svn commit: r1157050 [10/11] - in /uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons: ./ .settings/ META-INF/ icons/ schema/ src/ src/main/ src/main/java/ src/main/java/org/ src/main/java/org/apache/ src/main/java/org/apache/uima/ src/main/java/...

[jo...@apache.org]

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/FalsePositiveViewFactory.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/FalsePositiveViewFactory.java?rev=1157050&view=auto
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--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/FalsePositiveViewFactory.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/FalsePositiveViewFactory.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,43 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.fp;
+
+import org.apache.uima.cev.data.CEVDocument;
+import org.apache.uima.cev.editor.CEVViewer;
+import org.apache.uima.cev.extension.ICEVView;
+import org.apache.uima.cev.extension.ICEVViewFactory;
+
+
+public class FalsePositiveViewFactory implements ICEVViewFactory {
+
+  public FalsePositiveViewFactory() {
+  }
+
+  @Override
+  public ICEVView createView(CEVViewer viewer, CEVDocument cevDocument, int index) {
+    return new FalsePositiveViewPage(viewer, cevDocument, index);
+  }
+
+  @Override
+  public Class<?> getAdapterInterface() {
+    return IFalsePositiveViewPage.class;
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/FalsePositiveViewPage.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/FalsePositiveViewPage.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/FalsePositiveViewPage.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/FalsePositiveViewPage.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,189 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.fp;
+
+import java.util.List;
+import java.util.Map;
+
+import org.apache.uima.cas.Type;
+import org.apache.uima.cas.text.AnnotationFS;
+import org.apache.uima.cev.data.CEVData;
+import org.apache.uima.cev.data.CEVDocument;
+import org.apache.uima.cev.editor.CEVViewer;
+import org.apache.uima.cev.extension.ICEVView;
+import org.apache.uima.cev.views.CEVAnnotationTreeViewDragListener;
+import org.apache.uima.textmarker.testing.ui.views.tree.TestEvaluationTree;
+import org.eclipse.jface.viewers.CheckboxTreeViewer;
+import org.eclipse.jface.viewers.DoubleClickEvent;
+import org.eclipse.jface.viewers.IDoubleClickListener;
+import org.eclipse.jface.viewers.ISelection;
+import org.eclipse.jface.viewers.ISelectionChangedListener;
+import org.eclipse.jface.viewers.ITreeSelection;
+import org.eclipse.jface.viewers.SelectionChangedEvent;
+import org.eclipse.jface.viewers.TreeViewer;
+import org.eclipse.swt.SWT;
+import org.eclipse.swt.dnd.DND;
+import org.eclipse.swt.dnd.TextTransfer;
+import org.eclipse.swt.dnd.Transfer;
+import org.eclipse.swt.events.MouseEvent;
+import org.eclipse.swt.graphics.Image;
+import org.eclipse.swt.widgets.Composite;
+import org.eclipse.swt.widgets.Control;
+import org.eclipse.ui.part.IPageSite;
+import org.eclipse.ui.part.Page;
+
+
+public class FalsePositiveViewPage extends Page implements IFalsePositiveViewPage,
+        IDoubleClickListener, ICEVView, ISelectionChangedListener {
+
+  private CEVViewer casViewer;
+
+  private CEVDocument casDoc;
+
+  private CheckboxTreeViewer viewer;
+
+  int current = 0;
+
+  private Map<String, Image> images;
+
+  public FalsePositiveViewPage(CEVViewer casViewer, CEVDocument casDoc, int index) {
+    super();
+    this.casViewer = casViewer;
+    this.casDoc = casDoc;
+    this.current = index;
+  }
+
+  @Override
+  public Control getControl() {
+    return viewer.getControl();
+  }
+
+  @Override
+  public void setFocus() {
+    viewer.getControl().setFocus();
+  }
+
+  @Override
+  public void init(IPageSite pageSite) {
+    super.init(pageSite);
+  }
+
+  public TreeViewer getTreeViewer() {
+    return viewer;
+  }
+
+  public CEVData getCurrentCEVData() {
+    return casDoc.getCASData(current);
+  }
+
+  @Override
+  public void createControl(Composite parent) {
+    viewer = new CheckboxTreeViewer(parent, SWT.SINGLE | SWT.H_SCROLL | SWT.V_SCROLL);
+    viewer.setContentProvider(new FalsePositiveContentProvider());
+    viewer.setLabelProvider(new FalsePositiveLabelProvider(this));
+    viewer.addCheckStateListener(casDoc.getCASData(current));
+    viewer.addDoubleClickListener(this);
+    viewer.addSelectionChangedListener(this);
+    TestEvaluationTree tree = new TestEvaluationTree();
+    tree.createTree(getCurrentCEVData().getCAS());
+
+    int ops = DND.DROP_COPY | DND.DROP_MOVE;
+    Transfer[] transfers = new Transfer[] { TextTransfer.getInstance() };
+    viewer.addDragSupport(ops, transfers, new CEVAnnotationTreeViewDragListener(viewer));
+
+    viewer.setInput(tree);
+    viewer.refresh();
+  }
+
+  public void doubleClick(DoubleClickEvent event) {
+
+  }
+
+  @Override
+  public void dispose() {
+    super.dispose();
+    if (images != null) {
+      for (Image each : images.values()) {
+        each.dispose();
+      }
+    }
+  }
+
+  public void mouseDown(final MouseEvent event) {
+
+  }
+
+  public void mouseUp(final MouseEvent event) {
+
+  }
+
+  public void mouseDoubleClick(final MouseEvent event) {
+
+  }
+
+  public void viewChanged(int newIndex) {
+    getCurrentCEVData().removeAnnotationListener(this);
+    current = newIndex;
+    getCurrentCEVData().addAnnotationListener(this);
+
+    TestEvaluationTree tree = new TestEvaluationTree();
+    tree.createTree(getCurrentCEVData().getCAS());
+    viewer.setInput(tree.getRoot());
+    viewer.refresh();
+
+  }
+
+  public void annotationsAdded(List<AnnotationFS> annots) {
+
+  }
+
+  public void annotationsRemoved(List<AnnotationFS> annots) {
+
+  }
+
+  public void annotationStateChanged(Type type) {
+
+  }
+
+  public void annotationStateChanged(AnnotationFS annot) {
+
+  }
+
+  public void colorChanged(Type type) {
+
+  }
+
+  public void newSelection(int offset) {
+
+  }
+
+  public void selectionChanged(SelectionChangedEvent event) {
+    ISelection selection = event.getSelection();
+    if (selection instanceof ITreeSelection) {
+      ITreeSelection struct = (ITreeSelection) selection;
