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Posted to issues@arrow.apache.org by "Wayne Tu (Jira)" <ji...@apache.org> on 2022/09/12 22:09:00 UTC
[jira] [Created] (ARROW-17692) Arrow Package Installation: undefined symbol error
Wayne Tu created ARROW-17692:
--------------------------------
Summary: Arrow Package Installation: undefined symbol error
Key: ARROW-17692
URL: https://issues.apache.org/jira/browse/ARROW-17692
Project: Apache Arrow
Issue Type: Bug
Reporter: Wayne Tu
Hi,
I encountered "undefined symbol: _ZTIN3Aws4Auth22AWSCredentialsProviderE
Error: loading failed
Execution halted
ERROR: loading failed" errors when trying to install arrow under R 4.1.3 with devtoolset-8 (gcc version 8.3.1).
> Sys.getenv("LD_LIBRARY_PATH")
[1] "/usr/local/lib64:/usr/local/lib64/cmake:/lib64:/opt/rh/devtoolset-8/root/usr/lib64:/opt/rh/devtoolset-8/root/usr/lib/gcc/x86_64-redhat-linux/8:/opt/rh/devtoolset-8/root/usr/libexec/gcc/x86_64-redhat-linux/8:/opt/R/4.1.3/lib/R/lib:/usr/local/lib:/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-1.el7_9.x86_64/jre/lib/amd64/server"
> Sys.getenv("PATH")
[1] "/apps/Python/3.9.12/bin:/usr/local/cmake-3.21.4-linux-x86_64/bin:/opt/rh/devtoolset-8/root/usr/bin:/apps/bin:/usr/local/bin:/bin:/usr/bin"
> Sys.setenv("NOT_CRAN"=TRUE)
> Sys.setenv("LIBARROW_BINARY" = FALSE)
> Sys.setenv("ARROW_R_DEV" = TRUE)
> Sys.setenv("ARROW_USE_PKG_CONFIG" = FALSE)
> Sys.setenv(ARROW_S3 = "ON")
> Sys.setenv(CMAKE = "/apps/cmake-3.21.4-linux-x86_64/bin/cmake")
> sessionInfo()
R version 4.1.3 (2022-03-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server 7.9 (Maipo)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblasp-r0.3.3.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.1.3
> arrow::arrow_available()
Error in loadNamespace(x) : there is no package called ‘arrow’
> system("gcc -v")
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/rh/devtoolset-8/root/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/opt/rh/devtoolset-8/root/usr --mandir=/opt/rh/devtoolset-8/root/usr/share/man --infodir=/opt/rh/devtoolset-8/root/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --with-default-libstdcxx-abi=gcc4-compatible --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-8.3.1-20190311/obj-x86_64-redhat-linux/isl-install --disable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 8.3.1 20190311 (Red Hat 8.3.1-3) (GCC)
> install.packages(mpkg, repos=NULL, type="source")
......
......
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/user1/R/x86_64-pc-linux-gnu/4.1.3/00LOCK-arrow/00new/arrow/libs/arrow.so':
/home/user1/R/x86_64-pc-linux-gnu/4.1.3/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: _ZTIN3Aws4Auth22AWSCredentialsProviderE
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/user1/R/x86_64-pc-linux-gnu/4.1.3/arrow’
Warning message:
In install.packages(mpkg, repos = NULL, type = "source") :
installation of package ‘/apps/tmp/RtmpEqJN3J/downloaded_packages/arrow_8.0.0.tar.gz’ had non-zero exit status
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