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Posted to dev@airavata.apache.org by Bibrak Qamar <bi...@gmail.com> on 2019/05/14 05:54:54 UTC
Login failed: Could not connect to any of [('::1', 8962, 0, 0),
('127.0.0.1', 8962), ('fe80::1%lo0', 8962, 0, 1)]. Please try again.
Hi all,
So, I have managed to follow the ide-integration guide provided here:
https://github.com/apache/airavata/tree/develop/modules/ide-integration
When I login to the portal it shows the following error message:
Login failed: Could not connect to any of [('::1', 8962, 0, 0),
('127.0.0.1', 8962), ('fe80::1%lo0', 8962, 0, 1)]. Please try again.
I am also copying the output of my APIServerStarter. It seems it might have
issue?
What do you think could be the problem?
......:...::/Users/bibrakqamar/.m2/repository/javax/mail/mail/1.4.5/mail-1.4.5.jar
org.apache.airavata.ide.integration.APIServerStarter
objc[5362]: Class JavaLaunchHelper is implemented in both
/Library/Java/JavaVirtualMachines/jdk1.8.0_40.jdk/Contents/Home/bin/java
(0x108f324c0) and
/Library/Java/JavaVirtualMachines/jdk1.8.0_40.jdk/Contents/Home/jre/lib/libinstrument.dylib
(0x109f114e0). One of the two will be used. Which one is undefined.
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in
[jar:file:/Users/bibrakqamar/.m2/repository/ch/qos/logback/logback-classic/1.2.3/logback-classic-1.2.3.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in
[jar:file:/Users/bibrakqamar/.m2/repository/org/slf4j/slf4j-log4j12/1.7.25/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an
explanation.
01:48:39,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] -
Could NOT find resource [logback-test.xml]
01:48:39,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] -
Could NOT find resource [logback.groovy]
01:48:39,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] -
Found resource [logback.xml] at
[file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/logback.xml]
01:48:39,502 |-WARN in ch.qos.logback.classic.LoggerContext[default] -
Resource [logback.xml] occurs multiple times on the classpath.
01:48:39,509 |-WARN in ch.qos.logback.classic.LoggerContext[default] -
Resource [logback.xml] occurs at
[file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/configuration/server/target/classes/logback.xml]
01:48:39,509 |-WARN in ch.qos.logback.classic.LoggerContext[default] -
Resource [logback.xml] occurs at
[file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/airavata-helix/helix-spectator/target/classes/logback.xml]
01:48:39,509 |-WARN in ch.qos.logback.classic.LoggerContext[default] -
Resource [logback.xml] occurs at
[file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/job-monitor/email-monitor/target/classes/logback.xml]
01:48:39,509 |-WARN in ch.qos.logback.classic.LoggerContext[default] -
Resource [logback.xml] occurs at
[file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/logback.xml]
01:48:39,986 |-INFO in
ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute
not set
01:48:40,042 |-INFO in ch.qos.logback.core.joran.action.AppenderAction -
About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:48:40,094 |-INFO in ch.qos.logback.core.joran.action.AppenderAction -
Naming appender as [CONSOLE]
01:48:40,143 |-INFO in
ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default
type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder]
property
01:48:40,480 |-INFO in ch.qos.logback.core.joran.action.AppenderAction -
About to instantiate appender of type
[ch.qos.logback.core.rolling.RollingFileAppender]
01:48:40,493 |-INFO in ch.qos.logback.core.joran.action.AppenderAction -
Naming appender as [LOGFILE]
01:48:40,498 |-INFO in
ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default
type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder]
property
01:48:40,522 |-INFO in c.q.l.core.rolling.TimeBasedRollingPolicy@797925218
- setting totalSizeCap to 1 GB
01:48:40,543 |-INFO in c.q.l.core.rolling.TimeBasedRollingPolicy@797925218
- No compression will be used
01:48:40,553 |-INFO in c.q.l.core.rolling.TimeBasedRollingPolicy@797925218
- Will use the pattern ../logs/airavata.log.%d{yyyy-MM-dd} for the active
file
01:48:40,568 |-INFO in
c.q.l.core.rolling.DefaultTimeBasedFileNamingAndTriggeringPolicy - The date
pattern is 'yyyy-MM-dd' from file name pattern
'../logs/airavata.log.%d{yyyy-MM-dd}'.
01:48:40,568 |-INFO in
c.q.l.core.rolling.DefaultTimeBasedFileNamingAndTriggeringPolicy -
Roll-over at midnight.