+      Object firstElement = struct.getFirstElement();
+
+    }
+  }
+
+  public void casChanged(CEVDocument casDocument) {
+    this.casDoc = casDocument;
+  }
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/IFalsePositiveViewPage.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/IFalsePositiveViewPage.java?rev=1157050&view=auto
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--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/IFalsePositiveViewPage.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/fp/IFalsePositiveViewPage.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,27 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.fp;
+
+import org.apache.uima.cev.views.ICEVViewPage;
+
+
+public interface IFalsePositiveViewPage extends ICEVViewPage {
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/ITruePositiveViewPage.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/ITruePositiveViewPage.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/ITruePositiveViewPage.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/ITruePositiveViewPage.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,27 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.tp;
+
+import org.apache.uima.cev.views.ICEVViewPage;
+
+
+public interface ITruePositiveViewPage extends ICEVViewPage {
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveContentProvider.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveContentProvider.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveContentProvider.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveContentProvider.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,97 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.uima.textmarker.testing.ui.views.tp;
+
+import org.apache.uima.cev.data.tree.CEVAnnotationTreeNode;
+import org.apache.uima.cev.data.tree.CEVTypeTreeNode;
+import org.apache.uima.cev.data.tree.ICEVTreeNode;
+import org.apache.uima.textmarker.testing.ui.views.tree.TestEvaluationTree;
+import org.eclipse.jface.viewers.ITreeContentProvider;
+import org.eclipse.jface.viewers.Viewer;
+
+public class TruePositiveContentProvider implements ITreeContentProvider {
+
+  private Object[] empty = new Object[] {};
+
+  @Override
+  public Object[] getChildren(Object parentElement) {
+    if (parentElement instanceof TestEvaluationTree) {
+      CEVTypeTreeNode root = (CEVTypeTreeNode) ((TestEvaluationTree) parentElement).getRoot();
+      if (root == null) {
+        return empty;
+      }
+      for (ICEVTreeNode node : root.getChildren()) {
+        if (node instanceof CEVTypeTreeNode) {
+          if (((CEVTypeTreeNode) node).getType().getName()
+                  .equals("org.apache.uima.textmarker.type.TruePositive")) {
+            return node.getChildren();
+          }
+        }
+      }
+    }
+    if (parentElement instanceof CEVTypeTreeNode) {
+
+      CEVTypeTreeNode node = (CEVTypeTreeNode) parentElement;
+      return node.getChildren();
+    }
+    if (parentElement instanceof CEVAnnotationTreeNode) {
+      CEVAnnotationTreeNode node = (CEVAnnotationTreeNode) parentElement;
+      return node.getChildren();
+    }
+    return empty;
+  }
+
+  @Override
+  public Object getParent(Object element) {
+    if (element instanceof ICEVTreeNode) {
+      return ((ICEVTreeNode) element).getParent();
+    }
+    return null;
+  }
+
+  @Override
+  public boolean hasChildren(Object element) {
+    if (element instanceof TestEvaluationTree) {
+      CEVTypeTreeNode root = (CEVTypeTreeNode) ((TestEvaluationTree) element).getRoot();
+      return root.hasChildren();
+
+    }
+    if (element instanceof ICEVTreeNode) {
+      return ((ICEVTreeNode) element).hasChildren();
+    }
+    return false;
+  }
+
+  @Override
+  public Object[] getElements(Object inputElement) {
+    return getChildren(inputElement);
+  }
+
+  @Override
+  public void dispose() {
+
+  }
+
+  @Override
+  public void inputChanged(Viewer viewer, Object oldInput, Object newInput) {
+
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveLabelProvider.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveLabelProvider.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveLabelProvider.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveLabelProvider.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,83 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.uima.textmarker.testing.ui.views.tp;
+
+import org.apache.uima.cev.data.tree.CEVAnnotationTreeNode;
+import org.apache.uima.cev.data.tree.CEVFeatureTreeNode;
+import org.apache.uima.cev.data.tree.CEVTypeTreeNode;
+import org.apache.uima.cev.views.TextUtils;
+import org.eclipse.jface.viewers.ILabelProvider;
+import org.eclipse.jface.viewers.LabelProvider;
+import org.eclipse.swt.graphics.Image;
+
+public class TruePositiveLabelProvider extends LabelProvider implements ILabelProvider {
+
+  private TruePositiveViewPage owner;
+
+  public TruePositiveLabelProvider() {
+    super();
+  }
+
+  public TruePositiveLabelProvider(TruePositiveViewPage owner) {
+    super();
+    this.owner = owner;
+  }
+
+  @Override
+  public String getText(Object element) {
+    if (element instanceof CEVAnnotationTreeNode) {
+      CEVAnnotationTreeNode fnNode = (CEVAnnotationTreeNode) element;
+      if (fnNode.getAnnotation() != null) {
+        String typeName = fnNode.getAnnotation().getType().getName();
+        String coveredText = fnNode.getAnnotation().getCoveredText();
+        coveredText = coveredText.replaceAll("[\\n]", "").replaceAll("[\\r]", "");
+        if (typeName.equals("org.apache.uima.textmarker.type.FalsePositive")
+                || typeName.equals("org.apache.uima.textmarker.type.FalseNegative")
+                || typeName.equals("org.apache.uima.textmarker.type.TruePositive")) {
+          return coveredText;
+        }
+        String name = TextUtils.shrinkNamespace(fnNode.getAnnotation().getType().getName());
+        return (name + ": " + coveredText);
+      }
+    }
+    if (element instanceof CEVTypeTreeNode) {
+      CEVTypeTreeNode testNode = (CEVTypeTreeNode) element;
+      return TextUtils.shrinkNamespace(testNode.getType().getName());
