | 14 +-
.../apache/uima/internal/util/CharacterUtils.java | 5 +-
.../org/apache/uima/internal/util/Class_TCCL.java | 203 +-
.../uima/internal/util/CommandLineParser.java | 9 +-
.../uima/internal/util/Common_hash_support.java | 1103 +--
.../uima/internal/util/ComparableFSIterator.java | 80 +-
.../uima/internal/util/CopyOnWriteObjHashSet.java | 407 +-
.../util/CopyOnWriteOrderedFsSet_array.java | 309 +-
.../uima/internal/util/EncodedPrintStream.java | 10 +-
.../org/apache/uima/internal/util/I18nUtil.java | 33 +-
.../org/apache/uima/internal/util/I18nx_impl.java | 556 +-
.../util/InstrumentationFacility_impl.java | 7 +-
.../internal/util/Int2IntArrayMapFixedSize.java | 149 +-
.../apache/uima/internal/util/Int2ObjHashMap.java | 1215 ++-
.../apache/uima/internal/util/Int2ObjListMap.java | 133 +-
.../apache/uima/internal/util/IntArrayUtils.java | 30 +-
.../org/apache/uima/internal/util/IntBitSet.java | 646 +-
.../apache/uima/internal/util/IntComparator.java | 6 +-
.../org/apache/uima/internal/util/IntHashSet.java | 2088 ++---
.../uima/internal/util/IntKeyValueIterator.java | 2 +-
.../apache/uima/internal/util/IntListIterator.java | 18 +-
.../uima/internal/util/IntPointerIterator.java | 4 +-
.../java/org/apache/uima/internal/util/IntSet.java | 65 +-
.../org/apache/uima/internal/util/IntStack.java | 20 +-
.../org/apache/uima/internal/util/IntVector.java | 246 +-
.../org/apache/uima/internal/util/JavaTimer.java | 9 +-
.../apache/uima/internal/util/JmxMBeanAgent.java | 102 +-
.../java/org/apache/uima/internal/util/Misc.java | 2601 +++---
.../internal/util/MsgLocalizationClassLoader.java | 445 +-
.../uima/internal/util/Obj2IntIdentityHashMap.java | 1184 +--
.../org/apache/uima/internal/util/ObjHashSet.java | 1404 ++--
.../uima/internal/util/OrderedFsSet_array.java | 1407 ++--
.../uima/internal/util/OrderedFsSet_array2.java | 4335 +++++-----
.../java/org/apache/uima/internal/util/Pair.java | 160 +-
.../apache/uima/internal/util/PositiveIntSet.java | 285 +-
.../uima/internal/util/PositiveIntSet_impl.java | 1524 ++--
.../uima/internal/util/ReplaceStringInFiles.java | 24 +-
.../apache/uima/internal/util/ResourcePool.java | 19 +-
.../uima/internal/util/SerializationUtils.java | 18 +-
.../apache/uima/internal/util/SortedIntSet.java | 19 +-
.../apache/uima/internal/util/StringToIntMap.java | 9 +-
.../org/apache/uima/internal/util/StringUtils.java | 15 +-
.../org/apache/uima/internal/util/SymbolTable.java | 5 +-
.../uima/internal/util/TextAnalysisEnginePool.java | 9 +-
.../uima/internal/util/TextStringTokenizer.java | 16 +-
.../apache/uima/internal/util/TextTokenizer.java | 60 +-
.../org/apache/uima/internal/util/TimeSpan.java | 17 +-
.../java/org/apache/uima/internal/util/Timer.java | 1 -
.../apache/uima/internal/util/UIMAClassLoader.java | 137 +-
.../uima/internal/util/UIMALogFormatter.java | 3 +-
.../uima/internal/util/UIMAStreamHandler.java | 1 +
.../org/apache/uima/internal/util/UtilError.java | 6 +-
.../org/apache/uima/internal/util/Utilities.java | 70 +-
.../apache/uima/internal/util/WeakIdentityMap.java | 125 +-
.../org/apache/uima/internal/util/XMLUtils.java | 328 +-
.../apache/uima/internal/util/XmlAttribute.java | 2 +-
.../apache/uima/internal/util/XmlElementName.java | 12 +-
.../internal/util/XmlElementNameAndContents.java | 11 +-
.../uima/internal/util/function/Consumer2.java | 48 +-
.../util/function/Consumer_T_withIOException.java | 52 +-
.../util/function/Consumer_withSaxException.java | 52 +-
.../internal/util/function/DeserBinaryIndexes.java | 52 +-
.../util/function/IntConsumer_withIOException.java | 52 +-
.../util/function/Runnable_withException.java | 48 +-
.../util/function/Runnable_withSaxException.java | 52 +-
.../uima/internal/util/function/package-info.java | 48 +-
.../internal/util/rb_trees/CompIntArrayRBT.java | 11 +-
.../uima/internal/util/rb_trees/Int2IntRBT.java | 180 +-
.../uima/internal/util/rb_trees/IntArrayRBT.java | 464 +-
.../internal/util/rb_trees/IntArrayRBTcommon.java | 1628 ++--
.../uima/internal/util/rb_trees/IntRBTArray.java | 27 +-
.../uima/internal/util/rb_trees/IntRBTNode.java | 9 +-
.../internal/util/rb_trees/IntRedBlackTree.java | 13 +-
.../uima/internal/util/rb_trees/RBTNode.java | 19 +-
.../uima/internal/util/rb_trees/RedBlackTree.java | 23 +-
.../src/main/java/org/apache/uima/jcas/JCas.java | 628 +-
.../java/org/apache/uima/jcas/JCasRegistry.java | 117 +-
.../org/apache/uima/jcas/JFSIndexRepository.java | 36 +-
.../org/apache/uima/jcas/cas/AnnotationBase.java | 85 +-
.../apache/uima/jcas/cas/AnnotationBase_Type.java | 166 +-
.../java/org/apache/uima/jcas/cas/ArrayFSImpl.java | 64 +-
.../org/apache/uima/jcas/cas/BooleanArray.java | 77 +-
.../java/org/apache/uima/jcas/cas/ByteArray.java | 77 +-
.../java/org/apache/uima/jcas/cas/CommonList.java | 659 +-
.../apache/uima/jcas/cas/CommonPrimitiveArray.java | 85 +-
.../java/org/apache/uima/jcas/cas/DoubleArray.java | 86 +-
.../java/org/apache/uima/jcas/cas/EmptyFSList.java | 19 +-
.../org/apache/uima/jcas/cas/EmptyFloatList.java | 15 +-
.../org/apache/uima/jcas/cas/EmptyIntegerList.java | 15 +-
.../java/org/apache/uima/jcas/cas/EmptyList.java | 55 +-
