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Posted to commits@systemml.apache.org by du...@apache.org on 2016/01/26 02:13:05 UTC
[41/55] [partial] incubator-systemml git commit: [SYSTEMML-482]
[SYSTEMML-480] Adding a Git attributes file to enfore Unix-styled line
endings, and normalizing all of the line endings.
http://git-wip-us.apache.org/repos/asf/incubator-systemml/blob/816e2db8/scripts/algorithms/random-forest.dml
----------------------------------------------------------------------
diff --git a/scripts/algorithms/random-forest.dml b/scripts/algorithms/random-forest.dml
index 7bdc1fb..b68d711 100644
--- a/scripts/algorithms/random-forest.dml
+++ b/scripts/algorithms/random-forest.dml
@@ -1,1375 +1,1375 @@
-#-------------------------------------------------------------
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-#-------------------------------------------------------------
-
-#
-# THIS SCRIPT IMPLEMENTS CLASSIFICATION RANDOM FOREST WITH BOTH SCALE AND CATEGORICAL FEATURES
-#
-# INPUT PARAMETERS:
-# ---------------------------------------------------------------------------------------------
-# NAME TYPE DEFAULT MEANING
-# ---------------------------------------------------------------------------------------------
-# X String --- Location to read feature matrix X; note that X needs to be both recoded and dummy coded
-# Y String --- Location to read label matrix Y; note that Y needs to be both recoded and dummy coded
-# R String " " Location to read the matrix R which for each feature in X contains the following information
-# - R[,1]: column ids
-# - R[,2]: start indices
-# - R[,3]: end indices
-# If R is not provided by default all variables are assumed to be scale
-# bins Int 20 Number of equiheight bins per scale feature to choose thresholds
-# depth Int 25 Maximum depth of the learned tree
-# num_leaf Int 10 Number of samples when splitting stops and a leaf node is added
-# num_samples Int 3000 Number of samples at which point we switch to in-memory subtree building
-# num_trees Int 10 Number of trees to be learned in the random forest model
-# subsamp_rate Double 1.0 Parameter controlling the size of each tree in the forest; samples are selected from a
-# Poisson distribution with parameter subsamp_rate (the default value is 1.0)
-# feature_subset Double 0.5 Parameter that controls the number of feature used as candidates for splitting at each tree node
-# as a power of number of features in the dataset;
-# by default square root of features (i.e., feature_subset = 0.5) are used at each tree node
-# impurity String "Gini" Impurity measure: entropy or Gini (the default)
-# M String --- Location to write matrix M containing the learned tree
-# C String " " Location to write matrix C containing the number of times samples are chosen in each tree of the random forest
-# S_map String " " Location to write the mappings from scale feature ids to global feature ids
-# C_map String " " Location to write the mappings from categorical feature ids to global feature ids
-# fmt String "text" The output format of the model (matrix M), such as "text" or "csv"
-# ---------------------------------------------------------------------------------------------
-# OUTPUT:
-# Matrix M where each column corresponds to a node in the learned tree and each row contains the following information:
-# M[1,j]: id of node j (in a complete binary tree)
-# M[2,j]: tree id to which node j belongs
-# M[3,j]: Offset (no. of columns) to left child of j
-# M[4,j]: Feature index of the feature that node j looks at if j is an internal node, otherwise 0
-# M[5,j]: Type of the feature that node j looks at if j is an internal node: 1 for scale and 2 for categorical features,
-# otherwise the label that leaf node j is supposed to predict
-# M[6,j]: 1 if j is an internal node and the feature chosen for j is scale, otherwise the size of the subset of values
-# stored in rows 7,8,... if j is categorical
-# M[7:,j]: Only applicable for internal nodes. Threshold the example's feature value is compared to is stored at M[7,j] if the feature chosen for j is scale;
-# If the feature chosen for j is categorical rows 7,8,... depict the value subset chosen for j
-# -------------------------------------------------------------------------------------------
-# HOW TO INVOKE THIS SCRIPT - EXAMPLE:
-# hadoop jar SystemML.jar -f random-forest.dml -nvargs X=INPUT_DIR/X Y=INPUT_DIR/Y R=INPUT_DIR/R M=OUTPUT_DIR/model
-# bins=20 depth=25 num_leaf=10 num_samples=3000 num_trees=10 impurity=Gini fmt=csv
-
-
-# External function for binning
-binning = externalFunction(Matrix[Double] A, Integer binsize, Integer numbins) return (Matrix[Double] B, Integer numbinsdef)
- implemented in (classname="org.apache.sysml.udf.lib.BinningWrapper",exectype="mem")
-
-
-# Default values of some parameters
-fileR = ifdef ($R, " ");
-fileC = ifdef ($C, " ");
-fileS_map = ifdef ($S_map, " ");
-fileC_map = ifdef ($C_map, " ");
-fileM = $M;
-num_bins = ifdef($bins, 20);
-depth = ifdef($depth, 25);
-num_leaf = ifdef($num_leaf, 10);
-num_trees = ifdef($num_trees, 1);
-threshold = ifdef ($num_samples, 3000);
-imp = ifdef($impurity, "Gini");
-rate = ifdef ($subsamp_rate, 1);
-fpow = ifdef ($feature_subset, 0.5);
-fmtO = ifdef($fmt, "text");
-
-X = read($X);
-Y_bin = read($Y);
-num_records = nrow (X);
-num_classes = ncol (Y_bin);
-
-# check if there is only one class label
-Y_bin_sum = sum (ppred (colSums (Y_bin), num_records, "=="));
-if (Y_bin_sum == 1) {
- stop ("Y contains only one class label. No model will be learned!");
-} else if (Y_bin_sum > 1) {
- stop ("Y is not properly dummy coded. Multiple columns of Y contain only ones!")
-}
-
-# split data into X_scale and X_cat
-if (fileR != " ") {
- R = read (fileR);
- R = order (target = R, by = 2); # sort by start indices
- dummy_coded = ppred (R[,2], R[,3], "!=");
- R_scale = removeEmpty (target = R[,2:3] * (1 - dummy_coded), margin = "rows");
- R_cat = removeEmpty (target = R[,2:3] * dummy_coded, margin = "rows");
- if (fileS_map != " ") {
- scale_feature_mapping = removeEmpty (target = (1 - dummy_coded) * seq (1, nrow (R)), margin = "rows");
- write (scale_feature_mapping, fileS_map, format = fmtO);
- }
- if (fileC_map != " ") {
- cat_feature_mapping = removeEmpty (target = dummy_coded * seq (1, nrow (R)), margin = "rows");
- write (cat_feature_mapping, fileC_map, format = fmtO);
- }
- sum_dummy = sum (dummy_coded);
- if (sum_dummy == nrow (R)) { # all features categorical
- print ("All features categorical");
- num_cat_features = nrow (R_cat);
- num_scale_features = 0;
- X_cat = X;
- distinct_values = t (R_cat[,2] - R_cat[,1] + 1);
- distinct_values_max = max (distinct_values);
- distinct_values_offset = cumsum (t (distinct_values));
- distinct_values_overall = sum (distinct_values);
- } else if (sum_dummy == 0) { # all features scale
- print ("All features scale");
- num_scale_features = ncol (X);
- num_cat_features = 0;
- X_scale = X;
- distinct_values_max = 1;
- } else { # some features scale some features categorical
- num_cat_features = nrow (R_cat);
- num_scale_features = nrow (R_scale);
- distinct_values = t (R_cat[,2] - R_cat[,1] + 1);
- distinct_values_max = max (distinct_values);
- distinct_values_offset = cumsum (t (distinct_values));
- distinct_values_overall = sum (distinct_values);
-
- W = matrix (1, rows = num_cat_features, cols = 1) %*% matrix ("1 -1", rows = 1, cols = 2);
- W = matrix (W, rows = 2 * num_cat_features, cols = 1);
- if (as.scalar (R_cat[num_cat_features, 2]) == ncol (X)) {
- W[2 * num_cat_features,] = 0;
- }
-
- last = ppred (R_cat[,2], ncol (X), "!=");
- R_cat1 = (R_cat[,2] + 1) * last;
- R_cat[,2] = (R_cat[,2] * (1 - last)) + R_cat1;
- R_cat_vec = matrix (R_cat, rows = 2 * num_cat_features, cols = 1);
-
- col_tab = table (R_cat_vec, 1, W, ncol (X), 1);
- col_ind = cumsum (col_tab);
-
- col_ind_cat = removeEmpty (target = col_ind * seq (1, ncol (X)), margin = "rows");
- col_ind_scale = removeEmpty (target = (1 - col_ind) * seq (1, ncol (X)), margin = "rows");
- X_cat = X %*% table (col_ind_cat, seq (1, nrow (col_ind_cat)), ncol (X), nrow (col_ind_cat));
- X_scale = X %*% table (col_ind_scale, seq (1, nrow (col_ind_scale)), ncol (X), nrow (col_ind_scale));
- }
-} else { # only scale features exist
- print ("All features scale");
- num_scale_features = ncol (X);
- num_cat_features = 0;
- X_scale = X;
- distinct_values_max = 1;
-}
-
-if (num_scale_features > 0) {
-
- print ("COMPUTING BINNING...");
- bin_size = max (as.integer (num_records / num_bins), 1);
- count_thresholds = matrix (0, rows = 1, cols = num_scale_features)
- thresholds = matrix (0, rows = num_bins + 1, cols = num_scale_features)
- parfor(i1 in 1:num_scale_features) {
- col = order (target = X_scale[,i1], by = 1, decreasing = FALSE);
- [col_bins, num_bins_defined] = binning (col, bin_size, num_bins);
- count_thresholds[,i1] = num_bins_defined;
- thresholds[,i1] = col_bins;
- }
-
- print ("PREPROCESSING SCALE FEATURE MATRIX...");
- min_num_bins = min (count_thresholds);
- max_num_bins = max (count_thresholds);
- total_num_bins = sum (count_thresholds);
- cum_count_thresholds = t (cumsum (t (count_thresholds)));
- X_scale_ext = matrix (0, rows = num_records, cols = total_num_bins);
- parfor (i2 in 1:num_scale_features, check = 0) {
- Xi2 = X_scale[,i2];
- count_threshold = as.scalar (count_thresholds[,i2]);
- offset_feature = 1;
- if (i2 > 1) {
- offset_feature = offset_feature + as.integer (as.scalar (cum_count_thresholds[, (i2 - 1)]));
- }
-
- ti2 = t(thresholds[1:count_threshold, i2]);
- X_scale_ext[,offset_feature:(offset_feature + count_threshold - 1)] = outer (Xi2, ti2, "<");
- }
-}
-
-num_features_total = num_scale_features + num_cat_features;
-num_feature_samples = as.integer (floor (num_features_total ^ fpow));
-
-##### INITIALIZATION
-L = matrix (1, rows = num_records, cols = num_trees); # last visited node id for each training sample
-
-# create matrix of counts (generated by Poisson distribution) storing how many times each sample appears in each tree
-print ("CONPUTING COUNTS...");
-C = rand (rows = num_records, cols = num_trees, pdf = "poisson", lambda = rate);
-Ix_nonzero = ppred (C, 0, "!=");
-L = L * Ix_nonzero;
-total_counts = sum (C);
-
-
-# model
-# LARGE leaf nodes
-# NC_large[,1]: node id
-# NC_large[,2]: tree id
-# NC_large[,3]: class label
-# NC_large[,4]: no. of misclassified samples
-# NC_large[,5]: 1 if special leaf (impure and 3 samples at that leaf > threshold) or 0 otherwise
-NC_large = matrix (0, rows = 5, cols = 1);
-
-# SMALL leaf nodes
-# same schema as for LARGE leaf nodes (to be initialized)
-NC_small = matrix (0, rows = 5, cols = 1);
-
-# LARGE internal nodes
-# Q_large[,1]: node id
-# Q_large[,2]: tree id
-Q_large = matrix (0, rows = 2, cols = num_trees);
-Q_large[1,] = matrix (1, rows = 1, cols = num_trees);
-Q_large[2,] = t (seq (1, num_trees));
-
-# SMALL internal nodes
-# same schema as for LARGE internal nodes (to be initialized)
-Q_small = matrix (0, rows = 2, cols = 1);
-
-# F_large[,1]: feature
-# F_large[,2]: type
-# F_large[,3]: offset
-F_large = matrix (0, rows = 3, cols = 1);
-
-# same schema as for LARGE nodes
-F_small = matrix (0, rows = 3, cols = 1);
-
-# split points for LARGE internal nodes
-S_large = matrix (0, rows = 1, cols = 1);
-
-# split points for SMALL internal nodes
-S_small = matrix (0, rows = 1, cols = 1);
-
-# initialize queue
-cur_nodes_large = matrix (1, rows = 2, cols = num_trees);
-cur_nodes_large[2,] = t (seq (1, num_trees));
-
-num_cur_nodes_large = num_trees;
-num_cur_nodes_small = 0;
-level = 0;
-
-while ((num_cur_nodes_large + num_cur_nodes_small) > 0 & level < depth) {
-
- level = level + 1;
- print (" --- start level " + level + " --- ");
-
- ##### PREPARE MODEL
- if (num_cur_nodes_large > 0) { # LARGE nodes to process
- cur_Q_large = matrix (0, rows = 2, cols = 2 * num_cur_nodes_large);
- cur_NC_large = matrix (0, rows = 5, cols = 2 * num_cur_nodes_large);
- cur_F_large = matrix (0, rows = 3, cols = num_cur_nodes_large);
- cur_S_large = matrix (0, rows = 1, cols = num_cur_nodes_large * distinct_values_max);
- cur_nodes_small = matrix (0, rows = 3, cols = 2 * num_cur_nodes_large);
- }
-
- ##### LOOP OVER LARGE NODES...
