You are viewing a plain text version of this content. The canonical link for it is here.
Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2017/11/16 22:39:45 UTC

Build failed in Jenkins: cTAKES-trunk-Java-1.8 #30

See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/30/display/redirect?page=changes>

Changes:

[alexz] CTAKES-479: skip testCPE when UMLS credentials not exported as env vars

------------------------------------------
[...truncated 864.93 KB...]
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1609ms, dir size=18 MB
[INFO] Analysis reports compressed in 2871ms, zip size=7 MB
[INFO] Analysis report uploaded in 2185ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_G_ACxmqiS_xQKKaVN
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [04:47 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.064 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.655 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  7.764 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  3.901 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.973 s]
[INFO] ctakes-gui ......................................... SUCCESS [  5.606 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.632 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  5.203 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.293 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.581 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  3.756 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.346 s]
[INFO] Apache cTAKES dictionary lookup .................... FAILURE [  3.203 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  4.597 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.714 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  5.556 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.502 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  5.736 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  5.883 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  3.840 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  8.779 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  2.961 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  2.479 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  3.096 s]
[INFO] Apache cTAKES dictionary lookup fast ............... FAILURE [  1.773 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  3.855 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 24.067 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 51.913 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  8.989 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.695 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  2.814 s]
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.720 s]
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  3.119 s]
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.541 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [  3.064 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.505 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [  2.362 s]
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11:06 min
[INFO] Finished at: 2017-11-16T22:39:20Z
[INFO] Final Memory: 119M/1625M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[22,32] error: cannot find symbol
[ERROR] symbol:   class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[21,32] error: cannot find symbol
[ERROR] symbol:   class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
[ERROR] found:    Iterator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[ERROR] required: List<Integer>
[ERROR] found:    List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[87,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found:    List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[161,95] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found:    List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,23] [unchecked] unchecked method invocation: method addExcludeList in class LookupParseUtilitiesRefactor is applied to given types
[ERROR] required: DictionaryEngine,List<Element>
[ERROR] found: DictionaryEngine,List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,60] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found:    List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[205,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found:    List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found:    List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in interface Comparable
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol:   variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol:   variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol:   variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol:   variable UmlsEnvironmentConfiguration
[ERROR] location: class ThreadedUmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
[ERROR] K extends Object declared in interface Map
[ERROR] V extends Object declared in interface Map
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
[ERROR] found: List,OffsetComparator
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup-fast: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[21,32] error: cannot find symbol
[ERROR] symbol:   class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[187,77] error: cannot find symbol
[ERROR] symbol:   class UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/AbstractJCasTermAnnotator.java>:[106,54] [unchecked] unchecked cast
[ERROR] required: Class<? extends Annotation>
[ERROR] found:    Class<CAP#1>
[ERROR] where CAP#1 is a fresh type-variable:
[ERROR] CAP#1 extends Object from capture of ?
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[78,79] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[82,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[86,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[93,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[193,59] error: cannot find symbol
[ERROR] symbol:   variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[197,59] error: cannot find symbol
[ERROR] symbol:   variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java>:[223,12] [deprecation] DICTIONARY_DESCRIPTOR_KEY in JCasTermAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java>:[231,12] [deprecation] DICTIONARY_DESCRIPTOR_KEY in JCasTermAnnotator has been deprecated
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-dictionary-lookup
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
channel stopped

Build failed in Jenkins: cTAKES-trunk-Java-1.8 #37

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/37/display/redirect?page=changes>

Changes:

[tmill] Fix to patient-aware coreference with new API. Compiles and evaluates correctly.

------------------------------------------
[...truncated 1.55 MB...]
[INFO] -------------  Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4685ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=26ms
[INFO] Sensor JavaSquidSensor (done) | time=4722ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=35ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=1ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1789ms, dir size=18 MB
[INFO] Analysis reports compressed in 3835ms, zip size=7 MB
[INFO] Analysis report uploaded in 2571ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_LtiI5mqiS_xQKKaVk
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [05:13 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.837 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.762 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  9.659 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  4.953 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.558 s]
[INFO] ctakes-gui ......................................... SUCCESS [  4.812 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.382 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  5.999 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.525 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  4.042 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  4.098 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 48.318 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 26.431 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 53.254 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [01:30 min]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [01:03 min]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 54.430 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [01:09 min]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [01:27 min]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [01:09 min]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 47.567 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [01:08 min]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [01:28 min]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [01:32 min]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 52.649 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [01:10 min]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [01:42 min]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 18.834 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.519 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  6.729 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 36.039 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:08 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 56.172 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 35.137 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 42.828 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 35.904 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 52.429 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 31.857 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [  6.521 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.583 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [  4.519 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.957 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 22.086 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:45 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [03:07 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [02:16 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [01:17 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 01:01 h
[INFO] Finished at: 2017-11-17T20:49:56Z
[INFO] Final Memory: 173M/3345M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[21,45] error: package jdk.internal.org.objectweb.asm.commons does not exist
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org tmill@apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Build failed in Jenkins: cTAKES-trunk-Java-1.8 #36