.../org/apache/uima/jcas/cas/EmptyStringList.java | 15 +-
.../java/org/apache/uima/jcas/cas/FSArray.java | 164 +-
.../java/org/apache/uima/jcas/cas/FSArrayList.java | 4 +-
.../java/org/apache/uima/jcas/cas/FSHashSet.java | 4 +-
.../org/apache/uima/jcas/cas/FSLinkedHashSet.java | 4 +-
.../main/java/org/apache/uima/jcas/cas/FSList.java | 153 +-
.../java/org/apache/uima/jcas/cas/FloatArray.java | 85 +-
.../java/org/apache/uima/jcas/cas/FloatList.java | 82 +-
.../main/java/org/apache/uima/jcas/cas/Int2FS.java | 264 +-
.../org/apache/uima/jcas/cas/IntegerArray.java | 84 +-
.../org/apache/uima/jcas/cas/IntegerArrayList.java | 4 +-
.../java/org/apache/uima/jcas/cas/IntegerList.java | 75 +-
.../java/org/apache/uima/jcas/cas/LongArray.java | 90 +-
.../org/apache/uima/jcas/cas/NonEmptyFSList.java | 109 +-
.../apache/uima/jcas/cas/NonEmptyFloatList.java | 100 +-
.../apache/uima/jcas/cas/NonEmptyIntegerList.java | 105 +-
.../org/apache/uima/jcas/cas/NonEmptyList.java | 51 +-
.../apache/uima/jcas/cas/NonEmptyStringList.java | 106 +-
.../apache/uima/jcas/cas/SelectViaCopyToArray.java | 191 +-
.../java/org/apache/uima/jcas/cas/ShortArray.java | 70 +-
.../main/java/org/apache/uima/jcas/cas/Sofa.java | 321 +-
.../java/org/apache/uima/jcas/cas/StringArray.java | 69 +-
.../java/org/apache/uima/jcas/cas/StringList.java | 53 +-
.../main/java/org/apache/uima/jcas/cas/TOP.java | 72 +-
.../java/org/apache/uima/jcas/cas/TOP_Type.java | 430 +-
.../org/apache/uima/jcas/impl/JCasHashMap.java | 297 +-
.../apache/uima/jcas/impl/JCasHashMapSubMap.java | 1442 ++--
.../java/org/apache/uima/jcas/impl/JCasImpl.java | 751 +-
.../uima/jcas/impl/JFSIndexRepositoryImpl.java | 20 +-
.../java/org/apache/uima/jcas/tcas/Annotation.java | 193 +-
.../org/apache/uima/jcas/tcas/Annotation_Type.java | 275 +-
.../uima/pear/tools/InstallationController.java | 411 +-
.../uima/pear/tools/InstallationDescriptor.java | 94 +-
.../pear/tools/InstallationDescriptorHandler.java | 20 +-
.../uima/pear/tools/InstallationProcessor.java | 44 +-
.../apache/uima/pear/tools/InstallationTester.java | 346 +-
.../uima/pear/tools/LocalInstallationAgent.java | 34 +-
.../org/apache/uima/pear/tools/PackageBrowser.java | 80 +-
.../org/apache/uima/pear/tools/PackageCreator.java | 40 +-
.../uima/pear/tools/PackageCreatorException.java | 16 +-
.../apache/uima/pear/tools/PackageInstaller.java | 459 +-
.../uima/pear/tools/PackageInstallerException.java | 19 +-
.../apache/uima/pear/tools/PackageSelectorGUI.java | 7 +
.../uima/pear/tools/SimplePackageSelector.java | 15 +-
.../java/org/apache/uima/pear/util/FileUtil.java | 145 +-
.../org/apache/uima/pear/util/MessageRouter.java | 26 +-
.../org/apache/uima/pear/util/ProcessUtil.java | 46 +-
.../java/org/apache/uima/pear/util/StringUtil.java | 4 +-
.../java/org/apache/uima/pear/util/UIMAUtil.java | 52 +-
.../java/org/apache/uima/pear/util/XMLUtil.java | 179 +-
.../org/apache/uima/resource/CasDefinition.java | 25 +-
.../java/org/apache/uima/resource/CasManager.java | 59 +-
.../ConfigurableDataResourceSpecifier.java | 8 +-
.../apache/uima/resource/ConfigurableResource.java | 53 +-
.../resource/ConfigurableResource_ImplBase.java | 13 +-
.../apache/uima/resource/ConfigurationManager.java | 54 +-
.../uima/resource/CustomResourceSpecifier.java | 37 +-
.../org/apache/uima/resource/DataResource.java | 34 +-
.../uima/resource/ExternalResourceDependency.java | 22 +-
.../uima/resource/ExternalResourceDescription.java | 21 +-
.../resource/FileLanguageResourceSpecifier.java | 11 +-
.../uima/resource/FileResourceSpecifier.java | 8 +-
.../uima/resource/JMSMessagingSpecifier.java | 19 +-
.../apache/uima/resource/MQMessagingSpecifier.java | 9 +-
.../uima/resource/MailMessagingSpecifier.java | 17 +-
.../org/apache/uima/resource/ManagementObject.java | 14 +-
.../apache/uima/resource/MessagingSpecifier.java | 41 +-
.../uima/resource/ParameterizedDataResource.java | 2 +-
.../org/apache/uima/resource/PearSpecifier.java | 42 +-
.../apache/uima/resource/RelativePathResolver.java | 10 +-
.../java/org/apache/uima/resource/Resource.java | 91 +-
.../uima/resource/ResourceAccessException.java | 20 +-
.../resource/ResourceConfigurationException.java | 39 +-
.../uima/resource/ResourceCreationSpecifier.java | 108 +-
.../resource/ResourceInitializationException.java | 79 +-
.../org/apache/uima/resource/ResourceManager.java | 244 +-
.../uima/resource/ResourceManagerPearWrapper.java | 88 +-
.../uima/resource/ResourceProcessException.java | 17 +-
.../uima/resource/ResourceServiceException.java | 17 +-
.../uima/resource/ResourceServiceSpecifier.java | 4 +-
.../apache/uima/resource/ResourceServiceStub.java | 7 +-
.../uima/resource/ResourceSpecifierList.java | 12 +-
.../apache/uima/resource/Resource_ImplBase.java | 89 +-
.../java/org/apache/uima/resource/Session.java | 18 +-
.../apache/uima/resource/SharedResourceObject.java | 9 +-
.../org/apache/uima/resource/URISpecifier.java | 28 +-
.../apache/uima/resource/impl/CasManager_impl.java | 182 +-
.../ConfigurableDataResourceSpecifier_impl.java | 13 +-
.../impl/ConfigurableDataResource_impl.java | 7 +
.../impl/ConfigurationManagerImplBase.java | 108 +-
.../resource/impl/ConfigurationManager_impl.java | 49 +-
