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Posted to issues@spark.apache.org by "Hyukjin Kwon (JIRA)" <ji...@apache.org> on 2019/05/21 04:02:35 UTC
[jira] [Updated] (SPARK-19325) Running query hang-up 5min
[ https://issues.apache.org/jira/browse/SPARK-19325?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Hyukjin Kwon updated SPARK-19325:
---------------------------------
Labels: bulk-closed (was: )
> Running query hang-up 5min
> --------------------------
>
> Key: SPARK-19325
> URL: https://issues.apache.org/jira/browse/SPARK-19325
> Project: Spark
> Issue Type: Bug
> Components: SQL
> Affects Versions: 1.5.2
> Environment: OS: SUSE 12.1
> JDK: Oracle JDK 1.8.0_112
> Reporter: Weizhong
> Priority: Minor
> Labels: bulk-closed
>
> 1. Running query, 1 stage hang-up 5min(only read 1M data)
> 2. The stage is:
> {noformat}
> PhysicalRDD(read from parquet file) --> Filter --> ConvertToUnsafe --> BroadcastHashJoin --> TungstenProject --> BroadcastHashJoin --> TungstenProject --> TungstenExchange
> {noformat}
> 3. When hang-up, we dump the jstack, and details:
> {noformat}
> "Executor task launch worker-3" #147 daemon prio=5 os_prio=0 tid=0x00007fb5481af000 nid=0x3a166 runnable [0x00007fb4f18a6000]
> java.lang.Thread.State: RUNNABLE
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:219)
> at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:75)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:42)
> at org.apache.spark.scheduler.Task.run(Task.scala:90)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:253)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> Locked ownable synchronizers:
> - <0x00000002c590e7e0> (a java.util.concurrent.ThreadPoolExecutor$Worker)
> "Executor task launch worker-2" #146 daemon prio=5 os_prio=0 tid=0x00007fb548b15000 nid=0x3a137 runnable [0x00007fb4f31e3000]
> java.lang.Thread.State: RUNNABLE
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:219)
> at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:75)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:42)
> at org.apache.spark.scheduler.Task.run(Task.scala:90)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:253)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> Locked ownable synchronizers:
> - <0x00000002c590fab0> (a java.util.concurrent.ThreadPoolExecutor$Worker)
> "Executor task launch worker-1" #145 daemon prio=5 os_prio=0 tid=0x00007fb54a4c6000 nid=0x3a12f runnable [0x00007fb4f19a7000]
> java.lang.Thread.State: RUNNABLE
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:219)
> at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:75)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:42)
> at org.apache.spark.scheduler.Task.run(Task.scala:90)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:253)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> Locked ownable synchronizers:
> - <0x00000002c590ea30> (a java.util.concurrent.ThreadPoolExecutor$Worker)
> "Executor task launch worker-0" #144 daemon prio=5 os_prio=0 tid=0x00007fb54a4c7800 nid=0x3a12e waiting on condition [0x00007fb4f1cdf000]
> java.lang.Thread.State: RUNNABLE
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
> at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:219)
> at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:75)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:42)
> at org.apache.spark.scheduler.Task.run(Task.scala:90)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:253)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> Locked ownable synchronizers:
> - <0x00000002c5910ba8> (a java.util.concurrent.ThreadPoolExecutor$Worker)
> {noformat}
> From the jstack info, we can see it hang-up when do ConvertToUnsafe, call iter.hastNext
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