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/36/display/redirect?page=changes>

Changes:

[alexz] CTAKES-458: Upgrade apache parent pom, fix apache-rat

------------------------------------------
[...truncated 1.40 MB...]
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=16ms
[INFO] -------------  Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4968ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=37ms
[INFO] Sensor JavaSquidSensor (done) | time=5011ms
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=2ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=1ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=49ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1651ms, dir size=18 MB
[INFO] Analysis reports compressed in 3485ms, zip size=7 MB
[INFO] Analysis report uploaded in 3159ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_LeSrTmqiS_xQKKaVj
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [05:28 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.545 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.815 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  7.547 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  4.040 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 35.919 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 17.500 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.542 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  5.401 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.356 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.879 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  5.323 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 23.779 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  4.909 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  5.804 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 30.590 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  5.061 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.595 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  4.576 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  5.056 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  3.563 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  6.717 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  3.065 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  2.731 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  4.455 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [  3.514 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.390 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 34.330 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 38.830 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  6.356 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.493 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  6.516 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 37.169 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [15:09 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  3.060 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 10.546 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.727 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [  6.313 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  3.006 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 39.656 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 46.725 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [01:22 min]
[INFO] ctakes-examples-res ................................ SUCCESS [ 36.332 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [01:09 min]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [03:39 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [03:27 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [04:36 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [01:35 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 54:30 min
[INFO] Finished at: 2017-11-17T19:37:03Z
[INFO] Final Memory: 156M/3368M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Build failed in Jenkins: cTAKES-trunk-Java-1.8 #35

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/35/display/redirect?page=changes>

Changes:

[seanfinan] Boyscouting, replace explicit maven-exec version numbers

[seanfinan] Add piper gui profile

------------------------------------------
[...truncated 1.58 MB...]
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=15ms
[INFO] -------------  Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5007ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=28ms
[INFO] Sensor JavaSquidSensor (done) | time=5043ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=35ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1724ms, dir size=18 MB
[INFO] Analysis reports compressed in 3537ms, zip size=7 MB
[INFO] Analysis report uploaded in 2776ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_K-1camqiS_xQKKaVh
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [05:00 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.830 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.871 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  8.680 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  4.407 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 24.226 s]
[INFO] ctakes-gui ......................................... SUCCESS [  4.688 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.416 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  5.581 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 15.705 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.781 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  4.231 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 21.187 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  4.990 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  5.475 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 50.276 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  6.140 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.533 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  4.807 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  5.048 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  3.503 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  7.230 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  3.046 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  2.543 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  3.968 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [  4.782 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.530 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 18.258 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 44.046 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  7.003 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.500 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  7.289 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.733 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:19 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 11.200 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  2.580 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [  7.264 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.914 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 20.588 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  2.729 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [  6.881 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.757 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [  3.233 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.507 s]
[INFO] ctakes-examples .................................... SUCCESS [  9.153 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 16.808 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:26 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [01:51 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [01:18 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 11.062 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 23.742 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 25:52 min
[INFO] Finished at: 2017-11-17T17:21:38Z
[INFO] Final Memory: 195M/3370M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-ytex-uima
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Build failed in Jenkins: cTAKES-trunk-Java-1.8 #34

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/34/display/redirect?page=changes>

Changes:

[seanfinan] Fix for typo (inattentiveness)

------------------------------------------
[...truncated 1.13 MB...]
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=12ms
[INFO] -------------  Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4350ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=28ms
[INFO] Sensor JavaSquidSensor (done) | time=4383ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=34ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1411ms, dir size=18 MB
[INFO] Analysis reports compressed in 2806ms, zip size=7 MB
[INFO] Analysis report uploaded in 3373ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_Ka0BBmqiS_xQKKaVf
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [04:11 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 55.381 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 38.848 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [01:12 min]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 39.740 s]
[INFO] Apache cTAKES core ................................. SUCCESS [03:45 min]
[INFO] ctakes-gui ......................................... SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [01:10 min]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 52.283 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [01:20 min]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 13.555 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [  9.676 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  4.862 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  4.747 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 30.750 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  4.817 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.499 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  4.650 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  4.780 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  4.752 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  7.860 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  3.073 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 14.380 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  3.398 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [  3.354 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.262 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.007 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 41.665 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  6.191 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.435 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  6.427 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.245 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:57 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [  9.176 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  2.534 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [  6.668 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.547 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [  6.279 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  2.801 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [  7.026 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.509 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [  3.387 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.447 s]
[INFO] ctakes-examples .................................... SUCCESS [  8.133 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 19.406 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 16.345 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [  9.137 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [  7.138 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 30:29 min
[INFO] Finished at: 2017-11-17T14:39:46Z
[INFO] Final Memory: 161M/3369M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Build failed in Jenkins: cTAKES-trunk-Java-1.8 #33