- parfor (i6 in 1:num_cur_nodes_large, check = 0) {
-
- cur_node = as.scalar (cur_nodes_large[1,i6]);
- cur_tree = as.scalar (cur_nodes_large[2,i6]);
-
- # select sample features WOR
- feature_samples = sample (num_features_total, num_feature_samples);
- feature_samples = order (target = feature_samples, by = 1);
- num_scale_feature_samples = sum (ppred (feature_samples, num_scale_features, "<="));
- num_cat_feature_samples = num_feature_samples - num_scale_feature_samples;
-
- # --- find best split ---
- # samples that reach cur_node
- Ix = ppred (L[,cur_tree], cur_node, "==");
-
- cur_Y_bin = Y_bin * (Ix * C[,cur_tree]);
- label_counts_overall = colSums (cur_Y_bin);
- label_sum_overall = sum (label_counts_overall);
- label_dist_overall = label_counts_overall / label_sum_overall;
-
- if (imp == "entropy") {
- label_dist_zero = ppred (label_dist_overall, 0, "==");
- cur_impurity = - sum (label_dist_overall * log (label_dist_overall + label_dist_zero)); # / log (2); # impurity before
- } else { # imp == "Gini"
- cur_impurity = sum (label_dist_overall * (1 - label_dist_overall)); # impurity before
- }
- best_scale_gain = 0;
- best_cat_gain = 0;
- if (num_scale_features > 0 & num_scale_feature_samples > 0) {
-
- scale_feature_samples = feature_samples[1:num_scale_feature_samples,];
-
- # main operation
- label_counts_left_scale = t (t (cur_Y_bin) %*% X_scale_ext);
-
- # compute left and right label distribution
- label_sum_left = rowSums (label_counts_left_scale);
- label_dist_left = label_counts_left_scale / label_sum_left;
- if (imp == "entropy") {
- label_dist_left = replace (target = label_dist_left, pattern = 0, replacement = 1);
- log_label_dist_left = log (label_dist_left); # / log (2)
- impurity_left_scale = - rowSums (label_dist_left * log_label_dist_left);
- } else { # imp == "Gini"
- impurity_left_scale = rowSums (label_dist_left * (1 - label_dist_left));
- }
- #
- label_counts_right_scale = - label_counts_left_scale + label_counts_overall;
- label_sum_right = rowSums (label_counts_right_scale);
- label_dist_right = label_counts_right_scale / label_sum_right;
- if (imp == "entropy") {
- label_dist_right = replace (target = label_dist_right, pattern = 0, replacement = 1);
- log_label_dist_right = log (label_dist_right); # / log (2)
- impurity_right_scale = - rowSums (label_dist_right * log_label_dist_right);
- } else { # imp == "Gini"
- impurity_right_scale = rowSums (label_dist_right * (1 - label_dist_right));
- }
-
- I_gain_scale = cur_impurity - ( ( label_sum_left / label_sum_overall ) * impurity_left_scale + ( label_sum_right / label_sum_overall ) * impurity_right_scale);
-
- I_gain_scale = replace (target = I_gain_scale, pattern = "NaN", replacement = 0);
-
- # determine best feature to split on and the split value
- feature_start_ind = matrix (0, rows = 1, cols = num_scale_features);
- feature_start_ind[1,1] = 1;
- if (num_scale_features > 1) {
- feature_start_ind[1,2:num_scale_features] = cum_count_thresholds[1,1:(num_scale_features - 1)] + 1;
- }
- max_I_gain_found = 0;
- max_I_gain_found_ind = 0;
- best_i = 0;
-
- for (i in 1:num_scale_feature_samples) { # assuming feature_samples is 5x1
- cur_feature_samples_bin = as.scalar (scale_feature_samples[i,]);
- cur_start_ind = as.scalar (feature_start_ind[,cur_feature_samples_bin]);
- cur_end_ind = as.scalar (cum_count_thresholds[,cur_feature_samples_bin]);
- I_gain_portion = I_gain_scale[cur_start_ind:cur_end_ind,];
- cur_max_I_gain = max (I_gain_portion);
- cur_max_I_gain_ind = as.scalar (rowIndexMax (t (I_gain_portion)));
- if (cur_max_I_gain > max_I_gain_found) {
- max_I_gain_found = cur_max_I_gain;
- max_I_gain_found_ind = cur_max_I_gain_ind;
- best_i = i;
- }
- }
-
- best_scale_gain = max_I_gain_found;
- max_I_gain_ind_scale = max_I_gain_found_ind;
- best_scale_feature = 0;
- if (best_i > 0) {
- best_scale_feature = as.scalar (scale_feature_samples[best_i,]);
- }
- best_scale_split = max_I_gain_ind_scale;
- if (best_scale_feature > 1) {
- best_scale_split = best_scale_split + as.scalar(cum_count_thresholds[,(best_scale_feature - 1)]);
- }
- }
-
- if (num_cat_features > 0 & num_cat_feature_samples > 0){
-
- cat_feature_samples = feature_samples[(num_scale_feature_samples + 1):(num_scale_feature_samples + num_cat_feature_samples),] - num_scale_features;
-
- # initialization
- split_values_bin = matrix (0, rows = 1, cols = distinct_values_overall);
- split_values = split_values_bin;
- split_values_offset = matrix (0, rows = 1, cols = num_cat_features);
- I_gains = split_values_offset;
- impurities_left = split_values_offset;
- impurities_right = split_values_offset;
- best_label_counts_left = matrix (0, rows = num_cat_features, cols = num_classes);
- best_label_counts_right = matrix (0, rows = num_cat_features, cols = num_classes);
-
- # main operation
- label_counts = t (t (cur_Y_bin) %*% X_cat);
-
- parfor (i9 in 1:num_cat_feature_samples, check = 0){
-
- cur_cat_feature = as.scalar (cat_feature_samples[i9,1]);
- start_ind = 1;
- if (cur_cat_feature > 1) {
- start_ind = start_ind + as.scalar (distinct_values_offset[(cur_cat_feature - 1),]);
- }
- offset = as.scalar (distinct_values[1,cur_cat_feature]);
-
- cur_label_counts = label_counts[start_ind:(start_ind + offset - 1),];
-
- label_sum = rowSums (cur_label_counts);
- label_dist = cur_label_counts / label_sum;
- if (imp == "entropy") {
- label_dist = replace (target = label_dist, pattern = 0, replacement = 1);
- log_label_dist = log (label_dist); # / log(2)
- impurity = - rowSums (label_dist * log_label_dist);
- impurity = replace (target = impurity, pattern = "NaN", replacement = 1/0);
- } else { # imp == "Gini"
- impurity = rowSums (label_dist * (1 - label_dist));
- }
-
- # sort cur feature by impurity
- cur_distinct_values = seq (1, nrow (cur_label_counts));
- cur_distinct_values_impurity = append (cur_distinct_values, impurity);
- cur_feature_sorted = order (target = cur_distinct_values_impurity, by = 2, decreasing = FALSE);
- P = table (cur_distinct_values, cur_feature_sorted); # permutation matrix
- label_counts_sorted = P %*% cur_label_counts;
-
- # compute left and right label distribution
- label_counts_left = cumsum (label_counts_sorted);
-
- label_sum_left = rowSums (label_counts_left);
- label_dist_left = label_counts_left / label_sum_left;
- label_dist_left = replace (target = label_dist_left, pattern = "NaN", replacement = 1);
- if (imp == "entropy") {
- label_dist_left = replace (target = label_dist_left, pattern = 0, replacement = 1);
- log_label_dist_left = log (label_dist_left); # / log(2)
- impurity_left = - rowSums (label_dist_left * log_label_dist_left);
- } else { # imp == "Gini"
- impurity_left = rowSums (label_dist_left * (1 - label_dist_left));
- }
- #
- label_counts_right = - label_counts_left + label_counts_overall;
- label_sum_right = rowSums (label_counts_right);
- label_dist_right = label_counts_right / label_sum_right;
- label_dist_right = replace (target = label_dist_right, pattern = "NaN", replacement = 1);
- if (imp == "entropy") {
- label_dist_right = replace (target = label_dist_right, pattern = 0, replacement = 1);
- log_label_dist_right = log (label_dist_right); # / log (2)
- impurity_right = - rowSums (label_dist_right * log_label_dist_right);
- } else { # imp == "Gini"
- impurity_right = rowSums (label_dist_right * (1 - label_dist_right));
- }
- I_gain = cur_impurity - ( ( label_sum_left / label_sum_overall ) * impurity_left + ( label_sum_right / label_sum_overall ) * impurity_right);
-
- Ix_label_sum_left_zero = ppred (label_sum_left, 0, "==");
- Ix_label_sum_right_zero = ppred (label_sum_right, 0, "==");
- Ix_label_sum_zero = Ix_label_sum_left_zero * Ix_label_sum_right_zero;
- I_gain = I_gain * (1 - Ix_label_sum_zero);
-
- I_gain[nrow (I_gain),] = 0; # last entry invalid
-
- max_I_gain_ind = as.scalar (rowIndexMax (t (I_gain)));
-
- split_values[1, start_ind:(start_ind + max_I_gain_ind - 1)] = t (cur_feature_sorted[1:max_I_gain_ind,1]);
- for (i10 in 1:max_I_gain_ind) {
- ind = as.scalar (cur_feature_sorted[i10,1]);
- if (ind == 1) {
- split_values_bin[1,start_ind] = 1.0;
- } else {
- split_values_bin[1,(start_ind + ind - 1)] = 1.0;
- }
- }
- split_values_offset[1,cur_cat_feature] = max_I_gain_ind;
-
- I_gains[1,cur_cat_feature] = max (I_gain);
-
- impurities_left[1,cur_cat_feature] = as.scalar (impurity_left[max_I_gain_ind,]);
- impurities_right[1,cur_cat_feature] = as.scalar (impurity_right[max_I_gain_ind,]);
- best_label_counts_left[cur_cat_feature,] = label_counts_left[max_I_gain_ind,];
- best_label_counts_right[cur_cat_feature,] = label_counts_right[max_I_gain_ind,];
- }
-
- # determine best feature to split on and the split values
- best_cat_feature = as.scalar (rowIndexMax (I_gains));
- best_cat_gain = max (I_gains);
- start_ind = 1;
- if (best_cat_feature > 1) {
- start_ind = start_ind + as.scalar (distinct_values_offset[(best_cat_feature - 1),]);
- }
- offset = as.scalar (distinct_values[1,best_cat_feature]);
- best_split_values_bin = split_values_bin[1, start_ind:(start_ind + offset - 1)];
- }
-
- # compare best scale feature to best cat. feature and pick the best one
- if (num_scale_features > 0 & num_scale_feature_samples > 0 & best_scale_gain >= best_cat_gain & best_scale_gain > 0) {
-
- # --- update model ---
- cur_F_large[1,i6] = best_scale_feature;
- cur_F_large[2,i6] = 1;
- cur_F_large[3,i6] = 1;
