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Posted to issues@spark.apache.org by "Shardul Mahadik (Jira)" <ji...@apache.org> on 2021/02/20 02:11:00 UTC
[jira] [Created] (SPARK-34477) Kryo NPEs when serializing Avro
GenericData objects (except GenericRecord)
Shardul Mahadik created SPARK-34477:
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Summary: Kryo NPEs when serializing Avro GenericData objects (except GenericRecord)
Key: SPARK-34477
URL: https://issues.apache.org/jira/browse/SPARK-34477
Project: Spark
Issue Type: Bug
Components: Spark Core
Affects Versions: 3.0.0, 2.0.0
Reporter: Shardul Mahadik
SPARK-746 added KryoSerializer for GenericRecord and GenericData.Record Avro objects. However, Kryo serialization of other GenericData types like array, enum and fixed fails. Note that if such objects are within a GenericRecord, then current code works. However if these types are top level objects we want to distribute, then Kryo fails.
We should register KryoSerializer(s) for these GenericData types.
Code to reproduce:
{code:scala}
import org.apache.avro.{Schema, SchemaBuilder}
import org.apache.avro.generic.GenericData.Array
val arraySchema = SchemaBuilder.array().items().intType()
val array = new Array[Integer](1, arraySchema)
array.add(1)
sc.parallelize((0 until 10).map((_, array)), 2).collect
{code}
Similar code can be written for enums and fixed types
Errors:
GenericData.Array
{code:java}
java.io.IOException: java.lang.NullPointerException
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1410)
at org.apache.spark.rdd.ParallelCollectionPartition.readObject(ParallelCollectionRDD.scala:69)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1158)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2176)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2067)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1571)
at java.io.ObjectInputStream.defaultReadFields(ObjectInputStream.java:2285)
at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:2209)
at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2067)
at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1571)
at java.io.ObjectInputStream.readObject(ObjectInputStream.java:431)
at org.apache.spark.serializer.JavaDeserializationStream.readObject(JavaSerializer.scala:76)
at org.apache.spark.serializer.JavaSerializerInstance.deserialize(JavaSerializer.scala:115)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:458)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NullPointerException
at org.apache.avro.generic.GenericData$Array.add(GenericData.java:383)
at java.util.AbstractList.add(AbstractList.java:108)
at com.esotericsoftware.kryo.serializers.CollectionSerializer.read(CollectionSerializer.java:134)
at com.esotericsoftware.kryo.serializers.CollectionSerializer.read(CollectionSerializer.java:40)
at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:731)
at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:391)
at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:302)
at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:813)
at com.twitter.chill.WrappedArraySerializer.read(WrappedArraySerializer.scala:35)
at com.twitter.chill.WrappedArraySerializer.read(WrappedArraySerializer.scala:23)
at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:813)
at org.apache.spark.serializer.KryoDeserializationStream.readObject(KryoSerializer.scala:303)
at org.apache.spark.rdd.ParallelCollectionPartition.$anonfun$readObject$2(ParallelCollectionRDD.scala:79)
at org.apache.spark.rdd.ParallelCollectionPartition.$anonfun$readObject$2$adapted(ParallelCollectionRDD.scala:79)
at org.apache.spark.util.Utils$.deserializeViaNestedStream(Utils.scala:171)
at org.apache.spark.rdd.ParallelCollectionPartition.$anonfun$readObject$1(ParallelCollectionRDD.scala:79)
at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1403)
... 20 more
{code}
GenericData.EnumSymbol
{code:java}
com.esotericsoftware.kryo.KryoException: java.lang.NullPointerException
Serialization trace:
props (org.apache.avro.Schema$EnumSchema)
schema (org.apache.avro.generic.GenericData$EnumSymbol)
at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:101)
at com.esotericsoftware.kryo.serializers.FieldSerializer.write(FieldSerializer.java:508)
at com.esotericsoftware.kryo.Kryo.writeObject(Kryo.java:575)
at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:79)
at com.esotericsoftware.kryo.serializers.FieldSerializer.write(FieldSerializer.java:508)
at com.esotericsoftware.kryo.Kryo.writeClassAndObject(Kryo.java:651)
at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.write(DefaultArraySerializers.java:361)
at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.write(DefaultArraySerializers.java:302)
at com.esotericsoftware.kryo.Kryo.writeClassAndObject(Kryo.java:651)
at org.apache.spark.serializer.KryoSerializerInstance.serialize(KryoSerializer.scala:384)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:543)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NullPointerException
at org.apache.avro.JsonProperties$2$1$1.<init>(JsonProperties.java:175)
at org.apache.avro.JsonProperties$2$1.iterator(JsonProperties.java:174)
at com.esotericsoftware.kryo.serializers.MapSerializer.write(MapSerializer.java:98)
at com.esotericsoftware.kryo.serializers.MapSerializer.write(MapSerializer.java:39)
at com.esotericsoftware.kryo.Kryo.writeObject(Kryo.java:575)
at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:79)
... 13 more
{code}
GenericData.Fixed
{code:java}
com.esotericsoftware.kryo.KryoException: java.lang.NullPointerException
Serialization trace:
props (org.apache.avro.Schema$FixedSchema)
schema (org.apache.avro.generic.GenericData$Fixed)
at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:101)
at com.esotericsoftware.kryo.serializers.FieldSerializer.write(FieldSerializer.java:508)
at com.esotericsoftware.kryo.Kryo.writeObject(Kryo.java:575)
at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:79)
at com.esotericsoftware.kryo.serializers.FieldSerializer.write(FieldSerializer.java:508)
at com.esotericsoftware.kryo.Kryo.writeClassAndObject(Kryo.java:651)
at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.write(DefaultArraySerializers.java:361)
at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.write(DefaultArraySerializers.java:302)
at com.esotericsoftware.kryo.Kryo.writeClassAndObject(Kryo.java:651)
at org.apache.spark.serializer.KryoSerializerInstance.serialize(KryoSerializer.scala:384)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:543)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NullPointerException
at org.apache.avro.JsonProperties$2$1$1.<init>(JsonProperties.java:175)
at org.apache.avro.JsonProperties$2$1.iterator(JsonProperties.java:174)
at com.esotericsoftware.kryo.serializers.MapSerializer.write(MapSerializer.java:98)
at com.esotericsoftware.kryo.serializers.MapSerializer.write(MapSerializer.java:39)
at com.esotericsoftware.kryo.Kryo.writeObject(Kryo.java:575)
at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:79)
... 13 more
{code}
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