+    }
+    if (element instanceof CEVFeatureTreeNode) {
+      CEVFeatureTreeNode fNode = (CEVFeatureTreeNode) element;
+      return fNode.getName();
+    }
+
+    return "error";
+  }
+
+  @Override
+  public Image getImage(Object element) {
+    if (element instanceof CEVTypeTreeNode) {
+      return owner.getCurrentCEVData().getIcon(((CEVTypeTreeNode) element).getType());
+    }
+    if (element instanceof CEVAnnotationTreeNode) {
+      return owner.getCurrentCEVData().getIcon(
+              ((CEVAnnotationTreeNode) element).getAnnotation().getType());
+    }
+    return null;
+  }
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveView.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveView.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveView.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveView.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,36 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.tp;
+
+import org.apache.uima.cev.views.CEVPageBookView;
+import org.eclipse.ui.IWorkbenchPart;
+
+
+public class TruePositiveView extends CEVPageBookView {
+
+  public TruePositiveView() {
+    super();
+  }
+
+  @Override
+  protected PageRec doCreatePage(IWorkbenchPart part) {
+    return doCreatePage(part, ITruePositiveViewPage.class);
+  }
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveViewFactory.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveViewFactory.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveViewFactory.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveViewFactory.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,43 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.tp;
+
+import org.apache.uima.cev.data.CEVDocument;
+import org.apache.uima.cev.editor.CEVViewer;
+import org.apache.uima.cev.extension.ICEVView;
+import org.apache.uima.cev.extension.ICEVViewFactory;
+
+
+public class TruePositiveViewFactory implements ICEVViewFactory {
+
+  public TruePositiveViewFactory() {
+  }
+
+  @Override
+  public ICEVView createView(CEVViewer viewer, CEVDocument cevDocument, int index) {
+    return new TruePositiveViewPage(viewer, cevDocument, index);
+  }
+
+  @Override
+  public Class<?> getAdapterInterface() {
+    return ITruePositiveViewPage.class;
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveViewPage.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveViewPage.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveViewPage.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tp/TruePositiveViewPage.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,189 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.tp;
+
+import java.util.List;
+import java.util.Map;
+
+import org.apache.uima.cas.Type;
+import org.apache.uima.cas.text.AnnotationFS;
+import org.apache.uima.cev.data.CEVData;
+import org.apache.uima.cev.data.CEVDocument;
+import org.apache.uima.cev.editor.CEVViewer;
+import org.apache.uima.cev.extension.ICEVView;
+import org.apache.uima.cev.views.CEVAnnotationTreeViewDragListener;
+import org.apache.uima.textmarker.testing.ui.views.tree.TestEvaluationTree;
+import org.eclipse.jface.viewers.CheckboxTreeViewer;
+import org.eclipse.jface.viewers.DoubleClickEvent;
+import org.eclipse.jface.viewers.IDoubleClickListener;
+import org.eclipse.jface.viewers.ISelection;
+import org.eclipse.jface.viewers.ISelectionChangedListener;
+import org.eclipse.jface.viewers.ITreeSelection;
+import org.eclipse.jface.viewers.SelectionChangedEvent;
+import org.eclipse.jface.viewers.TreeViewer;
+import org.eclipse.swt.SWT;
+import org.eclipse.swt.dnd.DND;
+import org.eclipse.swt.dnd.TextTransfer;
+import org.eclipse.swt.dnd.Transfer;
+import org.eclipse.swt.events.MouseEvent;
+import org.eclipse.swt.graphics.Image;
+import org.eclipse.swt.widgets.Composite;
+import org.eclipse.swt.widgets.Control;
+import org.eclipse.ui.part.IPageSite;
+import org.eclipse.ui.part.Page;
+
+
+public class TruePositiveViewPage extends Page implements ITruePositiveViewPage,
+        IDoubleClickListener, ICEVView, ISelectionChangedListener {
+
+  private CEVViewer casViewer;
+
+  private CEVDocument casDoc;
+
+  private CheckboxTreeViewer viewer;
+
+  int current = 0;
+
+  private Map<String, Image> images;
+
+  public TruePositiveViewPage(CEVViewer casViewer, CEVDocument casDoc, int index) {
+    super();
+    this.casViewer = casViewer;
+    this.casDoc = casDoc;
+    this.current = index;
+  }
+
+  @Override
+  public Control getControl() {
+    return viewer.getControl();
+  }
+
+  @Override
+  public void setFocus() {
+    viewer.getControl().setFocus();
+  }
+
+  @Override
+  public void init(IPageSite pageSite) {
+    super.init(pageSite);
+  }
+
+  public TreeViewer getTreeViewer() {
+    return viewer;
+  }
+
+  public CEVData getCurrentCEVData() {
+    return casDoc.getCASData(current);
+  }
+
+  @Override
+  public void createControl(Composite parent) {
+    viewer = new CheckboxTreeViewer(parent, SWT.SINGLE | SWT.H_SCROLL | SWT.V_SCROLL);
+    viewer.setContentProvider(new TruePositiveContentProvider());
+    viewer.setLabelProvider(new TruePositiveLabelProvider(this));
+    viewer.addCheckStateListener(casDoc.getCASData(current));
+    viewer.addDoubleClickListener(this);
+    viewer.addSelectionChangedListener(this);
+    TestEvaluationTree tree = new TestEvaluationTree();
+    tree.createTree(getCurrentCEVData().getCAS());
+
+    int ops = DND.DROP_COPY | DND.DROP_MOVE;
+    Transfer[] transfers = new Transfer[] { TextTransfer.getInstance() };
+    viewer.addDragSupport(ops, transfers, new CEVAnnotationTreeViewDragListener(viewer));
+
+    viewer.setInput(tree);
+    viewer.refresh();
+  }
+
+  public void doubleClick(DoubleClickEvent event) {
+
+  }
+
+  @Override
+  public void dispose() {
+    super.dispose();
+    if (images != null) {
+      for (Image each : images.values()) {
+        each.dispose();
+      }
+    }
+  }
+
+  public void mouseDown(final MouseEvent event) {
+
+  }
+
+  public void mouseUp(final MouseEvent event) {
+
+  }
+
+  public void mouseDoubleClick(final MouseEvent event) {
+
+  }
+
+  public void viewChanged(int newIndex) {
+    getCurrentCEVData().removeAnnotationListener(this);
