[jira] [Created] (ARROW-2269) Cannot build bdist_wheel for Python

["Mitar (JIRA)" <ji...@apache.org>]

Mitar created ARROW-2269:
----------------------------

             Summary: Cannot build bdist_wheel for Python
                 Key: ARROW-2269
                 URL: https://issues.apache.org/jira/browse/ARROW-2269
             Project: Apache Arrow
          Issue Type: Bug
          Components: Packaging
    Affects Versions: 0.9.0
            Reporter: Mitar


I am trying current master.

I ran:

{{python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-parquet --with-plasma --bundle-arrow-cpp bdist_wheel }}

Output:

{{running build_ext creating build creating build/temp.linux-x86_64-3.6 -- Runnning cmake for pyarrow cmake -DPYTHON_EXECUTABLE=.../Temp/arrow/pyarrow/bin/python -DPYARROW_BUILD_PARQUET=on -DPYARROW_BOOST_USE_SHARED=on -DPYARROW_BUILD_PLASMA=on -DPYARROW_BUNDLE_ARROW_CPP=ON -DCMAKE_BUILD_TYPE=release .../Temp/arrow/arrow/python -- The C compiler identification is GNU 7.2.0 -- The CXX compiler identification is GNU 7.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done INFOCompiler command: /usr/bin/c++ INFOCompiler version: Using built-in specs. COLLECT_GCC=/usr/bin/c++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.2.0-8ubuntu3.2' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 7.2.0 (Ubuntu 7.2.0-8ubuntu3.2) INFOCompiler id: GNU Selected compiler gcc 7.2.0 -- Performing Test CXX_SUPPORTS_SSE3 -- Performing Test CXX_SUPPORTS_SSE3 - Success -- Performing Test CXX_SUPPORTS_ALTIVEC -- Performing Test CXX_SUPPORTS_ALTIVEC - Failed Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE=\{release,debug,...}) -- Build Type: RELEASE -- Build output directory: .../Temp/arrow/arrow/python/build/temp.linux-x86_64-3.6/release/ -- Found PythonInterp: .../Temp/arrow/pyarrow/bin/python (found version "3.6.3") -- Searching for Python libs in .../Temp/arrow/pyarrow/lib64;.../Temp/arrow/pyarrow/lib;/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu -- Looking for python3.6m -- Found Python lib /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so -- Found PythonLibs: /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so -- Found NumPy: version "1.14.1" .../Temp/arrow/pyarrow/lib/python3.6/site-packages/numpy/core/include -- Searching for Python libs in .../Temp/arrow/pyarrow/lib64;.../Temp/arrow/pyarrow/lib;/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu -- Looking for python3.6m -- Found Python lib /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'arrow' -- Found arrow, version 0.9.0-SNAPSHOT -- Arrow ABI version: 0.0.0 -- Arrow SO version: 0 -- Found the Arrow core library: .../Temp/arrow/dist/lib/libarrow.so -- Found the Arrow Python library: .../Temp/arrow/dist/lib/libarrow_python.so -- Boost version: 1.63.0 -- Found the following Boost libraries: -- system -- filesystem -- regex Added shared library dependency arrow: .../Temp/arrow/dist/lib/libarrow.so Added shared library dependency arrow_python: .../Temp/arrow/dist/lib/libarrow_python.so -- Found the Parquet library: .../Temp/arrow/dist/lib/libparquet.so Added shared library dependency parquet: .../Temp/arrow/dist/lib/libparquet.so -- Checking for module 'plasma' -- Found plasma, version -- Plasma ABI version: 0.0.0 -- Plasma SO version: 0 -- Found the Plasma core library: .../Temp/arrow/dist/lib/libplasma.so -- Found Plasma executable: .../Temp/arrow/dist/bin/plasma_store Added shared library dependency libplasma: .../Temp/arrow/dist/lib/libplasma.so -- Configuring done -- Generating done -- Build files have been written to: .../Temp/arrow/arrow/python/build/temp.linux-x86_64-3.6 -- Finished cmake for pyarrow -- Running cmake --build for pyarrow make Scanning dependencies of target lib_pyx [ 11%] Compiling Cython CXX source for lib... [ 11%] Built target lib_pyx Scanning dependencies of target lib [ 22%] Building CXX object CMakeFiles/lib.dir/lib.cxx.o [ 33%] Linking CXX shared module release/lib.cpython-36m-x86_64-linux-gnu.so [ 33%] Built target lib Scanning dependencies of target _parquet_pyx [ 44%] Compiling Cython CXX source for _parquet... [ 44%] Built target _parquet_pyx Scanning dependencies of target _parquet [ 55%] Building CXX object CMakeFiles/_parquet.dir/_parquet.cxx.o [ 66%] Linking CXX shared module release/_parquet.cpython-36m-x86_64-linux-gnu.so [ 66%] Built target _parquet Scanning dependencies of target plasma_pyx [ 77%] Compiling Cython CXX source for plasma... [ 77%] Built target plasma_pyx Scanning dependencies of target plasma [ 88%] Building CXX object CMakeFiles/plasma.dir/plasma.cxx.o [100%] Linking CXX shared module release/plasma.cpython-36m-x86_64-linux-gnu.so [100%] Built target plasma -- Finished cmake --build for pyarrow .../Temp/arrow/arrow/python/build/lib.linux-x86_64-3.6/pyarrow ['release/libarrow.so.0.0.0', 'release/libarrow.so.0', 'release/libarrow.so'] release/libarrow.so.0.0.0 ['release/libarrow_python.so.0.0.0', 'release/libarrow_python.so.0', 'release/libarrow_python.so'] release/libarrow_python.so.0.0.0 ['release/libplasma.so.0.0.0', 'release/libplasma.so.0', 'release/libplasma.so'] release/libplasma.so.0.0.0 ['release/libparquet.so.1.3.2', 'release/libparquet.so.1', 'release/libparquet.so'] release/libparquet.so.1.3.2 }}{{}}

