[jira] [Updated] (ANY23-49) N3/NQ parsers ignoring stopAtFirstError flag

["Hannes Mühleisen (Updated JIRA)" <ji...@apache.org>]

     [ https://issues.apache.org/jira/browse/ANY23-49?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Hannes Mühleisen updated ANY23-49:
----------------------------------

    Attachment: RobustNquadsParser.java

Adaptation of NQuadsParser
                
> N3/NQ parsers ignoring stopAtFirstError flag
> --------------------------------------------
>
>                 Key: ANY23-49
>                 URL: https://issues.apache.org/jira/browse/ANY23-49
>             Project: Apache Any23
>          Issue Type: Bug
>         Environment: Any23 0.6.1 and repository
>            Reporter: Hannes Mühleisen
>         Attachments: RobustNquadsParser.java
>
>
> The base interface for all RDF parsers (org.openrdf.rio.RDFParser) defines a method setStopAtFirstError. The documentation for this methods reads as "Sets whether the parser should stop immediately if it finds an error in the data". This is indeed very useful, as many data sets "out there" contain an amount of malformed entries.
> However, as far as I can tell from the current source code (0.6.1 and SVN trunk), both the NTriples parser (org.openrdf.rio.ntriples.NTriplesParser.NTriplesParser) and the NQuadsParser (org.deri.any23.parser.NQuadsParser) ignore this flag. In their respective implementations, they run through the entire files in an unchecked loop (see http://code.google.com/p/any23/source/browse/trunk/any23-core/src/main/java/org/deri/any23/io/nquads/NQuadsParser.java#100). 
> while(parseLine(fileReader)) {
>     nextRow();
> }
> Now, if the parsing of any line in a potential huge file throws an exception, the entire parsing process stops regardless of the setting of the "stopAtFirstError" flag. I propose these loops to be changed to honor this flag, so that when it is set to "false", the rest of the line is discarded and the parsing process can continue with the next line.
> I have implemented this behavior on the latest version of NQuadsParser from SVN (r1601), the source file is attached. I have changed the parseLine() method as follows:
> private boolean parseLine(BufferedReader br) throws IOException,
> 			RDFParseException, RDFHandlerException {
>     // [...]
>     try {
>         // [...]
>         // notifiyStatement moved into try block
>         notifyStatement(sub, pred, obj, graph);
>     } catch (EOS eos) {
>         reportFatalError("Unexpected end of line.", row, col);
>         throw new IllegalStateException();
>     } catch (IllegalArgumentException iae) {
>         if (!stopAtFirstError()) {
>             // remove remainder of broken line
>             consumeBrokenLine(br);
>             // notify parse error listener
>             reportError(iae.getMessage(), row, col);
>         } else {
>             throw new RDFParseException(iae);
>         }
>     }
>     // [...]
> }
> private void consumeBrokenLine(BufferedReader br) throws IOException {
>     char c;
>     while (true) {
>         mark(br);
>         c = readChar(br);
>         if (c == '\n') {
>             return;
>         }
>     }
> }
> It would be great if this or similar changes would find their way into the Any23 parsers.

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