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Posted to commits@ctakes.apache.org by ch...@apache.org on 2014/11/05 17:45:49 UTC
svn commit: r1636916 - in
/ctakes/trunk/ctakes-assertion/desc/analysis_engine:
GenericCleartkAnalysisEngine.xml HistoryCleartkAnalysisEngine.xml
PolarityCleartkAnalysisEngine.xml SubjectCleartkAnalysisEngine.xml
UncertaintyCleartkAnalysisEngine.xml
Author: chenpei
Date: Wed Nov 5 16:45:48 2014
New Revision: 1636916
URL: http://svn.apache.org/r1636916
Log:
CTAKES-326 - Added the descriptors for the new clearTK based Assertion annotators for backwards compatibility and needed by current DefaultAggregate pipelines.
Added:
ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml (with props)
ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml (with props)
ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml (with props)
ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml (with props)
ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml (with props)
Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml?rev=1636916&view=auto
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml (added)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014
@@ -0,0 +1,130 @@
+<?xml version="1.0" encoding="UTF-8"?><analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+ <primitive>true</primitive>
+ <annotatorImplementationName>org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine</annotatorImplementationName>
+ <analysisEngineMetaData>
+ <name>org.apache.ctakes.assertion.medfacts.cleartk.GenericCleartkAnalysisEngine</name>
+ <description>Descriptor automatically generated by uimaFIT</description>
+ <version>unknown</version>
+ <vendor>org.apache.ctakes.assertion.medfacts.cleartk</vendor>
+ <configurationParameters>
+ <configurationParameter>
+ <name>GoldViewName</name>
+ <description>view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PrintErrors</name>
+ <description>Print errors true/false</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>ProbabilityOfKeepingADefaultExample</name>
+ <description>probability that a default example should be retained for training</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PortionOfDataToUse</name>
+ <description>How much data to actually use during training (e.g. for building learning curves)</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>WhetherToDoFeatureSelection</name>
+ <description>the Chi-squared threshold at which features should be removed</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FEATURE_CONFIG</name>
+ <description>Feature configuration to use (for experiments)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FeatureSelectionURI</name>
+ <description>provides a URI where the feature selection data will be written</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>mapTrainFileToDomain</name>
+ <description>a map of filenames to their respective domains (i.e., directories that contain them)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierFactoryClassName</name>
+ <description>provides the full name of the ClassifierFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>dataWriterFactoryClassName</name>
+ <description>provides the full name of the DataWriterFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>isTraining</name>
+ <description>determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set.</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierJarPath</name>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ </configurationParameters>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>PrintErrors</name>
+ <value>
+ <boolean>false</boolean>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.JarClassifierFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>dataWriterFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.DefaultDataWriterFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierJarPath</name>
+ <value>
+ <string>org/apache/ctakes/assertion/models/generic/model.jar</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ <typePriorities/>
+ <fsIndexCollection/>
+ <capabilities/>
+ <operationalProperties>
+ <modifiesCas>true</modifiesCas>
+ <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+ <outputsNewCASes>false</outputsNewCASes>
+ </operationalProperties>
+ </analysisEngineMetaData>
+</analysisEngineDescription>
Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/GenericCleartkAnalysisEngine.xml
------------------------------------------------------------------------------
svn:eol-style = native
Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml?rev=1636916&view=auto
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml (added)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014
@@ -0,0 +1,130 @@
+<?xml version="1.0" encoding="UTF-8"?><analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+ <primitive>true</primitive>
+ <annotatorImplementationName>org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine</annotatorImplementationName>
+ <analysisEngineMetaData>
+ <name>org.apache.ctakes.assertion.medfacts.cleartk.HistoryCleartkAnalysisEngine</name>
+ <description>Descriptor automatically generated by uimaFIT</description>
+ <version>unknown</version>
+ <vendor>org.apache.ctakes.assertion.medfacts.cleartk</vendor>
+ <configurationParameters>
+ <configurationParameter>
+ <name>GoldViewName</name>
+ <description>view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PrintErrors</name>
+ <description>Print errors true/false</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>ProbabilityOfKeepingADefaultExample</name>
+ <description>probability that a default example should be retained for training</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PortionOfDataToUse</name>
+ <description>How much data to actually use during training (e.g. for building learning curves)</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>WhetherToDoFeatureSelection</name>
+ <description>the Chi-squared threshold at which features should be removed</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FEATURE_CONFIG</name>
+ <description>Feature configuration to use (for experiments)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FeatureSelectionURI</name>
+ <description>provides a URI where the feature selection data will be written</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>mapTrainFileToDomain</name>
+ <description>a map of filenames to their respective domains (i.e., directories that contain them)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierFactoryClassName</name>