And after that it crashes because it cannot find {{arrow_boost_filesystem}} in {{build_prefix}} in {{_move_shared_libs_unix}} call which makes {{libs}} variable there empty.

If I do:

{{$ find . -name *.so ./build/lib.linux-x86_64-3.6/pyarrow/libparquet.so ./build/lib.linux-x86_64-3.6/pyarrow/libplasma.so ./build/lib.linux-x86_64-3.6/pyarrow/libarrow.so ./build/lib.linux-x86_64-3.6/pyarrow/libarrow_python.so ./build/temp.linux-x86_64-3.6/release/_parquet.cpython-36m-x86_64-linux-gnu.so ./build/temp.linux-x86_64-3.6/release/libparquet.so ./build/temp.linux-x86_64-3.6/release/libboost_filesystem.so ./build/temp.linux-x86_64-3.6/release/libplasma.so ./build/temp.linux-x86_64-3.6/release/libarrow.so ./build/temp.linux-x86_64-3.6/release/libboost_system.so ./build/temp.linux-x86_64-3.6/release/lib.cpython-36m-x86_64-linux-gnu.so ./build/temp.linux-x86_64-3.6/release/libboost_regex.so ./build/temp.linux-x86_64-3.6/release/libarrow_python.so ./build/temp.linux-x86_64-3.6/release/plasma.cpython-36m-x86_64-linux-gnu.so ./pyarrow/_parquet.cpython-36m-x86_64-linux-gnu.so ./pyarrow/lib.cpython-36m-x86_64-linux-gnu.so ./pyarrow/plasma.cpython-36m-x86_64-linux-gnu.so }}{{}}

So it seems the issue is that the filename is {{libboost_filesystem.so}}, but it is trying to move {{libarrow_boost_filesystem.so}}?

Changing lines in {{setup.py}} to:

{{ move_shared_libs(build_prefix, build_lib, "boost_filesystem") move_shared_libs(build_prefix, build_lib, "boost_system") move_shared_libs(build_prefix, build_lib, "boost_regex") }}

seems to make it build.



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