+    current = newIndex;
+    getCurrentCEVData().addAnnotationListener(this);
+
+    TestEvaluationTree tree = new TestEvaluationTree();
+    tree.createTree(getCurrentCEVData().getCAS());
+    viewer.setInput(tree.getRoot());
+    viewer.refresh();
+
+  }
+
+  public void annotationsAdded(List<AnnotationFS> annots) {
+
+  }
+
+  public void annotationsRemoved(List<AnnotationFS> annots) {
+
+  }
+
+  public void annotationStateChanged(Type type) {
+
+  }
+
+  public void annotationStateChanged(AnnotationFS annot) {
+
+  }
+
+  public void colorChanged(Type type) {
+
+  }
+
+  public void newSelection(int offset) {
+
+  }
+
+  public void selectionChanged(SelectionChangedEvent event) {
+    ISelection selection = event.getSelection();
+    if (selection instanceof ITreeSelection) {
+      ITreeSelection struct = (ITreeSelection) selection;
+      Object firstElement = struct.getFirstElement();
+
+    }
+  }
+
+  public void casChanged(CEVDocument casDocument) {
+    this.casDoc = casDocument;
+  }
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tree/TestEvaluationTree.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tree/TestEvaluationTree.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tree/TestEvaluationTree.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/tree/TestEvaluationTree.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,109 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.tree;
+
+import org.apache.uima.cas.CAS;
+import org.apache.uima.cas.FSIterator;
+import org.apache.uima.cas.Feature;
+import org.apache.uima.cas.FeatureStructure;
+import org.apache.uima.cas.Type;
+import org.apache.uima.cas.text.AnnotationFS;
+import org.apache.uima.cev.data.tree.CEVAnnotationTreeNode;
+import org.apache.uima.cev.data.tree.CEVTypeTreeNode;
+import org.apache.uima.cev.data.tree.ICEVTreeNode;
+import org.apache.uima.textmarker.testing.evaluator.ICasEvaluator;
+
+
+public class TestEvaluationTree {
+
+  private CEVTypeTreeNode root;
+
+  public TestEvaluationTree() {
+
+  }
+
+  public void createTree(CAS cas) {
+    Type falsePositiveType = cas.getTypeSystem().getType(ICasEvaluator.FALSE_POSITIVE);
+    Type falseNegativeType = cas.getTypeSystem().getType(ICasEvaluator.FALSE_NEGATIVE);
+    Type truePositiveType = cas.getTypeSystem().getType(ICasEvaluator.TRUE_POSITIVE);
+
+    if (falsePositiveType == null || falseNegativeType == null) {
+      return;
+    }
+    // Creating RootNode and children that function as root nodes
+    // for the FalsePositive /FalseNegative subtrees
+    root = new CEVTypeTreeNode(null, cas.getAnnotationType());
+    boolean containsEvalInfos = false;
+
+    CEVTypeTreeNode fproot = new CEVTypeTreeNode(root, falsePositiveType);
+    CEVTypeTreeNode fnroot = new CEVTypeTreeNode(root, falseNegativeType);
+    CEVTypeTreeNode tproot = new CEVTypeTreeNode(root, truePositiveType);
+
+    // Iterating through CAS and adding nodes to according subtrees
+
+    addEvalNodes(cas, falsePositiveType, fproot);
+    addEvalNodes(cas, falseNegativeType, fnroot);
+    addEvalNodes(cas, truePositiveType, tproot);
+
+    // if (containsEvalInfos) {
+    root.addChild(fproot);
+    root.addChild(fnroot);
+    root.addChild(tproot);
+    // }
+  }
+
+  private void addEvalNodes(CAS cas, Type falsePositiveType, CEVTypeTreeNode fproot) {
+    FSIterator<AnnotationFS> iter = cas.getAnnotationIndex(falsePositiveType).iterator();
+    while (iter.isValid()) {
+      FeatureStructure fs = iter.get();
+      if (fs instanceof AnnotationFS) {
+        AnnotationFS a = (AnnotationFS) fs;
+        Feature original = fs.getType().getFeatureByBaseName(ICasEvaluator.ORIGINAL);
+        FeatureStructure originalfs = fs.getFeatureValue(original);
+        CEVTypeTreeNode parentTypeNode = containsTypeNode(fproot, originalfs);
+        if (parentTypeNode == null && originalfs != null) {
+          parentTypeNode = new CEVTypeTreeNode(fproot, originalfs.getType());
+          fproot.addChild(parentTypeNode);
+        }
+        CEVAnnotationTreeNode newNode = new CEVAnnotationTreeNode(parentTypeNode, a);
+        parentTypeNode.addChild(newNode);
+      }
+      iter.moveToNext();
+    }
+  }
+
+  private CEVTypeTreeNode containsTypeNode(CEVTypeTreeNode fproot, FeatureStructure originalfs) {
+    ICEVTreeNode[] children = fproot.getChildren();
+    for (ICEVTreeNode each : children) {
+      if (each instanceof CEVTypeTreeNode) {
+        CEVTypeTreeNode node = (CEVTypeTreeNode) each;
+        if (node.getType().equals(originalfs.getType())) {
+          return node;
+        }
+      }
+    }
+    return null;
+  }
+
+  public ICEVTreeNode getRoot() {
+    return this.root;
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/CASLoader.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/CASLoader.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/CASLoader.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/CASLoader.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,90 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.uima.textmarker.testing.ui.views.util;
+
+import java.io.File;
+import java.io.FileInputStream;
+
+import org.apache.uima.UIMAFramework;
+import org.apache.uima.analysis_engine.AnalysisEngine;
+import org.apache.uima.analysis_engine.AnalysisEngineDescription;
+import org.apache.uima.cas.CAS;
+import org.apache.uima.cas.impl.XmiCasDeserializer;
+import org.apache.uima.resource.ResourceSpecifier;
+import org.apache.uima.resource.metadata.FsIndexDescription;
+import org.apache.uima.resource.metadata.TypeSystemDescription;
+import org.apache.uima.textmarker.ide.TextMarkerIdePlugin;
+import org.apache.uima.textmarker.ide.core.builder.TextMarkerProjectUtils;
+import org.apache.uima.util.CasCreationUtils;
+import org.apache.uima.util.XMLInputSource;
+import org.eclipse.core.resources.IResource;
+import org.eclipse.core.runtime.IPath;
+
+public class CASLoader {
+
+  public static CAS loadCas(IResource r, IPath file) {
+    String elementName = r.getLocation().lastSegment();
+    // Remove Fileend if elementName exists
+    int lastIndexOf = elementName.lastIndexOf(".tm");
+    if (lastIndexOf != -1) {