+ <description>provides the full name of the ClassifierFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>dataWriterFactoryClassName</name>
+ <description>provides the full name of the DataWriterFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>isTraining</name>
+ <description>determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set.</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierJarPath</name>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ </configurationParameters>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>PrintErrors</name>
+ <value>
+ <boolean>false</boolean>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.JarClassifierFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>dataWriterFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.DefaultDataWriterFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierJarPath</name>
+ <value>
+ <string>org/apache/ctakes/assertion/models/historyOf/model.jar</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ <typePriorities/>
+ <fsIndexCollection/>
+ <capabilities/>
+ <operationalProperties>
+ <modifiesCas>true</modifiesCas>
+ <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+ <outputsNewCASes>false</outputsNewCASes>
+ </operationalProperties>
+ </analysisEngineMetaData>
+</analysisEngineDescription>
Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/HistoryCleartkAnalysisEngine.xml
------------------------------------------------------------------------------
svn:eol-style = native
Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml?rev=1636916&view=auto
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml (added)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014
@@ -0,0 +1,136 @@
+<?xml version="1.0" encoding="UTF-8"?><analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+ <primitive>true</primitive>
+ <annotatorImplementationName>org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine</annotatorImplementationName>
+ <analysisEngineMetaData>
+ <name>org.apache.ctakes.assertion.medfacts.cleartk.PolarityCleartkAnalysisEngine</name>
+ <description>Descriptor automatically generated by uimaFIT</description>
+ <version>unknown</version>
+ <vendor>org.apache.ctakes.assertion.medfacts.cleartk</vendor>
+ <configurationParameters>
+ <configurationParameter>
+ <name>GoldViewName</name>
+ <description>view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PrintErrors</name>
+ <description>Print errors true/false</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>ProbabilityOfKeepingADefaultExample</name>
+ <description>probability that a default example should be retained for training</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PortionOfDataToUse</name>
+ <description>How much data to actually use during training (e.g. for building learning curves)</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>WhetherToDoFeatureSelection</name>
+ <description>the Chi-squared threshold at which features should be removed</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FEATURE_CONFIG</name>
+ <description>Feature configuration to use (for experiments)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FeatureSelectionURI</name>
+ <description>provides a URI where the feature selection data will be written</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>mapTrainFileToDomain</name>
+ <description>a map of filenames to their respective domains (i.e., directories that contain them)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierFactoryClassName</name>
+ <description>provides the full name of the ClassifierFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>dataWriterFactoryClassName</name>
+ <description>provides the full name of the DataWriterFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>isTraining</name>
+ <description>determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set.</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierJarPath</name>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ </configurationParameters>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>PrintErrors</name>
+ <value>
+ <boolean>false</boolean>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.JarClassifierFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>dataWriterFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.DefaultDataWriterFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>FEATURE_CONFIG</name>
+ <value>
+ <string>DEP_REGEX</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierJarPath</name>
+ <value>
+ <string>org/apache/ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ <typePriorities/>
+ <fsIndexCollection/>
+ <capabilities/>
+ <operationalProperties>
+ <modifiesCas>true</modifiesCas>
+ <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+ <outputsNewCASes>false</outputsNewCASes>
+ </operationalProperties>
+ </analysisEngineMetaData>
+</analysisEngineDescription>
Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/PolarityCleartkAnalysisEngine.xml
------------------------------------------------------------------------------
svn:eol-style = native
Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml?rev=1636916&view=auto
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml (added)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014
@@ -0,0 +1,136 @@
+<?xml version="1.0" encoding="UTF-8"?><analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+ <primitive>true</primitive>
+ <annotatorImplementationName>org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine</annotatorImplementationName>
+ <analysisEngineMetaData>
+ <name>org.apache.ctakes.assertion.medfacts.cleartk.SubjectCleartkAnalysisEngine</name>
+ <description>Descriptor automatically generated by uimaFIT</description>
+ <version>unknown</version>
+ <vendor>org.apache.ctakes.assertion.medfacts.cleartk</vendor>
+ <configurationParameters>
+ <configurationParameter>
+ <name>GoldViewName</name>
+ <description>view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PrintErrors</name>
+ <description>Print errors true/false</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>ProbabilityOfKeepingADefaultExample</name>
+ <description>probability that a default example should be retained for training</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PortionOfDataToUse</name>
+ <description>How much data to actually use during training (e.g. for building learning curves)</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>WhetherToDoFeatureSelection</name>
