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Posted to commits@taverna.apache.org by al...@apache.org on 2016/07/29 12:55:55 UTC
[03/10] incubator-taverna-common-activities git commit: Merge
remote-tracking branch 'apache/docker' into docker
Merge remote-tracking branch 'apache/docker' into docker
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/commit/571880db
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/tree/571880db
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/diff/571880db
Branch: refs/heads/docker
Commit: 571880db857b3e8105aeff0de8dd86b48e509b38
Parents: 0c45da3 19b2dd0
Author: Nadeesh Dilanga <na...@gmail.com>
Authored: Thu Jun 30 22:46:18 2016 -0400
Committer: Nadeesh Dilanga <na...@gmail.com>
Committed: Thu Jun 30 22:46:18 2016 -0400
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.travis.yml | 15 +
LICENSE | 10 +
README.md | 120 +-
pom.xml | 143 +-
taverna-beanshell-activity/pom.xml | 5 +-
.../src/main/resources/schema.json | 3 +
taverna-docker-activity/pom.xml | 2 +-
taverna-external-tool-activity/pom.xml | 7 +-
.../inb/knowarc/gui/AskUserForPwPopup.java | 77 -
.../inb/knowarc/gui/PleaseWaitDialog.java | 75 -
.../knowarc/usecases/RuntimeEnvironment.java | 253 -
.../usecases/RuntimeEnvironmentConstraint.java | 162 -
.../inb/knowarc/usecases/ScriptInput.java | 136 -
.../inb/knowarc/usecases/ScriptInputStatic.java | 75 -
.../inb/knowarc/usecases/ScriptInputUser.java | 101 -
.../inb/knowarc/usecases/ScriptOutput.java | 90 -
.../knowarc/usecases/UseCaseDescription.java | 899 -
.../knowarc/usecases/UseCaseEnumeration.java | 113 -
.../usecases/invocation/AskUserForPw.java | 34 -
.../invocation/InvocationException.java | 25 -
.../usecases/invocation/UseCaseInvocation.java | 324 -
.../local/LocalUseCaseInvocation.java | 563 -
.../ssh/SshAutoLoginTrustEveryone.java | 72 -
.../usecases/invocation/ssh/SshNode.java | 159 -
.../usecases/invocation/ssh/SshNodeFactory.java | 56 -
.../usecases/invocation/ssh/SshPool.java | 148 -
.../usecases/invocation/ssh/SshReference.java | 208 -
.../knowarc/usecases/invocation/ssh/SshUrl.java | 153 -
.../invocation/ssh/SshUrlToSshReference.java | 43 -
.../invocation/ssh/SshUseCaseInvocation.java | 563 -
.../externaltool/ExternalToolActivity.java | 21 +-
.../ExternalToolActivityConfigurationBean.java | 8 +-
.../ExternalToolActivityMimeTypeChecker.java | 5 +-
.../externaltool/InvocationCreator.java | 7 +-
.../externaltool/RetrieveLoginFromTaverna.java | 2 +-
.../externaltool/desc/RuntimeEnvironment.java | 250 +
.../desc/RuntimeEnvironmentConstraint.java | 160 +
.../externaltool/desc/ScriptInput.java | 134 +
.../externaltool/desc/ScriptInputStatic.java | 73 +
.../externaltool/desc/ScriptInputUser.java | 99 +
.../externaltool/desc/ScriptOutput.java | 88 +
.../externaltool/desc/ToolDescription.java | 897 +
.../desc/ToolDescriptionParser.java | 111 +
.../externaltool/invocation/AskUserForPw.java | 32 +
.../invocation/InvocationException.java | 36 +
.../externaltool/invocation/ToolInvocation.java | 321 +
.../ExternalToolLocalInvocationMechanism.java | 4 +-
.../local/LocalInvocationCreator.java | 14 +-
.../local/LocalInvocationPersister.java | 8 +-
.../local/LocalMechanismCreator.java | 4 +-
.../externaltool/local/LocalToolInvocation.java | 560 +
.../activities/externaltool/package.html | 17 +
.../ssh/ExternalToolSshInvocationMechanism.java | 7 +-
.../ssh/SshAutoLoginTrustEveryone.java | 69 +
