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Posted to commits@ctakes.apache.org by ch...@apache.org on 2012/09/20 18:07:33 UTC
svn commit: r1388092 [21/22] - in /incubator/ctakes/trunk: ./
ctakes-chunker/ ctakes-chunker/desc/
ctakes-chunker/scripts/groovy/data/chunk/
ctakes-chunker/scripts/java/data/chunk/
ctakes-chunker/scripts/java/data/chunk/genia/ ctakes-chunker/src/main/j...
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/NonsmokerDictionaryLookupAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/NonsmokerDictionaryLookupAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/NonsmokerDictionaryLookupAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/NonsmokerDictionaryLookupAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>true</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/PcsClassifierAnnotator_libsvm.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/PcsClassifierAnnotator_libsvm.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/PcsClassifierAnnotator_libsvm.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/PcsClassifierAnnotator_libsvm.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>true</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step1.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step1.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step1.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step1.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>false</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>false</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ResolutionAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ResolutionAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ResolutionAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ResolutionAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>true</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/Sentence.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/Sentence.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/Sentence.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/Sentence.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
<name>Sentence</name>
<description></description>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceAdjuster.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceAdjuster.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceAdjuster.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceAdjuster.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.watson.ibm.com/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>true</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SentenceDetectorAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>true</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>false</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE_CDA.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE_CDA.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE_CDA.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE_CDA.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>false</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SmokingStatusDictionaryLookupAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SmokingStatusDictionaryLookupAnnotator.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SmokingStatusDictionaryLookupAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/SmokingStatusDictionaryLookupAnnotator.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>true</primitive>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/cas_consumer/RecordResolutionCasConsumer.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/cas_consumer/RecordResolutionCasConsumer.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/cas_consumer/RecordResolutionCasConsumer.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/cas_consumer/RecordResolutionCasConsumer.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<casConsumerDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<implementationName>edu.mayo.bmi.smoking.cc.RecordResolutionCasConsumer</implementationName>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<collectionReader>
<collectionIterator>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
<collectionReader>
<collectionIterator>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/I2b2TypeSystem.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/I2b2TypeSystem.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/I2b2TypeSystem.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/I2b2TypeSystem.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
<name>I2B2TypeSystem</name>
<description></description>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/LibSVMTypeSystem.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/LibSVMTypeSystem.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/LibSVMTypeSystem.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/LibSVMTypeSystem.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
<name>LibSVM Type System</name>
<description></description>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/SmokingProductionTypeSystem.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/SmokingProductionTypeSystem.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/SmokingProductionTypeSystem.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/desc/type_system/SmokingProductionTypeSystem.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
<name>SmokingProductionTypeSystem</name>
<description/>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/metadata/PEAR.properties
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/metadata/PEAR.properties?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/metadata/PEAR.properties (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/metadata/PEAR.properties Thu Sep 20 16:07:04 2012
@@ -1,3 +1,22 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
#smoking status
#Tue Dec 21 12:37:17 CST 2010
#$main_root=/Users/m039575/Documents/ctakes_workspace/smoking status
Modified: incubator/ctakes/trunk/ctakes-smoking-status/metadata/install.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/metadata/install.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/metadata/install.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/metadata/install.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<COMPONENT_INSTALLATION_DESCRIPTOR>
<OS>
<NAME>Windows and Linux</NAME>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/resources/ss/data/SmokingStatusLookupConfig.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/resources/ss/data/SmokingStatusLookupConfig.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/resources/ss/data/SmokingStatusLookupConfig.xml (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/resources/ss/data/SmokingStatusLookupConfig.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<lookupSpecification>
<!-- Defines what Gazetteers will be used in terms of implementation specifics and metaField configuration. -->
<dictionaries>
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/fsm/smoking/machine/NegationFSM.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/fsm/smoking/machine/NegationFSM.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/fsm/smoking/machine/NegationFSM.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/fsm/smoking/machine/NegationFSM.java Thu Sep 20 16:07:04 2012
@@ -1,26 +1,21 @@
-/*
- * Copyright: (c) 2009 Mayo Foundation for Medical Education and
- * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the
- * triple-shield Mayo logo are trademarks and service marks of MFMER.