.../impl/CustomResourceSpecifier_impl.java | 44 +-
.../uima/resource/impl/DataResource_impl.java | 40 +-
.../impl/ExternalResourceDependency_impl.java | 16 +-
.../impl/ExternalResourceDescription_impl.java | 20 +-
.../impl/FileLanguageResourceSpecifier_impl.java | 9 +-
.../resource/impl/FileLanguageResource_impl.java | 15 +-
.../resource/impl/FileResourceSpecifier_impl.java | 15 +-
.../apache/uima/resource/impl/Parameter_impl.java | 7 +
.../uima/resource/impl/PearSpecifier_impl.java | 14 +-
.../resource/impl/RelativePathResolver_impl.java | 15 +-
.../impl/ResourceCreationSpecifier_impl.java | 71 +-
.../uima/resource/impl/ResourceManager_impl.java | 421 +-
.../resource/impl/SessionNamespaceView_impl.java | 3 +-
.../apache/uima/resource/impl/Session_impl.java | 3 +-
.../uima/resource/impl/URISpecifier_impl.java | 11 +
.../uima/resource/metadata/AllowedValue.java | 8 +-
.../apache/uima/resource/metadata/Capability.java | 65 +-
.../uima/resource/metadata/ConfigurationGroup.java | 19 +-
.../resource/metadata/ConfigurationParameter.java | 57 +-
.../ConfigurationParameterDeclarations.java | 55 +-
.../metadata/ConfigurationParameterSettings.java | 30 +-
.../resource/metadata/ExternalResourceBinding.java | 11 +-
.../uima/resource/metadata/FeatureDescription.java | 20 +-
.../uima/resource/metadata/FsIndexCollection.java | 10 +-
.../uima/resource/metadata/FsIndexDescription.java | 25 +-
.../resource/metadata/FsIndexKeyDescription.java | 20 +-
.../org/apache/uima/resource/metadata/Import.java | 12 +-
.../resource/metadata/LanguagePrecondition.java | 21 +-
.../uima/resource/metadata/MetaDataObject.java | 48 +-
.../resource/metadata/MimeTypePrecondition.java | 14 +-
.../uima/resource/metadata/NameValuePair.java | 8 +-
.../resource/metadata/OperationalProperties.java | 14 +-
.../uima/resource/metadata/Precondition.java | 14 +-
.../metadata/ProcessingResourceMetaData.java | 46 +-
.../metadata/ResourceManagerConfiguration.java | 52 +-
.../uima/resource/metadata/ResourceMetaData.java | 38 +-
.../uima/resource/metadata/SimplePrecondition.java | 58 +-
.../uima/resource/metadata/TypeDescription.java | 34 +-
.../uima/resource/metadata/TypePriorities.java | 9 +-
.../uima/resource/metadata/TypePriorityList.java | 11 +-
.../resource/metadata/TypeSystemDescription.java | 3 +-
.../resource/metadata/impl/AllowedValue_impl.java | 5 +
.../resource/metadata/impl/Capability_impl.java | 35 +-
.../metadata/impl/ConfigurationGroup_impl.java | 24 +-
.../ConfigurationParameterDeclarations_impl.java | 41 +-
.../impl/ConfigurationParameterSettings_impl.java | 55 +-
.../metadata/impl/ConfigurationParameter_impl.java | 48 +-
.../impl/ExternalResourceBinding_impl.java | 13 +-
.../metadata/impl/FeatureDescription_impl.java | 15 +-
.../metadata/impl/FsIndexCollection_impl.java | 12 +-
.../metadata/impl/FsIndexDescription_impl.java | 11 +-
.../metadata/impl/FsIndexKeyDescription_impl.java | 42 +-
.../uima/resource/metadata/impl/Import_impl.java | 60 +-
.../metadata/impl/LanguagePrecondition_impl.java | 37 +-
.../impl/MetaDataObjectSerializer_indent.java | 919 +--
.../impl/MetaDataObjectSerializer_plain.java | 292 +-
.../metadata/impl/MetaDataObject_impl.java | 752 +-
.../metadata/impl/MimeTypePrecondition_impl.java | 38 +-
.../resource/metadata/impl/NameValuePair_impl.java | 11 +-
.../metadata/impl/OperationalProperties_impl.java | 33 +-
.../impl/ProcessingResourceMetaData_impl.java | 5 +-
.../resource/metadata/impl/PropertyXmlInfo.java | 14 +-
.../impl/ResourceManagerConfiguration_impl.java | 103 +-
.../metadata/impl/ResourceMetaData_impl.java | 54 +-
.../metadata/impl/SimplePrecondition_impl.java | 29 +-
.../metadata/impl/TypeDescription_impl.java | 20 +-
.../metadata/impl/TypePriorities_impl.java | 37 +-
.../metadata/impl/TypePriorityList_impl.java | 19 +-
.../service/impl/ResourceServiceAdapter.java | 10 +-
.../service/impl/ResourceService_impl.java | 11 +-
.../java/org/apache/uima/search/Attribute.java | 8 +-
.../main/java/org/apache/uima/search/Filter.java | 10 +-
.../org/apache/uima/search/IndexBuildItem.java | 36 +-
.../uima/search/IndexBuildSpecification.java | 24 +-
.../java/org/apache/uima/search/IndexRule.java | 4 +-
.../org/apache/uima/search/IndexingException.java | 17 +-
.../main/java/org/apache/uima/search/Mapping.java | 8 +-
.../main/java/org/apache/uima/search/Style.java | 43 +-
.../apache/uima/search/impl/Attribute_impl.java | 7 +
.../org/apache/uima/search/impl/Filter_impl.java | 15 +-
.../uima/search/impl/IndexBuildItem_impl.java | 7 +
.../search/impl/IndexBuildSpecification_impl.java | 14 +-
.../apache/uima/search/impl/IndexRule_impl.java | 3 +
.../org/apache/uima/search/impl/Mapping_impl.java | 12 +-
.../org/apache/uima/search/impl/Style_impl.java | 12 +-
.../org/apache/uima/uimacpp/CppUimajEngine.java | 20 +-
.../uima/uimacpp/UimacppAnalysisComponent.java | 131 +-
.../org/apache/uima/uimacpp/UimacppEngine.java | 78 +-
.../org/apache/uima/uimacpp/UimacppException.java | 6 +-
.../util/AnalysisEnginePerformanceReports.java | 1 +
.../org/apache/uima/util/AnalysisEngineUtils.java | 2 +-
.../apache/uima/util/AutoCloseableNoException.java | 68 +-