- cur_S_large[1,(i6 - 1) * distinct_values_max + 1] = thresholds[max_I_gain_ind_scale, best_scale_feature];
-
- left_child = 2 * (cur_node - 1) + 1 + 1;
- right_child = 2 * (cur_node - 1) + 2 + 1;
-
- # samples going to the left subtree
- Ix_left = X_scale_ext[,best_scale_split];
-
- Ix_left = Ix * Ix_left;
- Ix_right = Ix * (1 - Ix_left);
-
- L[,cur_tree] = L[,cur_tree] * (1 - Ix_left) + (Ix_left * left_child);
- L[,cur_tree] = L[,cur_tree] * (1 - Ix_right) + (Ix_right * right_child);
-
- left_child_size = sum (Ix_left * C[,cur_tree]);
- right_child_size = sum (Ix_right * C[,cur_tree]);
-
- # check if left or right child is a leaf
- left_pure = FALSE;
- right_pure = FALSE;
- cur_impurity_left = as.scalar(impurity_left_scale[best_scale_split,]); # max_I_gain_ind_scale
- cur_impurity_right = as.scalar(impurity_right_scale[best_scale_split,]); # max_I_gain_ind_scale
- if ( (left_child_size <= num_leaf | cur_impurity_left == 0 | (level == depth)) &
- (right_child_size <= num_leaf | cur_impurity_right == 0 | (level == depth)) |
- (left_child_size <= threshold & right_child_size <= threshold & (level == depth)) ) { # both left and right nodes are leaf
-
- cur_label_counts_left = label_counts_left_scale[best_scale_split,]; # max_I_gain_ind_scale
- cur_NC_large[1,(2 * (i6 - 1) + 1)] = left_child;
- cur_NC_large[2,(2 * (i6 - 1) + 1)] = cur_tree;
- cur_NC_large[3,(2 * (i6 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
- left_pure = TRUE;
- # compute number of misclassified points
- cur_NC_large[4,(2 * (i6 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
-
- cur_label_counts_right = label_counts_overall - cur_label_counts_left;
- cur_NC_large[1,(2 * i6)] = right_child;
- cur_NC_large[2,(2 * i6)] = cur_tree;
- cur_NC_large[3,(2 * i6)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
- right_pure = TRUE;
- # compute number of misclassified pints
- cur_NC_large[4,(2 * i6)] = right_child_size - max (cur_label_counts_right);
-
- } else if (left_child_size <= num_leaf | cur_impurity_left == 0 | (level == depth) |
- (left_child_size <= threshold & (level == depth))) {
-
- cur_label_counts_left = label_counts_left_scale[best_scale_split,]; # max_I_gain_ind_scale
- cur_NC_large[1,(2 * (i6 - 1) + 1)] = left_child;
- cur_NC_large[2,(2 * (i6 - 1) + 1)] = cur_tree;
- cur_NC_large[3,(2 * (i6 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
- left_pure = TRUE;
- # compute number of misclassified points
- cur_NC_large[4,(2 * (i6 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
-
- } else if (right_child_size <= num_leaf | cur_impurity_right == 0 | (level == depth) |
- (right_child_size <= threshold & (level == depth))) {
-
- cur_label_counts_right = label_counts_right_scale[best_scale_split,]; # max_I_gain_ind_scale
- cur_NC_large[1,(2 * i6)] = right_child;
- cur_NC_large[2,(2 * i6)] = cur_tree;
- cur_NC_large[3,(2 * i6)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
- right_pure = TRUE;
- # compute number of misclassified pints
- cur_NC_large[4,(2 * i6)] = right_child_size - max (cur_label_counts_right);
-
- }
-
- } else if (num_cat_features > 0 & num_cat_feature_samples > 0 & best_cat_gain > 0) {
-
- # --- update model ---
- cur_F_large[1,i6] = best_cat_feature;
- cur_F_large[2,i6] = 2;
- offset_nonzero = as.scalar (split_values_offset[1,best_cat_feature]);
- S_start_ind = (i6 - 1) * distinct_values_max + 1;
- cur_F_large[3,i6] = offset_nonzero;
- cur_S_large[1,S_start_ind:(S_start_ind + offset_nonzero - 1)] = split_values[1,start_ind:(start_ind + offset_nonzero - 1)];
-
- left_child = 2 * (cur_node - 1) + 1 + 1;
- right_child = 2 * (cur_node - 1) + 2 + 1;
-
- # samples going to the left subtree
- Ix_left = rowSums (X_cat[,start_ind:(start_ind + offset - 1)] * best_split_values_bin);
- Ix_left = ppred (Ix_left, 1, ">=");
-
- Ix_left = Ix * Ix_left;
- Ix_right = Ix * (1 - Ix_left);
-
- L[,cur_tree] = L[,cur_tree] * (1 - Ix_left) + (Ix_left * left_child);
- L[,cur_tree] = L[,cur_tree] * (1 - Ix_right) + (Ix_right * right_child);
-
- left_child_size = sum (Ix_left * C[,cur_tree]);
- right_child_size = sum (Ix_right * C[,cur_tree]);
-
- # check if left or right child is a leaf
- left_pure = FALSE;
- right_pure = FALSE;
- cur_impurity_left = as.scalar(impurities_left[,best_cat_feature]);
- cur_impurity_right = as.scalar(impurities_right[,best_cat_feature]);
- if ( (left_child_size <= num_leaf | cur_impurity_left == 0 | (level == depth)) &
- (right_child_size <= num_leaf | cur_impurity_right == 0 | (level == depth)) |
- (left_child_size <= threshold & right_child_size <= threshold & (level == depth)) ) { # both left and right nodes are leaf
-
- cur_label_counts_left = best_label_counts_left[best_cat_feature,];
- cur_NC_large[1,(2 * (i6 - 1) + 1)] = left_child;
- cur_NC_large[2,(2 * (i6 - 1) + 1)] = cur_tree;
- cur_NC_large[3,(2 * (i6 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
- left_pure = TRUE;
- # compute number of misclassified points
- cur_NC_large[4,(2 * (i6 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
-
- cur_label_counts_right = label_counts_overall - cur_label_counts_left;
- cur_NC_large[1,(2 * i6)] = right_child;
- cur_NC_large[2,(2 * i6)] = cur_tree;
- cur_NC_large[3,(2 * i6)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
- right_pure = TRUE;
- # compute number of misclassified pints
- cur_NC_large[4,(2 * i6)] = right_child_size - max (cur_label_counts_right);
-
- } else if (left_child_size <= num_leaf | cur_impurity_left == 0 | (level == depth) |
- (left_child_size <= threshold & (level == depth))) {
-
- cur_label_counts_left = best_label_counts_left[best_cat_feature,];
- cur_NC_large[1,(2 * (i6 - 1) + 1)] = left_child;
- cur_NC_large[2,(2 * (i6 - 1) + 1)] = cur_tree;
- cur_NC_large[3,(2 * (i6 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
- left_pure = TRUE;
- # compute number of misclassified points
- cur_NC_large[4,(2 * (i6 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
-
- } else if (right_child_size <= num_leaf | cur_impurity_right == 0 | (level == depth) |
- (right_child_size <= threshold & (level == depth))) {
-
- cur_label_counts_right = best_label_counts_right[best_cat_feature,];
- cur_NC_large[1,(2 * i6)] = right_child;
- cur_NC_large[2,(2 * i6)] = cur_tree;
- cur_NC_large[3,(2 * i6)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
- right_pure = TRUE;
- # compute number of misclassified pints
- cur_NC_large[4,(2 * i6)] = right_child_size - max (cur_label_counts_right);
-
- }
- } else {
-
- print ("NUMBER OF SAMPLES AT NODE " + cur_node + " in tree " + cur_tree + " CANNOT BE REDUCED TO MATCH " + num_leaf + ". THIS NODE IS DECLARED AS LEAF!");
- right_pure = TRUE;
- left_pure = TRUE;
- cur_NC_large[1,(2 * (i6 - 1) + 1)] = cur_node;
- cur_NC_large[2,(2 * (i6 - 1) + 1)] = cur_tree;
- class_label = as.scalar (rowIndexMax (label_counts_overall));
- cur_NC_large[3,(2 * (i6 - 1) + 1)] = class_label;
- cur_NC_large[4,(2 * (i6 - 1) + 1)] = label_sum_overall - max (label_counts_overall);
- cur_NC_large[5,(2 * (i6 - 1) + 1)] = 1; # special leaf
-
- }
-
- # add nodes to Q
- if (!left_pure) {
- if (left_child_size > threshold) {
- cur_Q_large[1,(2 * (i6 - 1)+ 1)] = left_child;
- cur_Q_large[2,(2 * (i6 - 1)+ 1)] = cur_tree;
- } else {
- cur_nodes_small[1,(2 * (i6 - 1)+ 1)] = left_child;
- cur_nodes_small[2,(2 * (i6 - 1)+ 1)] = left_child_size;
- cur_nodes_small[3,(2 * (i6 - 1)+ 1)] = cur_tree;
- }
- }
- if (!right_pure) {
- if (right_child_size > threshold) {
- cur_Q_large[1,(2 * i6)] = right_child;
- cur_Q_large[2,(2 * i6)] = cur_tree;
- } else{
- cur_nodes_small[1,(2 * i6)] = right_child;
- cur_nodes_small[2,(2 * i6)] = right_child_size;
- cur_nodes_small[3,(2 * i6)] = cur_tree;
- }
- }
- }
-
- ##### PREPARE MODEL FOR LARGE NODES
- if (num_cur_nodes_large > 0) {
- cur_Q_large = removeEmpty (target = cur_Q_large, margin = "cols");
- if (as.scalar (cur_Q_large[1,1]) != 0) Q_large = append (Q_large, cur_Q_large);
- cur_NC_large = removeEmpty (target = cur_NC_large, margin = "cols");
- if (as.scalar (cur_NC_large[1,1]) != 0) NC_large = append (NC_large, cur_NC_large);
-
- cur_F_large = removeEmpty (target = cur_F_large, margin = "cols");
- if (as.scalar (cur_F_large[1,1]) != 0) F_large = append (F_large, cur_F_large);
- cur_S_large = removeEmpty (target = cur_S_large, margin = "cols");
- if (as.scalar (cur_S_large[1,1]) != 0) S_large = append (S_large, cur_S_large);
-
- num_cur_nodes_large_pre = 2 * num_cur_nodes_large;
- if (as.scalar (cur_Q_large[1,1]) == 0) {
- num_cur_nodes_large = 0;
- } else {
- cur_nodes_large = cur_Q_large;
- num_cur_nodes_large = ncol (cur_Q_large);
- }
- }
-
- ##### PREPARE MODEL FOR SMALL NODES
- cur_nodes_small_nonzero = removeEmpty (target = cur_nodes_small, margin = "cols");
- if (as.scalar (cur_nodes_small_nonzero[1,1]) != 0) { # if SMALL nodes exist
- num_cur_nodes_small = ncol (cur_nodes_small_nonzero);
- }
-
- if (num_cur_nodes_small > 0) { # SMALL nodes to process
- reserve_len = sum (2 ^ (ceil (log (cur_nodes_small_nonzero[2,]) / log (2)))) + num_cur_nodes_small;
- cur_Q_small = matrix (0, rows = 2, cols = reserve_len);
- cur_F_small = matrix (0, rows = 3, cols = reserve_len);
- cur_NC_small = matrix (0, rows = 5, cols = reserve_len);
- cur_S_small = matrix (0, rows = 1, cols = reserve_len * distinct_values_max); # split values of the best feature
- }
-
- ##### LOOP OVER SMALL NODES...