- *
- * Except as contained in the copyright notice above, or as used to identify
- * MFMER as the author of this software, the trade names, trademarks, service
- * marks, or product names of the copyright holder shall not be used in
- * advertising, promotion or otherwise in connection with this software without
- * prior written authorization of the copyright holder.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.fsm.smoking.machine;
import java.util.HashMap;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/Const.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/Const.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/Const.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/Const.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking;
/**
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/MLutil/GenerateTrainingData.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/MLutil/GenerateTrainingData.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/MLutil/GenerateTrainingData.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/MLutil/GenerateTrainingData.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.MLutil;
import java.io.BufferedReader;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/ClassifiableEntries.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/ClassifiableEntries.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/ClassifiableEntries.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/ClassifiableEntries.java Thu Sep 20 16:07:04 2012
@@ -1,4 +1,22 @@
/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+/**
*
*/
package edu.mayo.bmi.smoking.ae;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/KuRuleBasedClassifierAnnotator.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/KuRuleBasedClassifierAnnotator.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/KuRuleBasedClassifierAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/KuRuleBasedClassifierAnnotator.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.ae;
import java.io.BufferedReader;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/PcsClassifierAnnotator_libsvm.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/PcsClassifierAnnotator_libsvm.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/PcsClassifierAnnotator_libsvm.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/PcsClassifierAnnotator_libsvm.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.ae;
import java.io.BufferedReader;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/ResolutionAnnotator.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/ResolutionAnnotator.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/ResolutionAnnotator.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/ResolutionAnnotator.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.ae;
import java.io.BufferedReader;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/SentenceAdjuster.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/SentenceAdjuster.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/SentenceAdjuster.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/ae/SentenceAdjuster.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.ae;
import java.util.HashMap;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/cc/RecordResolutionCasConsumer.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/cc/RecordResolutionCasConsumer.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/cc/RecordResolutionCasConsumer.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/cc/RecordResolutionCasConsumer.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.cc;
import java.io.BufferedWriter;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/context/NamedEntityContextAnalyzer.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/context/NamedEntityContextAnalyzer.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/context/NamedEntityContextAnalyzer.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/context/NamedEntityContextAnalyzer.java Thu Sep 20 16:07:04 2012
@@ -1,26 +1,21 @@
-/*
- * Copyright: (c) 2009 Mayo Foundation for Medical Education and
- * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the
- * triple-shield Mayo logo are trademarks and service marks of MFMER.
- *
- * Except as contained in the copyright notice above, or as used to identify
- * MFMER as the author of this software, the trade names, trademarks, service
- * marks, or product names of the copyright holder shall not be used in
- * advertising, promotion or otherwise in connection with this software without
- * prior written authorization of the copyright holder.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.context;
import java.util.ArrayList;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/context/negation/NegationContextAnalyzer.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/context/negation/NegationContextAnalyzer.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/context/negation/NegationContextAnalyzer.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/context/negation/NegationContextAnalyzer.java Thu Sep 20 16:07:04 2012
@@ -1,26 +1,21 @@
-/*
- * Copyright: (c) 2009 Mayo Foundation for Medical Education and
- * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the
- * triple-shield Mayo logo are trademarks and service marks of MFMER.
- *
- * Except as contained in the copyright notice above, or as used to identify
- * MFMER as the author of this software, the trade names, trademarks, service
- * marks, or product names of the copyright holder shall not be used in
- * advertising, promotion or otherwise in connection with this software without
- * prior written authorization of the copyright holder.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.context.negation;
import java.util.List;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/patientLevel/PatientLevelSmokingStatus.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/patientLevel/PatientLevelSmokingStatus.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/patientLevel/PatientLevelSmokingStatus.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/patientLevel/PatientLevelSmokingStatus.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.patientLevel;
import java.io.BufferedReader;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/util/ClassifiableEntry.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/util/ClassifiableEntry.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/util/ClassifiableEntry.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/util/ClassifiableEntry.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.util;
public class ClassifiableEntry
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/util/TruthValue.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/util/TruthValue.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/util/TruthValue.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/smoking/util/TruthValue.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.smoking.util;