01:48:40,569 |-INFO in
c.q.l.core.rolling.DefaultTimeBasedFileNamingAndTriggeringPolicy - Setting
initial period to Tue May 14 01:48:36 EDT 2019
01:48:40,581 |-INFO in
ch.qos.logback.core.rolling.RollingFileAppender[LOGFILE] - Active log file
name: ../logs/airavata.log
01:48:40,581 |-INFO in
ch.qos.logback.core.rolling.RollingFileAppender[LOGFILE] - File property is
set to [../logs/airavata.log]
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction -
Setting level of logger [ch.qos.logback] to WARN
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction -
Setting level of logger [org.apache.helix] to WARN
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction -
Setting level of logger [org.apache.zookeeper] to ERROR
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction -
Setting level of logger [org.apache.airavata] to INFO
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction -
Setting level of logger [org.hibernate] to ERROR
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.RootLoggerAction
- Setting level of ROOT logger to INFO
01:48:40,595 |-ERROR in ch.qos.logback.core.joran.action.AppenderRefAction
- Could not find an appender named [RELAXED-KAFKA-APPENDER]. Did you define
it below instead of above in the configuration file?
01:48:40,595 |-ERROR in ch.qos.logback.core.joran.action.AppenderRefAction
- See http://logback.qos.ch/codes.html#appender_order for more details.
01:48:40,595 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction -
Attaching appender named [CONSOLE] to Logger[ROOT]
01:48:40,597 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction -
Attaching appender named [LOGFILE] to Logger[ROOT]
01:48:40,597 |-INFO in
ch.qos.logback.classic.joran.action.ConfigurationAction - End of
configuration.
01:48:40,599 |-INFO in
ch.qos.logback.classic.joran.JoranConfigurator@1068e947 - Registering
current configuration as safe fallback point
SLF4J: Actual binding is of type
[ch.qos.logback.classic.util.ContextSelectorStaticBinder]
[INFO] Starting the DB Event Manager runner.
[INFO] Starting DB Event manager publisher
2019-05-14 01:48:41,151 [Thread-0] INFO
o.a.a.d.e.m.m.DBEventManagerMessagingFactory Creating DB Event
publisher..... []
2019-05-14 01:48:41,283 [Thread-0] INFO o.a.a.c.u.ApplicationSettings
Settings loaded from
file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/airavata-server.properties
[]
2019-05-14 01:48:41,496 [Thread-0] INFO o.a.a.m.c.i.RabbitMQPublisher
connected to rabbitmq: amqp://guest@127.0.0.1:5672develop for
db.event.exchange []
2019-05-14 01:48:41,496 [Thread-0] INFO
o.a.a.d.e.m.m.DBEventManagerMessagingFactory DB Event publisher created []
[INFO] Starting DB Event manager subscriber
2019-05-14 01:48:41,497 [Thread-0] INFO
o.a.a.d.e.m.m.DBEventManagerMessagingFactory Creating DB Event
subscriber..... []
2019-05-14 01:48:41,689 [Thread-0] INFO o.a.c.f.i.CuratorFrameworkImpl
Starting []
2019-05-14 01:48:41,906 [Thread-0] INFO o.a.a.m.c.i.RabbitMQSubscriber
connected to rabbitmq: amqp://guest@127.0.0.1:5672develop for
db.event.exchange []
2019-05-14 01:48:42,002 [Thread-0] INFO
o.a.a.d.e.m.m.DBEventManagerMessagingFactory DB Event subscriber created []
2019-05-14 01:48:42,045 [Thread-0-EventThread] INFO
o.a.c.f.s.ConnectionStateManager State change: CONNECTED []
2019-05-14 01:48:43,228 [main] INFO o.a.a.r.a.s.RegistryAPIServer
Initializing databases... []
2019-05-14 01:48:43,569 [main] INFO o.a.a.c.utils.DBInitializer Table
CONFIGURATION already exists. Skipping database init script
database_scripts/expcatalog []
36 experiment_data_new WARN [main] openjpa.Runtime - The persistence
unit "experiment_data_new" was found multiple times in the following
resources
"[file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/META-INF/persistence.xml,
file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/registry/registry-core/target/classes/META-INF/persistence.xml]",
but persistence unit names should be unique. The first persistence unit
matching the provided name in
"file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/META-INF/persistence.xml"
is being used.
756 experiment_data_new INFO [main] openjpa.Runtime - OpenJPA
dynamically loaded the class enhancer. Any classes that were not enhanced
at build time will be enhanced when they are loaded by the JVM.