.../main/java/org/apache/uima/util/CasCopier.java | 1135 +--
.../org/apache/uima/util/CasCreationUtils.java | 907 ++-
.../main/java/org/apache/uima/util/CasIOUtils.java | 399 +-
.../java/org/apache/uima/util/CasLoadMode.java | 207 +-
.../main/java/org/apache/uima/util/CasPool.java | 126 +-
.../org/apache/uima/util/CasPoolManagement.java | 25 +-
.../java/org/apache/uima/util/CasToInlineXml.java | 83 +-
.../uima/util/ConcurrentHashMapWithProducer.java | 130 +-
.../org/apache/uima/util/ConsumerCasUtils.java | 6 +-
.../main/java/org/apache/uima/util/FileUtils.java | 46 +-
.../apache/uima/util/InstrumentationFacility.java | 12 +-
.../main/java/org/apache/uima/util/IntEntry.java | 175 +-
.../org/apache/uima/util/InvalidXMLException.java | 27 +-
.../java/org/apache/uima/util/IteratorNvc.java | 69 +-
.../main/java/org/apache/uima/util/JCasPool.java | 1 +
.../src/main/java/org/apache/uima/util/Level.java | 7 +-
.../src/main/java/org/apache/uima/util/Logger.java | 300 +-
.../org/apache/uima/util/LoggerPrintStream.java | 23 +
.../java/org/apache/uima/util/MessageReport.java | 122 +-
.../src/main/java/org/apache/uima/util/Misc.java | 96 +-
.../java/org/apache/uima/util/NameClassPair.java | 11 +-
.../java/org/apache/uima/util/ProcessTrace.java | 30 +-
.../org/apache/uima/util/ProcessTraceEvent.java | 29 +-
.../main/java/org/apache/uima/util/Progress.java | 19 +-
.../java/org/apache/uima/util/ProgressImpl.java | 6 +
.../java/org/apache/uima/util/SaxDeserializer.java | 2 +-
.../main/java/org/apache/uima/util/Settings.java | 89 +-
.../apache/uima/util/SimpleResourceFactory.java | 48 +-
.../java/org/apache/uima/util/TCasFormatter.java | 4 +-
.../java/org/apache/uima/util/TCasToInlineXml.java | 30 +-
.../java/org/apache/uima/util/TypeSystemUtil.java | 19 +-
.../main/java/org/apache/uima/util/UimaTimer.java | 14 +-
.../main/java/org/apache/uima/util/UriUtils.java | 173 +-
.../java/org/apache/uima/util/XMLInputSource.java | 36 +-
.../main/java/org/apache/uima/util/XMLParser.java | 120 +-
.../java/org/apache/uima/util/XMLSerializer.java | 285 +-
.../main/java/org/apache/uima/util/XMLizable.java | 43 +-
.../org/apache/uima/util/XmlCasDeserializer.java | 23 +-
.../org/apache/uima/util/XmlCasSerializer.java | 2 +-
.../uima/util/impl/CasPoolManagementImpl.java | 37 +-
.../uima/util/impl/CasPoolManagementImplMBean.java | 22 +-
.../java/org/apache/uima/util/impl/Constants.java | 84 +-
.../java/org/apache/uima/util/impl/DataIO.java | 224 +-
.../apache/uima/util/impl/JSR47Logger_impl.java | 123 +-
.../apache/uima/util/impl/Log4jLogger_impl.java | 566 +-
.../apache/uima/util/impl/Logger_common_impl.java | 523 +-
.../org/apache/uima/util/impl/Logger_impl.java | 53 +-
.../org/apache/uima/util/impl/OptimizeStrings.java | 184 +-
.../uima/util/impl/ProcessTraceEvent_impl.java | 31 +-
.../apache/uima/util/impl/ProcessTrace_impl.java | 73 +-
.../uima/util/impl/SaxDeserializer_impl.java | 95 +-
.../uima/util/impl/SerializationMeasures.java | 336 +-
.../org/apache/uima/util/impl/Settings_impl.java | 162 +-
.../org/apache/uima/util/impl/XMLParser_impl.java | 250 +-
.../org/apache/uima/impl/UimaVersion.java | 138 +-
uimaj-core/src/test/java/aa/AbstractType.java | 5 +-
uimaj-core/src/test/java/aa/ConcreteType.java | 5 +-
.../src/test/java/aa/MissingFeatureInCas.java | 5 +-
uimaj-core/src/test/java/aa/MissingInCas.java | 5 +-
uimaj-core/src/test/java/aa/Root.java | 5 +-
uimaj-core/src/test/java/aa/T.java | 6 +-
.../test/java/org/apache/lang/LanguagePair.java | 6 +-
.../uima/ae/multiplier/SimpleCasGenerator.java | 336 +-
.../org/apache/uima/ae/noop/NoOpAnnotator.java | 284 +-
.../impl/AnalysisEngineDescription_implTest.java | 192 +-
.../impl/AnalysisEngineManagementImplTest.java | 135 +-
.../impl/AnalysisEngine_implTest.java | 642 +-
.../analysis_engine/impl/AnnotationWriter.java | 24 +-
.../impl/AnnotatorContext_implTest.java | 70 +-
.../AnnotatorForCollectionProcessCompleteTest.java | 28 +-
.../impl/AnnotatorMissingSuper.java | 127 +-
.../uima/analysis_engine/impl/BadSegmenter.java | 6 +-
.../uima/analysis_engine/impl/ErrorAnnotator.java | 3 +-
.../impl/FlowControllerForErrorTest.java | 39 +-
.../analysis_engine/impl/MultiViewAnnotator.java | 4 +-
.../MultiprocessingAnalysisEngine_implTest.java | 244 +-
.../analysis_engine/impl/NewlineResegmenter.java | 9 +-
.../analysis_engine/impl/NewlineSegmenter.java | 6 +-
.../impl/ParallelFlowController.java | 32 +-
.../impl/PearAnalysisEngineWrapperTest.java | 36 +-
.../uima/analysis_engine/impl/ResultSpecTest.java | 407 +-
.../impl/ResultSpecWithTypeSystemTest.java | 510 +-
.../impl/ResultSpecification_implTest.java | 104 +-
.../impl/SegmentDroppingFlowController.java | 9 +-
.../uima/analysis_engine/impl/TabSegmenter.java | 4 +-
.../impl/TaeDescription_implTest.java | 48 +-
.../uima/analysis_engine/impl/TestAnnotator.java | 2 +
.../uima/analysis_engine/impl/TestAnnotator2.java | 62 +-
.../impl/metadata/MetaDataObjectAssert.java | 7 +-
.../impl/metadata/SofaMapping_implTest.java | 19 +-
.../sequencer/SequencerCapabilityLanguageTest.java | 48 +-
.../impl/sequencer/SequencerFixedTest.java | 100 +-
.../impl/sequencer/SequencerTestAnnotator.java | 145 +-
