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Posted to user@ctakes.apache.org by Sangram Patil <sa...@figmd.com> on 2015/05/20 16:53:31 UTC
Value extraction of text-note of cancer-patient
Hi,
I am pretty new to cTakes. I have a requirement and would like to extract
values from text-note of patients suffering from cancer. The values such
PSA, Gleason TNM staging mentioned in the text-note need to be extracted.
Can anybody help me to use cTakes to solve my problem.
--
Sincerely,
Sangram Patil
RE: Value extraction of text-note of cancer-patient
Posted by Abhishek Srivastava <ab...@gmail.com>.
* .). A group of us is working on it though but it will be some time before we release code.
I would be curious to know as to what do you guys do to ensure that the library starts extracting attributes specific to any new or arbitrary domain (like cancer).
Perhaps it’s a naïve question…. But if we understood the steps involved, then we could add to the library.
Is there any place we can get started? How easy or hard it is?
From: Savova, Guergana [mailto:Guergana.Savova@childrens.harvard.edu]
Sent: Tuesday, May 26, 2015 8:10 AM
To: user@ctakes.apache.org
Subject: RE: Value extraction of text-note of cancer-patient
I think I replied to your email before.
Currently, cTAKES discovers Diseases/Disorder, Signs/Symptoms, Procedures, Anatomical sites and Medications. Semantic typing is based on the UMLS. No cancer specific attributes yet (PSA, TNM staging, etc.). A group of us is working on it though but it will be some time before we release code.
You can write your own annotator on top of cTAKES to discover PSA, TNM, etc.
Hope this helps.
--Guergana
From: Sangram Patil [mailto:sangramp@figmd.com]
Sent: Monday, May 25, 2015 1:12 AM
To: user@ctakes.apache.org <ma...@ctakes.apache.org>
Subject: Re: Value extraction of text-note of cancer-patient
Yes. Still if you know something and would like to point me somewhere, I would be very thankful.
On Sun, May 24, 2015 at 7:15 AM, John Green <hephaestus.studio@gmail.com <ma...@gmail.com> > wrote:
Have you read the documentation?
Jg
On Wed, May 20, 2015 at 8:55 AM, Sangram Patil <sangramp@figmd.com <ma...@figmd.com> > wrote:
Hi,
I am pretty new to cTakes. I have a requirement and would like to extract values from text-note of patients suffering from cancer. The values such PSA, Gleason TNM staging mentioned in the text-note need to be extracted.
<https://ssl.gstatic.com/ui/v1/icons/mail/images/cleardot.gif>
Can anybody help me to use cTakes to solve my problem.
--
Sincerely,
Sangram Patil
--
Sincerely,
Sangram Patil
RE: Value extraction of text-note of cancer-patient
Posted by "Savova, Guergana" <Gu...@childrens.harvard.edu>.
I think I replied to your email before.
Currently, cTAKES discovers Diseases/Disorder, Signs/Symptoms, Procedures, Anatomical sites and Medications. Semantic typing is based on the UMLS. No cancer specific attributes yet (PSA, TNM staging, etc.). A group of us is working on it though but it will be some time before we release code.
You can write your own annotator on top of cTAKES to discover PSA, TNM, etc.
Hope this helps.
--Guergana
From: Sangram Patil [mailto:sangramp@figmd.com]
Sent: Monday, May 25, 2015 1:12 AM
To: user@ctakes.apache.org
Subject: Re: Value extraction of text-note of cancer-patient
Yes. Still if you know something and would like to point me somewhere, I would be very thankful.
On Sun, May 24, 2015 at 7:15 AM, John Green <he...@gmail.com>> wrote:
Have you read the documentation?
Jg
On Wed, May 20, 2015 at 8:55 AM, Sangram Patil <sa...@figmd.com>> wrote:
Hi,
I am pretty new to cTakes. I have a requirement and would like to extract values from text-note of patients suffering from cancer. The values such PSA, Gleason TNM staging mentioned in the text-note need to be extracted.
[https://ssl.gstatic.com/ui/v1/icons/mail/images/cleardot.gif]
Can anybody help me to use cTakes to solve my problem.
--
Sincerely,
Sangram Patil
--
Sincerely,
Sangram Patil
Re: Value extraction of text-note of cancer-patient
Posted by Sangram Patil <sa...@figmd.com>.
Yes. Still if you know something and would like to point me somewhere, I
would be very thankful.
On Sun, May 24, 2015 at 7:15 AM, John Green <he...@gmail.com>
wrote:
> Have you read the documentation?
>
> Jg
>
>
> On Wed, May 20, 2015 at 8:55 AM, Sangram Patil <sa...@figmd.com> wrote:
>
>>
>>
>> Hi,
>>
>> I am pretty new to cTakes. I have a requirement and would like to extract
>> values from text-note of patients suffering from cancer. The values such
>> PSA, Gleason TNM staging mentioned in the text-note need to be extracted.
>> Can anybody help me to use cTakes to solve my problem.
>>
>> --
>> Sincerely,
>> Sangram Patil
>>
>>
>
--
Sincerely,
Sangram Patil
Re: Value extraction of text-note of cancer-patient
Posted by John Green <he...@gmail.com>.
Have you read the documentation?
Jg
On Wed, May 20, 2015 at 8:55 AM, Sangram Patil <sa...@figmd.com> wrote:
> Hi,
> I am pretty new to cTakes. I have a requirement and would like to extract
> values from text-note of patients suffering from cancer. The values such
> PSA, Gleason TNM staging mentioned in the text-note need to be extracted.
> Can anybody help me to use cTakes to solve my problem.
> --
> Sincerely,
> Sangram Patil