791 experiment_data_new INFO [main] openjpa.Runtime - Starting OpenJPA
2.4.3
977 experiment_data_new INFO [main] openjpa.jdbc.JDBC - Using
dictionary class "org.apache.openjpa.jdbc.sql.MySQLDictionary" (MySQL
5.7.21 ,MariaDB connector/J 2.0.2).
1050 experiment_data_new INFO [main] openjpa.jdbc.JDBC - Connected to
MySQL version 5.5 using JDBC driver MariaDB connector/J version 2.0.2.
790 experiment_data_new WARN [main] openjpa.Runtime - Fields
"org.apache.airavata.registry.core.entities.expcatalog.ProcessEntity.emailAddresses"
are not a default persistent type, and do not have any annotations
indicating their persistence strategy. They will be treated as
non-persistent. If you intended for these fields to be persistent, be sure
to annotate them appropriately or declare them in orm.xml. Otherwise
annotate them with @Transient.
838 experiment_data_new WARN [main] openjpa.Runtime - Fields
"org.apache.airavata.registry.core.entities.expcatalog.ExperimentEntity.emailAddresses"
are not a default persistent type, and do not have any annotations
indicating their persistence strategy. They will be treated as
non-persistent. If you intended for these fields to be persistent, be sure
to annotate them appropriately or declare them in orm.xml. Otherwise
annotate them with @Transient.
1348 experiment_data_new WARN [main] openjpa.MetaData - The composite
identity class "class
org.apache.airavata.registry.core.entities.expcatalog.UserPK" for entity
"class org.apache.airavata.registry.core.entities.expcatalog.UserEntity" is
not serializable.
2091 experiment_data_new WARN [main] openjpa.Runtime - Fields
"org.apache.airavata.registry.core.entities.expcatalog.ExperimentEntity.emailAddresses"
are not a default persistent type, and do not have any annotations
indicating their persistence strategy. They will be treated as
non-persistent. If you intended for these fields to be persistent, be sure
to annotate them appropriately or declare them in orm.xml. Otherwise
annotate them with @Transient.
2145 experiment_data_new WARN [main] openjpa.Runtime - Fields
"org.apache.airavata.registry.core.entities.expcatalog.ProcessEntity.emailAddresses"
are not a default persistent type, and do not have any annotations
indicating their persistence strategy. They will be treated as
non-persistent. If you intended for these fields to be persistent, be sure
to annotate them appropriately or declare them in orm.xml. Otherwise
annotate them with @Transient.
2919 experiment_data_new WARN [main] openjpa.MetaData - The composite
identity class "class
org.apache.airavata.registry.core.entities.expcatalog.UserPK" for entity
"class org.apache.airavata.registry.core.entities.expcatalog.UserEntity" is
not serializable.
3238 experiment_data_new WARN [main] openjpa.Enhance - Unenhanced
classes were detected even though the enhancer has ran. Ensure that the
EntityManagerFactory is created prior to creating any Entities.
2019-05-14 01:48:47,788 [main] ERROR o.a.a.r.c.r.AbstractRepository Failed
to get EntityManager []
org.apache.openjpa.persistence.ArgumentException: This configuration
disallows runtime optimization, but the following listed types were not
enhanced at build time or at class load time with a javaagent: "
org.apache.airavata.registry.core.entities.expcatalog.ExperimentEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.UserEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ProjectEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessErrorEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessOutputEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentSummaryEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessEntity
org.apache.airavata.registry.core.entities.expcatalog.JobStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskErrorEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentOutputEntity
org.apache.airavata.registry.core.entities.expcatalog.NotificationEntity
org.apache.airavata.registry.core.entities.expcatalog.GatewayEntity
org.apache.airavata.registry.core.entities.expcatalog.JobEntity
org.apache.airavata.registry.core.entities.expcatalog.QueueStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentErrorEntity".