- parfor (i7 in 1:num_cur_nodes_small, check = 0) {
-
- cur_node_small = as.scalar (cur_nodes_small_nonzero[1,i7]);
- cur_tree_small = as.scalar (cur_nodes_small_nonzero[3,i7]);
-
- # build dataset for SMALL node
- Ix = ppred (L[,cur_tree_small], cur_node_small, "==");
- if (num_scale_features > 0) {
- X_scale_ext_small = removeEmpty (target = X_scale_ext, margin = "rows", select = Ix);
- }
- if (num_cat_features > 0) {
- X_cat_small = removeEmpty (target = X_cat, margin = "rows", select = Ix);
- }
-
- L_small = removeEmpty (target = L * Ix, margin = "rows");
- C_small = removeEmpty (target = C * Ix, margin = "rows");
- Y_bin_small = removeEmpty (target = Y_bin * Ix, margin = "rows");
-
- # compute offset
- offsets = cumsum (t (2 ^ ceil (log (cur_nodes_small_nonzero[2,]) / log (2))));
- start_ind_global = 1;
- if (i7 > 1) {
- start_ind_global = start_ind_global + as.scalar (offsets[(i7 - 1),]);
- }
- start_ind_S_global = 1;
- if (i7 > 1) {
- start_ind_S_global = start_ind_S_global + (as.scalar (offsets[(i7 - 1),]) * distinct_values_max);
- }
-
- Q = matrix (0, rows = 2, cols = 1);
- Q[1,1] = cur_node_small;
- Q[2,1] = cur_tree_small;
- F = matrix (0, rows = 3, cols = 1);
- NC = matrix (0, rows = 5, cols = 1);
- S = matrix (0, rows = 1, cols = 1);
-
- cur_nodes_ = matrix (cur_node_small, rows = 2, cols = 1);
- cur_nodes_[1,1] = cur_node_small;
- cur_nodes_[2,1] = cur_tree_small;
-
- num_cur_nodes = 1;
- level_ = level;
- while (num_cur_nodes > 0 & level_ < depth) {
-
- level_ = level_ + 1;
-
- cur_Q = matrix (0, rows = 2, cols = 2 * num_cur_nodes);
- cur_F = matrix (0, rows = 3, cols = num_cur_nodes);
- cur_NC = matrix (0, rows = 5, cols = 2 * num_cur_nodes);
- cur_S = matrix (0, rows = 1, cols = num_cur_nodes * distinct_values_max);
-
- parfor (i8 in 1:num_cur_nodes, check = 0) {
-
- cur_node = as.scalar (cur_nodes_[1,i8]);
- cur_tree = as.scalar (cur_nodes_[2,i8]);
-
- # select sample features WOR
- feature_samples = sample (num_features_total, num_feature_samples);
- feature_samples = order (target = feature_samples, by = 1);
- num_scale_feature_samples = sum (ppred (feature_samples, num_scale_features, "<="));
- num_cat_feature_samples = num_feature_samples - num_scale_feature_samples;
-
- # --- find best split ---
- # samples that reach cur_node
- Ix = ppred (L_small[,cur_tree], cur_node, "==");
- cur_Y_bin = Y_bin_small * (Ix * C_small[,cur_tree]);
- label_counts_overall = colSums (cur_Y_bin);
-
- label_sum_overall = sum (label_counts_overall);
- label_dist_overall = label_counts_overall / label_sum_overall;
- if (imp == "entropy") {
- label_dist_zero = ppred (label_dist_overall, 0, "==");
- cur_impurity = - sum (label_dist_overall * log (label_dist_overall + label_dist_zero)); # / log (2);
- } else { # imp == "Gini"
- cur_impurity = sum (label_dist_overall * (1 - label_dist_overall));
- }
- best_scale_gain = 0;
- best_cat_gain = 0;
- if (num_scale_features > 0 & num_scale_feature_samples > 0) {
-
- scale_feature_samples = feature_samples[1:num_scale_feature_samples,];
-
- # main operation
- label_counts_left_scale = t (t (cur_Y_bin) %*% X_scale_ext_small);
-
- # compute left and right label distribution
- label_sum_left = rowSums (label_counts_left_scale);
- label_dist_left = label_counts_left_scale / label_sum_left;
- if (imp == "entropy") {
- label_dist_left = replace (target = label_dist_left, pattern = 0, replacement = 1);
- log_label_dist_left = log (label_dist_left); # / log (2)
- impurity_left_scale = - rowSums (label_dist_left * log_label_dist_left);
- } else { # imp == "Gini"
- impurity_left_scale = rowSums (label_dist_left * (1 - label_dist_left));
- }
- #
- label_counts_right_scale = - label_counts_left_scale + label_counts_overall;
- label_sum_right = rowSums (label_counts_right_scale);
- label_dist_right = label_counts_right_scale / label_sum_right;
- if (imp == "entropy") {
- label_dist_right = replace (target = label_dist_right, pattern = 0, replacement = 1);
- log_label_dist_right = log (label_dist_right); # log (2)
- impurity_right_scale = - rowSums (label_dist_right * log_label_dist_right);
- } else { # imp == "Gini"
- impurity_right_scale = rowSums (label_dist_right * (1 - label_dist_right));
- }
- I_gain_scale = cur_impurity - ( ( label_sum_left / label_sum_overall ) * impurity_left_scale + ( label_sum_right / label_sum_overall ) * impurity_right_scale);
-
- I_gain_scale = replace (target = I_gain_scale, pattern = "NaN", replacement = 0);
-
- # determine best feature to split on and the split value
- feature_start_ind = matrix (0, rows = 1, cols = num_scale_features);
- feature_start_ind[1,1] = 1;
- if (num_scale_features > 1) {
- feature_start_ind[1,2:num_scale_features] = cum_count_thresholds[1,1:(num_scale_features - 1)] + 1;
- }
- max_I_gain_found = 0;
- max_I_gain_found_ind = 0;
- best_i = 0;
-
- for (i in 1:num_scale_feature_samples) { # assuming feature_samples is 5x1
- cur_feature_samples_bin = as.scalar (scale_feature_samples[i,]);
- cur_start_ind = as.scalar (feature_start_ind[,cur_feature_samples_bin]);
- cur_end_ind = as.scalar (cum_count_thresholds[,cur_feature_samples_bin]);
- I_gain_portion = I_gain_scale[cur_start_ind:cur_end_ind,];
- cur_max_I_gain = max (I_gain_portion);
- cur_max_I_gain_ind = as.scalar (rowIndexMax (t (I_gain_portion)));
- if (cur_max_I_gain > max_I_gain_found) {
- max_I_gain_found = cur_max_I_gain;
- max_I_gain_found_ind = cur_max_I_gain_ind;
- best_i = i;
- }
- }
-
- best_scale_gain = max_I_gain_found;
- max_I_gain_ind_scale = max_I_gain_found_ind;
- best_scale_feature = 0;
- if (best_i > 0) {
- best_scale_feature = as.scalar (scale_feature_samples[best_i,]);
- }
- best_scale_split = max_I_gain_ind_scale;
- if (best_scale_feature > 1) {
- best_scale_split = best_scale_split + as.scalar(cum_count_thresholds[,(best_scale_feature - 1)]);
- }
- }
-
- if (num_cat_features > 0 & num_cat_feature_samples > 0){
-
- cat_feature_samples = feature_samples[(num_scale_feature_samples + 1):(num_scale_feature_samples + num_cat_feature_samples),] - num_scale_features;
-
- # initialization
- split_values_bin = matrix (0, rows = 1, cols = distinct_values_overall);
- split_values = split_values_bin;
- split_values_offset = matrix (0, rows = 1, cols = num_cat_features);
- I_gains = split_values_offset;
- impurities_left = split_values_offset;
- impurities_right = split_values_offset;
- best_label_counts_left = matrix (0, rows = num_cat_features, cols = num_classes);
- best_label_counts_right = matrix (0, rows = num_cat_features, cols = num_classes);
-
- # main operation
- label_counts = t (t (cur_Y_bin) %*% X_cat_small);
-
- parfor (i9 in 1:num_cat_feature_samples, check = 0){
-
- cur_cat_feature = as.scalar (cat_feature_samples[i9,1]);
- start_ind = 1;
- if (cur_cat_feature > 1) {
- start_ind = start_ind + as.scalar (distinct_values_offset[(cur_cat_feature - 1),]);
- }
- offset = as.scalar (distinct_values[1,cur_cat_feature]);
-
- cur_label_counts = label_counts[start_ind:(start_ind + offset - 1),];
-
- label_sum = rowSums (cur_label_counts);
- label_dist = cur_label_counts / label_sum;
- if (imp == "entropy") {
- label_dist = replace (target = label_dist, pattern = 0, replacement = 1);
- log_label_dist = log (label_dist); # / log(2)
- impurity = - rowSums (label_dist * log_label_dist);
- impurity = replace (target = impurity, pattern = "NaN", replacement = 1/0);
- } else { # imp == "Gini"
- impurity = rowSums (label_dist * (1 - label_dist));
- }
-
- # sort cur feature by impurity
- cur_distinct_values = seq (1, nrow (cur_label_counts));
- cur_distinct_values_impurity = append (cur_distinct_values, impurity);
- cur_feature_sorted = order (target = cur_distinct_values_impurity, by = 2, decreasing = FALSE);
- P = table (cur_distinct_values, cur_feature_sorted); # permutation matrix
- label_counts_sorted = P %*% cur_label_counts;
-
- # compute left and right label distribution
- label_counts_left = cumsum (label_counts_sorted);
-
- label_sum_left = rowSums (label_counts_left);
- label_dist_left = label_counts_left / label_sum_left;
- label_dist_left = replace (target = label_dist_left, pattern = "NaN", replacement = 1);
- if (imp == "entropy") {
- label_dist_left = replace (target = label_dist_left, pattern = 0, replacement = 1);
- log_label_dist_left = log (label_dist_left); # / log(2)
- impurity_left = - rowSums (label_dist_left * log_label_dist_left);
- } else { # imp == "Gini"
- impurity_left = rowSums (label_dist_left * (1 - label_dist_left));
- }
- #
- label_counts_right = - label_counts_left + label_counts_overall;
- label_sum_right = rowSums (label_counts_right);
- label_dist_right = label_counts_right / label_sum_right;
- label_dist_right = replace (target = label_dist_right, pattern = "NaN", replacement = 1);
- if (imp == "entropy") {
- label_dist_right = replace (target = label_dist_right, pattern = 0, replacement = 1);
- log_label_dist_right = log (label_dist_right); # / log (2)
- impurity_right = - rowSums (label_dist_right * log_label_dist_right);
- } else { # imp == "Gini"
- impurity_right = rowSums (label_dist_right * (1 - label_dist_right));
- }
- I_gain = cur_impurity - ( ( label_sum_left / label_sum_overall ) * impurity_left + ( label_sum_right / label_sum_overall ) * impurity_right);
-
- Ix_label_sum_left_zero = ppred (label_sum_left, 0, "==");
- Ix_label_sum_right_zero = ppred (label_sum_right, 0, "==");
- Ix_label_sum_zero = Ix_label_sum_left_zero * Ix_label_sum_right_zero;
- I_gain = I_gain * (1 - Ix_label_sum_zero);
-
- I_gain[nrow (I_gain),] = 0; # last entry invalid
-
- max_I_gain_ind = as.scalar (rowIndexMax (t (I_gain)));
-