.../uima/cas/impl/AnnotationIteratorTest.java | 938 ++-
.../uima/cas/impl/BinaryCasSerDesPerformance.java | 163 +-
.../java/org/apache/uima/cas/impl/CasPoolTest.java | 125 +-
.../uima/cas/impl/CasTypeSystemMapperTest.java | 605 +-
.../apache/uima/cas/impl/ComponentInfoTest.java | 33 +-
.../impl/ConcurrentBinarySerializationTest.java | 150 +-
.../uima/cas/impl/CustomSerializationTest.java | 211 +-
.../org/apache/uima/cas/impl/FSBagIndexTest.java | 240 +-
.../java/org/apache/uima/cas/impl/FSIndexTest.java | 16 +-
.../org/apache/uima/cas/impl/FeaturePathTest.java | 1566 ++--
.../java/org/apache/uima/cas/impl/Id2FSTest.java | 228 +-
.../cas/impl/IndexCorruptionReportingTest.java | 179 +-
.../org/apache/uima/cas/impl/JCasReinitTest.java | 188 +-
.../uima/cas/impl/OrderedFsSet_array_Test.java | 434 +-
.../org/apache/uima/cas/impl/ProtectIndexTest.java | 38 +-
.../org/apache/uima/cas/impl/SelectFsAssert.java | 688 +-
.../apache/uima/cas/impl/SelectFsNoJCasTest.java | 32 +-
.../cas/impl/SelectFsPredicateAlignmentTest.java | 547 +-
.../org/apache/uima/cas/impl/SelectFsTest.java | 3648 +++++----
.../org/apache/uima/cas/impl/SerDesForm4Test.java | 851 +-
.../apache/uima/cas/impl/SerDesForm6ExtraTest.java | 28 +-
.../org/apache/uima/cas/impl/SerDesForm6Test.java | 626 +-
.../org/apache/uima/cas/impl/SerDesTstCommon.java | 487 +-
.../uima/cas/impl/UimaV2CasCompatibilityTest.java | 14 +-
.../uima/cas/impl/UnambiguousIteratorTest.java | 16 +-
.../apache/uima/cas/impl/XCASDeserializerTest.java | 231 +-
.../uima/cas/impl/XmiCasDeserializerTest.java | 2042 ++---
.../apache/uima/cas/impl/XmiCasSerializerTest.java | 70 +-
.../java/org/apache/uima/cas/impl/XmiCompare.java | 1062 +--
...rializationDeserialization_BINARY_TSI_Test.java | 112 +
...asSerializationDeserialization_BINARY_Test.java | 108 +
...serialization_COMPRESSED_FILTERED_TSI_Test.java | 118 +
...izationDeserialization_SERIALIZED_TSI_Test.java | 111 +
.../CasSerializationDeserialization_XCAS_Test.java | 128 +
...izationDeserialization_XMI_1_0_PRETTY_Test.java | 147 +
...izationDeserialization_XMI_1_1_PRETTY_Test.java | 120 +
.../uima/cas/serdes/CasToComparableText.java | 1003 +++
.../uima/cas/serdes/CasToComparableTextTest.java | 202 +
.../apache/uima/cas/serdes/SerDesAssuptions.java | 33 +
.../uima/cas/serdes/SerDesCasIOTestUtils.java | 310 +
.../java/org/apache/uima/cas/serdes/TestType.java | 101 +
.../uima/cas/serdes/datasuites/CasDataSuite.java | 26 +
.../datasuites/MultiFeatureRandomCasDataSuite.java | 110 +
.../datasuites/MultiTypeRandomCasDataSuite.java | 122 +
.../ProgrammaticallyCreatedCasDataSuite.java | 411 +
.../cas/serdes/datasuites/XmiFileDataSuite.java | 105 +
...SuiteTypeSystemDescriptionMinimizationTool.java | 162 +
.../cas/serdes/generators/CasConfiguration.java | 50 +
.../uima/cas/serdes/generators/CasGenerator.java | 31 +
.../generators/MultiFeatureRandomCasGenerator.java | 457 ++
.../generators/MultiTypeRandomCasGenerator.java | 194 +
.../cas/serdes/scenario/DesSerTestScenario.java | 180 +
.../cas/serdes/scenario/SerDesTestScenario.java | 116 +
.../cas/serdes/scenario/SerRefTestScenario.java | 188 +
.../transitions/CasDesSerCycleConfiguration.java | 48 +
.../transitions/CasSerDesCycleConfiguration.java | 47 +
.../transitions/CasSourceTargetConfiguration.java | 111 +
.../apache/uima/cas/test/AnnotationIndexTest.java | 662 +-
.../apache/uima/cas/test/AnnotationTreeTest.java | 22 +-
.../java/org/apache/uima/cas/test/ArrayFSTest.java | 38 +-
.../org/apache/uima/cas/test/ArrayIndexTest.java | 52 +-
.../org/apache/uima/cas/test/CASInitializer.java | 18 +-
.../java/org/apache/uima/cas/test/CASTest.java | 64 +-
.../org/apache/uima/cas/test/CASTestSetup.java | 36 +-
.../uima/cas/test/CompleteSerializationTest.java | 32 +-
.../org/apache/uima/cas/test/CrossAnnotation.java | 5 +-
.../org/apache/uima/cas/test/EnrichedEntity.java | 4 +-
.../uima/cas/test/FSCreatedInPearContextTest.java | 9 +-
.../java/org/apache/uima/cas/test/FeatureMap.java | 2 +-
.../org/apache/uima/cas/test/FeatureRecord.java | 4 +-
.../apache/uima/cas/test/FeatureStructureTest.java | 878 +-
.../apache/uima/cas/test/FilteredIteratorTest.java | 117 +-
.../org/apache/uima/cas/test/FloatArrayFSTest.java | 226 +-
.../apache/uima/cas/test/GetAllIndexedTest.java | 89 +-
.../cas/test/GrowingTheCasNoJcasCacheTest.java | 54 +-
.../apache/uima/cas/test/GrowingTheCasTest.java | 316 +-
.../apache/uima/cas/test/IndexComparitorTest.java | 108 +-
.../uima/cas/test/IndexRepositoryMergingTest.java | 233 +-
.../apache/uima/cas/test/IndexRepositoryTest.java | 170 +-
.../uima/cas/test/IndexSerializationTest.java | 39 +-
.../org/apache/uima/cas/test/IntArrayFSTest.java | 26 +-
.../apache/uima/cas/test/IteratorSortedTest.java | 715 +-
.../org/apache/uima/cas/test/IteratorTest.java | 707 +-
.../apache/uima/cas/test/JCasClassLoaderTest.java | 282 +-
.../org/apache/uima/cas/test/JcasSofaTest.java | 115 +-
.../java/org/apache/uima/cas/test/Level_1.java | 268 +-
.../java/org/apache/uima/cas/test/Level_2.java | 182 +-
.../java/org/apache/uima/cas/test/Level_3.java | 182 +-
.../java/org/apache/uima/cas/test/Level_4.java | 182 +-