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/33/display/redirect>

------------------------------------------
[...truncated 1.40 MB...]
[INFO] Sensor CPD Block Indexer (done) | time=19ms
[INFO] -------------  Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4899ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=44ms
[INFO] Sensor JavaSquidSensor (done) | time=4950ms
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=1ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=22ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=63ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1576ms, dir size=18 MB
[INFO] Analysis reports compressed in 3415ms, zip size=7 MB
[INFO] Analysis report uploaded in 3024ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_KRFLRmqiS_xQKKaVe
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [04:51 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.729 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.930 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  7.377 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  3.930 s]
[INFO] Apache cTAKES core ................................. SUCCESS [01:13 min]

[INFO] ctakes-gui ......................................... SUCCESS [  4.199 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 16.068 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  5.081 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.677 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.972 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  3.978 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 11.761 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  5.477 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  6.280 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 29.047 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 22.666 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 20.604 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 19.684 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 22.288 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 19.059 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 20.228 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 18.837 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 18.085 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 21.574 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 21.398 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 34.779 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [01:15 min]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [01:10 min]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 37.324 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 17.478 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 18.566 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 52.661 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [16:00 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 19.843 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 57.911 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 18.736 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 53.495 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 35.011 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 52.183 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 22.280 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 18.380 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 36.444 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 34.157 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [03:02 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [02:42 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [02:11 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 38.990 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 56:17 min
[INFO] Finished at: 2017-11-17T14:00:16Z
[INFO] Final Memory: 158M/3364M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Build failed in Jenkins: cTAKES-trunk-Java-1.8 #32

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/32/display/redirect>

------------------------------------------
[...truncated 1.12 MB...]
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=12ms
[INFO] -------------  Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4147ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=24ms
[INFO] Sensor JavaSquidSensor (done) | time=4177ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=33ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1349ms, dir size=18 MB
[INFO] Analysis reports compressed in 3064ms, zip size=7 MB
[INFO] Analysis report uploaded in 2305ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_HccI5mqiS_xQKKaVQ
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [04:07 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.132 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.632 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  6.372 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  3.393 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 21.627 s]
[INFO] ctakes-gui ......................................... SUCCESS [  3.754 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.173 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  4.950 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.306 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.332 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  3.807 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.139 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  4.509 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  4.934 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 38.079 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  4.553 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.581 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  4.265 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  4.812 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  3.230 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  6.666 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  2.887 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  2.652 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  3.203 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [  3.071 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.015 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.995 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 38.441 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  5.964 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.365 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  6.575 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [  9.524 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:50 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [  9.146 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  2.522 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [  6.706 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.777 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [  6.137 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  2.486 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [  6.783 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.434 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [  3.074 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.427 s]
[INFO] ctakes-examples .................................... SUCCESS [  8.721 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [  2.503 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 16.528 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 10.198 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [  7.663 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:40 min
[INFO] Finished at: 2017-11-17T00:48:01Z
[INFO] Final Memory: 143M/1631M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
channel stopped

Build failed in Jenkins: cTAKES-trunk-Java-1.8 #31

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/31/display/redirect?page=changes>

Changes:

[alexz] CTAKES-480: fix pom.xml to remove exclusion for apache-profile

[alexz] CTAKES-479: add UmlsEnvironmentConfiguration.java

------------------------------------------
[...truncated 1.13 MB...]
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=12ms
[INFO] -------------  Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4370ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=24ms
[INFO] Sensor JavaSquidSensor (done) | time=4400ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=2ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=34ms
[INFO] -------------  Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] -------------  Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1442ms, dir size=18 MB
[INFO] Analysis reports compressed in 2827ms, zip size=7 MB
[INFO] Analysis report uploaded in 2162ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_HNOKTmqiS_xQKKaVP
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ...................................... SUCCESS [04:14 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [  4.150 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [  2.600 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [  7.354 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [  3.533 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.899 s]
[INFO] ctakes-gui ......................................... SUCCESS [  3.923 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [  3.347 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [  5.453 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [  3.269 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [  3.443 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [  3.934 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [  9.470 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [  4.853 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [  5.441 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 32.995 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [  4.760 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [  2.397 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [  4.548 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [  4.583 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [  3.648 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [  6.591 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [  3.031 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [  2.537 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [  3.240 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [  4.733 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [  4.077 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.424 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 40.464 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [  5.865 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [  2.387 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [  7.144 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.519 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:56 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [  8.854 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [  2.591 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [  7.277 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [  2.555 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [  6.280 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [  2.583 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [  6.201 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [  2.739 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [  3.081 s]
[INFO] ctakes-examples-res ................................ SUCCESS [  2.571 s]
[INFO] ctakes-examples .................................... SUCCESS [  8.372 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [  2.486 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 17.158 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 10.202 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [  7.442 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:40 min
[INFO] Finished at: 2017-11-16T23:41:31Z
[INFO] Final Memory: 153M/1671M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped