Re: Smoking Status Classification from Clinical Pipeline

[Justin Zhang <ju...@gmail.com>]

Hello everyone and Pei,

Was anyone able to run "SmokingStatus Classification" from Clinical
Pipeline? As the link says:

https://issues.apache.org/jira/browse/CTAKES-370?jql=component%20%3D%20ctakes-smoking-status%20AND%20project%20%3D%20CTAKES%20AND%20resolution%20%3D%20Unresolved%20ORDER%20BY%20priority%20DESC

What is the difference of the AE "AggregatePlaintextFastUMLSProcessor.xml",
current version (snapshot check out) and the attached file in the above
link.

I could be able to run Clinical Pipeline
"AggregatePlaintextFastUMLSProcessor.xml"
analysis engine from Eclipse with current version, but give me error with
attached version in the link "No .xml file with name
"org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in
the class path or data path.

Thanks,

Justin


On Thu, Jul 30, 2015 at 4:10 PM, Justin Zhang <ju...@gmail.com>
wrote:

> Thanks Pei,
>
> I will test out if it works following the instruction. I will make a
> report.
>
> Justin
>
> On Thu, Jul 30, 2015 at 4:02 PM, Pei Chen <ch...@apache.org> wrote:
>
>> Justin,
>> Is this still an issue for you?  I believe there was a known issue and
>> someone submitted a patch:
>>
>> https://issues.apache.org/jira/browse/CTAKES-370?jql=component%20%3D%20ctakes-smoking-status%20AND%20project%20%3D%20CTAKES%20AND%20resolution%20%3D%20Unresolved%20ORDER%20BY%20priority%20DESC
>>
>> [You probably don't want to use any references to the
>> ctakes-smoking-status-res/target descriptors at least until the issue
>> has been resolved]
>>
>> On Mon, Jul 27, 2015 at 6:04 PM, Justin Zhang <ju...@gmail.com>
>> wrote:
>> > Hello Everyone,
>> >
>> > Where is the file
>> > ""org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" the
>> program is
>> > looking for? Any suggestions for trouble shooting? Where the
>> > file TokenizerAnnotator.xml should be in the path? and Where is the file
>> > online (to check if the local file is the one required?)
>> >
>> > error message:
>> >
>> > Caused by: org.apache.uima.resource.ResourceInitializationException: An
>> > import could not be resolved.  No .xml file with name
>> > "org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in
>> > the class path or data path. (Descriptor:
>> >
>> file:/Users/justin/App/eclipse_mars/workspace_eclipse_mars/ctakes/ctakes-smoking-status-res/target/classes/org/apache/ctakes/smokingstatus/analysis_engine/ProductionPostSentenceAggregate_step1.xml)
>> > at
>> >
>> org.apache.ctakes.smokingstatus.ae.ClassifiableEntries.initialize(ClassifiableEntries.java:178)
>> > at
>> >
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
>> >
>> > --
>> > Justin
>>
>
>
>
> --
> Justin
>



-- 
Justin