.../java/org/apache/uima/cas/test/Level_5.java | 182 +-
.../java/org/apache/uima/cas/test/Level_6.java | 182 +-
.../uima/cas/test/NewPrimitiveTypesTest.java | 178 +-
.../java/org/apache/uima/cas/test/Sentence.java | 6 +-
.../uima/cas/test/SerializationNoMDTest.java | 30 +-
.../uima/cas/test/SerializationReinitTest.java | 797 +-
.../java/org/apache/uima/cas/test/SofaTest.java | 200 +-
.../org/apache/uima/cas/test/StringArrayTest.java | 67 +-
.../uima/cas/test/StringSubtypeAnnotation.java | 6 +-
.../apache/uima/cas/test/StringSubtypeTest.java | 35 +-
.../apache/uima/cas/test/SubiteratorAnnotator.java | 6 +-
.../org/apache/uima/cas/test/SubiteratorTest.java | 39 +-
.../org/apache/uima/cas/test/TestAnnotator.java | 8 +-
.../test/java/org/apache/uima/cas/test/Token.java | 6 +-
.../org/apache/uima/cas/test/TypeOrderTest.java | 98 +-
.../org/apache/uima/cas/test/TypePriorityTest.java | 56 +-
.../apache/uima/cas/test/TypeSystemReinitTest.java | 47 +-
.../org/apache/uima/cas/test/TypeSystemTest.java | 84 +-
.../apache/uima/cas/test/TypeSystemUtilsTest.java | 31 +-
.../uima/cas/test/UimacppDeserializationTest.java | 45 +-
.../uima/cas/text/AnnotationPredicateAssert.java | 56 +-
.../uima/cas/text/AnnotationPredicateTestData.java | 160 +-
.../uima/cas/text/AnnotationPredicatesTest.java | 347 +-
.../cas/text/AxiomaticAnnotationPredicates.java | 19 +-
.../org/apache/uima/cas_data/impl/CasComparer.java | 472 +-
.../uima/cas_data/impl/CasDataToXCasTest.java | 25 +-
.../cas_data/impl/XCasToCasDataSaxHandlerTest.java | 71 +-
.../impl/CasConsumerDescription_implTest.java | 21 +-
.../impl/CasInitializerDescription_implTest.java | 16 +-
.../impl/CollectionReaderDescription_implTest.java | 17 +-
.../uima/examples/cpm/sofa/TransAnnotator.java | 1 +
.../impl/CapabilityLanguageFlowControllerTest.java | 26 +-
.../uima/flow/impl/FixedFlowControllerTest.java | 143 +-
.../uima/impl/AnalysisEngineFactory_implTest.java | 21 +-
.../uima/impl/CasConsumerFactory_implTest.java | 21 +-
.../impl/CollectionReaderFactory_implTest.java | 21 +-
.../CustomResourceSpecifierFactory_implTest.java | 37 +-
.../org/apache/uima/impl/SomeCustomResource.java | 17 +-
.../org/apache/uima/impl/UimaContext_implTest.java | 113 +-
.../uima/internal/util/AnalysisEnginePoolTest.java | 73 +-
.../uima/internal/util/Int2ObjHashMapTest.java | 274 +-
.../apache/uima/internal/util/IntBitSetTest.java | 338 +-
.../uima/internal/util/IntHashSetPerfTest.java | 382 +-
.../apache/uima/internal/util/IntHashSetTest.java | 504 +-
.../apache/uima/internal/util/IntVectorTest.java | 197 +-
.../org/apache/uima/internal/util/MiscTest.java | 88 +-
.../uima/internal/util/MultiThreadUtils.java | 746 +-
.../uima/internal/util/MultiThreadUtilsTest.java | 94 +
.../internal/util/Obj2IntIdentityHashMapTest.java | 305 +-
.../apache/uima/internal/util/ObjHashSetTest.java | 382 +-
.../uima/internal/util/PositiveIntSetTest.java | 823 +-
.../uima/internal/util/ResourcePoolTest.java | 52 +-
.../uima/internal/util/UIMAClassLoaderTest.java | 89 +-
.../uima/internal/util/WeakIdentityMapTest.java | 117 +-
.../apache/uima/internal/util/XmlUtilsTest.java | 32 +-
.../internal/util/rb_trees/Int2IntRBTTest.java | 59 +-
.../internal/util/rb_trees/IntArrayRBTTest.java | 214 +-
.../uima/jcas/impl/JCasCoverClassLoadingTest.java | 10 +-
.../uima/jcas/impl/JCasHashMapCompareTest.java | 434 +-
.../org/apache/uima/jcas/impl/JCasHashMapTest.java | 1156 +--
.../org/apache/uima/jcas/tcas/AnnotationTest.java | 285 +-
.../org/apache/uima/jcas/test/CASInitializer.java | 5 +-
.../org/apache/uima/jcas/test/CASTestSetup.java | 20 +-
.../org/apache/uima/jcas/test/FSArrayListTest.java | 182 +-
.../org/apache/uima/jcas/test/FSHashSetTest.java | 236 +-
.../uima/jcas/test/IntegerArrayListTest.java | 180 +-
.../java/org/apache/uima/jcas/test/JCasTest.java | 1581 ++--
.../java/org/apache/uima/jcas/test/JCasTest2.java | 203 +-
.../uima/pear/util/ComponentCategoryTest.java | 33 +-
.../apache/uima/pear/util/PearEncodingTest.java | 33 +-
.../util/PearInstallationVerificationTest.java | 42 +-
.../apache/uima/pear/util/PearInstallerTest.java | 61 +-
.../org/apache/uima/pear/util/PearRuntimeTest.java | 117 +-
.../resource/ConfigurableResource_implTest.java | 52 +-
.../org/apache/uima/resource/TestCasConsumer.java | 2 +-
.../uima/resource/impl/CasManager_implTest.java | 37 +-
...ConfigurableDataResourceSpecifier_implTest.java | 12 +-
.../impl/ConfigurableDataResource_implTest.java | 24 +-
.../uima/resource/impl/DataResource_implTest.java | 27 +-
.../impl/FileLanguageResource_implTest.java | 30 +-
.../uima/resource/impl/PearSpecifier_implTest.java | 62 +-
.../impl/RelativePathResolver_implTest.java | 19 +-
.../impl/ResourceCreationSpecifier_implTest.java | 7 +-
.../resource/impl/ResourceManager_implTest.java | 87 +-
.../resource/impl/TestResourceInterface_impl.java | 17 +-
.../uima/resource/impl/URISpecifier_implTest.java | 16 +-
...onfigurationParameterDeclarations_implTest.java | 19 +-
.../metadata/impl/FsIndexCollection_implTest.java | 50 +-
.../resource/metadata/impl/ImportResolverTest.java | 18 +-
.../resource/metadata/impl/Import_implTest.java | 49 +-
