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Posted to dev@ctakes.apache.org by Greg Silverman <gm...@umn.edu> on 2020/01/29 19:54:25 UTC
Looking for literature
I'm digging around for literature on the relationship between cTAKES and
MiPACQ, and of course found this paper, "The MiPACQ Clinical Question
Answering System," which describes how cTAKES was used wrt to the question
and answering component of MiPACQ.
However, I'm more interested in how cTAKES was used with the deidentified
MiPACQ corpus of pathology and colorectal cancer notes. All I'm able to
find is reference to the MiPACQ Treebank and with that, very little about
use of cTAKES. Any information about this, especially in the literature
would be most welcome.
Thanks in advance!
Greg--
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group>
Department of Surgery
University of Minnesota
gms@umn.edu
› evaluate-it.org ‹
Re: Looking for literature [EXTERNAL]
Posted by Greg Silverman <gm...@umn.edu>.
Perfect! 🍸
Thanks!
On Wed, Jan 29, 2020 at 2:09 PM Savova, Guergana <
Guergana.Savova@childrens.harvard.edu> wrote:
> Hi Greg,
>
> A link to our JAMIA publication describing the MiPACQ corpus and its usage:
> https://academic.oup.com/jamia/article/20/5/922/2909262
>
> I believe the "Development and evaluation of NLP components" section
> provides the details you are looking for.
>
> Best,
> --
> Guergana Savova, PhD, FACMI
> Associate Professor
> Boston Children's Hospital and Harvard Medical School
> Guergana.Savova@childrens.harvard.edu
> Harvard Scholar: http://scholar.harvard.edu/guergana_k_savova
>
>
> -----Original Message-----
> From: Greg Silverman [mailto:gms@umn.edu]
> Sent: Wednesday, January 29, 2020 2:54 PM
> To: dev@ctakes.apache.org
> Subject: Looking for literature [EXTERNAL]
>
> * External Email - Caution *
>
>
> I'm digging around for literature on the relationship between cTAKES and
> MiPACQ, and of course found this paper, "The MiPACQ Clinical Question
> Answering System," which describes how cTAKES was used wrt to the question
> and answering component of MiPACQ.
>
> However, I'm more interested in how cTAKES was used with the deidentified
> MiPACQ corpus of pathology and colorectal cancer notes. All I'm able to
> find is reference to the MiPACQ Treebank and with that, very little about
> use of cTAKES. Any information about this, especially in the literature
> would be most welcome.
>
> Thanks in advance!
>
> Greg--
>
> --
> Greg M. Silverman
> Senior Systems Developer
> NLP/IE <
> https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=SeLHlpmrGNnJ9mI2WCgf_wwQk9zL4aIrVmfBoSi-j0kfEcrO4yRGmRCJNAr-rCmP&m=63LaXAHZvn5yaZqIrQCc95Rhx7f28rT9VyzFEfyq0dE&s=-rtMCEmZOcmbxEqO4ewSJmiZwkUahVzGVSN9hdxOFJU&e=
> > Department of Surgery University of Minnesota gms@umn.edu
>
> › evaluate-it.org ‹
>
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group>
Department of Surgery
University of Minnesota
gms@umn.edu
› evaluate-it.org ‹
RE: Looking for literature [EXTERNAL]
Posted by "Savova, Guergana" <Gu...@childrens.harvard.edu>.
Hi Greg,
A link to our JAMIA publication describing the MiPACQ corpus and its usage:
https://academic.oup.com/jamia/article/20/5/922/2909262
I believe the "Development and evaluation of NLP components" section provides the details you are looking for.
Best,
--
Guergana Savova, PhD, FACMI
Associate Professor
Boston Children's Hospital and Harvard Medical School
Guergana.Savova@childrens.harvard.edu
Harvard Scholar: http://scholar.harvard.edu/guergana_k_savova
-----Original Message-----
From: Greg Silverman [mailto:gms@umn.edu]
Sent: Wednesday, January 29, 2020 2:54 PM
To: dev@ctakes.apache.org
Subject: Looking for literature [EXTERNAL]
* External Email - Caution *
I'm digging around for literature on the relationship between cTAKES and MiPACQ, and of course found this paper, "The MiPACQ Clinical Question Answering System," which describes how cTAKES was used wrt to the question and answering component of MiPACQ.
However, I'm more interested in how cTAKES was used with the deidentified MiPACQ corpus of pathology and colorectal cancer notes. All I'm able to find is reference to the MiPACQ Treebank and with that, very little about use of cTAKES. Any information about this, especially in the literature would be most welcome.
Thanks in advance!
Greg--
--
Greg M. Silverman
Senior Systems Developer
NLP/IE <https://urldefense.proofpoint.com/v2/url?u=https-3A__healthinformatics.umn.edu_research_nlpie-2Dgroup&d=DwIFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=SeLHlpmrGNnJ9mI2WCgf_wwQk9zL4aIrVmfBoSi-j0kfEcrO4yRGmRCJNAr-rCmP&m=63LaXAHZvn5yaZqIrQCc95Rhx7f28rT9VyzFEfyq0dE&s=-rtMCEmZOcmbxEqO4ewSJmiZwkUahVzGVSN9hdxOFJU&e= > Department of Surgery University of Minnesota gms@umn.edu
› evaluate-it.org ‹