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Posted to commits@airavata.apache.org by sa...@apache.org on 2014/04/04 11:02:58 UTC
[1/5] https://issues.apache.org/jira/browse/AIRAVATA-1121 + disabling
some test cases that fail due to unsupported workflow for this version
Repository: airavata
Updated Branches:
refs/heads/master 1301e2a9e -> a2dcc366b
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/war/NOTICE
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/war/NOTICE b/modules/distribution/airavata-server/src/main/resources/war/NOTICE
deleted file mode 100644
index adef397..0000000
--- a/modules/distribution/airavata-server/src/main/resources/war/NOTICE
+++ /dev/null
@@ -1,163 +0,0 @@
-Apache Airavata
-Copyright 2012 The Apache Software Foundation
-
-This product includes software developed at
-The Apache Software Foundation (http://www.apache.org/).
-
-===============================================================================
-Apache Xerces Java Notice:
-
- Portions of this software were originally based on the following:
- - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
- - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
- - voluntary contributions made by Paul Eng on behalf of the
- Apache Software Foundation that were originally developed at iClick, Inc.,
- software copyright (c) 1999.
-
-================================================================================
-Apache XmlBeans Notice:
-
- Portions of this software were originally based on the following:
- - software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
-
- Aside from contributions to the Apache XMLBeans project, this
- software also includes:
-
- - one or more source files from the Apache Xerces-J and Apache Axis
- products, Copyright (c) 1999-2003 Apache Software Foundation
-
- - W3C XML Schema documents Copyright 2001-2003 (c) World Wide Web
- Consortium (Massachusetts Institute of Technology, European Research
- Consortium for Informatics and Mathematics, Keio University)
-
- - resolver.jar from Apache Xml Commons project,
- Copyright (c) 2001-2003 Apache Software Foundation
-
- - Piccolo XML Parser for Java from http://piccolo.sourceforge.net/,
- Copyright 2002 Yuval Oren under the terms of the Apache Software License 2.0
-
- - JSR-173 Streaming API for XML from http://sourceforge.net/projects/xmlpullparser/,
- Copyright 2005 BEA under the terms of the Apache Software License 2.0
-
-=========================================================================================
-Apache Axis2 Notice: (axis2-*, mex-1.5.1-impl)
-
-Portions Copyright 2006 International Business Machines Corp.
-Portions Copyright 2005-2007 WSO2, Inc.
-
-This product also includes schemas and specification developed by:
-- the W3C consortium (http://www.w3c.org)
-
-This product also includes WS-* schemas developed by International
-Business Machines Corporation, Microsoft Corporation, BEA Systems,
-TIBCO Software, SAP AG, Sonic Software, and VeriSign
-
-This product also includes a WSDL developed by salesforce.com
-- Copyright 1999-2006 salesforce.com, inc.
-Portions of the included xmlbeans library were originally based on the following:
-- software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
-
-====================================================================================
-Apache Derby Notice:
-
-Portions of Derby were originally developed by
-International Business Machines Corporation and are
-licensed to the Apache Software Foundation under the
-"Software Grant and Corporate Contribution License Agreement",
-informally known as the "Derby CLA".
-The following copyright notice(s) were affixed to portions of the code
-with which this file is now or was at one time distributed
-and are placed here unaltered.
-
-(C) Copyright 1997,2004 International Business Machines Corporation. All rights reserved.
-
-(C) Copyright IBM Corp. 2003.
-
-=======================
-
-The portion of the functionTests under 'nist' was originally
-developed by the National Institute of Standards and Technology (NIST),
-an agency of the United States Department of Commerce, and adapted by
-International Business Machines Corporation in accordance with the NIST
-Software Acknowledgment and Redistribution document at
-http://www.itl.nist.gov/div897/ctg/sql_form.htm
-
-========================
-
-The JDBC apis for small devices and JDBC3 (under java/stubs/jsr169 and
-java/stubs/jdbc3) were produced by trimming sources supplied by the
-Apache Harmony project. In addition, the Harmony SerialBlob and
-SerialClob implementations are used. The following notice covers the Harmony sources:
-
-Portions of Harmony were originally developed by
-Intel Corporation and are licensed to the Apache Software
-Foundation under the "Software Grant and Corporate Contribution
-License Agreement", informally known as the "Intel Harmony CLA".