.../externaltool/ssh/SshInvocationCreator.java | 19 +-
.../ssh/SshInvocationPersister.java | 10 +-
.../externaltool/ssh/SshMechanismCreator.java | 6 +-
.../activities/externaltool/ssh/SshNode.java | 157 +
.../externaltool/ssh/SshNodeFactory.java | 66 +
.../activities/externaltool/ssh/SshPool.java | 157 +
.../externaltool/ssh/SshReference.java | 222 +
.../externaltool/ssh/SshToolInvocation.java | 560 +
.../activities/externaltool/ssh/SshUrl.java | 163 +
.../externaltool/ssh/SshUrlToSshReference.java | 54 +
...pache.taverna.reference.ExternalReferenceSPI | 2 +-
...verna.reference.ValueToReferenceConverterSPI | 2 +-
.../spring/external-tool-activity-context.xml | 4 +-
.../invocation/ssh/SshReference.hbm.xml | 41 -
.../externaltool/ssh/SshReference.hbm.xml | 41 +
taverna-interaction-activity/pom.xml | 9 +-
.../src/main/resources/Authorize.vm | 17 +
.../src/main/resources/MasterPassword.vm | 17 +
.../src/main/resources/TrustedCertificate.vm | 17 +
.../src/main/resources/TruststorePassword.vm | 17 +
.../src/main/resources/UsernamePassword.vm | 17 +
.../resources/abdera/adapter/feed.properties | 14 +
.../src/main/resources/ask.vm | 17 +
.../src/main/resources/choose.vm | 17 +
.../src/main/resources/index | 14 +
.../src/main/resources/interaction.css | 16 +
.../src/main/resources/interaction.vm | 17 +
.../src/main/resources/notify.vm | 17 +
.../src/main/resources/schema.json | 5 +-
.../src/main/resources/select.vm | 17 +
.../src/main/resources/tell.vm | 17 +
.../src/main/resources/warn.vm | 17 +
taverna-rest-activity/pom.xml | 189 +-
.../src/main/resources/schema.json | 3 +
.../rest/ApacheHttpClientUsageTest.java.bak | 215 -
.../rest/ExampleActivityTest.java.bak | 153 -
taverna-spreadsheet-import-activity/pom.xml | 5 +-
.../taverna/activities/spreadsheet/package.html | 17 +
.../src/main/resources/schema.json | 3 +
taverna-wsdl-activity/pom.xml | 14 +-
.../apache/taverna/activities/wsdl/package.html | 17 +
.../src/main/resources/schema.json | 3 +
.../src/main/resources/xml-splitter.schema.json | 2 +
.../activities/wsdl/WSRFActivityTest.java | 16 +-
...XMLSplitterConfigurationBeanBuilderTest.java | 18 +
.../src/test/resources/log4j.properties | 15 +
.../wsrf/counterService/CounterService_.wsdl | 9 -
.../wsdl/wsrf/counterService/WS-Addressing.xsd | 121 -
.../wsdl/wsrf/counterService/WS-BaseFaults.xsd | 47 -
.../wsdl/wsrf/counterService/WS-BaseN.wsdl | 298 -
.../wsdl/wsrf/counterService/WS-BaseN.xsd | 50 -
.../counterService/WS-ResourceLifetime.wsdl | 117 -
.../wsrf/counterService/WS-ResourceLifetime.xsd | 26 -
.../counterService/WS-ResourceProperties.wsdl | 240 -
.../counterService/WS-ResourceProperties.xsd | 42 -
.../wsrf/counterService/counter_bindings.wsdl | 157 -
.../wsrf/counterService/counter_flattened.wsdl | 111 -
.../activities/wsdl/wsrf/counterService/xml.xsd | 105 -
taverna-wsdl-generic/pom.xml | 90 +-
.../org/apache/taverna/wsdl/parser/package.html | 17 +
.../org/apache/taverna/wsdl/soap/package.html | 17 +
.../src/main/resources/META-INF/LICENSE | 235 +
.../taverna/wsdl/parser/WSDLParserTest.java | 8 +-
.../taverna/wsdl/parser/WSRFParserTest.java | 7 +-
.../wsdl/soap/LiteralBodyBuilderTest.java | 10 +-
.../wsdl/testutils/LocationConstants.java | 2 +-
.../taverna/wsdl/testutils/WSDLTestHelper.java | 89 +-
.../wsdl/xmlsplitter/XMLInputSplitterTest.java | 8 +-
.../wsdl/xmlsplitter/XMLOutputSplitterTest.java | 4 +-
.../getComplexWithInternalListResponse.xml | 20 -
.../src/test/resources/jws-splitter-input.xml | 95 -