.../metadata/impl/MetaDataObject_implTest.java | 96 +-
.../ResourceManagerConfiguration_implTest.java | 55 +-
.../resource/metadata/impl/TestFruitBagObject.java | 32 +-
.../resource/metadata/impl/TestFruitObject.java | 55 +-
.../metadata/impl/TypePriorities_implTest.java | 53 +-
.../impl/TypeSystemDescription_implTest.java | 15 +-
.../impl/ResourceServiceAdapter_implTest.java | 28 +-
.../service/impl/ResourceService_implTest.java | 23 +-
.../service/impl/TestResourceServiceStub.java | 4 +-
.../uima/testTypeSystem_arrays/OfShorts.java | 6 +-
.../uima/testTypeSystem_arrays/OfStrings.java | 6 +-
.../java/org/apache/uima/util/CasCopierTest.java | 186 +-
.../org/apache/uima/util/CasCreationUtilsTest.java | 208 +-
.../uima/util/CasIOUtilsAlwaysHoldOnTest.java | 35 +-
.../java/org/apache/uima/util/CasIOUtilsTest.java | 177 +-
.../org/apache/uima/util/CasToInlineXmlTest.java | 104 +-
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.../apache/uima/examples/ExampleApplication.java | 1 -
.../main/java/org/apache/uima/examples/RunAE.java | 7 +
.../apache/uima/examples/SofaExampleAnnotator.java | 1 +
.../uima/examples/SofaExampleApplication.java | 3 -
.../uima/examples/SourceDocumentInformation.java | 4 +-
.../java/org/apache/uima/examples/XmlDetagger.java | 7 +
.../uima/examples/cas/PersonTitleAnnotator.java | 3 +
.../apache/uima/examples/cas/RegExAnnotator.java | 3 +
.../examples/casMultiplier/SimpleTextMerger.java | 330 +-
.../casMultiplier/SimpleTextSegmenter.java | 4 +
.../uima/examples/cpe/AnnotationPrinter.java | 6 +
.../examples/cpe/FileSystemCollectionReader.java | 436 +-
.../uima/examples/cpe/InlineXmlCasConsumer.java | 2 +
.../cpe/PersonTitleDBWriterCasConsumer.java | 3 +
.../org/apache/uima/examples/cpe/SimpleRunCPM.java | 7 +
.../uima/examples/cpe/XCasWriterCasConsumer.java | 2 +
.../examples/flow/AdvancedFixedFlowController.java | 608 +-
.../examples/flow/WhiteboardFlowController.java | 3 +
.../examples/flow/WhiteboardFlowController2.java | 4 +
.../apache/uima/examples/tokenizer/Sentence.java | 9 +-
.../tokenizer/SimpleTokenAndSentenceAnnotator.java | 3 +
.../org/apache/uima/examples/tokenizer/Token.java | 9 +-
.../uima/examples/xmi/XmiCollectionReader.java | 243 +-
.../uima/examples/xmi/XmiEcoreCasConsumer.java | 1 +
.../uima/examples/xmi/XmiWriterCasConsumer.java | 2 +
.../java/org/apache/uima/tutorial/DateAnnot.java | 9 +-
.../org/apache/uima/tutorial/DateTimeAnnot.java | 7 +-
.../java/org/apache/uima/tutorial/Meeting.java | 8 +-
.../java/org/apache/uima/tutorial/RoomNumber.java | 7 +-
.../org/apache/uima/tutorial/SentenceAnnot.java | 6 +-
.../java/org/apache/uima/tutorial/TimeAnnot.java | 9 +-
.../java/org/apache/uima/tutorial/UimaAcronym.java | 7 +-
.../java/org/apache/uima/tutorial/UimaMeeting.java | 9 +-
.../java/org/apache/uima/tutorial/WordAnnot.java | 6 +-
.../uima/tutorial/ex1/RoomNumberAnnotator.java | 1 +
.../uima/tutorial/ex2/RoomNumberAnnotator.java | 2 +
.../apache/uima/tutorial/ex3/TutorialDateTime.java | 3 +
.../apache/uima/tutorial/ex4/MeetingAnnotator.java | 2 +
.../uima/tutorial/ex5/RoomNumberAnnotator.java | 2 +
.../uima/tutorial/ex6/StringMapResource.java | 2 +-
.../uima/tutorial/ex6/StringMapResource_impl.java | 2 +
.../uima/tutorial/ex6/UimaAcronymAnnotator.java | 2 +
.../src/org/apache/uima/util/jet/JetExpander.java | 548 +-
uimaj-json/.gitignore | 2 +
uimaj-json/pom.xml | 2 +-
.../org/apache/uima/json/JsonCasSerializer.java | 2992 +++----
.../apache/uima/json/JsonMetaDataSerializer.java | 347 +-
.../impl/JsonContentHandlerJacksonWrapper.java | 820 +-
.../json/impl/MetaDataObjectSerializer_json.java | 441 +-
.../apache/uima/json/JsonCasSerializerTest.java | 1224 +--
.../apache/uima/json/JsonMetaDataObjectTest.java | 382 +-
.../apache/uima/json/JsonXmiCasSerializerTest.java | 76 +-
.../resource/metadata/impl/TestFruitBagObject.java | 148 +-
.../resource/metadata/impl/TestFruitObject.java | 311 +-
.../test/java/org/apache/uima/test/AllTypes.java | 14 +-
.../test/java/org/apache/uima/test/RefTypes.java | 6 +-
uimaj-parent/pom.xml | 37 +-
uimaj-test-util/.gitignore | 2 +
uimaj-test-util/pom.xml | 15 +-
.../uima/test/junit_extension/TeePrintStream.java | 24 +
.../test/junit_extension/UIMAResultPrinter.java | 14 +
uimaj-tools/.gitignore | 2 +
uimaj-tools/pom.xml | 2 +-
.../uima/tools/AnnotationFeaturesViewer.java | 2 -
.../apache/uima/tools/AnnotationViewerMain.java | 4 +-
.../components/FileSystemCollectionReader.java | 5 +
.../tools/components/InlineXmlCasConsumer.java | 2 +
.../tools/components/XCasWriterCasConsumer.java | 2 +
.../tools/components/XmiWriterCasConsumer.java | 2 +
.../apache/uima/tools/components/XmlDetagger.java | 10 +-
.../java/org/apache/uima/tools/cpm/CpmFrame.java | 2 +-
.../java/org/apache/uima/tools/cpm/CpmPanel.java | 4377 +++++-----
.../uima/tools/cpm/JTabbedPaneWithCloseIcons.java | 1 -
.../apache/uima/tools/cpm/TabClosedListener.java | 2 +-
.../cvd/AnnotationDisplayCustomizationFrame.java | 1 -
.../apache/uima/tools/cvd/AnnotationExtent.java | 1 -
.../java/org/apache/uima/tools/cvd/ArrayNode.java | 1 -
.../main/java/org/apache/uima/tools/cvd/CVD.java | 445 +-
.../java/org/apache/uima/tools/cvd/ColorIcon.java | 1 -
