[jira] [Created] (ACCUMULO-1355) Accumulo ingestion hangs/fails for 300 MB+ file, local machine memory usage grows to 10GB+

["Nasheb Ismaily (JIRA)" <ji...@apache.org>]

Nasheb Ismaily created ACCUMULO-1355:
----------------------------------------

             Summary: Accumulo ingestion hangs/fails for 300 MB+ file, local machine memory usage grows to 10GB+
                 Key: ACCUMULO-1355
                 URL: https://issues.apache.org/jira/browse/ACCUMULO-1355
             Project: Accumulo
          Issue Type: Bug
          Components: client, thrift, tserver
    Affects Versions: 1.4.3, 1.4.2
            Reporter: Nasheb Ismaily
            Assignee: Billie Rinaldi
            Priority: Blocker


*Bug:*
I am attempting to ingest a 300+ MB file into Accumulo, however the ingestion process hangs and my local machines memory consumption grows to 10GB+.
The mutation is never put into accumulo.

*The file I am ingesting can be found here (needs to be unzipped):* http://www.epa.gov/ttn/atw/nata2005/emissions_mdbzip/2005natav3_ei_ca.zip
 
*I’ve attached a snippet of code used to ingest the data here:* http://pastebin.com/Yh4V6nng

*Initial Investigation:*
While attempting to upload the file, the thread which sends the mutation to the tablet ‘waits’ in the waitRTE() method which is called by synchronized void flush() in TabletServerBatchWriter.java and is never ‘woken up’ by a notify call. While ‘waiting’ my local machines memory allocation grows to 10 GB+. 

*Thread Stack Trace (from java profiler):*
java.nio.Bits.copyFromArray(Bits.java:699)
java.nio.DirectByteBuffer.put(DirectByteBuffer.java:360)
java.nio.DirectByteBuffer.put(DirectByteBuffer.java:331)
sun.nio.ch.IOUtil.write(IOUtil.java:35)
sun.nio.ch.SocketChannelImpl.write(SocketChannelImpl.java:336)
org.apache.hadoop.net.SocketOutputStream$Writer.performIO(SocketOutputStream.java:55)
org.apache.hadoop.net.SocketIOWithTimeout.doIO(SocketIOWithTimeout.java:142)
org.apache.hadoop.net.SocketOutputStream.write(SocketOutputStream.java:146)
org.apache.hadoop.net.SocketOutputStream.write(SocketOutputStream.java:107)
java.io.BufferedOutputStream.write(BufferedOutputStream.java:105)
org.apache.thrift.transport.TIOStreamTransport.write(TIOStreamTransport.java:145)
org.apache.thrift.transport.TFramedTransport.flush(TFramedTransport.java:157)
org.apache.accumulo.core.client.impl.ThriftTransportPool$CachedTTransport.flush(ThriftTransportPool.java:299)
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Client.send_applyUpdates(TabletClientService.java:449)
org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Client.applyUpdates(TabletClientService.java:436)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.apache.accumulo.cloudtrace.instrument.thrift.TraceWrap$2.invoke(TraceWrap.java:84)
com.sun.proxy.$Proxy7.applyUpdates(Unknown Source)
org.apache.accumulo.core.client.impl.TabletServerBatchWriter$MutationWriter.sendMutationsToTabletServer(TabletServerBatchWriter.java:768)
org.apache.accumulo.core.client.impl.TabletServerBatchWriter$MutationWriter.access$1400(TabletServerBatchWriter.java:536)
org.apache.accumulo.core.client.impl.TabletServerBatchWriter$MutationWriter$SendTask.send(TabletServerBatchWriter.java:700)
org.apache.accumulo.core.client.impl.TabletServerBatchWriter$MutationWriter$SendTask.run(TabletServerBatchWriter.java:671)
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:439)
java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
java.util.concurrent.FutureTask.run(FutureTask.java:138)
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
java.lang.Thread.run(Thread.java:680)

*Tserver log error:*
2013-04-26 15:36:25,253 [server.TNonblockingServer] ERROR: Unexpected exception while invoking!
java.lang.RuntimeException: No Such SessionID
	at org.apache.accumulo.server.tabletserver.TabletServer$ThriftClientHandler.applyUpdates(TabletServer.java:1433)
	at sun.reflect.GeneratedMethodAccessor12.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:601)
	at org.apache.accumulo.cloudtrace.instrument.thrift.TraceWrap$1.invoke(TraceWrap.java:59)
	at com.sun.proxy.$Proxy2.applyUpdates(Unknown Source)
	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor$applyUpdates.process(TabletClientService.java:2315)
	at org.apache.accumulo.core.tabletserver.thrift.TabletClientService$Processor.process(TabletClientService.java:2037)
	at org.apache.accumulo.server.util.TServerUtils$TimedProcessor.process(TServerUtils.java:154)
	at org.apache.thrift.server.TNonblockingServer$FrameBuffer.invoke(TNonblockingServer.java:631)
	at org.apache.accumulo.server.util.TServerUtils$THsHaServer$Invocation.run(TServerUtils.java:202)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34)
	at java.lang.Thread.run(Thread.java:722)





--
This message is automatically generated by JIRA.
If you think it was sent incorrectly, please contact your JIRA administrators
For more information on JIRA, see: http://www.atlassian.com/software/jira