at
org.apache.openjpa.enhance.ManagedClassSubclasser.prepareUnenhancedClasses(ManagedClassSubclasser.java:115)
at
org.apache.openjpa.kernel.AbstractBrokerFactory.loadPersistentTypes(AbstractBrokerFactory.java:311)
at
org.apache.openjpa.kernel.AbstractBrokerFactory.initializeBroker(AbstractBrokerFactory.java:235)
at
org.apache.openjpa.kernel.AbstractBrokerFactory.newBroker(AbstractBrokerFactory.java:211)
at
org.apache.openjpa.kernel.DelegatingBrokerFactory.newBroker(DelegatingBrokerFactory.java:154)
at
org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:226)
at
org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:153)
at
org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:59)
at
org.apache.airavata.registry.core.utils.JPAUtil.ExpCatalogJPAUtils.getEntityManager(ExpCatalogJPAUtils.java:35)
at
org.apache.airavata.registry.core.repositories.expcatalog.ExpCatAbstractRepository.getEntityManager(ExpCatAbstractRepository.java:16)
at
org.apache.airavata.registry.core.repositories.AbstractRepository.execute(AbstractRepository.java:111)
at
org.apache.airavata.registry.core.repositories.AbstractRepository.get(AbstractRepository.java:67)
at
org.apache.airavata.registry.core.repositories.AbstractRepository.isExists(AbstractRepository.java:105)
at
org.apache.airavata.registry.core.repositories.expcatalog.GatewayRepository.isGatewayExist(GatewayRepository.java:99)
at
org.apache.airavata.registry.core.utils.ExpCatalogDBInitConfig.postInit(ExpCatalogDBInitConfig.java:62)
at
org.apache.airavata.common.utils.DBInitializer.initializeDB(DBInitializer.java:46)
at
org.apache.airavata.registry.api.service.RegistryAPIServer.StartRegistryServer(RegistryAPIServer.java:69)
at
org.apache.airavata.registry.api.service.RegistryAPIServer.start(RegistryAPIServer.java:151)
at
org.apache.airavata.ide.integration.APIServerStarter.main(APIServerStarter.java:23)
Exception in thread "main" java.lang.RuntimeException: Failed to
post-initialize the expcatalog database
at
org.apache.airavata.registry.core.utils.ExpCatalogDBInitConfig.postInit(ExpCatalogDBInitConfig.java:81)
at
org.apache.airavata.common.utils.DBInitializer.initializeDB(DBInitializer.java:46)
at
org.apache.airavata.registry.api.service.RegistryAPIServer.StartRegistryServer(RegistryAPIServer.java:69)
at
org.apache.airavata.registry.api.service.RegistryAPIServer.start(RegistryAPIServer.java:151)
at
org.apache.airavata.ide.integration.APIServerStarter.main(APIServerStarter.java:23)
Caused by: java.lang.RuntimeException: Failed to get EntityManager
at
org.apache.airavata.registry.core.repositories.AbstractRepository.execute(AbstractRepository.java:114)
at
org.apache.airavata.registry.core.repositories.AbstractRepository.get(AbstractRepository.java:67)
at
org.apache.airavata.registry.core.repositories.AbstractRepository.isExists(AbstractRepository.java:105)
at
org.apache.airavata.registry.core.repositories.expcatalog.GatewayRepository.isGatewayExist(GatewayRepository.java:99)
at
org.apache.airavata.registry.core.utils.ExpCatalogDBInitConfig.postInit(ExpCatalogDBInitConfig.java:62)
... 4 more
Caused by: <openjpa-2.4.3-r422266:1833086 nonfatal user error>
org.apache.openjpa.persistence.ArgumentException: This configuration
disallows runtime optimization, but the following listed types were not
enhanced at build time or at class load time with a javaagent: "
org.apache.airavata.registry.core.entities.expcatalog.ExperimentEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.UserEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ProjectEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessErrorEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessOutputEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentSummaryEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessEntity
org.apache.airavata.registry.core.entities.expcatalog.JobStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskErrorEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentOutputEntity
org.apache.airavata.registry.core.entities.expcatalog.NotificationEntity
org.apache.airavata.registry.core.entities.expcatalog.GatewayEntity
org.apache.airavata.registry.core.entities.expcatalog.JobEntity
org.apache.airavata.registry.core.entities.expcatalog.QueueStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentErrorEntity".
at
org.apache.openjpa.enhance.ManagedClassSubclasser.prepareUnenhancedClasses(ManagedClassSubclasser.java:115)
at
org.apache.openjpa.kernel.AbstractBrokerFactory.loadPersistentTypes(AbstractBrokerFactory.java:311)
at
org.apache.openjpa.kernel.AbstractBrokerFactory.initializeBroker(AbstractBrokerFactory.java:235)
at
org.apache.openjpa.kernel.AbstractBrokerFactory.newBroker(AbstractBrokerFactory.java:211)
at
org.apache.openjpa.kernel.DelegatingBrokerFactory.newBroker(DelegatingBrokerFactory.java:154)
at
org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:226)
at
org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:153)
at
org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:59)
at
org.apache.airavata.registry.core.utils.JPAUtil.ExpCatalogJPAUtils.getEntityManager(ExpCatalogJPAUtils.java:35)
at
org.apache.airavata.registry.core.repositories.expcatalog.ExpCatAbstractRepository.getEntityManager(ExpCatAbstractRepository.java:16)
at
org.apache.airavata.registry.core.repositories.AbstractRepository.execute(AbstractRepository.java:111)
... 8 more
Bibrak Qamar
Re: Login failed: Could not connect to any of [('::1', 8962, 0, 0),
('127.0.0.1', 8962), ('fe80::1%lo0', 8962, 0, 1)]. Please try again.