- split_values[1, start_ind:(start_ind + max_I_gain_ind - 1)] = t (cur_feature_sorted[1:max_I_gain_ind,1]);
- for (i10 in 1:max_I_gain_ind) {
- ind = as.scalar (cur_feature_sorted[i10,1]);
- if (ind == 1) {
- split_values_bin[1,start_ind] = 1.0;
- } else {
- split_values_bin[1,(start_ind + ind - 1)] = 1.0;
- }
- }
- split_values_offset[1,cur_cat_feature] = max_I_gain_ind;
-
- I_gains[1,cur_cat_feature] = max (I_gain);
-
- impurities_left[1,cur_cat_feature] = as.scalar (impurity_left[max_I_gain_ind,]);
- impurities_right[1,cur_cat_feature] = as.scalar (impurity_right[max_I_gain_ind,]);
- best_label_counts_left[cur_cat_feature,] = label_counts_left[max_I_gain_ind,];
- best_label_counts_right[cur_cat_feature,] = label_counts_right[max_I_gain_ind,];
- }
-
- # determine best feature to split on and the split values
- best_cat_feature = as.scalar (rowIndexMax (I_gains));
- best_cat_gain = max (I_gains);
- start_ind = 1;
- if (best_cat_feature > 1) {
- start_ind = start_ind + as.scalar (distinct_values_offset[(best_cat_feature - 1),]);
- }
- offset = as.scalar (distinct_values[1,best_cat_feature]);
- best_split_values_bin = split_values_bin[1, start_ind:(start_ind + offset - 1)];
- }
-
- # compare best scale feature to best cat. feature and pick the best one
- if (num_scale_features > 0 & num_scale_feature_samples > 0 & best_scale_gain >= best_cat_gain & best_scale_gain > 0) {
-
- # --- update model ---
- cur_F[1,i8] = best_scale_feature;
- cur_F[2,i8] = 1;
- cur_F[3,i8] = 1;
- cur_S[1,(i8 - 1) * distinct_values_max + 1] = thresholds[max_I_gain_ind_scale, best_scale_feature];
-
- left_child = 2 * (cur_node - 1) + 1 + 1;
- right_child = 2 * (cur_node - 1) + 2 + 1;
-
- # samples going to the left subtree
- Ix_left = X_scale_ext_small[, best_scale_split];
-
- Ix_left = Ix * Ix_left;
- Ix_right = Ix * (1 - Ix_left);
-
- L_small[,cur_tree] = L_small[,cur_tree] * (1 - Ix_left) + (Ix_left * left_child);
- L_small[,cur_tree] = L_small[,cur_tree] * (1 - Ix_right) + (Ix_right * right_child);
-
- left_child_size = sum (Ix_left * C_small[,cur_tree]);
- right_child_size = sum (Ix_right * C_small[,cur_tree]);
-
- # check if left or right child is a leaf
- left_pure = FALSE;
- right_pure = FALSE;
- cur_impurity_left = as.scalar(impurity_left_scale[best_scale_split,]);
- cur_impurity_right = as.scalar(impurity_right_scale[best_scale_split,]);
- if ( (left_child_size <= num_leaf | cur_impurity_left == 0 | level_ == depth) &
- (right_child_size <= num_leaf | cur_impurity_right == 0 | level_ == depth) ) { # both left and right nodes are leaf
-
- cur_label_counts_left = label_counts_left_scale[best_scale_split,];
- cur_NC[1,(2 * (i8 - 1) + 1)] = left_child;
- cur_NC[2,(2 * (i8 - 1) + 1)] = cur_tree;
- cur_NC[3,(2 * (i8 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
- left_pure = TRUE;
- # compute number of misclassified points
- cur_NC[4,(2 * (i8 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
-
- cur_label_counts_right = label_counts_overall - cur_label_counts_left;
- cur_NC[1,(2 * i8)] = right_child;
- cur_NC[2,(2 * i8)] = cur_tree;
- cur_NC[3,(2 * i8)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
- right_pure = TRUE;
- # compute number of misclassified points
- cur_NC[4,(2 * i8)] = right_child_size - max (cur_label_counts_right);
-
- } else if (left_child_size <= num_leaf | cur_impurity_left == 0 | level_ == depth) {
-
- cur_label_counts_left = label_counts_left_scale[best_scale_split,];
- cur_NC[1,(2 * (i8 - 1) + 1)] = left_child;
- cur_NC[2,(2 * (i8 - 1) + 1)] = cur_tree;
- cur_NC[3,(2 * (i8 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
- left_pure = TRUE;
- # compute number of misclassified points
- cur_NC[4,(2 * (i8 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
-
- } else if (right_child_size <= num_leaf | cur_impurity_right == 0 | level_ == depth) {
-
- cur_label_counts_right = label_counts_right_scale[best_scale_split,];
- cur_NC[1,(2 * i8)] = right_child;
- cur_NC[2,(2 * i8)] = cur_tree;
- cur_NC[3,(2 * i8)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
- right_pure = TRUE;
- # compute number of misclassified points
- cur_NC[4,(2 * i8)] = right_child_size - max (cur_label_counts_right);
-
- }
-
- } else if (num_cat_features > 0 & num_cat_feature_samples > 0 & best_cat_gain > 0) {
-
- # --- update model ---
- cur_F[1,i8] = best_cat_feature;
- cur_F[2,i8] = 2;
- offset_nonzero = as.scalar (split_values_offset[1,best_cat_feature]);
- S_start_ind = (i8 - 1) * distinct_values_max + 1;
- cur_F[3,i8] = offset_nonzero;
- cur_S[1,S_start_ind:(S_start_ind + offset_nonzero - 1)] = split_values[1,start_ind:(start_ind + offset_nonzero - 1)];
-
- left_child = 2 * (cur_node - 1) + 1 + 1;
- right_child = 2 * (cur_node - 1) + 2 + 1;
-
- # samples going to the left subtree
- Ix_left = rowSums (X_cat_small[,start_ind:(start_ind + offset - 1)] * best_split_values_bin);
- Ix_left = ppred (Ix_left, 1, ">=");
-
- Ix_left = Ix * Ix_left;
- Ix_right = Ix * (1 - Ix_left);
-
- L_small[,cur_tree] = L_small[,cur_tree] * (1 - Ix_left) + (Ix_left * left_child);
- L_small[,cur_tree] = L_small[,cur_tree] * (1 - Ix_right) + (Ix_right * right_child);
-
- left_child_size = sum (Ix_left * C_small[,cur_tree]);
- right_child_size = sum (Ix_right * C_small[,cur_tree]);
-
- # check if left or right child is a leaf
- left_pure = FALSE;
- right_pure = FALSE;
- cur_impurity_left = as.scalar(impurities_left[,best_cat_feature]);
- cur_impurity_right = as.scalar(impurities_right[,best_cat_feature]);
- if ( (left_child_size <= num_leaf | cur_impurity_left == 0 | level_ == depth) &
- (right_child_size <= num_leaf | cur_impurity_right == 0 | level_ == depth) ) { # both left and right nodes are leaf
-
- cur_label_counts_left = best_label_counts_left[best_cat_feature,];
- cur_NC[1,(2 * (i8 - 1) + 1)] = left_child;
- cur_NC[2,(2 * (i8 - 1) + 1)] = cur_tree;
- cur_NC[3,(2 * (i8 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
- left_pure = TRUE;
- # compute number of misclassified points
- cur_NC[4,(2 * (i8 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
-
- cur_label_counts_right = label_counts_overall - cur_label_counts_left;
- cur_NC[1,(2 * i8)] = right_child;
- cur_NC[2,(2 * i8)] = cur_tree;
- cur_NC[3,(2 * i8)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
- right_pure = TRUE;
- # compute number of misclassified points
- cur_NC[4,(2 * i8)] = right_child_size - max (cur_label_counts_right);
-
- } else if (left_child_size <= num_leaf | cur_impurity_left == 0 | level_ == depth) {
-
- cur_label_counts_left = best_label_counts_left[best_cat_feature,];
- cur_NC[1,(2 * (i8 - 1) + 1)] = left_child;
- cur_NC[2,(2 * (i8 - 1) + 1)] = cur_tree;
- cur_NC[3,(2 * (i8 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
- left_pure = TRUE;
- # compute number of misclassified points
- cur_NC[4,(2 * (i8 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
-
- } else if (right_child_size <= num_leaf | cur_impurity_right == 0 | level_ == depth) {
- cur_label_counts_right = best_label_counts_right[best_cat_feature,];
- cur_NC[1,(2 * i8)] = right_child;
- cur_NC[2,(2 * i8)] = cur_tree;
- cur_NC[3,(2 * i8)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
- right_pure = TRUE;
- # compute number of misclassified points
- cur_NC[4,(2 * i8)] = right_child_size - max (cur_label_counts_right);
-
- }
- } else {
-
- print ("NUMBER OF SAMPLES AT NODE " + cur_node + " in tree " + cur_tree + " CANNOT BE REDUCED TO MATCH " + num_leaf + ". THIS NODE IS DECLARED AS LEAF!");
- right_pure = TRUE;
- left_pure = TRUE;
- cur_NC[1,(2 * (i8 - 1) + 1)] = cur_node;
- cur_NC[2,(2 * (i8 - 1) + 1)] = cur_tree;
- class_label = as.scalar (rowIndexMax (label_counts_overall));
- cur_NC[3,(2 * (i8 - 1) + 1)] = class_label;
- cur_NC[4,(2 * (i8 - 1) + 1)] = label_sum_overall - max (label_counts_overall);
- cur_NC[5,(2 * (i8 - 1) + 1)] = 1; # special leaf
-
- }
-
- # add nodes to Q
- if (!left_pure) {
- cur_Q[1,(2 * (i8 - 1)+ 1)] = left_child;
- cur_Q[2,(2 * (i8 - 1)+ 1)] = cur_tree;
- }
- if (!right_pure) {
- cur_Q[1,(2 * i8)] = right_child;
- cur_Q[2,(2 * i8)] = cur_tree;
- }
- }
-
- cur_Q = removeEmpty (target = cur_Q, margin = "cols");
- Q = append (Q, cur_Q);
- NC = append (NC, cur_NC);
- F = append (F, cur_F);
- S = append (S, cur_S);
-
- num_cur_nodes_pre = 2 * num_cur_nodes;
- if (as.scalar (cur_Q[1,1]) == 0) {
- num_cur_nodes = 0;
- } else {
- cur_nodes_ = cur_Q;
- num_cur_nodes = ncol (cur_Q);
- }
- }
-
- cur_Q_small[,start_ind_global:(start_ind_global + ncol (Q) - 1)] = Q;
- cur_NC_small[,start_ind_global:(start_ind_global + ncol (NC) - 1)] = NC;
- cur_F_small[,start_ind_global:(start_ind_global + ncol (F) - 1)] = F;
- cur_S_small[,start_ind_S_global:(start_ind_S_global + ncol (S) - 1)] = S;
- }
-
- ##### PREPARE MODEL FOR SMALL NODES
- if (num_cur_nodes_small > 0) { # small nodes already processed
- cur_Q_small = removeEmpty (target = cur_Q_small, margin = "cols");
- if (as.scalar (cur_Q_small[1,1]) != 0) Q_small = append (Q_small, cur_Q_small);
- cur_NC_small = removeEmpty (target = cur_NC_small, margin = "cols");
- if (as.scalar (cur_NC_small[1,1]) != 0) NC_small = append (NC_small, cur_NC_small);
-
- cur_F_small = removeEmpty (target = cur_F_small, margin = "cols"); #
- if (as.scalar (cur_F_small[1,1]) != 0) F_small = append (F_small, cur_F_small);
- cur_S_small = removeEmpty (target = cur_S_small, margin = "cols"); #
- if (as.scalar (cur_S_small[1,1]) != 0) S_small = append (S_small, cur_S_small);
-
- num_cur_nodes_small = 0; # reset
- }
-
- print (" --- end level " + level + ", remaining no. of LARGE nodes to expand " + num_cur_nodes_large + " --- ");
-}
-
-#### prepare model
-print ("PREPARING MODEL...")