import java.util.List;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/NonSmokerNamedEntityLookupConsumerImpl.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/NonSmokerNamedEntityLookupConsumerImpl.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/NonSmokerNamedEntityLookupConsumerImpl.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/NonSmokerNamedEntityLookupConsumerImpl.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.uima.lookup.ae;
import java.util.Collection;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/SmokerNamedEntityLookupConsumerImpl.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/SmokerNamedEntityLookupConsumerImpl.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/SmokerNamedEntityLookupConsumerImpl.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/SmokerNamedEntityLookupConsumerImpl.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.uima.lookup.ae;
import java.util.Collection;
Modified: incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/UnknownSmokerNamedEntityLookupConsumerImpl.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/UnknownSmokerNamedEntityLookupConsumerImpl.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/UnknownSmokerNamedEntityLookupConsumerImpl.java (original)
+++ incubator/ctakes/trunk/ctakes-smoking-status/src/main/java/edu/mayo/bmi/uima/lookup/ae/UnknownSmokerNamedEntityLookupConsumerImpl.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package edu.mayo.bmi.uima.lookup.ae;
import java.util.Collection;
Modified: incubator/ctakes/trunk/ctakes-type-system/.classpath
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/.classpath?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/.classpath (original)
+++ incubator/ctakes/trunk/ctakes-type-system/.classpath Thu Sep 20 16:07:04 2012
@@ -1,33 +1,13 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
- <classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/UIMA"/>
- <classpathentry kind="src" output="target/classes" path="target/generated-sources/jcasgen">
- <attributes>
- <attribute name="optional" value="true"/>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="src" output="target/classes" path="src/main/java">
- <attributes>
- <attribute name="optional" value="true"/>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="src" output="target/test-classes" path="src/test/java">
- <attributes>
- <attribute name="optional" value="true"/>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
- <attributes>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
- <attributes>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="output" path="target/classes"/>
-</classpath>
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+ <classpathentry kind="src" output="target/classes" path="src/main/java"/>
+ <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
+ <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER"/>
+ <classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/UIMA"/>
+ <classpathentry kind="src" output="target/classes" path="target/generated-sources/jcasgen">
+ <attributes>
+ <attribute name="optional" value="true"/>
+ </attributes>
+ </classpathentry>
+ <classpathentry kind="output" path="target/classes"/>
+</classpath>
Modified: incubator/ctakes/trunk/ctakes-type-system/desc/common_type_system.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/desc/common_type_system.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/desc/common_type_system.xml (original)
+++ incubator/ctakes/trunk/ctakes-type-system/desc/common_type_system.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
<name>SHARPCommonTypeSystem</name>
<description>This is a Common Type System for SHARP NLP. It includes general types necessary to store annotations and interface with clinical element models</description>
Modified: incubator/ctakes/trunk/ctakes-type-system/metadata/install.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/metadata/install.xml?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/metadata/install.xml (original)
+++ incubator/ctakes/trunk/ctakes-type-system/metadata/install.xml Thu Sep 20 16:07:04 2012
@@ -1,4 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
<COMPONENT_INSTALLATION_DESCRIPTOR>
<OS>
</OS>
Modified: incubator/ctakes/trunk/ctakes-type-system/src/main/java/edu/mayo/bmi/uima/core/type/constants/CONST.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/src/main/java/edu/mayo/bmi/uima/core/type/constants/CONST.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/src/main/java/edu/mayo/bmi/uima/core/type/constants/CONST.java (original)
+++ incubator/ctakes/trunk/ctakes-type-system/src/main/java/edu/mayo/bmi/uima/core/type/constants/CONST.java Thu Sep 20 16:07:04 2012
@@ -1,25 +1,20 @@
-/*
- * Copyright: (c) 2012 Mayo Foundation for Medical Education and
- * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the
- * triple-shield Mayo logo are trademarks and service marks of MFMER.
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
*
- * Except as contained in the copyright notice above, or as used to identify
- * MFMER as the author of this software, the trade names, trademarks, service
- * marks, or product names of the copyright holder shall not be used in
- * advertising, promotion or otherwise in connection with this software without
- * prior written authorization of the copyright holder.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
*/
package edu.mayo.bmi.uima.core.type.constants;
/**
Modified: incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/Kernel.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/Kernel.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/Kernel.java (original)
+++ incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/Kernel.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package org.chboston.cnlp.ctakes.kernel;
import libsvm.svm_node;
Modified: incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/LinearKernel.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/LinearKernel.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/LinearKernel.java (original)
+++ incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/LinearKernel.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package org.chboston.cnlp.ctakes.kernel;
public class LinearKernel extends PolyKernel{
Modified: incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/PolyKernel.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/PolyKernel.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/PolyKernel.java (original)
+++ incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/PolyKernel.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package org.chboston.cnlp.ctakes.kernel;
import java.util.concurrent.ConcurrentHashMap;
Modified: incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/RBFKernel.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/RBFKernel.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/RBFKernel.java (original)
