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Posted to user@uima.apache.org by Anni R Coden <an...@us.ibm.com> on 2016/04/28 21:06:14 UTC
UIMAfit - cannot find type system
Hi -
I am using UIMAfit
I created a a file: META-INF/org.apache.uima.fit/types.txt
in the file I put
classpath*:Users/anni/ ............/typesystem.xml
However I get a enrror that TypeSystemMgr requires a particular type
(specified in typesystem.xml) which was not found in the CAS
Here is the stack
Exception in thread "main"
com.ibm.langware.annotator.jFrostAEProcessException: Annotator class
com.ibm.dltj.uima_annotator.lex_analysis.TypeSystemMgr requires Type
uima.tt.ParagraphAnnotation, which was not found in the CAS.
at
com.ibm.dltj.uima_annotator.implBase.TypeSystemMgr_ImplBase.initTypeCode(
TypeSystemMgr_ImplBase.java:66)
at
com.ibm.dltj.uima_annotator.lex_analysis.TypeSystemMgr.initTypeSystem(
TypeSystemMgr.java:141)
at
com.ibm.dltj.uima_annotator.implBase.AnalyzerContext_ImplBase.setTypeSystem(
AnalyzerContext_ImplBase.java:89)
at
com.ibm.dltj.uima_annotator.implBase.jFrostAnnotator_ImplBase.typeSystemInit(
jFrostAnnotator_ImplBase.java:70)
at
org.apache.uima.analysis_component.CasAnnotator_ImplBase.checkTypeSystemChange(
CasAnnotator_ImplBase.java:100)
at
org.apache.uima.analysis_component.CasAnnotator_ImplBase.process(
CasAnnotator_ImplBase.java:55)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(
PrimitiveAnalysisEngine_impl.java:378)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(
PrimitiveAnalysisEngine_impl.java:298)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(
ASB_impl.java:568)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(
ASB_impl.java:410)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(
ASB_impl.java:343)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(
AggregateAnalysisEngine_impl.java:265)
at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(
AnalysisEngineImplBase.java:267)
at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(
AnalysisEngineImplBase.java:280)
at org.apache.uima.fit.pipeline.SimplePipeline.runPipeline(
SimplePipeline.java:285)
at com.ibm.medtas.runNegator.RunMedNeg.main(RunMedNeg.java:53)
any hints are appreciated.
Thanks, Anni
Dr. Anni R. Coden
IBM T.J. Watson Research Center
1101 Kitchawan Road, Route 134
Yorktown Heights, NY 10598
USA
Tel: (914) 945 2359 t/l 862 2359
anni@us.ibm.com
Re: UIMAfit - cannot find type system
Posted by Richard Eckart de Castilho <re...@apache.org>.
The .xml at the end is correct (this is not a UIMA import-by-name but
rather a classpath URL from the Spring Framework).
But I have some doubts that "Users/anni/....." is actually a location
within your classpath. Normally, you would have something like
classpath*:com/ibm/medtas/........./typesystem.xml
(and the files then are normally located in a JAR on your
classpasth or under src/main/resources if you use Maven).
uimaFIT uses Apache Commons logging and logs typesystem-scanning
information at the debug level. Depending on what logging you
use (e.g. log4j which is automatically detected by ACL), you
should get more detailed information about the typesystems being
found during scanning when you set the log level to "debug".
Cheers,
-- Richard
> On 04.05.2016, at 21:18, Jaroslaw Cwiklik <ui...@gmail.com> wrote:
>
> I think this is import by name so no need for .xml at the end.
>
> Try: classpath*:Users/anni/ ............/typesystem
>
> Jerry
>
> On Thu, Apr 28, 2016 at 5:06 PM, Anni R Coden <an...@us.ibm.com> wrote:
>
>> Hi -
>>
>> I am using UIMAfit
>>
>> I created a a file: META-INF/org.apache.uima.fit/types.txt
>>
>> in the file I put
>>
>> classpath*:Users/anni/ ............/typesystem.xml
>>
>>
>> However I get a enrror that TypeSystemMgr requires a particular type
>> (specified in typesystem.xml) which was not found in the CAS
>>
>> Here is the stack
>>
>> Exception in thread "main"
>> com.ibm.langware.annotator.jFrostAEProcessException: Annotator class
>> com.ibm.dltj.uima_annotator.lex_analysis.TypeSystemMgr requires Type
>> uima.tt.ParagraphAnnotation, which was not found in the CAS.
