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Posted to issues@airavata.apache.org by "Sudhakar Pamidighantam (JIRA)" <ji...@apache.org> on 2018/02/16 21:29:00 UTC
[jira] [Commented] (AIRAVATA-2683) when parallelism type is blank
for non serial the job submission/script fails
[ https://issues.apache.org/jira/browse/AIRAVATA-2683?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16367897#comment-16367897 ]
Sudhakar Pamidighantam commented on AIRAVATA-2683:
--------------------------------------------------
2018-02-16 16:13:29,715 [pool-7-thread-34] ERROR o.a.a.g.i.t.DefaultJobSubmissionTask process_id=PROCESS_ae9bed45-96ce-47e4-892a-51fb89636340, token_id=3d65bf6d-2c9f-4166-a51b-e76e0022bd3b, experiment_id=psitest_24f232db-2082-49b7-adc6-ff23f9406b1a, gateway_id=seagrid - Error occurred while submitting the job
org.apache.airavata.gfac.core.GFacException: Parallelism prefix is not defined for given parallelism type OPENMP.. Please define the parallelism prefix at App Catalog
at org.apache.airavata.gfac.core.GFacUtils.createGroovyMap(GFacUtils.java:569)
at org.apache.airavata.gfac.impl.task.DefaultJobSubmissionTask.execute(DefaultJobSubmissionTask.java:72)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:814)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeJobSubmission(GFacEngineImpl.java:510)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:386)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
2-49b7-adc6-ff23f9406b1a, gateway_id=seagrid - GFac Worker throws an exception
org.apache.airavata.gfac.core.GFacException: Error: userFriendly msg :Error while executing JOB_SUBMISSION task, actual msg :expId: psitest_24f232db-2082-49b7-adc6-ff23f9406b1a, processId: PROCESS_ae9bed45-96ce-47e4-892a-51fb89636340, taskId: TASK_7a89c904-7ef5-4fd4-ad5a-67717574c573, type: JOB_SUBMISSION :- JOB_SUBMISSION failed. Reason: Error occurred while submitting the job
at org.apache.airavata.gfac.impl.GFacEngineImpl.checkFailures(GFacEngineImpl.java:628)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeJobSubmission(GFacEngineImpl.java:514)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:386)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
> when parallelism type is blank for non serial the job submission/script fails
> ------------------------------------------------------------------------------
>
> Key: AIRAVATA-2683
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2683
> Project: Airavata
> Issue Type: Bug
> Reporter: Sudhakar Pamidighantam
> Priority: Major
>
> When parallelism type is blank for non serial the job submission/script fails but the error suggests job submission error with no error message
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