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Posted to notifications@ctakes.apache.org by "Kyle Rasku (Jira)" <ji...@apache.org> on 2021/01/26 01:58:00 UTC
[jira] [Closed] (CTAKES-552) Problems with sno_rx_16ab.xml after
patch application
[ https://issues.apache.org/jira/browse/CTAKES-552?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Kyle Rasku closed CTAKES-552.
-----------------------------
Fix Version/s: 4.0.0.1
Resolution: Cannot Reproduce
> Problems with sno_rx_16ab.xml after patch application
> -----------------------------------------------------
>
> Key: CTAKES-552
> URL: https://issues.apache.org/jira/browse/CTAKES-552
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-dictionary-lookup
> Affects Versions: 4.0.0.1
> Environment: Windows 10
> Reporter: Kyle Rasku
> Priority: Major
> Fix For: 4.0.0.1
>
>
> Hello All,
>
> Attempted to download and install the patch version on Windows 10 today.
>
> I tried to run ClinicalPipeline with my API Key (which I have already validated via the UMLS API test site):
>
> {{bin\runClinicalPipeline -i C:\Input\MyNotes\ --xmiOut C:\Output\MyNotes\ *--key 00a111b3-4c55-5555-5d66-66e7f888ghij*}}
> where{{ 00a111b3-4c55-5555-5d66-66e7f888ghij}} is my _Key_.
>
> Got:
>
> +*(With just install of 4.0.0.1)*+
>
> 22 Jan 2021 17:00:07 ERROR FileLocator - Could not find org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml as absolute or in $CLASSPATH :
>
> +*(After attempting to xcopy the 4.0 SourceForge resources directory and re-run)*+
>
> 22 Jan 2021 16:43:57 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml22 Jan 2021 16:43:57 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
> 22 Jan 2021 16:43:57 INFO UmlsUserApprover - Checking UMLS Account at [https://utslogin.nlm.nih.gov/cas/v1/api-key]:
> ...
> 22 Jan 2021 16:43:58 ERROR UmlsUserApprover - Server returned HTTP response code: 401 for URL: [https://utslogin.nlm.nih.gov/cas/v1/api-key]22 Jan 2021 16:43:58 ERROR PiperFileRunner - Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>)
>
> Does anyone please know how to fix this?
> Is there something in the file I can modify to make it work?
>
> Thank you so much.
> Kylie
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