-
-=============================================================================
-Apache Woden Notice:
-
- This product also includes software developed by :
-
- - IBM Corporation (http://www.ibm.com),
- WSDL4J was the initial code contribution for the Apache Woden
- project and some of the WSDL4J design and code has been reused.
- - The W3C Consortium (http://www.w3c.org),
- Common W3C XML Schema and DTD files are packaged with Apache Woden.
-
- Please read the different LICENSE files present in the root directory of
- this distribution.
-
-=========================================================================
-Woodstox Notice:
-
-This product includes software developed by the Woodstox Project
-(http://woodstox.codehaus.org/)
-
-This product currently only contains code developed by authors
-of specific components, as identified by the source code files.
-
-Since product implements StAX API, it has dependencies to StAX API
-classes.
-
-For additional credits (generally to people who reported problems)
-see CREDITS file.
-
-===========================================================================
-Apache xml-commons xml-apis Notice:
-
- Portions of this software were originally based on the following:
- - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
- - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
- - software copyright (c) 2000 World Wide Web Consortium, http://www.w3.org
-
-================================================================================================
-Apache Xalan Notice:
-
-Portions of this software was originally based on the following:
- - software copyright (c) 1999-2002, Lotus Development Corporation., http://www.lotus.com.
- - software copyright (c) 2001-2002, Sun Microsystems., http://www.sun.com.
- - software copyright (c) 2003, IBM Corporation., http://www.ibm.com.
- - voluntary contributions made by Ovidiu Predescu (ovidiu@cup.hp.com) on behalf of the
- Apache Software Foundation and was originally developed at Hewlett Packard Company.
-================================================================================================
-Apache OpenJPA Notice:
-
-OpenJPA includes software developed by the SERP project
-Copyright (c) 2002-2006, A. Abram White. All rights reserved.
-
-OpenJPA includes the persistence and orm schemas from the JPA specifications.
-Copyright 2005-2009 Sun Microsystems, Inc. All rights reserved.
-OpenJPA elects to include this software in this distribution under the
-CDDL license. You can obtain a copy of the License at:
- https://glassfish.dev.java.net/public/CDDL+GPL.html
-The source code is available at:
- https://glassfish.dev.java.net/source/browse/glassfish/
-
-OpenJPA includes software written by Miroslav Nachev
-OpenJPA uses test code written by Charles Tillman.
-================================================================================================
-Apache XmlSchema Notice:
-
-Portions Copyright 2006 International Business Machines Corp.
-================================================================================================
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/war/README
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diff --git a/modules/distribution/airavata-server/src/main/resources/war/README b/modules/distribution/airavata-server/src/main/resources/war/README
deleted file mode 100644
index 3c86da2..0000000
--- a/modules/distribution/airavata-server/src/main/resources/war/README
+++ /dev/null
@@ -1,121 +0,0 @@
-Apache Airavata Server - README.txt
-Licensed under Apache License 2.0 - http://www.apache.org/licenses/LICENSE-2.0
---------------------------------------------------------------------------------
-
-About
-=====
-Apache Airavata, a software framework to executing and managing computational jobs on
-distributed computing resources including local clusters, supercomputers, national grids,
-academic and commercial clouds. Airavata can be used as individual components or
-as an integrated solution to build science gateways or general-purpose distributed
-application and workflow management systems. Users can use Airavata back end services
-and build gadgets to deploy in open social containers such as Apache Rave and modify them
-to suit their needs. Airavata builds on general concepts of service oriented computing,
-distributed messaging, and workflow composition and orchestration.
-
-This distribution allows you to run a standalone Airavata Server which includes all the
-airavata services shipped with a default derby database as the backend registry.
-
-Release Notes
-=============
-0.11 is the ninth release of Airavata (skipped 0.1-INCUBATNG). This release focuses bug fixes and GSISSH library for beta testing. For detailed tasks list, please see RELEASE_NOTES.
-
-Building from source
-====================
-For brief installation instructions, see INSTALL
-For detailed installation and further instructions refer http://airavata.apache.org/ - Documentation section in left hand panel. Step by step with proper documentation are provided.
-
-Known Issues in This Release
-============================
-This is the base release and is focused on a good foundation and less on features. This
-version is not recommended for production usage.