Posted by "Christie, Marcus Aaron" <ma...@iu.edu>.
Hi Bibrak,
This sounds similar to the problem Lahiru ran into [1]. See what Lahiru did, looks like Lahiru was able to work around it.
[1] https://markmail.org/thread/gh26dlze5evfx3vl
From: Bibrak Qamar <bi...@gmail.com>
Reply-To: "dev@airavata.apache.org" <de...@airavata.apache.org>
Date: Tuesday, May 14, 2019 at 1:55 AM
To: "dev@airavata.apache.org" <de...@airavata.apache.org>
Subject: Login failed: Could not connect to any of [('::1', 8962, 0, 0), ('127.0.0.1', 8962), ('fe80::1%lo0', 8962, 0, 1)]. Please try again.
Hi all,
So, I have managed to follow the ide-integration guide provided here: https://github.com/apache/airavata/tree/develop/modules/ide-integration
When I login to the portal it shows the following error message:
Login failed: Could not connect to any of [('::1', 8962, 0, 0), ('127.0.0.1', 8962), ('fe80::1%lo0', 8962, 0, 1)]. Please try again.
I am also copying the output of my APIServerStarter. It seems it might have issue?
What do you think could be the problem?
......:...::/Users/bibrakqamar/.m2/repository/javax/mail/mail/1.4.5/mail-1.4.5.jar org.apache.airavata.ide.integration.APIServerStarter
objc[5362]: Class JavaLaunchHelper is implemented in both /Library/Java/JavaVirtualMachines/jdk1.8.0_40.jdk/Contents/Home/bin/java (0x108f324c0) and /Library/Java/JavaVirtualMachines/jdk1.8.0_40.jdk/Contents/Home/jre/lib/libinstrument.dylib (0x109f114e0). One of the two will be used. Which one is undefined.
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/Users/bibrakqamar/.m2/repository/ch/qos/logback/logback-classic/1.2.3/logback-classic-1.2.3.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/Users/bibrakqamar/.m2/repository/org/slf4j/slf4j-log4j12/1.7.25/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
01:48:39,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:48:39,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy]
01:48:39,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/logback.xml]
01:48:39,502 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs multiple times on the classpath.
01:48:39,509 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/configuration/server/target/classes/logback.xml]
01:48:39,509 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/airavata-helix/helix-spectator/target/classes/logback.xml]
01:48:39,509 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/job-monitor/email-monitor/target/classes/logback.xml]
01:48:39,509 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/logback.xml]
01:48:39,986 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute not set
01:48:40,042 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:48:40,094 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [CONSOLE]
01:48:40,143 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:48:40,480 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.rolling.RollingFileAppender]
01:48:40,493 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [LOGFILE]
01:48:40,498 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:48:40,522 |-INFO in c.q.l.core.rolling.TimeBasedRollingPolicy@797925218 - setting totalSizeCap to 1 GB
01:48:40,543 |-INFO in c.q.l.core.rolling.TimeBasedRollingPolicy@797925218 - No compression will be used
01:48:40,553 |-INFO in c.q.l.core.rolling.TimeBasedRollingPolicy@797925218 - Will use the pattern ../logs/airavata.log.%d{yyyy-MM-dd} for the active file
01:48:40,568 |-INFO in c.q.l.core.rolling.DefaultTimeBasedFileNamingAndTriggeringPolicy - The date pattern is 'yyyy-MM-dd' from file name pattern '../logs/airavata.log.%d{yyyy-MM-dd}'.
01:48:40,568 |-INFO in c.q.l.core.rolling.DefaultTimeBasedFileNamingAndTriggeringPolicy - Roll-over at midnight.