+      elementName = elementName.substring(0, lastIndexOf);
+    }
+
+    IPath engineDescriptorPath = TextMarkerProjectUtils.getEngineDescriptorPath(r.getLocation(),
+            r.getProject());
+    try {
+      XMLInputSource in = new XMLInputSource(engineDescriptorPath.toPortableString());
+      ResourceSpecifier specifier = UIMAFramework.getXMLParser().parseResourceSpecifier(in);
+      AnalysisEngine ae = UIMAFramework.produceAnalysisEngine(specifier);
+
+      String desc = null;
+      desc = engineDescriptorPath.toPortableString();
+      XMLInputSource in2 = new XMLInputSource(desc);
+      Object descriptor = UIMAFramework.getXMLParser().parse(in2);
+      CAS testCas = null;
+      if (descriptor instanceof AnalysisEngineDescription) {
+        testCas = CasCreationUtils.createCas((AnalysisEngineDescription) descriptor);
+      } else if (descriptor instanceof TypeSystemDescription) {
+        TypeSystemDescription tsDesc = (TypeSystemDescription) descriptor;
+        tsDesc.resolveImports();
+        testCas = CasCreationUtils.createCas(tsDesc, null, new FsIndexDescription[0]);
+        // TODO: where are the type priorities?
+      }
+
+      FileInputStream inputStream = null;
+      try {
+        inputStream = new FileInputStream(
+        // resource.getLocation().toFile()
+                new File(file.toPortableString()));
+
+        XmiCasDeserializer.deserialize(inputStream, testCas, true);
+
+      } finally {
+        if (inputStream != null) {
+          inputStream.close();
+        }
+      }
+      return testCas;
+    } catch (Exception e) {
+      TextMarkerIdePlugin.error(e);
+    }
+    return null;
+  }
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/Caretaker.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/Caretaker.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/Caretaker.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/Caretaker.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,125 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.util;
+
+import java.util.ArrayList;
+import java.util.Iterator;
+import java.util.LinkedList;
+
+import org.apache.uima.textmarker.testing.ui.views.TestCasData;
+import org.eclipse.jface.viewers.TableViewer;
+
+
+public class Caretaker {
+
+  private class SaveStateAdapter implements Runnable {
+
+    private TableViewer viewer;
+
+    private ArrayList list;
+
+    public SaveStateAdapter(TableViewer viewer, ArrayList list) {
+      this.viewer = viewer;
+      this.list = list;
+    }
+
+    @Override
+    public void run() {
+      viewer.setInput(list);
+
+    }
+
+  }
+
+  LinkedList<ArrayList<TestCasData>> memento;
+
+  int index;
+
+  public Caretaker() {
+    memento = new LinkedList();
+    memento.add(new ArrayList<TestCasData>());
+    index = 0;
+
+  }
+
+  public Caretaker(ArrayList<TestCasData> firstElement) {
+    memento = new LinkedList();
+    memento.add(firstElement);
+    index = 0;
+  }
+
+  public void saveState(TableViewer viewer) {
+    ArrayList state = (ArrayList) viewer.getInput();
+
+    index++;
+
+    ArrayList<TestCasData> newState = new ArrayList<TestCasData>();
+
+    Iterator<TestCasData> iter = state.iterator();
+
+    if (index < memento.size()) {
+      for (int i = index; i < memento.size(); i++) {
+        memento.remove(i);
+      }
+    }
+
+    while (iter.hasNext()) {
+      newState.add(iter.next());
+    }
+    memento.add(index, state);
+
+    viewer.getControl().getDisplay().asyncExec(new SaveStateAdapter(viewer, newState));
+  }
+
+  public Object getMemento(int newIndex) {
+    if (index <= 0) {
+      index = 0;
+      return memento.get(0);
+    }
+
+    if (memento.size() > index) {
+      return memento.get(index);
+    }
+
+    if (memento.size() <= index) {
+      index = memento.size() - 1;
+      return memento.get(memento.size() - 1);
+    }
+
+    index = memento.size();
+    return memento.get(index);
+  }
+
+  public Object getPreviousState() {
+    index--;
+    if (index < 0) {
+      index = 0;
+    }
+    return getMemento(index);
+  }
+
+  public Object getNextState() {
+    index++;
+    if (index > memento.size() - 1) {
+      index = memento.size() - 1;
+    }
+    return getMemento(index);
+  }
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/EvalDataProcessor.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/EvalDataProcessor.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/EvalDataProcessor.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/EvalDataProcessor.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,132 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.util;
+
+import java.util.Collection;
+import java.util.HashMap;
+
+import org.apache.uima.cas.CAS;
+import org.apache.uima.cas.FSIterator;
+import org.apache.uima.cas.Feature;
+import org.apache.uima.cas.FeatureStructure;
+import org.apache.uima.cas.Type;
+import org.apache.uima.cas.TypeSystem;
+import org.apache.uima.cas.text.AnnotationFS;
+import org.apache.uima.cas.text.AnnotationIndex;
+import org.apache.uima.textmarker.testing.evaluator.ICasEvaluator;
+import org.apache.uima.textmarker.testing.ui.views.TestCasData;
+import org.apache.uima.textmarker.testing.ui.views.evalDataTable.TypeEvalData;
+
+
+public class EvalDataProcessor {
+
+  public static void calculateEvaluatData(TestCasData data, CAS resultCas) {
+    data.setEvaluationStatus(true);
+    TypeSystem ts = resultCas.getTypeSystem();
+    Type falsePositiveType = ts.getType(ICasEvaluator.FALSE_POSITIVE);
+    Type falseNegativeType = ts.getType(ICasEvaluator.FALSE_NEGATIVE);
+    Type truePositiveType = ts.getType(ICasEvaluator.TRUE_POSITIVE);
+
+    Feature originalFeature = truePositiveType.getFeatureByBaseName("original");
+
+    int falsePositiveCount = resultCas.getAnnotationIndex(falsePositiveType).size();
+    int falseNegativeCount = resultCas.getAnnotationIndex(falseNegativeType).size();
+    int truePositiveCount = resultCas.getAnnotationIndex(truePositiveType).size();
+
+    data.setTruePositiveCount(truePositiveCount);
+    data.setFalsePositiveCount(falsePositiveCount);
+    data.setFalseNegativeCount(falseNegativeCount);
+
+    HashMap<String, TypeEvalData> map = new HashMap<String, TypeEvalData>();