.../src/test/resources/log4j.properties | 15 +
.../TAV-744/InstrumentServiceContextTypes.xsd | 12 -
.../parser/TAV-744/InstrumentServiceTypes.xsd | 12 -
.../wsdl/parser/TAV-744/InstrumentService_.wsdl | 129 -
.../parser/TAV-744/InstrumentService__.wsdl | 9 -
.../TAV-744/InstrumentService_bindings.wsdl | 97 -
.../wsdl/parser/TAV-744/ServiceSecurity.wsdl | 72 -
.../wsdl/parser/TAV-744/WS-Addressing.xsd | 121 -
.../wsdl/parser/TAV-744/WS-BaseFaults.wsdl | 22 -
.../wsdl/parser/TAV-744/WS-BaseFaults.xsd | 47 -
.../taverna/wsdl/parser/TAV-744/WS-BaseN.wsdl | 298 -
.../taverna/wsdl/parser/TAV-744/WS-BaseN.xsd | 50 -
.../parser/TAV-744/WS-ResourceLifetime.wsdl | 117 -
.../wsdl/parser/TAV-744/WS-ResourceLifetime.xsd | 26 -
.../parser/TAV-744/WS-ResourceProperties.wsdl | 240 -
.../parser/TAV-744/WS-ResourceProperties.xsd | 42 -
.../taverna/wsdl/parser/TAV-744/security.xsd | 78 -
.../apache/taverna/wsdl/parser/TAV-744/xml.xsd | 105 -
.../wsrf/counterService/CounterService_.wsdl | 9 -
.../wsrf/counterService/WS-Addressing.xsd | 121 -
.../wsrf/counterService/WS-BaseFaults.xsd | 47 -
.../parser/wsrf/counterService/WS-BaseN.wsdl | 298 -
.../parser/wsrf/counterService/WS-BaseN.xsd | 50 -
.../counterService/WS-ResourceLifetime.wsdl | 117 -
.../wsrf/counterService/WS-ResourceLifetime.xsd | 26 -
.../counterService/WS-ResourceProperties.wsdl | 240 -
.../counterService/WS-ResourceProperties.xsd | 42 -
.../wsrf/counterService/counter_bindings.wsdl | 157 -
.../wsrf/counterService/counter_flattened.wsdl | 111 -
.../wsdl/parser/wsrf/counterService/xml.xsd | 105 -
.../testwsdls/CurrencyExchangeService.wsdl | 37 -
.../src/test/resources/testwsdls/GoViz.wsdl | 202 -
.../testwsdls/MyService-rpc-literal.wsdl | 392 -
.../src/test/resources/testwsdls/SBWReader.wsdl | 602 -
.../testwsdls/TestServices-rpcencoded.wsdl | 396 -
.../testwsdls/TestServices-unwrapped.wsdl | 434 -
.../src/test/resources/testwsdls/VSOi.wsdl | 305 -
.../src/test/resources/testwsdls/bind.wsdl | 354 -
.../test/resources/testwsdls/eutils/efetch.xsd | 118 -
.../resources/testwsdls/eutils/efetch_bio.xsd | 18079 -----------------
.../resources/testwsdls/eutils/efetch_nlmc.xsd | 1021 -
.../resources/testwsdls/eutils/efetch_pmc.xsd | 5910 ------
.../testwsdls/eutils/efetch_pubmed.xsd | 359 -
.../resources/testwsdls/eutils/efetch_taxon.xsd | 150 -
.../test/resources/testwsdls/eutils/egquery.xsd | 60 -
.../test/resources/testwsdls/eutils/einfo.xsd | 95 -
.../test/resources/testwsdls/eutils/elink.xsd | 188 -
.../test/resources/testwsdls/eutils/esearch.xsd | 165 -
.../test/resources/testwsdls/eutils/espell.xsd | 60 -
.../resources/testwsdls/eutils/esummary.xsd | 85 -
.../test/resources/testwsdls/eutils/eutils.wsdl | 333 -
.../resources/testwsdls/eutils/eutils_lite.wsdl | 289 -
.../test/resources/testwsdls/jws-online.wsdl | 1001 -
.../test/resources/testwsdls/jws_online.wsdl | 1001 -
.../src/test/resources/testwsdls/ma.wsdl | 1901 --
.../testwsdls/menagerie-complex-rpc.wsdl | 208 -
.../src/test/resources/testwsdls/prodoric.wsdl | 360 -
.../src/test/resources/testwsdls/whatizit.wsdl | 233 -
taverna-xpath-activity/pom.xml | 95 +-
.../src/main/resources/schema.json | 3 +
185 files changed, 5453 insertions(+), 43720 deletions(-)
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http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/571880db/taverna-docker-activity/pom.xml
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