>> at
>> com.ibm.dltj.uima_annotator.implBase.TypeSystemMgr_ImplBase.initTypeCode(
>> TypeSystemMgr_ImplBase.java:66)
>> at
>> com.ibm.dltj.uima_annotator.lex_analysis.TypeSystemMgr.initTypeSystem(
>> TypeSystemMgr.java:141)
>> at
>>
>> com.ibm.dltj.uima_annotator.implBase.AnalyzerContext_ImplBase.setTypeSystem(
>> AnalyzerContext_ImplBase.java:89)
>> at
>>
>> com.ibm.dltj.uima_annotator.implBase.jFrostAnnotator_ImplBase.typeSystemInit(
>> jFrostAnnotator_ImplBase.java:70)
>> at
>>
>> org.apache.uima.analysis_component.CasAnnotator_ImplBase.checkTypeSystemChange(
>> CasAnnotator_ImplBase.java:100)
>> at
>> org.apache.uima.analysis_component.CasAnnotator_ImplBase.process(
>> CasAnnotator_ImplBase.java:55)
>> at
>>
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(
>> PrimitiveAnalysisEngine_impl.java:378)
>> at
>>
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(
>> PrimitiveAnalysisEngine_impl.java:298)
>> at
>>
>> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(
>> ASB_impl.java:568)
>> at
>>
>> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(
>> ASB_impl.java:410)
>> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(
>> ASB_impl.java:343)
>> at
>>
>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(
>> AggregateAnalysisEngine_impl.java:265)
>> at
>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(
>> AnalysisEngineImplBase.java:267)
>> at
>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(
>> AnalysisEngineImplBase.java:280)
>> at org.apache.uima.fit.pipeline.SimplePipeline.runPipeline(
>> SimplePipeline.java:285)
>> at com.ibm.medtas.runNegator.RunMedNeg.main(RunMedNeg.java:53)
>>
>> any hints are appreciated.
>>
>> Thanks, Anni
>>
>> Dr. Anni R. Coden
>> IBM T.J. Watson Research Center
>> 1101 Kitchawan Road, Route 134
>> Yorktown Heights, NY 10598
>> USA
>> Tel: (914) 945 2359 t/l 862 2359
>> anni@us.ibm.com
>>
>>
Re: UIMAfit - cannot find type system
Posted by Jaroslaw Cwiklik <ui...@gmail.com>.
I think this is import by name so no need for .xml at the end.
Try: classpath*:Users/anni/ ............/typesystem
Jerry
On Thu, Apr 28, 2016 at 5:06 PM, Anni R Coden <an...@us.ibm.com> wrote:
> Hi -
>
> I am using UIMAfit
>
> I created a a file: META-INF/org.apache.uima.fit/types.txt
>
> in the file I put
>
> classpath*:Users/anni/ ............/typesystem.xml
>
>
> However I get a enrror that TypeSystemMgr requires a particular type
> (specified in typesystem.xml) which was not found in the CAS
>
> Here is the stack
>
> Exception in thread "main"
> com.ibm.langware.annotator.jFrostAEProcessException: Annotator class
> com.ibm.dltj.uima_annotator.lex_analysis.TypeSystemMgr requires Type
> uima.tt.ParagraphAnnotation, which was not found in the CAS.
> at
> com.ibm.dltj.uima_annotator.implBase.TypeSystemMgr_ImplBase.initTypeCode(
> TypeSystemMgr_ImplBase.java:66)
> at
> com.ibm.dltj.uima_annotator.lex_analysis.TypeSystemMgr.initTypeSystem(
> TypeSystemMgr.java:141)
> at
>
> com.ibm.dltj.uima_annotator.implBase.AnalyzerContext_ImplBase.setTypeSystem(
> AnalyzerContext_ImplBase.java:89)
> at
>
> com.ibm.dltj.uima_annotator.implBase.jFrostAnnotator_ImplBase.typeSystemInit(
> jFrostAnnotator_ImplBase.java:70)
> at
>
> org.apache.uima.analysis_component.CasAnnotator_ImplBase.checkTypeSystemChange(
> CasAnnotator_ImplBase.java:100)
> at
> org.apache.uima.analysis_component.CasAnnotator_ImplBase.process(
> CasAnnotator_ImplBase.java:55)
> at
>
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(
> PrimitiveAnalysisEngine_impl.java:378)
> at
>
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(
> PrimitiveAnalysisEngine_impl.java:298)
> at
>
> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(
> ASB_impl.java:568)
> at
>
> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(
> ASB_impl.java:410)
> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(
> ASB_impl.java:343)
> at
>
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(
> AggregateAnalysisEngine_impl.java:265)
> at
> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(
> AnalysisEngineImplBase.java:267)
> at
> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(
> AnalysisEngineImplBase.java:280)
> at org.apache.uima.fit.pipeline.SimplePipeline.runPipeline(
> SimplePipeline.java:285)
> at com.ibm.medtas.runNegator.RunMedNeg.main(RunMedNeg.java:53)
>
> any hints are appreciated.
>
> Thanks, Anni
>
> Dr. Anni R. Coden
> IBM T.J. Watson Research Center
> 1101 Kitchawan Road, Route 134
> Yorktown Heights, NY 10598
> USA
> Tel: (914) 945 2359 t/l 862 2359
> anni@us.ibm.com
>
>