-
-Airavata Binary Distribution Directory Structure
-================================================
-
- AIRAVATA_HOME
- ├── bin
- │ ├── database_scripts <dir>
- │ ├── airavata-server.bat
- │ ├── airavata-server.properties
- │ ├── airavata-server.sh
- │ ├── authenticators.xml
- │ ├── axis2.xml
- │ ├── derby.sh
- │ ├── host.xml
- │ ├── log4j.properties
- │ ├── logo.txt
- │ ├── setenv.bat
- │ ├── setenv.sh
- │ └── startNetworkServer
- ├── lib <dir>
- ├── repository
- │ ├── modules
- │ └── services
- ├── samples
- │ ├── workflows <dir>
- │ ├── echo_out.sh
- │ └── echo.sh
- ├── INSTALL
- ├── LICENSE
- ├── NOTICE
- └── README
-
-
-How to test and run samples
-===========================
-* If you built Airavata from source, and if you see "BUILD SUCCESS", then the test cases should have passes.
-* The test cases are beyond unit level, they startup embedded services and run through basic workflow use cases.
-* To walk through Airavata features, follow "Airavata in Five Minutes" tutorial at http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
-* For intermediate level Airavata features, follow "Airavata in Ten Minutes" tutorial at http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
-* For advanced use cases, please contact mailing lists - http://airavata.apache.org/community/mailing-lists.html
-
-Description of Directory Structure
-==================================
- - bin
- This contains all the configuration files & the executable scripts to run the Airavata Server (Axis2 server
- with Airavata services which include messageBroker and messageBox with GFac Axis2 services), & a standalone Apache Derby server.
-
- - bin - database_scripts
- Contains the database scripts which are used to create tables for messagebox and messagebroker services
-
- - samples
- This contains sample workflow to try out & sample application scripts.
-
- - lib
- This contains all the libraries required to run the airavata server and/or derby server.
-
- - repository - services
- Contains deployed services in Axis2 runtime.
-
- - README
- This document.
-
- - INSTALL
- This document will contain information on installing Apache-Airavata.
-
-
-Other Available Distributions
-=============================
-
-Server Distributions
---------------------
-* Airavata Server
- The Airavata Server binary distribution allows you to run a standalone Airavata Server which includes all the airavata services
- shipped with a default derby database as the backend registry. For stable purposes, a mysql configuration is recommended.
-
-* Airavata Server Web Application
- This is similar package as the Airavata Server but is distributed as the server Web Application archive.
- This war is compatible with Apache Tomcat application server. The war bundles all airavata services
- enabled by defualt to startup a derby database as the backend registry. For stable purposes, a mysql configuration is recommended.
-
-Client Distributions
---------------------
-* Airavata XBaya
- The Airavata XBaya distribution is a client GUI application with features to register applications as web services, construct workflows,
- execute and monitor workflows and browse the generated results from the airavata registry.
-
-* Airavata XBaya JNLP
- The Airavata XBaya JNLP distribution is the simular GUI distribution but prepackeged to be ready to be deployed to
- a web server as a web start application. The GUI provides features to register applications as web services, construct workflows,
- execute and monitor workflows and browse the generated results from the airavata registry.
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/xbaya-gui/pom.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/xbaya-gui/pom.xml b/modules/distribution/xbaya-gui/pom.xml
index 6933597..e3e185f 100644
--- a/modules/distribution/xbaya-gui/pom.xml
+++ b/modules/distribution/xbaya-gui/pom.xml
@@ -48,11 +48,31 @@
</execution>
</executions>
</plugin>
- <!--plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-dependency-plugin</artifactId>
- <version>2.4</version> <inherited>false</inherited> <executions> <execution> <id>unpack-axis2</id> <phase>package</phase>
- <goals> <goal>unpack</goal> </goals> <configuration> <artifactItems> <artifactItem> <groupId>org.apache.axis2</groupId> <artifactId>axis2-webapp</artifactId>
- <version>${axis2.version}</version> <type>war</type> <overWrite>true</overWrite> <outputDirectory>target/axis2-${axis2.version}</outputDirectory>
- </artifactItem> </artifactItems> </configuration> </execution> </executions> </plugin -->
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-dependency-plugin</artifactId>
+ <version>2.8</version>
+ <executions>
+ <execution>
+ <id>unpack</id>
+ <phase>compile</phase>
+ <goals>
+ <goal>unpack</goal>
+ </goals>
+ <configuration>