+++ incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/ctakes/kernel/RBFKernel.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package org.chboston.cnlp.ctakes.kernel;
import libsvm.svm_node;
Modified: incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/util/FragmentUtils.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/util/FragmentUtils.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/util/FragmentUtils.java (original)
+++ incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/util/FragmentUtils.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package org.chboston.cnlp.util;
public class FragmentUtils {
Modified: incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/util/SimpleTree.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/util/SimpleTree.java?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/util/SimpleTree.java (original)
+++ incubator/ctakes/trunk/ctakes-type-system/src/main/java/org/chboston/cnlp/util/SimpleTree.java Thu Sep 20 16:07:04 2012
@@ -1,3 +1,21 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
package org.chboston.cnlp.util;
import java.util.ArrayList;
Modified: incubator/ctakes/trunk/ctakes-utils/.classpath
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-utils/.classpath?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-utils/.classpath (original)
+++ incubator/ctakes/trunk/ctakes-utils/.classpath Thu Sep 20 16:07:04 2012
@@ -1,27 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
- <classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/UIMA"/>
- <classpathentry kind="src" output="target/classes" path="src/main/java">
- <attributes>
- <attribute name="optional" value="true"/>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="src" output="target/test-classes" path="src/test/java">
- <attributes>
- <attribute name="optional" value="true"/>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
- <attributes>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
- <attributes>
- <attribute name="maven.pomderived" value="true"/>
- </attributes>
- </classpathentry>
- <classpathentry kind="output" path="target/classes"/>
-</classpath>
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+ <classpathentry kind="src" output="target/classes" path="src/main/java"/>
+ <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
+ <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER"/>
+ <classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/UIMA"/>
+ <classpathentry kind="output" path="target/classes"/>
+</classpath>
Modified: incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/copyKnowtatorFiles.bat
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/copyKnowtatorFiles.bat?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/copyKnowtatorFiles.bat (original)
+++ incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/copyKnowtatorFiles.bat Thu Sep 20 16:07:04 2012
@@ -1,3 +1,22 @@
+@REM
+@REM Licensed to the Apache Software Foundation (ASF) under one
+@REM or more contributor license agreements. See the NOTICE file
+@REM distributed with this work for additional information
+@REM regarding copyright ownership. The ASF licenses this file
+@REM to you under the Apache License, Version 2.0 (the
+@REM "License"); you may not use this file except in compliance
+@REM with the License. You may obtain a copy of the License at
+@REM
+@REM http://www.apache.org/licenses/LICENSE-2.0
+@REM
+@REM Unless required by applicable law or agreed to in writing,
+@REM software distributed under the License is distributed on an
+@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+@REM KIND, either express or implied. See the License for the
+@REM specific language governing permissions and limitations
+@REM under the License.
+@REM
+
REM @ECHO OFF
SETLOCAL ENABLEDELAYEDEXPANSION
set UIMA_HOME=c:\tools\apache-uima
Modified: incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/createGroupDocs.bat
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/createGroupDocs.bat?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/createGroupDocs.bat (original)
+++ incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/createGroupDocs.bat Thu Sep 20 16:07:04 2012
@@ -1,3 +1,22 @@
+@REM
+@REM Licensed to the Apache Software Foundation (ASF) under one
+@REM or more contributor license agreements. See the NOTICE file
+@REM distributed with this work for additional information
+@REM regarding copyright ownership. The ASF licenses this file
+@REM to you under the Apache License, Version 2.0 (the
+@REM "License"); you may not use this file except in compliance
+@REM with the License. You may obtain a copy of the License at
+@REM
+@REM http://www.apache.org/licenses/LICENSE-2.0
+@REM
+@REM Unless required by applicable law or agreed to in writing,
+@REM software distributed under the License is distributed on an
+@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+@REM KIND, either express or implied. See the License for the
+@REM specific language governing permissions and limitations
+@REM under the License.
+@REM
+
@ECHO ON
set MAT_PKG_HOME=C:\Users\m054274\Downloads\MIST_1_3_RC5_for_SHARP\MIST_1_3_RC5_for_SHARP\src\MAT
%MAT_PKG_HOME%\bin\MATEngine.cmd --task "SHARP Deidentification" --workflow Demo --steps nominate --input_dir "r:\Dept\projects\Text\temporalRelations\%3\%1" --input_file_type mat-json --output_dir "R:\Dept\projects\Text\temporalRelations\%3\%2" --output_file_type mat-json --replacer "clear -> clear" --cache_scope "pt_name,batch;org_name,batch;doc_name,batch;address,batch;other_id,batch"
Modified: incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/createGroupTransform.bat
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/createGroupTransform.bat?rev=1388092&r1=1388091&r2=1388092&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/createGroupTransform.bat (original)
+++ incubator/ctakes/trunk/ctakes-utils/scripts/knowtatorTools/createGroupTransform.bat Thu Sep 20 16:07:04 2012
@@ -1,3 +1,22 @@
+@REM
+@REM Licensed to the Apache Software Foundation (ASF) under one
+@REM or more contributor license agreements. See the NOTICE file
+@REM distributed with this work for additional information
+@REM regarding copyright ownership. The ASF licenses this file
+@REM to you under the Apache License, Version 2.0 (the
+@REM "License"); you may not use this file except in compliance
+@REM with the License. You may obtain a copy of the License at
+@REM
+@REM http://www.apache.org/licenses/LICENSE-2.0
+@REM
+@REM Unless required by applicable law or agreed to in writing,
+@REM software distributed under the License is distributed on an
+@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+@REM KIND, either express or implied. See the License for the
+@REM specific language governing permissions and limitations
+@REM under the License.
+@REM
+
@ECHO OFF
set MAT_PKG_HOME=C:\Users\m054274\Downloads\MIST_1_3_RC5_for_SHARP\MIST_1_3_RC5_for_SHARP\src\MAT