+
+    map.put(" Total", new TypeEvalData("Total", truePositiveCount, falsePositiveCount,
+            falseNegativeCount));
+
+    AnnotationIndex<AnnotationFS> index = resultCas.getAnnotationIndex(truePositiveType);
+
+    FSIterator iter = index.iterator();
+
+    if (originalFeature != null) {
+
+      while (iter.isValid()) {
+        AnnotationFS a = (AnnotationFS) iter.next();
+
+        FeatureStructure fs = a.getFeatureValue(originalFeature);
+        String typeName = fs.getType().getName();
+
+        if (map.containsKey(typeName)) {
+          TypeEvalData element = (TypeEvalData) map.get(typeName);
+          int oldCount = element.getTruePositives();
+          element.setTruePositives(oldCount + 1);
+        } else {
+          TypeEvalData newData = new TypeEvalData(typeName, 1, 0, 0);
+          map.put(typeName, newData);
+        }
+      }
+
+      index = resultCas.getAnnotationIndex(falsePositiveType);
+      iter = index.iterator();
+
+      while (iter.isValid()) {
+        AnnotationFS a = (AnnotationFS) iter.next();
+
+        FeatureStructure fs = a.getFeatureValue(originalFeature);
+        String typeName = fs.getType().getName();
+
+        if (map.containsKey(typeName)) {
+          TypeEvalData element = (TypeEvalData) map.get(typeName);
+          int oldCount = element.getFalsePositives();
+          element.setFalsePositives(oldCount + 1);
+        } else {
+          TypeEvalData newData = new TypeEvalData(typeName, 0, 1, 0);
+          map.put(typeName, newData);
+        }
+      }
+
+      index = resultCas.getAnnotationIndex(falseNegativeType);
+      iter = index.iterator();
+
+      while (iter.isValid()) {
+        AnnotationFS a = (AnnotationFS) iter.next();
+
+        FeatureStructure fs = a.getFeatureValue(originalFeature);
+        String typeName = fs.getType().getName();
+
+        if (map.containsKey(typeName)) {
+          TypeEvalData element = (TypeEvalData) map.get(typeName);
+          int oldCount = element.getFalseNegatives();
+          element.setFalseNegatives(oldCount + 1);
+        } else {
+          TypeEvalData newData = new TypeEvalData(typeName, 0, 0, 1);
+          map.put(typeName, newData);
+        }
+      }
+
+      data.setTypeEvalData(map);
+
+      Collection<TypeEvalData> col = map.values();
+      for (TypeEvalData typeEvalData : col) {
+        typeEvalData.calcFOne();
+      }
+
+      return;
+    }
+  }
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/Memento.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/Memento.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/Memento.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/testing/ui/views/util/Memento.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,40 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.testing.ui.views.util;
+
+import java.util.ArrayList;
+
+import org.apache.uima.textmarker.testing.ui.views.TestCasData;
+
+
+public class Memento {
+
+  private ArrayList<TestCasData> testFileList;
+ 
+  public Memento (ArrayList<TestCasData> testData) {
+    this.testFileList = testData;
+  }
+  
+  public ArrayList<TestCasData> getTestFileList () {
+    return this.testFileList;
+  }
+  
+  
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/AbstarctApplyScriptHandler.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/AbstarctApplyScriptHandler.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/AbstarctApplyScriptHandler.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/AbstarctApplyScriptHandler.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,69 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.uima.textmarker.utils.apply;
+
+import org.apache.uima.textmarker.addons.TextMarkerAddonsPlugin;
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.commands.ExecutionException;
+import org.eclipse.core.commands.IHandler;
+import org.eclipse.core.commands.IHandlerListener;
+import org.eclipse.core.resources.IFile;
+import org.eclipse.ui.IEditorInput;
+import org.eclipse.ui.IEditorPart;
+import org.eclipse.ui.IWorkbench;
+import org.eclipse.ui.IWorkbenchPage;
+import org.eclipse.ui.part.FileEditorInput;
+
+public abstract class AbstarctApplyScriptHandler implements IHandler {
+
+  public void addHandlerListener(IHandlerListener handlerListener) {
+  }
+
+  public void dispose() {
+  }
+
+  @Override
+  public Object execute(ExecutionEvent event) throws ExecutionException {
+    IWorkbench workbench = TextMarkerAddonsPlugin.getDefault().getWorkbench();
+    IWorkbenchPage page = workbench.getActiveWorkbenchWindow().getActivePage();
+    IEditorPart part = page.getActiveEditor();
+    IEditorInput editorInput = part.getEditorInput();
+    if (editorInput instanceof FileEditorInput) {
+      FileEditorInput input = (FileEditorInput) editorInput;
+      IFile path = input.getFile();
+      getJob(event, path).schedule();
+    }
+    return null;
+  }
+
+  abstract AbstractApplyScriptHandlerJob getJob(ExecutionEvent event, IFile path);
+
+  public boolean isEnabled() {
+    return true;
+  }
+
+  public boolean isHandled() {
+    return true;
+  }
+
+  public void removeHandlerListener(IHandlerListener handlerListener) {
+
+  }
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/AbstractApplyScriptHandlerJob.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/AbstractApplyScriptHandlerJob.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/AbstractApplyScriptHandlerJob.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/AbstractApplyScriptHandlerJob.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,235 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.uima.textmarker.utils.apply;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileOutputStream;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.Iterator;
+import java.util.List;
+
+import org.apache.uima.UIMAFramework;
+import org.apache.uima.analysis_engine.AnalysisEngine;
+import org.apache.uima.cas.CAS;
+import org.apache.uima.cas.impl.XmiCasDeserializer;
+import org.apache.uima.cas.impl.XmiCasSerializer;
+import org.apache.uima.resource.ResourceManager;
+import org.apache.uima.resource.ResourceSpecifier;
