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Posted to issues@arrow.apache.org by "Thomas Buhrmann (JIRA)" <ji...@apache.org> on 2019/06/14 18:05:00 UTC
[jira] [Updated] (ARROW-5614) [R] Error: 'install_arrow' is not an
exported object from 'namespace:arrow'
[ https://issues.apache.org/jira/browse/ARROW-5614?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Thomas Buhrmann updated ARROW-5614:
-----------------------------------
Description:
I'm trying to get the R package installed in a Debian docker image that already contains R and RStudio (via rocker/rstudio from dockerhub), as well as arrow-cpp, parquet-cpp and pyarrow installed via conda. I.e. I should have all required arrow dependencies in my conda environment's /lib and /include folders.
I then tried to install the R package in two ways (as stated in the README, having devtools, and after managing to get git2r installed)
1/ via remotes
{code:java}
remotes::install_github("apache/arrow/r", ref="76e1bc5dfb9d08e31eddd5cbcc0b1bab934da2c7"){code}
2/ from source
{code:java}
git clone https://github.com/apache/arrow.git
cd arrow/r
R -e 'remotes::install_deps()'
R CMD INSTALL --configure-vars='INCLUDE_DIR=/root/miniconda/envs/my_env/include LIB_DIR=/root/miniconda/envs/my_env/lib' .{code}
In both cases the install seems to work fine:
{code:java}
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)
{code}
But when I then do the following as prompted:
{code:java}
library(arrow)
arrow::install_arrow()
{code}
The result is
{code:java}
Error: 'install_arrow' is not an exported object from 'namespace:arrow'
{code}
And running the example without calling that non-existing function I get the error
{code:java}
Error in Table__from_dots(dots, schema) :
Cannot call Table__from_dots(). Please use arrow::install_arrow() to install required runtime libraries.
{code}
So I don't know if I'm doing something wrong or if the documentation isn't up to date? Specifically, what is the arrow::install_arrow() function supposed to install, given that I already have the arrow and parquet libs and headers installed, and supposed they've been used (linked to) when I installed the R package?
In general, is there any way to get this package installed in the above context (arrow-cpp etc. installed via conda)?
was:
I'm trying to get the R package installed in a Debian docker image that already contains R and RStudio (via rocker/rstudio from dockerhub), as well as arrow-cpp, parquet-cpp and pyarrow installed via conda. I.e. I should have all required arrow dependencies in my conda environment's /lib and /include folders.
I then tried to install the R package in two ways (as stated in the README, having devtools, and after managing to get git2r installed)
1/ via remotes
{code:java}
remotes::install_github("apache/arrow/r", ref="76e1bc5dfb9d08e31eddd5cbcc0b1bab934da2c7"){code}
2/ from source
{code:java}
git clone https://github.com/apache/arrow.git
cd arrow/r
R -e 'remotes::install_deps()'
R CMD INSTALL --configure-vars='INCLUDE_DIR=/root/miniconda/envs/my_env/include LIB_DIR=/root/miniconda/envs/my_envs/lib' .{code}
In both cases the install seems to work fine:
{code:java}
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)
{code}
But when I then do the following as prompted:
{code}
library(arrow)
arrow::install_arrow()
{code}
The result is
{code}
Error: 'install_arrow' is not an exported object from 'namespace:arrow'
{code}
And running the example without calling that non-existing function I get the error
{code}
Error in Table__from_dots(dots, schema) :
Cannot call Table__from_dots(). Please use arrow::install_arrow() to install required runtime libraries.
{code}
So I don't know if I'm doing something wrong or if the documentation isn't up to date? Specifically, what is the arrow::install_arrow() function supposed to install, given that I already have the arrow and parquet libs and headers installed, and supposed they've been used (linked to) when I installed the R package?
In general, is there any way to get this package installed in the above context (arrow-cpp etc. installed via conda)?
> [R] Error: 'install_arrow' is not an exported object from 'namespace:arrow'
> ---------------------------------------------------------------------------
>
> Key: ARROW-5614
> URL: https://issues.apache.org/jira/browse/ARROW-5614
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Reporter: Thomas Buhrmann
> Priority: Major
>
> I'm trying to get the R package installed in a Debian docker image that already contains R and RStudio (via rocker/rstudio from dockerhub), as well as arrow-cpp, parquet-cpp and pyarrow installed via conda. I.e. I should have all required arrow dependencies in my conda environment's /lib and /include folders.
> I then tried to install the R package in two ways (as stated in the README, having devtools, and after managing to get git2r installed)
> 1/ via remotes
> {code:java}
> remotes::install_github("apache/arrow/r", ref="76e1bc5dfb9d08e31eddd5cbcc0b1bab934da2c7"){code}
> 2/ from source
> {code:java}
> git clone https://github.com/apache/arrow.git
> cd arrow/r
> R -e 'remotes::install_deps()'
> R CMD INSTALL --configure-vars='INCLUDE_DIR=/root/miniconda/envs/my_env/include LIB_DIR=/root/miniconda/envs/my_env/lib' .{code}
> In both cases the install seems to work fine:
> {code:java}
> ** building package indices
> ** testing if installed package can be loaded from temporary location
> ** checking absolute paths in shared objects and dynamic libraries
> ** testing if installed package can be loaded from final location
> ** testing if installed package keeps a record of temporary installation path
> * DONE (arrow)
> {code}
> But when I then do the following as prompted:
> {code:java}
> library(arrow)
> arrow::install_arrow()
> {code}
> The result is
> {code:java}
> Error: 'install_arrow' is not an exported object from 'namespace:arrow'
> {code}
> And running the example without calling that non-existing function I get the error
> {code:java}
> Error in Table__from_dots(dots, schema) :
> Cannot call Table__from_dots(). Please use arrow::install_arrow() to install required runtime libraries.
> {code}
> So I don't know if I'm doing something wrong or if the documentation isn't up to date? Specifically, what is the arrow::install_arrow() function supposed to install, given that I already have the arrow and parquet libs and headers installed, and supposed they've been used (linked to) when I installed the R package?
> In general, is there any way to get this package installed in the above context (arrow-cpp etc. installed via conda)?
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