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Posted to user@ignite.apache.org by mahesh76private <ma...@gmail.com> on 2019/02/06 09:14:26 UTC

2.7.0 ML: blas NoClassDefFoundError exception

Hi, 

How do I need to install BLAS libraries on Server node side?
Should I just place then in libs folder?

THe below error occurs when I run the test examples.



Caused by: java.lang.NoClassDefFoundError: org/netlib/blas/Dnrm2
	at com.github.fommil.netlib.F2jBLAS.dnrm2(F2jBLAS.java:121)
	at
org.apache.ignite.ml.math.isolve.lsqr.LSQROnHeap.lambda$bnorm$7b55d622$1(LSQROnHeap.java:53)
	at
org.apache.ignite.ml.dataset.Dataset.lambda$computeWithCtx$96d91738$1(Dataset.java:143)
	at
org.apache.ignite.ml.dataset.impl.cache.CacheBasedDataset.lambda$computeWithCtx$62946a87$1(CacheBasedDataset.java:112)
	at
org.apache.ignite.ml.dataset.impl.cache.util.ComputeUtils.lambda$affinityCallWithRetries$b46c4136$1(ComputeUtils.java:90)
	at
org.apache.ignite.internal.processors.closure.GridClosureProcessor$C2.execute(GridClosureProcessor.java:1855)
	at
org.apache.ignite.internal.processors.job.GridJobWorker$2.call(GridJobWorker.java:568)
	at
org.apache.ignite.internal.util.IgniteUtils.wrapThreadLoader(IgniteUtils.java:6816)
	at
org.apache.ignite.internal.processors.job.GridJobWorker.execute0(GridJobWorker.java:562)
	... 11 more



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Re: 2.7.0 ML: blas NoClassDefFoundError exception

Posted by Алексей Платонов <ap...@gmail.com>.

Hi,
It seems to be that Ignite modules are configured with excluding transitive
dependencies.
I see it in parent/pom.xml in configuration of maven-dependency-plugin
section (excludeTransitive=true).
If I override this section in child modules like ignite-ml these
dependencies will be added.

I created ticket for this problem:
https://issues.apache.org/jira/browse/IGNITE-11241

Best regards,
Alexey Platonov

чт, 7 февр. 2019 г. в 06:43, mahesh76private <ma...@gmail.com>:

> Hi,
>
> My understanding till date is that we need to move ignite-ml FOLDER from
> optional into libs.
>
>
> anyways, I also moved JARS straight away
> "libs/optional/ignite-ml/*.jar" into "libs". core1.1.2.jar, which seems to
> have the BLAS class also exists.
>
> I still get the same error..
>
>
> Caused by: java.lang.NoClassDefFoundError: org/netlib/blas/Dnrm2
>         at com.github.fommil.netlib.F2jBLAS.dnrm2(F2jBLAS.java:121)
>         at
>
> org.apache.ignite.ml.math.isolve.lsqr.LSQROnHeap.lambda$bnorm$7b55d622$1(LSQROnHeap.java:53)
>         at
>
> org.apache.ignite.ml.dataset.Dataset.lambda$computeWithCtx$96d91738$1(Dataset.java:143)
>         at
>
> org.apache.ignite.ml.dataset.impl.cache.CacheBasedDataset.lambda$computeWithCtx$62946a87$1(CacheBasedDataset.java:112)
>         at
>
> org.apache.ignite.ml.dataset.impl.cache.util.ComputeUtils.lambda$affinityCallWithRetries$b46c4136$1(ComputeUtils.java:90)
>         at
>
> org.apache.ignite.internal.processors.closure.GridClosureProcessor$C2.execute(GridClosureProcessor.java:1855)
>         at
>
> org.apache.ignite.internal.processors.job.GridJobWorker$2.call(GridJobWorker.java:568)
>         at
>
> org.apache.ignite.internal.util.IgniteUtils.wrapThreadLoader(IgniteUtils.java:6816)
>         at
>
> org.apache.ignite.internal.processors.job.GridJobWorker.execute0(GridJobWorker.java:562)
>         ... 11 more
>
>
>
> --
> Sent from: http://apache-ignite-users.70518.x6.nabble.com/
>

Re: 2.7.0 ML: blas NoClassDefFoundError exception

Posted by mahesh76private <ma...@gmail.com>.

Hi, 

My understanding till date is that we need to move ignite-ml FOLDER from
optional into libs. 


anyways, I also moved JARS straight away
"libs/optional/ignite-ml/*.jar" into "libs". core1.1.2.jar, which seems to
have the BLAS class also exists. 

I still get the same error..


Caused by: java.lang.NoClassDefFoundError: org/netlib/blas/Dnrm2
	at com.github.fommil.netlib.F2jBLAS.dnrm2(F2jBLAS.java:121)
	at
org.apache.ignite.ml.math.isolve.lsqr.LSQROnHeap.lambda$bnorm$7b55d622$1(LSQROnHeap.java:53)
	at
org.apache.ignite.ml.dataset.Dataset.lambda$computeWithCtx$96d91738$1(Dataset.java:143)
	at
org.apache.ignite.ml.dataset.impl.cache.CacheBasedDataset.lambda$computeWithCtx$62946a87$1(CacheBasedDataset.java:112)
	at
org.apache.ignite.ml.dataset.impl.cache.util.ComputeUtils.lambda$affinityCallWithRetries$b46c4136$1(ComputeUtils.java:90)
	at
org.apache.ignite.internal.processors.closure.GridClosureProcessor$C2.execute(GridClosureProcessor.java:1855)
	at
org.apache.ignite.internal.processors.job.GridJobWorker$2.call(GridJobWorker.java:568)
	at
org.apache.ignite.internal.util.IgniteUtils.wrapThreadLoader(IgniteUtils.java:6816)
	at
org.apache.ignite.internal.processors.job.GridJobWorker.execute0(GridJobWorker.java:562)
	... 11 more



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Re: 2.7.0 ML: blas NoClassDefFoundError exception

Posted by dmitrievanthony <dm...@gmail.com>.

Hi,

I guess you just haven't ML dependencies on the server node. It works fine
for most of Ignite ML classes because of peer-class-loading, but not for
third-party dependencies. If you work with Ignite binaries you could just
copy all jars from "libs/optional/ignite-ml/*.jar" into "libs".

Best regards,
Anton Dmitriev.



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