-### large nodes
-if (as.scalar (Q_large[1,1]) == 0 & ncol (Q_large) > 1) {
- Q_large = Q_large[,2:ncol (Q_large)];
-}
-if (as.scalar (NC_large[1,1]) == 0 & ncol (NC_large) > 1) {
- NC_large = NC_large[,2:ncol (NC_large)];
-}
-if (as.scalar (S_large[1,1]) == 0 & ncol (S_large) > 1) {
- S_large = S_large[,2:ncol (S_large)];
-}
-if (as.scalar (F_large[1,1]) == 0 & ncol (F_large) > 1) {
- F_large = F_large[,2:ncol (F_large)];
-}
-### small nodes
-if (as.scalar (Q_small[1,1]) == 0 & ncol (Q_small) > 1) {
- Q_small = Q_small[,2:ncol (Q_small)];
-}
-if (as.scalar (NC_small[1,1]) == 0 & ncol (NC_small) > 1) {
- NC_small = NC_small[,2:ncol (NC_small)];
-}
-if (as.scalar (S_small[1,1]) == 0 & ncol (S_small) > 1) {
- S_small = S_small[,2:ncol (S_small)];
-}
-if (as.scalar (F_small[1,1]) == 0 & ncol (F_small) > 1) {
- F_small = F_small[,2:ncol (F_small)];
-}
-
-# check for special leaves and if there are any remove them from Q_large and Q_small
-special_large_leaves_ind = NC_large[5,];
-num_special_large_leaf = sum (special_large_leaves_ind);
-if (num_special_large_leaf > 0) {
- print ("PROCESSING " + num_special_large_leaf + " SPECIAL LARGE LEAVES...");
- special_large_leaves = removeEmpty (target = NC_large[1:2,] * special_large_leaves_ind, margin = "cols");
- large_internal_ind = 1 - colSums (outer (t (special_large_leaves[1,]), Q_large[1,], "==") * outer (t (special_large_leaves[2,]), Q_large[2,], "=="));
- Q_large = removeEmpty (target = Q_large * large_internal_ind, margin = "cols");
- F_large = removeEmpty (target = F_large, margin = "cols"); # remove special leaves from F
-}
-
-special_small_leaves_ind = NC_small[5,];
-num_special_small_leaf = sum (special_small_leaves_ind);
-if (num_special_small_leaf > 0) {
- print ("PROCESSING " + num_special_small_leaf + " SPECIAL SMALL LEAVES...");
- special_small_leaves = removeEmpty (target = NC_small[1:2,] * special_small_leaves_ind, margin = "cols");
- small_internal_ind = 1 - colSums (outer (t (special_small_leaves[1,]), Q_small[1,], "==") * outer (t (special_small_leaves[2,]), Q_small[2,], "=="));
- Q_small = removeEmpty (target = Q_small * small_internal_ind, margin = "cols");
- F_small = removeEmpty (target = F_small, margin = "cols"); # remove special leaves from F
-}
-
-# model corresponding to large internal nodes
-no_large_internal_node = FALSE;
-if (as.scalar (Q_large[1,1]) != 0) {
- print ("PROCESSING LARGE INTERNAL NODES...");
- num_large_internal = ncol (Q_large);
- max_offset = max (max (F_large[3,]), max (F_small[3,]));
- M1_large = matrix (0, rows = 6 + max_offset, cols = num_large_internal);
- M1_large[1:2,] = Q_large;
- M1_large[4:6,] = F_large;
- # process S_large
- cum_offsets_large = cumsum (t (F_large[3,]));
- parfor (it in 1:num_large_internal, check = 0) {
- start_ind = 1;
- if (it > 1) {
- start_ind = start_ind + as.scalar (cum_offsets_large[(it - 1),]);
- }
- offset = as.scalar (F_large[3,it]);
- M1_large[7:(7 + offset - 1),it] = t (S_large[1,start_ind:(start_ind + offset - 1)]);
- }
-} else {
- print ("No LARGE internal nodes available");
- no_large_internal_node = TRUE;
-}
-
-# model corresponding to small internal nodes
-no_small_internal_node = FALSE;
-if (as.scalar (Q_small[1,1]) != 0) {
- print ("PROCESSING SMALL INTERNAL NODES...");
- num_small_internal = ncol (Q_small);
- M1_small = matrix (0, rows = 6 + max_offset, cols = num_small_internal);
- M1_small[1:2,] = Q_small;
- M1_small[4:6,] = F_small;
- # process S_small
- cum_offsets_small = cumsum (t (F_small[3,]));
- parfor (it in 1:num_small_internal, check = 0) {
- start_ind = 1;
- if (it > 1) {
- start_ind = start_ind + as.scalar (cum_offsets_small[(it - 1),]);
- }
- offset = as.scalar (F_small[3,it]);
- M1_small[7:(7 + offset - 1),it] = t (S_small[1,start_ind:(start_ind + offset - 1)]);
- }
-} else {
- print ("No SMALL internal nodes available");
- no_small_internal_node = TRUE;
-}
-
-# model corresponding to large leaf nodes
-no_large_leaf_node = FALSE;
-if (as.scalar (NC_large[1,1]) != 0) {
- print ("PROCESSING LARGE LEAF NODES...");
- num_large_leaf = ncol (NC_large);
- M2_large = matrix (0, rows = 6 + max_offset, cols = num_large_leaf);
- M2_large[1:2,] = NC_large[1:2,];
- M2_large[5:7,] = NC_large[3:5,];
-} else {
- print ("No LARGE leaf nodes available");
- no_large_leaf_node = TRUE;
-}
-
-# model corresponding to small leaf nodes
-no_small_leaf_node = FALSE;
-if (as.scalar (NC_small[1,1]) != 0) {
- print ("PROCESSING SMALL LEAF NODES...");
- num_small_leaf = ncol (NC_small);
- M2_small = matrix (0, rows = 6 + max_offset, cols = num_small_leaf);
- M2_small[1:2,] = NC_small[1:2,];
- M2_small[5:7,] = NC_small[3:5,];
-} else {
- print ("No SMALL leaf nodes available");
- no_small_leaf_node = TRUE;
-}
-
-if (no_large_internal_node) {
- M1 = M1_small;
-} else if (no_small_internal_node) {
- M1 = M1_large;
-} else {
- M1 = append (M1_large, M1_small);
-}
-
-if (no_large_leaf_node) {
- M2 = M2_small;
-} else if (no_small_leaf_node) {
- M2 = M2_large;
-} else {
- M2 = append (M2_large, M2_small);
-}
-
-M = append (M1, M2);
-M = t (order (target = t (M), by = 1)); # sort by node id
-M = t (order (target = t (M), by = 2)); # sort by tree id
-
-
-# removing redundant subtrees
-if (ncol (M) > 1) {
- print ("CHECKING FOR REDUNDANT SUBTREES...");
- red_leaf = TRUE;
- process_red_subtree = FALSE;
- invalid_node_ind = matrix (0, rows = 1, cols = ncol (M));
- while (red_leaf & ncol (M) > 1) {
- leaf_ind = ppred (M[4,], 0, "==");
- labels = M[5,] * leaf_ind;
- tree_ids = M[2,];
- parent_ids = floor (M[1,] /2);
- cond1 = ppred (labels[,1:(ncol (M) - 1)], labels[,2:ncol (M)], "=="); # siebling leaves with same label
- cond2 = ppred (parent_ids[,1:(ncol (M) - 1)], parent_ids[,2:ncol (M)], "=="); # same parents
- cond3 = ppred (tree_ids[,1:(ncol (M) - 1)], tree_ids[,2:ncol (M)], "=="); # same tree
- red_leaf_ind = cond1 * cond2 * cond3 * leaf_ind[,2:ncol (M)];
-
- if (sum (red_leaf_ind) > 0) { # if redundant subtrees exist
- red_leaf_ids = M[1:2,2:ncol (M)] * red_leaf_ind;
- red_leaf_ids_nonzero = removeEmpty (target = red_leaf_ids, margin = "cols");
- parfor (it in 1:ncol (red_leaf_ids_nonzero), check = 0){
- cur_right_leaf_id = as.scalar (red_leaf_ids_nonzero[1,it]);
- cur_parent_id = floor (cur_right_leaf_id / 2);
- cur_tree_id = as.scalar (red_leaf_ids_nonzero[2,it]);
- cur_right_leaf_pos = as.scalar (rowIndexMax (ppred (M[1,], cur_right_leaf_id, "==") * ppred (M[2,], cur_tree_id, "==")));
- cur_parent_pos = as.scalar(rowIndexMax (ppred (M[1,], cur_parent_id, "==") * ppred (M[2,], cur_tree_id, "==")));
- M[3:nrow (M), cur_parent_pos] = M[3:nrow (M), cur_right_leaf_pos];
- M[4,cur_right_leaf_pos] = -1;
- M[4,cur_right_leaf_pos - 1] = -1;
- invalid_node_ind[1,cur_right_leaf_pos] = 1;
- invalid_node_ind[1,cur_right_leaf_pos - 1] = 1;
- }
- process_red_subtree = TRUE;
- } else {
- red_leaf = FALSE;
- }
- }
-
- if (process_red_subtree) {
- print ("REMOVING REDUNDANT SUBTREES...");
- valid_node_ind = ppred (invalid_node_ind, 0, "==");
- M = removeEmpty (target = M * valid_node_ind, margin = "cols");
- }
-}
-
-internal_ind = ppred (M[4,], 0, ">");
-internal_ids = M[1:2,] * internal_ind;
-internal_ids_nonzero = removeEmpty (target = internal_ids, margin = "cols");
-if (as.scalar (internal_ids_nonzero[1,1]) > 0) { # if internal nodes exist
- a1 = internal_ids_nonzero[1,];
- a2 = internal_ids_nonzero[1,] * 2;
- vcur_tree_id = internal_ids_nonzero[2,];
- pos_a1 = rowIndexMax( outer(t(a1), M[1,], "==") * outer(t(vcur_tree_id), M[2,], "==") );
- pos_a2 = rowIndexMax( outer(t(a2), M[1,], "==") * outer(t(vcur_tree_id), M[2,], "==") );
- M[3,] = t(table(pos_a1, 1, pos_a2 - pos_a1, ncol(M), 1));
-}
-else {
- print ("All trees in the random forest contain only one leaf!");
-}
-
-if (fileC != " ") {
- write (C, fileC, format = fmtO);
-}
-write (M, fileM, format = fmtO);
+#-------------------------------------------------------------
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+#-------------------------------------------------------------
+
+#
+# THIS SCRIPT IMPLEMENTS CLASSIFICATION RANDOM FOREST WITH BOTH SCALE AND CATEGORICAL FEATURES
+#
+# INPUT PARAMETERS:
+# ---------------------------------------------------------------------------------------------
+# NAME TYPE DEFAULT MEANING
+# ---------------------------------------------------------------------------------------------
+# X String --- Location to read feature matrix X; note that X needs to be both recoded and dummy coded
+# Y String --- Location to read label matrix Y; note that Y needs to be both recoded and dummy coded
+# R String " " Location to read the matrix R which for each feature in X contains the following information
+# - R[,1]: column ids
+# - R[,2]: start indices
+# - R[,3]: end indices
+# If R is not provided by default all variables are assumed to be scale
+# bins Int 20 Number of equiheight bins per scale feature to choose thresholds
+# depth Int 25 Maximum depth of the learned tree
+# num_leaf Int 10 Number of samples when splitting stops and a leaf node is added
+# num_samples Int 3000 Number of samples at which point we switch to in-memory subtree building
+# num_trees Int 10 Number of trees to be learned in the random forest model
+# subsamp_rate Double 1.0 Parameter controlling the size of each tree in the forest; samples are selected from a
+# Poisson distribution with parameter subsamp_rate (the default value is 1.0)
+# feature_subset Double 0.5 Parameter that controls the number of feature used as candidates for splitting at each tree node
+# as a power of number of features in the dataset;
+# by default square root of features (i.e., feature_subset = 0.5) are used at each tree node
+# impurity String "Gini" Impurity measure: entropy or Gini (the default)
+# M String --- Location to write matrix M containing the learned tree
+# C String " " Location to write matrix C containing the number of times samples are chosen in each tree of the random forest
+# S_map String " " Location to write the mappings from scale feature ids to global feature ids
+# C_map String " " Location to write the mappings from categorical feature ids to global feature ids
+# fmt String "text" The output format of the model (matrix M), such as "text" or "csv"
+# ---------------------------------------------------------------------------------------------
+# OUTPUT:
+# Matrix M where each column corresponds to a node in the learned tree and each row contains the following information:
+# M[1,j]: id of node j (in a complete binary tree)
+# M[2,j]: tree id to which node j belongs
+# M[3,j]: Offset (no. of columns) to left child of j
+# M[4,j]: Feature index of the feature that node j looks at if j is an internal node, otherwise 0
+# M[5,j]: Type of the feature that node j looks at if j is an internal node: 1 for scale and 2 for categorical features,
+# otherwise the label that leaf node j is supposed to predict
+# M[6,j]: 1 if j is an internal node and the feature chosen for j is scale, otherwise the size of the subset of values
+# stored in rows 7,8,... if j is categorical
+# M[7:,j]: Only applicable for internal nodes. Threshold the example's feature value is compared to is stored at M[7,j] if the feature chosen for j is scale;
+# If the feature chosen for j is categorical rows 7,8,... depict the value subset chosen for j
+# -------------------------------------------------------------------------------------------
+# HOW TO INVOKE THIS SCRIPT - EXAMPLE:
+# hadoop jar SystemML.jar -f random-forest.dml -nvargs X=INPUT_DIR/X Y=INPUT_DIR/Y R=INPUT_DIR/R M=OUTPUT_DIR/model
+# bins=20 depth=25 num_leaf=10 num_samples=3000 num_trees=10 impurity=Gini fmt=csv
+
+
+# External function for binning
+binning = externalFunction(Matrix[Double] A, Integer binsize, Integer numbins) return (Matrix[Double] B, Integer numbinsdef)
+ implemented in (classname="org.apache.sysml.udf.lib.BinningWrapper",exectype="mem")
+
+
+# Default values of some parameters
+fileR = ifdef ($R, " ");
+fileC = ifdef ($C, " ");
+fileS_map = ifdef ($S_map, " ");
+fileC_map = ifdef ($C_map, " ");
+fileM = $M;
+num_bins = ifdef($bins, 20);
+depth = ifdef($depth, 25);
+num_leaf = ifdef($num_leaf, 10);
+num_trees = ifdef($num_trees, 1);
+threshold = ifdef ($num_samples, 3000);
+imp = ifdef($impurity, "Gini");
+rate = ifdef ($subsamp_rate, 1);
+fpow = ifdef ($feature_subset, 0.5);
+fmtO = ifdef($fmt, "text");
+
+X = read($X);
+Y_bin = read($Y);
+num_records = nrow (X);
+num_classes = ncol (Y_bin);
+
+# check if there is only one class label
+Y_bin_sum = sum (ppred (colSums (Y_bin), num_records, "=="));
+if (Y_bin_sum == 1) {
+ stop ("Y contains only one class label. No model will be learned!");
+} else if (Y_bin_sum > 1) {
+ stop ("Y is not properly dummy coded. Multiple columns of Y contain only ones!")