+ <description>the Chi-squared threshold at which features should be removed</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FEATURE_CONFIG</name>
+ <description>Feature configuration to use (for experiments)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FeatureSelectionURI</name>
+ <description>provides a URI where the feature selection data will be written</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>mapTrainFileToDomain</name>
+ <description>a map of filenames to their respective domains (i.e., directories that contain them)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierFactoryClassName</name>
+ <description>provides the full name of the ClassifierFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>dataWriterFactoryClassName</name>
+ <description>provides the full name of the DataWriterFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>isTraining</name>
+ <description>determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set.</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierJarPath</name>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ </configurationParameters>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>PrintErrors</name>
+ <value>
+ <boolean>false</boolean>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.JarClassifierFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>dataWriterFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.DefaultDataWriterFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>FEATURE_CONFIG</name>
+ <value>
+ <string>DEP_REGEX</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierJarPath</name>
+ <value>
+ <string>org/apache/ctakes/assertion/models/subject/model.jar</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ <typePriorities/>
+ <fsIndexCollection/>
+ <capabilities/>
+ <operationalProperties>
+ <modifiesCas>true</modifiesCas>
+ <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+ <outputsNewCASes>false</outputsNewCASes>
+ </operationalProperties>
+ </analysisEngineMetaData>
+</analysisEngineDescription>
Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/SubjectCleartkAnalysisEngine.xml
------------------------------------------------------------------------------
svn:eol-style = native
Added: ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml?rev=1636916&view=auto
==============================================================================
--- ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml (added)
+++ ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml Wed Nov 5 16:45:48 2014
@@ -0,0 +1,136 @@
+<?xml version="1.0" encoding="UTF-8"?><analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+ <primitive>true</primitive>
+ <annotatorImplementationName>org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine</annotatorImplementationName>
+ <analysisEngineMetaData>
+ <name>org.apache.ctakes.assertion.medfacts.cleartk.UncertaintyCleartkAnalysisEngine</name>
+ <description>Descriptor automatically generated by uimaFIT</description>
+ <version>unknown</version>
+ <vendor>org.apache.ctakes.assertion.medfacts.cleartk</vendor>
+ <configurationParameters>
+ <configurationParameter>
+ <name>GoldViewName</name>
+ <description>view containing the manual identified annotations (especially EntityMention and EventMention annotations); needed for training</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PrintErrors</name>
+ <description>Print errors true/false</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>ProbabilityOfKeepingADefaultExample</name>
+ <description>probability that a default example should be retained for training</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>PortionOfDataToUse</name>
+ <description>How much data to actually use during training (e.g. for building learning curves)</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>WhetherToDoFeatureSelection</name>
+ <description>the Chi-squared threshold at which features should be removed</description>
+ <type>Float</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FEATURE_CONFIG</name>
+ <description>Feature configuration to use (for experiments)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>FeatureSelectionURI</name>
+ <description>provides a URI where the feature selection data will be written</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>mapTrainFileToDomain</name>
+ <description>a map of filenames to their respective domains (i.e., directories that contain them)</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierFactoryClassName</name>
+ <description>provides the full name of the ClassifierFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>dataWriterFactoryClassName</name>
+ <description>provides the full name of the DataWriterFactory class to be used.</description>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>isTraining</name>
+ <description>determines whether this annotator is writing training data or using a classifier to annotate. Normally inferred automatically based on whether or not a DataWriterFactory class has been set.</description>
+ <type>Boolean</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ <configurationParameter>
+ <name>classifierJarPath</name>
+ <type>String</type>
+ <multiValued>false</multiValued>
+ <mandatory>false</mandatory>
+ </configurationParameter>
+ </configurationParameters>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>PrintErrors</name>
+ <value>
+ <boolean>false</boolean>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.JarClassifierFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>dataWriterFactoryClassName</name>
+ <value>
+ <string>org.cleartk.ml.jar.DefaultDataWriterFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>FEATURE_CONFIG</name>
+ <value>
+ <string>DEP_REGEX</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
+ <name>classifierJarPath</name>
+ <value>
+ <string>org/apache/ctakes/assertion/models/uncertainty/model.jar</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ <typePriorities/>
+ <fsIndexCollection/>
+ <capabilities/>
+ <operationalProperties>
+ <modifiesCas>true</modifiesCas>
+ <multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+ <outputsNewCASes>false</outputsNewCASes>
+ </operationalProperties>
+ </analysisEngineMetaData>
+</analysisEngineDescription>
Propchange: ctakes/trunk/ctakes-assertion/desc/analysis_engine/UncertaintyCleartkAnalysisEngine.xml
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