01:48:40,569 |-INFO in c.q.l.core.rolling.DefaultTimeBasedFileNamingAndTriggeringPolicy - Setting initial period to Tue May 14 01:48:36 EDT 2019
01:48:40,581 |-INFO in ch.qos.logback.core.rolling.RollingFileAppender[LOGFILE] - Active log file name: ../logs/airavata.log
01:48:40,581 |-INFO in ch.qos.logback.core.rolling.RollingFileAppender[LOGFILE] - File property is set to [../logs/airavata.log]
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [ch.qos.logback] to WARN
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.apache.helix] to WARN
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.apache.zookeeper] to ERROR
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.apache.airavata] to INFO
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.hibernate] to ERROR
01:48:40,586 |-INFO in ch.qos.logback.classic.joran.action.RootLoggerAction - Setting level of ROOT logger to INFO
01:48:40,595 |-ERROR in ch.qos.logback.core.joran.action.AppenderRefAction - Could not find an appender named [RELAXED-KAFKA-APPENDER]. Did you define it below instead of above in the configuration file?
01:48:40,595 |-ERROR in ch.qos.logback.core.joran.action.AppenderRefAction - See http://logback.qos.ch/codes.html#appender_order for more details.
01:48:40,595 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [CONSOLE] to Logger[ROOT]
01:48:40,597 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [LOGFILE] to Logger[ROOT]
01:48:40,597 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration.
01:48:40,599 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1068e947 - Registering current configuration as safe fallback point
SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder]
[INFO] Starting the DB Event Manager runner.
[INFO] Starting DB Event manager publisher
2019-05-14 01:48:41,151 [Thread-0] INFO o.a.a.d.e.m.m.DBEventManagerMessagingFactory Creating DB Event publisher..... []
2019-05-14 01:48:41,283 [Thread-0] INFO o.a.a.c.u.ApplicationSettings Settings loaded from file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/airavata-server.properties []
2019-05-14 01:48:41,496 [Thread-0] INFO o.a.a.m.c.i.RabbitMQPublisher connected to rabbitmq: amqp://guest@127.0.0.1:5672develop for db.event.exchange []
2019-05-14 01:48:41,496 [Thread-0] INFO o.a.a.d.e.m.m.DBEventManagerMessagingFactory DB Event publisher created []
[INFO] Starting DB Event manager subscriber
2019-05-14 01:48:41,497 [Thread-0] INFO o.a.a.d.e.m.m.DBEventManagerMessagingFactory Creating DB Event subscriber..... []
2019-05-14 01:48:41,689 [Thread-0] INFO o.a.c.f.i.CuratorFrameworkImpl Starting []
2019-05-14 01:48:41,906 [Thread-0] INFO o.a.a.m.c.i.RabbitMQSubscriber connected to rabbitmq: amqp://guest@127.0.0.1:5672develop for db.event.exchange []
2019-05-14 01:48:42,002 [Thread-0] INFO o.a.a.d.e.m.m.DBEventManagerMessagingFactory DB Event subscriber created []
2019-05-14 01:48:42,045 [Thread-0-EventThread] INFO o.a.c.f.s.ConnectionStateManager State change: CONNECTED []
2019-05-14 01:48:43,228 [main] INFO o.a.a.r.a.s.RegistryAPIServer Initializing databases... []
2019-05-14 01:48:43,569 [main] INFO o.a.a.c.utils.DBInitializer Table CONFIGURATION already exists. Skipping database init script database_scripts/expcatalog []
36 experiment_data_new WARN [main] openjpa.Runtime - The persistence unit "experiment_data_new" was found multiple times in the following resources "[file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/META-INF/persistence.xml, file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/registry/registry-core/target/classes/META-INF/persistence.xml]", but persistence unit names should be unique. The first persistence unit matching the provided name in "file:/Users/bibrakqamar/work/GSoC/gitrops/airavata/modules/ide-integration/target/classes/META-INF/persistence.xml" is being used.
756 experiment_data_new INFO [main] openjpa.Runtime - OpenJPA dynamically loaded the class enhancer. Any classes that were not enhanced at build time will be enhanced when they are loaded by the JVM.
791 experiment_data_new INFO [main] openjpa.Runtime - Starting OpenJPA 2.4.3
977 experiment_data_new INFO [main] openjpa.jdbc.JDBC - Using dictionary class "org.apache.openjpa.jdbc.sql.MySQLDictionary" (MySQL 5.7.21 ,MariaDB connector/J 2.0.2).
1050 experiment_data_new INFO [main] openjpa.jdbc.JDBC - Connected to MySQL version 5.5 using JDBC driver MariaDB connector/J version 2.0.2.