+import org.apache.uima.textmarker.engine.TextMarkerEngine;
+import org.apache.uima.textmarker.ide.TextMarkerIdePlugin;
+import org.apache.uima.textmarker.ide.core.builder.TextMarkerProjectUtils;
+import org.apache.uima.util.XMLInputSource;
+import org.apache.uima.util.XMLSerializer;
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.resources.IFile;
+import org.eclipse.core.resources.IFolder;
+import org.eclipse.core.resources.IResource;
+import org.eclipse.core.resources.IWorkspace;
+import org.eclipse.core.resources.IWorkspaceRoot;
+import org.eclipse.core.resources.ResourcesPlugin;
+import org.eclipse.core.runtime.CoreException;
+import org.eclipse.core.runtime.IPath;
+import org.eclipse.core.runtime.IProgressMonitor;
+import org.eclipse.core.runtime.IStatus;
+import org.eclipse.core.runtime.NullProgressMonitor;
+import org.eclipse.core.runtime.Status;
+import org.eclipse.core.runtime.jobs.Job;
+import org.eclipse.dltk.core.DLTKCore;
+import org.eclipse.jface.viewers.IStructuredSelection;
+import org.eclipse.jface.viewers.StructuredSelection;
+import org.eclipse.ui.handlers.HandlerUtil;
+import org.xml.sax.SAXException;
+
+public abstract class AbstractApplyScriptHandlerJob extends Job {
+  private ExecutionEvent event;
+
+  private IFile scriptFile;
+
+  private boolean createXMI;
+
+  AbstractApplyScriptHandlerJob(ExecutionEvent event, IFile scriptFile, boolean createXMI) {
+    super("Applying " + scriptFile.getName() + "...");
+    this.event = event;
+    this.scriptFile = scriptFile;
+    this.createXMI = createXMI;
+    setUser(true);
+  }
+
+  @Override
+  public IStatus run(IProgressMonitor monitor) {
+    monitor.beginTask("Collecting files...", 1);
+
+    if (HandlerUtil.getCurrentSelection(event) instanceof IStructuredSelection) {
+      StructuredSelection selection = (StructuredSelection) HandlerUtil.getCurrentSelection(event);
+      Iterator<?> iter = selection.iterator();
+      IResource first = null;
+
+      List<IPath> paths = new ArrayList<IPath>();
+      while (iter.hasNext()) {
+        Object object = iter.next();
+        if (object instanceof IResource) {
+          IResource resource = (IResource) object;
+          if (first == null) {
+            first = resource;
+          }
+          paths.addAll(getPaths(resource));
+        }
+      }
+      IPath descriptorPath = TextMarkerProjectUtils.getEngineDescriptorPath(
+              scriptFile.getLocation(), scriptFile.getProject());
+      IPath rootPath = TextMarkerProjectUtils.getDescriptorRootPath(scriptFile.getProject());
+
+      CAS cas = null;
+      AnalysisEngine ae = null;
+      try {
+        XMLInputSource in = new XMLInputSource(descriptorPath.toPortableString());
+        ResourceSpecifier specifier = UIMAFramework.getXMLParser().parseResourceSpecifier(in);
+        ResourceManager resMgr = UIMAFramework.newDefaultResourceManager();
+        resMgr.setDataPath(rootPath.toPortableString());
+        ae = UIMAFramework.produceAnalysisEngine(specifier, resMgr, null);
+        initAE(ae);
+        ae.reconfigure();
+      } catch (Exception e) {
+        DLTKCore.error(e.getMessage(), e);
+        return Status.CANCEL_STATUS;
+      }
+      monitor.beginTask("Processing... ", paths.size());
+      for (IPath path : paths) {
+        if (monitor.isCanceled()) {
+          break;
+        }
+
+        monitor.setTaskName("Processing " + path.lastSegment() + "... ");
+        try {
+
+          if (cas == null) {
+            cas = ae.newCAS();
+          } else {
+            cas.reset();
+          }
+          if (path.getFileExtension().equals("xmi")) {
+            XmiCasDeserializer.deserialize(new FileInputStream(path.toPortableString()), cas, true);
+          } else {
+            cas.setDocumentText(getText(path.toPortableString()));
+          }
+          TextMarkerEngine.removeSourceDocumentInformation(cas);
+          TextMarkerEngine.addSourceDocumentInformation(cas, new File(path.toPortableString()));
+          ae.process(cas);
+        } catch (Exception e) {
+          DLTKCore.error(e.getMessage(), e);
+          monitor.worked(1);
+          continue;
+        }
+
+        if (createXMI) {
+          monitor.setTaskName("Writing " + path.lastSegment() + "... ");
+
+          File newFile = null;
+          if (path.getFileExtension().equals("xmi")) {
+            newFile = new File(path.toPortableString());
+          } else {
+            newFile = new File(path.toPortableString() + ".xmi");
+          }
+          try {
+            writeXmi(cas, newFile);
+          } catch (Exception e) {
+            DLTKCore.error(e.getMessage(), e);
+            monitor.worked(1);
+            continue;
+          }
+          IWorkspace workspace = ResourcesPlugin.getWorkspace();
+          IWorkspaceRoot root = workspace.getRoot();
+          IPath makeRelativeTo = path.makeRelativeTo(root.getLocation());
+          IResource resource = root.findMember(makeRelativeTo);
+
+          try {
+            if (resource != null) {
+              resource.getParent()
+                      .refreshLocal(IResource.DEPTH_INFINITE, new NullProgressMonitor());
+            }
+          } catch (CoreException e) {
+          }
+        }
+        monitor.worked(1);
+      }
+      if (cas != null) {
+        cas.release();
+      }
+    }
+
+    monitor.done();
+    return Status.OK_STATUS;
+
+  }
+
+  private static void writeXmi(CAS aCas, File name) throws IOException, SAXException {
+    FileOutputStream out = null;
+
+    try {
+      // write XMI
+      out = new FileOutputStream(name);
+      XmiCasSerializer ser = new XmiCasSerializer(aCas.getTypeSystem());
+      XMLSerializer xmlSer = new XMLSerializer(out, false);
+      ser.serialize(aCas, xmlSer.getContentHandler());
+    } catch (Exception e) {
+      TextMarkerIdePlugin.error(e);
+    } finally {
+      if (out != null) {
+        out.close();
+      }
+    }
+  }
+
+  private List<IPath> getPaths(IResource resource) {
+    List<IPath> paths = new ArrayList<IPath>();
+    if (resource instanceof IFile) {
+      IFile file = (IFile) resource;
+      String fileExtension = file.getFileExtension();