+}
+
+# split data into X_scale and X_cat
+if (fileR != " ") {
+ R = read (fileR);
+ R = order (target = R, by = 2); # sort by start indices
+ dummy_coded = ppred (R[,2], R[,3], "!=");
+ R_scale = removeEmpty (target = R[,2:3] * (1 - dummy_coded), margin = "rows");
+ R_cat = removeEmpty (target = R[,2:3] * dummy_coded, margin = "rows");
+ if (fileS_map != " ") {
+ scale_feature_mapping = removeEmpty (target = (1 - dummy_coded) * seq (1, nrow (R)), margin = "rows");
+ write (scale_feature_mapping, fileS_map, format = fmtO);
+ }
+ if (fileC_map != " ") {
+ cat_feature_mapping = removeEmpty (target = dummy_coded * seq (1, nrow (R)), margin = "rows");
+ write (cat_feature_mapping, fileC_map, format = fmtO);
+ }
+ sum_dummy = sum (dummy_coded);
+ if (sum_dummy == nrow (R)) { # all features categorical
+ print ("All features categorical");
+ num_cat_features = nrow (R_cat);
+ num_scale_features = 0;
+ X_cat = X;
+ distinct_values = t (R_cat[,2] - R_cat[,1] + 1);
+ distinct_values_max = max (distinct_values);
+ distinct_values_offset = cumsum (t (distinct_values));
+ distinct_values_overall = sum (distinct_values);
+ } else if (sum_dummy == 0) { # all features scale
+ print ("All features scale");
+ num_scale_features = ncol (X);
+ num_cat_features = 0;
+ X_scale = X;
+ distinct_values_max = 1;
+ } else { # some features scale some features categorical
+ num_cat_features = nrow (R_cat);
+ num_scale_features = nrow (R_scale);
+ distinct_values = t (R_cat[,2] - R_cat[,1] + 1);
+ distinct_values_max = max (distinct_values);
+ distinct_values_offset = cumsum (t (distinct_values));
+ distinct_values_overall = sum (distinct_values);
+
+ W = matrix (1, rows = num_cat_features, cols = 1) %*% matrix ("1 -1", rows = 1, cols = 2);
+ W = matrix (W, rows = 2 * num_cat_features, cols = 1);
+ if (as.scalar (R_cat[num_cat_features, 2]) == ncol (X)) {
+ W[2 * num_cat_features,] = 0;
+ }
+
+ last = ppred (R_cat[,2], ncol (X), "!=");
+ R_cat1 = (R_cat[,2] + 1) * last;
+ R_cat[,2] = (R_cat[,2] * (1 - last)) + R_cat1;
+ R_cat_vec = matrix (R_cat, rows = 2 * num_cat_features, cols = 1);
+
+ col_tab = table (R_cat_vec, 1, W, ncol (X), 1);
+ col_ind = cumsum (col_tab);
+
+ col_ind_cat = removeEmpty (target = col_ind * seq (1, ncol (X)), margin = "rows");
+ col_ind_scale = removeEmpty (target = (1 - col_ind) * seq (1, ncol (X)), margin = "rows");
+ X_cat = X %*% table (col_ind_cat, seq (1, nrow (col_ind_cat)), ncol (X), nrow (col_ind_cat));
+ X_scale = X %*% table (col_ind_scale, seq (1, nrow (col_ind_scale)), ncol (X), nrow (col_ind_scale));
+ }
+} else { # only scale features exist
+ print ("All features scale");
+ num_scale_features = ncol (X);
+ num_cat_features = 0;
+ X_scale = X;
+ distinct_values_max = 1;
+}
+
+if (num_scale_features > 0) {
+
+ print ("COMPUTING BINNING...");
+ bin_size = max (as.integer (num_records / num_bins), 1);
+ count_thresholds = matrix (0, rows = 1, cols = num_scale_features)
+ thresholds = matrix (0, rows = num_bins + 1, cols = num_scale_features)
+ parfor(i1 in 1:num_scale_features) {
+ col = order (target = X_scale[,i1], by = 1, decreasing = FALSE);
+ [col_bins, num_bins_defined] = binning (col, bin_size, num_bins);
+ count_thresholds[,i1] = num_bins_defined;
+ thresholds[,i1] = col_bins;
+ }
+
+ print ("PREPROCESSING SCALE FEATURE MATRIX...");
+ min_num_bins = min (count_thresholds);
+ max_num_bins = max (count_thresholds);
+ total_num_bins = sum (count_thresholds);
+ cum_count_thresholds = t (cumsum (t (count_thresholds)));
+ X_scale_ext = matrix (0, rows = num_records, cols = total_num_bins);
+ parfor (i2 in 1:num_scale_features, check = 0) {
+ Xi2 = X_scale[,i2];
+ count_threshold = as.scalar (count_thresholds[,i2]);
+ offset_feature = 1;
+ if (i2 > 1) {
+ offset_feature = offset_feature + as.integer (as.scalar (cum_count_thresholds[, (i2 - 1)]));
+ }
+
+ ti2 = t(thresholds[1:count_threshold, i2]);
+ X_scale_ext[,offset_feature:(offset_feature + count_threshold - 1)] = outer (Xi2, ti2, "<");
+ }
+}
+
+num_features_total = num_scale_features + num_cat_features;
+num_feature_samples = as.integer (floor (num_features_total ^ fpow));
+
+##### INITIALIZATION
+L = matrix (1, rows = num_records, cols = num_trees); # last visited node id for each training sample
+
+# create matrix of counts (generated by Poisson distribution) storing how many times each sample appears in each tree
+print ("CONPUTING COUNTS...");
+C = rand (rows = num_records, cols = num_trees, pdf = "poisson", lambda = rate);
+Ix_nonzero = ppred (C, 0, "!=");
+L = L * Ix_nonzero;
+total_counts = sum (C);
+
+
+# model
+# LARGE leaf nodes
+# NC_large[,1]: node id
+# NC_large[,2]: tree id
+# NC_large[,3]: class label
+# NC_large[,4]: no. of misclassified samples
+# NC_large[,5]: 1 if special leaf (impure and 3 samples at that leaf > threshold) or 0 otherwise
+NC_large = matrix (0, rows = 5, cols = 1);
+
+# SMALL leaf nodes
+# same schema as for LARGE leaf nodes (to be initialized)
+NC_small = matrix (0, rows = 5, cols = 1);
+
+# LARGE internal nodes
+# Q_large[,1]: node id
+# Q_large[,2]: tree id
+Q_large = matrix (0, rows = 2, cols = num_trees);
+Q_large[1,] = matrix (1, rows = 1, cols = num_trees);
+Q_large[2,] = t (seq (1, num_trees));
+
+# SMALL internal nodes
+# same schema as for LARGE internal nodes (to be initialized)
+Q_small = matrix (0, rows = 2, cols = 1);
+
+# F_large[,1]: feature
+# F_large[,2]: type
+# F_large[,3]: offset
+F_large = matrix (0, rows = 3, cols = 1);
+
+# same schema as for LARGE nodes
+F_small = matrix (0, rows = 3, cols = 1);
+
+# split points for LARGE internal nodes
+S_large = matrix (0, rows = 1, cols = 1);
+
+# split points for SMALL internal nodes
+S_small = matrix (0, rows = 1, cols = 1);
+
+# initialize queue
+cur_nodes_large = matrix (1, rows = 2, cols = num_trees);
+cur_nodes_large[2,] = t (seq (1, num_trees));
+
+num_cur_nodes_large = num_trees;
+num_cur_nodes_small = 0;
+level = 0;
+
+while ((num_cur_nodes_large + num_cur_nodes_small) > 0 & level < depth) {
+
+ level = level + 1;
+ print (" --- start level " + level + " --- ");
+
+ ##### PREPARE MODEL
+ if (num_cur_nodes_large > 0) { # LARGE nodes to process
+ cur_Q_large = matrix (0, rows = 2, cols = 2 * num_cur_nodes_large);
+ cur_NC_large = matrix (0, rows = 5, cols = 2 * num_cur_nodes_large);
+ cur_F_large = matrix (0, rows = 3, cols = num_cur_nodes_large);
+ cur_S_large = matrix (0, rows = 1, cols = num_cur_nodes_large * distinct_values_max);
+ cur_nodes_small = matrix (0, rows = 3, cols = 2 * num_cur_nodes_large);
+ }
+
+ ##### LOOP OVER LARGE NODES...