790 experiment_data_new WARN [main] openjpa.Runtime - Fields "org.apache.airavata.registry.core.entities.expcatalog.ProcessEntity.emailAddresses" are not a default persistent type, and do not have any annotations indicating their persistence strategy. They will be treated as non-persistent. If you intended for these fields to be persistent, be sure to annotate them appropriately or declare them in orm.xml. Otherwise annotate them with @Transient.
838 experiment_data_new WARN [main] openjpa.Runtime - Fields "org.apache.airavata.registry.core.entities.expcatalog.ExperimentEntity.emailAddresses" are not a default persistent type, and do not have any annotations indicating their persistence strategy. They will be treated as non-persistent. If you intended for these fields to be persistent, be sure to annotate them appropriately or declare them in orm.xml. Otherwise annotate them with @Transient.
1348 experiment_data_new WARN [main] openjpa.MetaData - The composite identity class "class org.apache.airavata.registry.core.entities.expcatalog.UserPK" for entity "class org.apache.airavata.registry.core.entities.expcatalog.UserEntity" is not serializable.
2091 experiment_data_new WARN [main] openjpa.Runtime - Fields "org.apache.airavata.registry.core.entities.expcatalog.ExperimentEntity.emailAddresses" are not a default persistent type, and do not have any annotations indicating their persistence strategy. They will be treated as non-persistent. If you intended for these fields to be persistent, be sure to annotate them appropriately or declare them in orm.xml. Otherwise annotate them with @Transient.
2145 experiment_data_new WARN [main] openjpa.Runtime - Fields "org.apache.airavata.registry.core.entities.expcatalog.ProcessEntity.emailAddresses" are not a default persistent type, and do not have any annotations indicating their persistence strategy. They will be treated as non-persistent. If you intended for these fields to be persistent, be sure to annotate them appropriately or declare them in orm.xml. Otherwise annotate them with @Transient.
2919 experiment_data_new WARN [main] openjpa.MetaData - The composite identity class "class org.apache.airavata.registry.core.entities.expcatalog.UserPK" for entity "class org.apache.airavata.registry.core.entities.expcatalog.UserEntity" is not serializable.
3238 experiment_data_new WARN [main] openjpa.Enhance - Unenhanced classes were detected even though the enhancer has ran. Ensure that the EntityManagerFactory is created prior to creating any Entities.
2019-05-14 01:48:47,788 [main] ERROR o.a.a.r.c.r.AbstractRepository Failed to get EntityManager []
org.apache.openjpa.persistence.ArgumentException: This configuration disallows runtime optimization, but the following listed types were not enhanced at build time or at class load time with a javaagent: "
org.apache.airavata.registry.core.entities.expcatalog.ExperimentEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.UserEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ProjectEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessErrorEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessOutputEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentSummaryEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessEntity
org.apache.airavata.registry.core.entities.expcatalog.JobStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskErrorEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentOutputEntity
org.apache.airavata.registry.core.entities.expcatalog.NotificationEntity
org.apache.airavata.registry.core.entities.expcatalog.GatewayEntity
org.apache.airavata.registry.core.entities.expcatalog.JobEntity
org.apache.airavata.registry.core.entities.expcatalog.QueueStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentErrorEntity".