.../java/org/apache/uima/tools/cvd/FSNode.java | 2 -
.../org/apache/uima/tools/cvd/FSTreeModel.java | 1 -
.../java/org/apache/uima/tools/cvd/FSTreeNode.java | 1 -
.../org/apache/uima/tools/cvd/IndexTreeNode.java | 2 -
.../org/apache/uima/tools/cvd/LogFileViewer.java | 1 -
.../java/org/apache/uima/tools/cvd/MainFrame.java | 5699 +++++++------
.../org/apache/uima/tools/cvd/MarkupExtent.java | 1 -
.../uima/tools/cvd/MultiAnnotViewerFrame.java | 1 -
.../org/apache/uima/tools/cvd/RecentFilesList.java | 261 +-
.../uima/tools/cvd/StringFsPopupEventAdapter.java | 262 +-
.../org/apache/uima/tools/cvd/TypeTreeNode.java | 2 -
.../cvd/control/AnnotatorOpenEventHandler.java | 1 -
.../tools/cvd/control/FileOpenEventHandler.java | 1 -
.../tools/cvd/control/FileSaveAsEventHandler.java | 1 -
.../tools/cvd/control/FileSaveEventHandler.java | 1 -
.../control/LoadRecentDescFileEventHandler.java | 1 -
.../control/LoadRecentTextFileEventHandler.java | 1 -
.../tools/cvd/control/NewTextEventHandler.java | 1 -
.../uima/tools/cvd/control/PopupHandler.java | 1 -
.../tools/cvd/control/SetLogConfigHandler.java | 1 -
.../uima/tools/cvd/control/TreeFocusHandler.java | 1 -
.../control/TypeSystemFileOpenEventHandler.java | 1 -
.../cvd/control/XCASFileOpenEventHandler.java | 1 -
.../tools/cvd/control/XmiCasFileOpenHandler.java | 154 +-
.../uima/tools/cvd/control/XmiCasSaveHandler.java | 191 +-
.../uima/tools/cvd/tsview/FeatureTableModel.java | 2 -
.../apache/uima/tools/cvd/tsview/MainFrame.java | 1 -
.../tools/docanalyzer/FileSelectorListener.java | 2 +-
.../java/org/apache/uima/tools/jcasgen/GUI.java | 1 -
.../java/org/apache/uima/tools/jcasgen/IError.java | 8 +-
.../java/org/apache/uima/tools/jcasgen/IMerge.java | 2 +-
.../uima/tools/jcasgen/IProgressMonitor.java | 8 +-
.../uima/tools/jcasgen/JCasTypeTemplate.java | 4 +-
.../java/org/apache/uima/tools/jcasgen/Jg.java | 2 +-
.../uima/tools/pear/install/InstallPear.java | 1 -
.../uima/tools/pear/merger/PMController.java | 917 +--
.../uima/tools/pear/merger/PMControllerHelper.java | 466 +-
.../apache/uima/tools/pear/merger/PMUimaAgent.java | 724 +-
.../uima/tools/pear/packager/PearPackager.java | 414 +-
.../tools/stylemap/AnnotationFeaturesViewer.java | 2 -
.../apache/uima/tools/stylemap/ColorRenderer.java | 2 -
.../uima/tools/util/gui/FileSelectorListener.java | 2 +-
.../apache/uima/tools/util/gui/IntegerField.java | 2 -
.../tools/util/gui/TransportControlListener.java | 8 +-
.../uima/tools/viewer/CasAnnotationViewer.java | 1 -
.../apache/uima/tools/viewer/CasTreeViewer.java | 2 -
.../apache/uima/tools/viewer/EntityResolver.java | 134 +-
.../uima/tools/pear/merger/PearMergerTest.java | 290 +-
.../uima/tools/viewer/CasAnnotationViewerTest.java | 648 +-
uimaj-v3migration-jcas/pom.xml | 2 +-
.../apache/uima/migratev3/jcas/MigrateJCas.java | 7120 ++++++++---------
.../apache/uima/cas/impl/AnnotationIndexImpl.java | 442 +-
.../cas/impl/FSIteratorWrapperDoubleCheck.java | 312 +-
.../apache/uima/cas/impl/FSListIteratorImpl.java | 322 +-
.../src/org/apache/uima/cas/impl/FSRBTIndex.java | 302 +-
.../org/apache/uima/cas/impl/FeatureArrayImpl.java | 118 +-
.../apache/uima/cas/impl/FeatureGetter_int.java | 52 +-
.../apache/uima/cas/impl/FeatureGetter_ref.java | 52 +-
.../apache/uima/cas/impl/FeatureSetter_int.java | 50 +-
.../apache/uima/cas/impl/FeatureSetter_ref.java | 50 +-
.../uima/cas/impl/FeatureStructureClassGen.java | 978 +--
.../src/org/apache/uima/cas/impl/FsIndex_aggr.java | 466 +-
.../uima/cas/impl/FsIterator_set_sorted.java | 528 +-
.../impl/FsIterator_set_sorted_navset_version.java | 540 +-
.../apache/uima/cas/impl/FsIterator_subtypes.java | 116 +-
.../cas/impl/FsIterator_subtypes_list_unused.java | 68 +-
.../uima/cas/impl/JCasCoverClassFactoryTest.java | 123 +-
.../src/org/apache/uima/cas/impl/TypeImplList.java | 72 +-
.../src/org/apache/uima/cas/impl/TypeImplMap.java | 90 +-
.../impl/XXXdont_use_JCasCoverClassFactory.java | 1010 +--
.../impl/JCasCoverClassFactoryTest.java | 129 +-
.../util/ComparableIntPointerIterator.java | 94 +-
.../apache/uima/internal/util/Int2IntHashMap.java | 1034 +--
.../uima/internal/util/Int2IntHashMapTest.java | 179 +-
.../apache/uima/internal/util/Int2IntPerfTest.java | 310 +-
.../internal/util/UIMATypeSystemClassLoader.java | 308 +-
.../util/UIMATypeSystemClassLoaderInjector.java | 238 +-
.../org/apache/uima/jcas/cas/JavaObjectArray.java | 386 +-
.../src/org/apache/uima/jcas/impl/CASMetadata.java | 82 +-
.../uima/jcas/impl/JCasCoverClassFactory.java | 704 +-
.../uima/jcas/impl/JCasCoverClassFactoryTest.java | 122 +-
.../src/org/apache/uima/jcas/impl/JCasHashMap.java | 888 +--
.../uima/jcas/impl/JCasHashMapCompareTest.java | 400 +-
.../apache/uima/jcas/impl/JCasHashMapSubMap.java | 836 +-
.../org/apache/uima/jcas/impl/JCasHashMapTest.java | 945 +--
.../apache/uima/jcasgen/JCasClassDefinition.java | 134 +-
.../uima/jcasgen/impl/JCasClassConversion.java | 508 +-
.../uima/tools/jcas/internal/AnalyzeContent.java | 690 +-
.../uima/tools/jcasgen/DecompiledFilter.java | 312 +-
.../src/study/asm/decompiled/AnnotationDumpV3.java | 568 +-
3624 files changed, 232121 insertions(+), 130560 deletions(-)