+      if ("txt".equals(fileExtension) || "html".equals(fileExtension)
+              || "xmi".equals(fileExtension) || "htm".equals(fileExtension)) {
+        paths.add(file.getLocation());
+      }
+    } else if (resource instanceof IFolder) {
+      IFolder folder = (IFolder) resource;
+      try {
+        IResource[] members = folder.members();
+        for (IResource each : members) {
+          paths.addAll(getPaths(each));
+        }
+      } catch (CoreException e) {
+      }
+    }
+    return paths;
+  }
+
+  abstract void initAE(AnalysisEngine ae);
+
+  private static String getText(String each) {
+    try {
+      return org.apache.uima.pear.util.FileUtil.loadTextFile(new File(each), "UTF-8");
+    } catch (IOException e) {
+      DLTKCore.error(e.getMessage(), e);
+    }
+    return "";
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptKeepBasicsHandler.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptKeepBasicsHandler.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptKeepBasicsHandler.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptKeepBasicsHandler.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,32 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.utils.apply;
+
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.resources.IFile;
+
+public class ApplyScriptKeepBasicsHandler extends AbstarctApplyScriptHandler {
+
+  @Override
+  AbstractApplyScriptHandlerJob getJob(ExecutionEvent event, IFile path) {
+    return new ApplyScriptKeepBasicsJob(event, path);
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptKeepBasicsJob.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptKeepBasicsJob.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptKeepBasicsJob.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptKeepBasicsJob.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,39 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.utils.apply;
+
+import org.apache.uima.analysis_engine.AnalysisEngine;
+import org.apache.uima.textmarker.engine.TextMarkerEngine;
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.resources.IFile;
+
+
+public class ApplyScriptKeepBasicsJob extends AbstractApplyScriptHandlerJob {
+
+  ApplyScriptKeepBasicsJob(ExecutionEvent event, IFile scriptFile) {
+    super(event, scriptFile, true);
+  }
+
+  @Override
+  void initAE(AnalysisEngine ae) {
+    ae.setConfigParameterValue(TextMarkerEngine.REMOVE_BASICS, false);
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptNoXMIHandler.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptNoXMIHandler.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptNoXMIHandler.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptNoXMIHandler.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,32 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.utils.apply;
+
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.resources.IFile;
+
+public class ApplyScriptNoXMIHandler extends AbstarctApplyScriptHandler {
+
+  @Override
+  AbstractApplyScriptHandlerJob getJob(ExecutionEvent event, IFile path) {
+    return new ApplyScriptNoXMIJob(event, path);
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptNoXMIJob.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptNoXMIJob.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptNoXMIJob.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptNoXMIJob.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,39 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.utils.apply;
+
+import org.apache.uima.analysis_engine.AnalysisEngine;
+import org.apache.uima.textmarker.engine.TextMarkerEngine;
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.resources.IFile;
+
+
+public class ApplyScriptNoXMIJob extends AbstractApplyScriptHandlerJob {
+
+  ApplyScriptNoXMIJob(ExecutionEvent event, IFile scriptFile) {
+    super(event, scriptFile, false);
+  }
+
+  @Override
+  void initAE(AnalysisEngine ae) {
+    ae.setConfigParameterValue(TextMarkerEngine.REMOVE_BASICS, false);
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptRemoveBasicsHandler.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptRemoveBasicsHandler.java?rev=1157050&view=auto
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--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptRemoveBasicsHandler.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptRemoveBasicsHandler.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,32 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.utils.apply;
+
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.resources.IFile;
+
+public class ApplyScriptRemoveBasicsHandler extends AbstarctApplyScriptHandler {
+
+  @Override
+  AbstractApplyScriptHandlerJob getJob(ExecutionEvent event, IFile path) {
+    return new ApplyScriptRemoveBasicsJob(event, path);
+  }
+
+}

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Added: uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptRemoveBasicsJob.java
URL: http://svn.apache.org/viewvc/uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptRemoveBasicsJob.java?rev=1157050&view=auto
==============================================================================
--- uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptRemoveBasicsJob.java (added)
+++ uima/sandbox/trunk/TextMarker/uimaj-ep-textmarker-addons/src/main/java/org/apache/uima/textmarker/utils/apply/ApplyScriptRemoveBasicsJob.java Fri Aug 12 11:14:14 2011
@@ -0,0 +1,39 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ * 
+ * http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+*/
+
+package org.apache.uima.textmarker.utils.apply;
+
+import org.apache.uima.analysis_engine.AnalysisEngine;
+import org.apache.uima.textmarker.engine.TextMarkerEngine;
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.resources.IFile;
+
+
+public class ApplyScriptRemoveBasicsJob extends AbstractApplyScriptHandlerJob {
+
+  ApplyScriptRemoveBasicsJob(ExecutionEvent event, IFile scriptFile) {
+    super(event, scriptFile, true);
+  }
+
+  @Override
+  void initAE(AnalysisEngine ae) {
+    ae.setConfigParameterValue(TextMarkerEngine.REMOVE_BASICS, true);
+  }
+
+}

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