at org.apache.openjpa.enhance.ManagedClassSubclasser.prepareUnenhancedClasses(ManagedClassSubclasser.java:115)
at org.apache.openjpa.kernel.AbstractBrokerFactory.loadPersistentTypes(AbstractBrokerFactory.java:311)
at org.apache.openjpa.kernel.AbstractBrokerFactory.initializeBroker(AbstractBrokerFactory.java:235)
at org.apache.openjpa.kernel.AbstractBrokerFactory.newBroker(AbstractBrokerFactory.java:211)
at org.apache.openjpa.kernel.DelegatingBrokerFactory.newBroker(DelegatingBrokerFactory.java:154)
at org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:226)
at org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:153)
at org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:59)
at org.apache.airavata.registry.core.utils.JPAUtil.ExpCatalogJPAUtils.getEntityManager(ExpCatalogJPAUtils.java:35)
at org.apache.airavata.registry.core.repositories.expcatalog.ExpCatAbstractRepository.getEntityManager(ExpCatAbstractRepository.java:16)
at org.apache.airavata.registry.core.repositories.AbstractRepository.execute(AbstractRepository.java:111)
at org.apache.airavata.registry.core.repositories.AbstractRepository.get(AbstractRepository.java:67)
at org.apache.airavata.registry.core.repositories.AbstractRepository.isExists(AbstractRepository.java:105)
at org.apache.airavata.registry.core.repositories.expcatalog.GatewayRepository.isGatewayExist(GatewayRepository.java:99)
at org.apache.airavata.registry.core.utils.ExpCatalogDBInitConfig.postInit(ExpCatalogDBInitConfig.java:62)
at org.apache.airavata.common.utils.DBInitializer.initializeDB(DBInitializer.java:46)
at org.apache.airavata.registry.api.service.RegistryAPIServer.StartRegistryServer(RegistryAPIServer.java:69)
at org.apache.airavata.registry.api.service.RegistryAPIServer.start(RegistryAPIServer.java:151)
at org.apache.airavata.ide.integration.APIServerStarter.main(APIServerStarter.java:23)
Exception in thread "main" java.lang.RuntimeException: Failed to post-initialize the expcatalog database
at org.apache.airavata.registry.core.utils.ExpCatalogDBInitConfig.postInit(ExpCatalogDBInitConfig.java:81)
at org.apache.airavata.common.utils.DBInitializer.initializeDB(DBInitializer.java:46)
at org.apache.airavata.registry.api.service.RegistryAPIServer.StartRegistryServer(RegistryAPIServer.java:69)
at org.apache.airavata.registry.api.service.RegistryAPIServer.start(RegistryAPIServer.java:151)
at org.apache.airavata.ide.integration.APIServerStarter.main(APIServerStarter.java:23)
Caused by: java.lang.RuntimeException: Failed to get EntityManager
at org.apache.airavata.registry.core.repositories.AbstractRepository.execute(AbstractRepository.java:114)
at org.apache.airavata.registry.core.repositories.AbstractRepository.get(AbstractRepository.java:67)
at org.apache.airavata.registry.core.repositories.AbstractRepository.isExists(AbstractRepository.java:105)
at org.apache.airavata.registry.core.repositories.expcatalog.GatewayRepository.isGatewayExist(GatewayRepository.java:99)
at org.apache.airavata.registry.core.utils.ExpCatalogDBInitConfig.postInit(ExpCatalogDBInitConfig.java:62)
... 4 more
Caused by: <openjpa-2.4.3-r422266:1833086 nonfatal user error> org.apache.openjpa.persistence.ArgumentException: This configuration disallows runtime optimization, but the following listed types were not enhanced at build time or at class load time with a javaagent: "
org.apache.airavata.registry.core.entities.expcatalog.ExperimentEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.UserEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ProjectEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessErrorEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessOutputEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentSummaryEntity
org.apache.airavata.registry.core.entities.expcatalog.ProcessEntity
org.apache.airavata.registry.core.entities.expcatalog.JobStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.TaskErrorEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentOutputEntity
org.apache.airavata.registry.core.entities.expcatalog.NotificationEntity
org.apache.airavata.registry.core.entities.expcatalog.GatewayEntity
org.apache.airavata.registry.core.entities.expcatalog.JobEntity
org.apache.airavata.registry.core.entities.expcatalog.QueueStatusEntity
org.apache.airavata.registry.core.entities.expcatalog.ExperimentErrorEntity".
at org.apache.openjpa.enhance.ManagedClassSubclasser.prepareUnenhancedClasses(ManagedClassSubclasser.java:115)
at org.apache.openjpa.kernel.AbstractBrokerFactory.loadPersistentTypes(AbstractBrokerFactory.java:311)
at org.apache.openjpa.kernel.AbstractBrokerFactory.initializeBroker(AbstractBrokerFactory.java:235)
at org.apache.openjpa.kernel.AbstractBrokerFactory.newBroker(AbstractBrokerFactory.java:211)
at org.apache.openjpa.kernel.DelegatingBrokerFactory.newBroker(DelegatingBrokerFactory.java:154)
at org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:226)
at org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:153)
at org.apache.openjpa.persistence.EntityManagerFactoryImpl.createEntityManager(EntityManagerFactoryImpl.java:59)
at org.apache.airavata.registry.core.utils.JPAUtil.ExpCatalogJPAUtils.getEntityManager(ExpCatalogJPAUtils.java:35)
at org.apache.airavata.registry.core.repositories.expcatalog.ExpCatAbstractRepository.getEntityManager(ExpCatAbstractRepository.java:16)
at org.apache.airavata.registry.core.repositories.AbstractRepository.execute(AbstractRepository.java:111)
... 8 more
Bibrak Qamar