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Posted to dev@taverna.apache.org by "Stian Soiland-Reyes (JIRA)" <ji...@apache.org> on 2018/02/08 13:58:00 UTC

[jira] [Updated] (TAVERNA-878) Tool: Execute CWL Tool descriptions

     [ https://issues.apache.org/jira/browse/TAVERNA-878?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Stian Soiland-Reyes updated TAVERNA-878:
----------------------------------------
    Labels: cwl gsoc2016 gsoc2018  (was: cwl gsoc2016)

> Tool: Execute CWL Tool descriptions
> -----------------------------------
>
>                 Key: TAVERNA-878
>                 URL: https://issues.apache.org/jira/browse/TAVERNA-878
>             Project: Apache Taverna
>          Issue Type: New Feature
>          Components: Taverna Common Activities
>            Reporter: Stian Soiland-Reyes
>            Priority: Minor
>              Labels: cwl, gsoc2016, gsoc2018
>
> Given TAVERNA-877, the Tool Activity can be made to run Common Workflow Language tools by generating the corresponding "docker run" command line with appropriate folder mappings from CWL's DockerRequirement description in YAML.
> CWL's ShellCommandRequirement could probably be ported directly
> http://common-workflow-language.github.io/draft-3/#ShellCommandRequirement
>  http://common-workflow-language.github.io/draft-3/#DockerRequirement



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