+ parfor (i6 in 1:num_cur_nodes_large, check = 0) {
+
+ cur_node = as.scalar (cur_nodes_large[1,i6]);
+ cur_tree = as.scalar (cur_nodes_large[2,i6]);
+
+ # select sample features WOR
+ feature_samples = sample (num_features_total, num_feature_samples);
+ feature_samples = order (target = feature_samples, by = 1);
+ num_scale_feature_samples = sum (ppred (feature_samples, num_scale_features, "<="));
+ num_cat_feature_samples = num_feature_samples - num_scale_feature_samples;
+
+ # --- find best split ---
+ # samples that reach cur_node
+ Ix = ppred (L[,cur_tree], cur_node, "==");
+
+ cur_Y_bin = Y_bin * (Ix * C[,cur_tree]);
+ label_counts_overall = colSums (cur_Y_bin);
+ label_sum_overall = sum (label_counts_overall);
+ label_dist_overall = label_counts_overall / label_sum_overall;
+
+ if (imp == "entropy") {
+ label_dist_zero = ppred (label_dist_overall, 0, "==");
+ cur_impurity = - sum (label_dist_overall * log (label_dist_overall + label_dist_zero)); # / log (2); # impurity before
+ } else { # imp == "Gini"
+ cur_impurity = sum (label_dist_overall * (1 - label_dist_overall)); # impurity before
+ }
+ best_scale_gain = 0;
+ best_cat_gain = 0;
+ if (num_scale_features > 0 & num_scale_feature_samples > 0) {
+
+ scale_feature_samples = feature_samples[1:num_scale_feature_samples,];
+
+ # main operation
+ label_counts_left_scale = t (t (cur_Y_bin) %*% X_scale_ext);
+
+ # compute left and right label distribution
+ label_sum_left = rowSums (label_counts_left_scale);
+ label_dist_left = label_counts_left_scale / label_sum_left;
+ if (imp == "entropy") {
+ label_dist_left = replace (target = label_dist_left, pattern = 0, replacement = 1);
+ log_label_dist_left = log (label_dist_left); # / log (2)
+ impurity_left_scale = - rowSums (label_dist_left * log_label_dist_left);
+ } else { # imp == "Gini"
+ impurity_left_scale = rowSums (label_dist_left * (1 - label_dist_left));
+ }
+ #
+ label_counts_right_scale = - label_counts_left_scale + label_counts_overall;
+ label_sum_right = rowSums (label_counts_right_scale);
+ label_dist_right = label_counts_right_scale / label_sum_right;
+ if (imp == "entropy") {
+ label_dist_right = replace (target = label_dist_right, pattern = 0, replacement = 1);
+ log_label_dist_right = log (label_dist_right); # / log (2)
+ impurity_right_scale = - rowSums (label_dist_right * log_label_dist_right);
+ } else { # imp == "Gini"
+ impurity_right_scale = rowSums (label_dist_right * (1 - label_dist_right));
+ }
+
+ I_gain_scale = cur_impurity - ( ( label_sum_left / label_sum_overall ) * impurity_left_scale + ( label_sum_right / label_sum_overall ) * impurity_right_scale);
+
+ I_gain_scale = replace (target = I_gain_scale, pattern = "NaN", replacement = 0);
+
+ # determine best feature to split on and the split value
+ feature_start_ind = matrix (0, rows = 1, cols = num_scale_features);
+ feature_start_ind[1,1] = 1;
+ if (num_scale_features > 1) {
+ feature_start_ind[1,2:num_scale_features] = cum_count_thresholds[1,1:(num_scale_features - 1)] + 1;
+ }
+ max_I_gain_found = 0;
+ max_I_gain_found_ind = 0;
+ best_i = 0;
+
+ for (i in 1:num_scale_feature_samples) { # assuming feature_samples is 5x1
+ cur_feature_samples_bin = as.scalar (scale_feature_samples[i,]);
+ cur_start_ind = as.scalar (feature_start_ind[,cur_feature_samples_bin]);
+ cur_end_ind = as.scalar (cum_count_thresholds[,cur_feature_samples_bin]);
+ I_gain_portion = I_gain_scale[cur_start_ind:cur_end_ind,];
+ cur_max_I_gain = max (I_gain_portion);
+ cur_max_I_gain_ind = as.scalar (rowIndexMax (t (I_gain_portion)));
+ if (cur_max_I_gain > max_I_gain_found) {
+ max_I_gain_found = cur_max_I_gain;
+ max_I_gain_found_ind = cur_max_I_gain_ind;
+ best_i = i;
+ }
+ }
+
+ best_scale_gain = max_I_gain_found;
+ max_I_gain_ind_scale = max_I_gain_found_ind;
+ best_scale_feature = 0;
+ if (best_i > 0) {
+ best_scale_feature = as.scalar (scale_feature_samples[best_i,]);
+ }
+ best_scale_split = max_I_gain_ind_scale;
+ if (best_scale_feature > 1) {
+ best_scale_split = best_scale_split + as.scalar(cum_count_thresholds[,(best_scale_feature - 1)]);
+ }
+ }
+
+ if (num_cat_features > 0 & num_cat_feature_samples > 0){
+
+ cat_feature_samples = feature_samples[(num_scale_feature_samples + 1):(num_scale_feature_samples + num_cat_feature_samples),] - num_scale_features;
+
+ # initialization
+ split_values_bin = matrix (0, rows = 1, cols = distinct_values_overall);
+ split_values = split_values_bin;
+ split_values_offset = matrix (0, rows = 1, cols = num_cat_features);
+ I_gains = split_values_offset;
+ impurities_left = split_values_offset;
+ impurities_right = split_values_offset;
+ best_label_counts_left = matrix (0, rows = num_cat_features, cols = num_classes);
+ best_label_counts_right = matrix (0, rows = num_cat_features, cols = num_classes);
+
+ # main operation
+ label_counts = t (t (cur_Y_bin) %*% X_cat);
+
+ parfor (i9 in 1:num_cat_feature_samples, check = 0){
+
+ cur_cat_feature = as.scalar (cat_feature_samples[i9,1]);
+ start_ind = 1;
+ if (cur_cat_feature > 1) {
+ start_ind = start_ind + as.scalar (distinct_values_offset[(cur_cat_feature - 1),]);
+ }
+ offset = as.scalar (distinct_values[1,cur_cat_feature]);
+
+ cur_label_counts = label_counts[start_ind:(start_ind + offset - 1),];
+
+ label_sum = rowSums (cur_label_counts);
+ label_dist = cur_label_counts / label_sum;
+ if (imp == "entropy") {
+ label_dist = replace (target = label_dist, pattern = 0, replacement = 1);
+ log_label_dist = log (label_dist); # / log(2)
+ impurity = - rowSums (label_dist * log_label_dist);
+ impurity = replace (target = impurity, pattern = "NaN", replacement = 1/0);
+ } else { # imp == "Gini"
+ impurity = rowSums (label_dist * (1 - label_dist));
+ }
+
+ # sort cur feature by impurity
+ cur_distinct_values = seq (1, nrow (cur_label_counts));
+ cur_distinct_values_impurity = append (cur_distinct_values, impurity);
+ cur_feature_sorted = order (target = cur_distinct_values_impurity, by = 2, decreasing = FALSE);
+ P = table (cur_distinct_values, cur_feature_sorted); # permutation matrix
+ label_counts_sorted = P %*% cur_label_counts;
+
+ # compute left and right label distribution
+ label_counts_left = cumsum (label_counts_sorted);
+
+ label_sum_left = rowSums (label_counts_left);
+ label_dist_left = label_counts_left / label_sum_left;
+ label_dist_left = replace (target = label_dist_left, pattern = "NaN", replacement = 1);
+ if (imp == "entropy") {
+ label_dist_left = replace (target = label_dist_left, pattern = 0, replacement = 1);
+ log_label_dist_left = log (label_dist_left); # / log(2)
+ impurity_left = - rowSums (label_dist_left * log_label_dist_left);
+ } else { # imp == "Gini"
+ impurity_left = rowSums (label_dist_left * (1 - label_dist_left));
+ }
+ #
+ label_counts_right = - label_counts_left + label_counts_overall;
+ label_sum_right = rowSums (label_counts_right);
+ label_dist_right = label_counts_right / label_sum_right;
+ label_dist_right = replace (target = label_dist_right, pattern = "NaN", replacement = 1);
+ if (imp == "entropy") {
+ label_dist_right = replace (target = label_dist_right, pattern = 0, replacement = 1);
+ log_label_dist_right = log (label_dist_right); # / log (2)
+ impurity_right = - rowSums (label_dist_right * log_label_dist_right);
+ } else { # imp == "Gini"
+ impurity_right = rowSums (label_dist_right * (1 - label_dist_right));
+ }
+ I_gain = cur_impurity - ( ( label_sum_left / label_sum_overall ) * impurity_left + ( label_sum_right / label_sum_overall ) * impurity_right);
+
+ Ix_label_sum_left_zero = ppred (label_sum_left, 0, "==");
+ Ix_label_sum_right_zero = ppred (label_sum_right, 0, "==");
+ Ix_label_sum_zero = Ix_label_sum_left_zero * Ix_label_sum_right_zero;
+ I_gain = I_gain * (1 - Ix_label_sum_zero);
+
+ I_gain[nrow (I_gain),] = 0; # last entry invalid
+
+ max_I_gain_ind = as.scalar (rowIndexMax (t (I_gain)));
+
+ split_values[1, start_ind:(start_ind + max_I_gain_ind - 1)] = t (cur_feature_sorted[1:max_I_gain_ind,1]);
+ for (i10 in 1:max_I_gain_ind) {
+ ind = as.scalar (cur_feature_sorted[i10,1]);
+ if (ind == 1) {
+ split_values_bin[1,start_ind] = 1.0;
+ } else {
+ split_values_bin[1,(start_ind + ind - 1)] = 1.0;
+ }
+ }
+ split_values_offset[1,cur_cat_feature] = max_I_gain_ind;
+
+ I_gains[1,cur_cat_feature] = max (I_gain);
+
+ impurities_left[1,cur_cat_feature] = as.scalar (impurity_left[max_I_gain_ind,]);
+ impurities_right[1,cur_cat_feature] = as.scalar (impurity_right[max_I_gain_ind,]);
+ best_label_counts_left[cur_cat_feature,] = label_counts_left[max_I_gain_ind,];
+ best_label_counts_right[cur_cat_feature,] = label_counts_right[max_I_gain_ind,];
+ }
+
+ # determine best feature to split on and the split values
+ best_cat_feature = as.scalar (rowIndexMax (I_gains));
+ best_cat_gain = max (I_gains);
+ start_ind = 1;
+ if (best_cat_feature > 1) {
+ start_ind = start_ind + as.scalar (distinct_values_offset[(best_cat_feature - 1),]);
+ }
+ offset = as.scalar (distinct_values[1,best_cat_feature]);
+ best_split_values_bin = split_values_bin[1, start_ind:(start_ind + offset - 1)];
+ }
+
+ # compare best scale feature to best cat. feature and pick the best one
+ if (num_scale_features > 0 & num_scale_feature_samples > 0 & best_scale_gain >= best_cat_gain & best_scale_gain > 0) {
+
+ # --- update model ---
+ cur_F_large[1,i6] = best_scale_feature;
+ cur_F_large[2,i6] = 1;
+ cur_F_large[3,i6] = 1;
+ cur_S_large[1,(i6 - 1) * distinct_values_max + 1] = thresholds[max_I_gain_ind_scale, best_scale_feature];
+
+ left_child = 2 * (cur_node - 1) + 1 + 1;
+ right_child = 2 * (cur_node - 1) + 2 + 1;
+
+ # samples going to the left subtree
+ Ix_left = X_scale_ext[,best_scale_split];
+
+ Ix_left = Ix * Ix_left;
+ Ix_right = Ix * (1 - Ix_left);
+
+ L[,cur_tree] = L[,cur_tree] * (1 - Ix_left) + (Ix_left * left_child);
+ L[,cur_tree] = L[,cur_tree] * (1 - Ix_right) + (Ix_right * right_child);
+
+ left_child_size = sum (Ix_left * C[,cur_tree]);
+ right_child_size = sum (Ix_right * C[,cur_tree]);
+
+ # check if left or right child is a leaf
+ left_pure = FALSE;
+ right_pure = FALSE;
+ cur_impurity_left = as.scalar(impurity_left_scale[best_scale_split,]); # max_I_gain_ind_scale
+ cur_impurity_right = as.scalar(impurity_right_scale[best_scale_split,]); # max_I_gain_ind_scale
+ if ( (left_child_size <= num_leaf | cur_impurity_left == 0 | (level == depth)) &
+ (right_child_size <= num_leaf | cur_impurity_right == 0 | (level == depth)) |
+ (left_child_size <= threshold & right_child_size <= threshold & (level == depth)) ) { # both left and right nodes are leaf
+
+ cur_label_counts_left = label_counts_left_scale[best_scale_split,]; # max_I_gain_ind_scale
+ cur_NC_large[1,(2 * (i6 - 1) + 1)] = left_child;
+ cur_NC_large[2,(2 * (i6 - 1) + 1)] = cur_tree;
+ cur_NC_large[3,(2 * (i6 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
+ left_pure = TRUE;
+ # compute number of misclassified points
+ cur_NC_large[4,(2 * (i6 - 1) + 1)] = left_child_size - max (cur_label_counts_left);
+
+ cur_label_counts_right = label_counts_overall - cur_label_counts_left;
+ cur_NC_large[1,(2 * i6)] = right_child;
+ cur_NC_large[2,(2 * i6)] = cur_tree;
+ cur_NC_large[3,(2 * i6)] = as.scalar( rowIndexMax (cur_label_counts_right)); # leaf class label
+ right_pure = TRUE;
+ # compute number of misclassified pints
+ cur_NC_large[4,(2 * i6)] = right_child_size - max (cur_label_counts_right);
+
+ } else if (left_child_size <= num_leaf | cur_impurity_left == 0 | (level == depth) |
+ (left_child_size <= threshold & (level == depth))) {
+
+ cur_label_counts_left = label_counts_left_scale[best_scale_split,]; # max_I_gain_ind_scale
+ cur_NC_large[1,(2 * (i6 - 1) + 1)] = left_child;
+ cur_NC_large[2,(2 * (i6 - 1) + 1)] = cur_tree;
+ cur_NC_large[3,(2 * (i6 - 1) + 1)] = as.scalar( rowIndexMax (cur_label_counts_left)); # leaf class label
+ left_pure = TRUE;
+ # compute number of misclassified points
+ cur_NC_large[4,(2 * (i
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