+ <artifactItems>
+ <artifactItem>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-client-configuration</artifactId>
+ <version>${project.version}</version>
+ <type>jar</type>
+ </artifactItem>
+ </artifactItems>
+ <outputDirectory>${project.build.directory}/conf</outputDirectory>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml b/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml
index a143ef7..3f16978 100644
--- a/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml
+++ b/modules/distribution/xbaya-gui/src/main/assembly/bin-assembly.xml
@@ -64,11 +64,11 @@
<include>*.sh</include>
</includes>
</fileSet>
- <fileSet>
- <directory>src/main/resources/conf</directory>
+ <fileSet>
+ <directory>${project.build.directory}/</directory>
<outputDirectory>bin</outputDirectory>
- <includes>
- <include>**/*</include>
+ <includes>
+ <include>*.properties</include>
</includes>
</fileSet>
<fileSet>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/xbaya-gui/src/main/resources/conf/airavata-client.properties
----------------------------------------------------------------------
diff --git a/modules/distribution/xbaya-gui/src/main/resources/conf/airavata-client.properties b/modules/distribution/xbaya-gui/src/main/resources/conf/airavata-client.properties
deleted file mode 100644
index d1e59e4..0000000
--- a/modules/distribution/xbaya-gui/src/main/resources/conf/airavata-client.properties
+++ /dev/null
@@ -1,66 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-#
-# This properties file provides configuration for Airavata Clients:
-# XBaya and Airavata API
-#
-###########################################################################
-
-###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
-
-#class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
-
-###---------------------REGISTRY API IMPLEMENTATION - CUSTOM SETTINGS----------------------###
-
-#for mysql [AiravataJPARegistry]
-#registry.jdbc.driver=com.mysql.jdbc.Driver
-#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
-
-#for derby [AiravataJPARegistry]
-registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
-registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
-registry.jdbc.user=airavata
-registry.jdbc.password=airavata
-start.derby.server.mode=true
-
-default.registry.user=admin
-default.registry.password=admin
-default.registry.password.hash.method=SHA
-default.registry.gateway=default
-
-#for xbaya
-xbaya.registry.user=admin
-xbaya.registry.url=http://localhost:8080/airavata/services/registry
-xbaya.default.gateway=default
-
-trust.store=aiaravata.jks
-trust.store.password=airavata
-
-#user defined registry accessor classes
-#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties
----------------------------------------------------------------------
diff --git a/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties b/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties
deleted file mode 100644
index ee40d6f..0000000
--- a/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties
+++ /dev/null
@@ -1,40 +0,0 @@
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-# Set root category priority to INFO and its only appender to CONSOLE.
-log4j.rootCategory=INFO, CONSOLE,LOGFILE
-log4j.rootLogger=INFO, CONSOLE, LOGFILE
-
-# Set the enterprise logger priority to FATAL
-log4j.logger.org.apache.axis2.enterprise=FATAL
-log4j.logger.de.hunsicker.jalopy.io=FATAL
-log4j.logger.httpclient.wire.header=FATAL
-log4j.logger.org.apache.commons.httpclient=FATAL
-
-# CONSOLE is set to be a ConsoleAppender using a PatternLayout.
-log4j.appender.CONSOLE=org.apache.log4j.ConsoleAppender
-log4j.appender.CONSOLE.layout=org.apache.log4j.PatternLayout
-log4j.appender.CONSOLE.layout.ConversionPattern=[%p] %m%n
-
-# LOGFILE is set to be a File appender using a PatternLayout.
-log4j.appender.LOGFILE=org.apache.log4j.FileAppender
-log4j.appender.LOGFILE.File=../../bin/axis2.log
-log4j.appender.LOGFILE.Append=true
-log4j.appender.LOGFILE.layout=org.apache.log4j.PatternLayout
-log4j.appender.LOGFILE.layout.ConversionPattern=%d [%t] %-5p %c %x - %m%n
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/orchestrator/orchestrator-client-sdks/pom.xml
----------------------------------------------------------------------
diff --git a/modules/orchestrator/orchestrator-client-sdks/pom.xml b/modules/orchestrator/orchestrator-client-sdks/pom.xml
index 0888556..78945ed 100644
--- a/modules/orchestrator/orchestrator-client-sdks/pom.xml
+++ b/modules/orchestrator/orchestrator-client-sdks/pom.xml
@@ -61,6 +61,11 @@
<artifactId>airavata-model-utils</artifactId>
<version>${project.version}</version>
</dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-client-configuration</artifactId>
+ <version>${project.version}</version>
+ </dependency>
</dependencies>
<properties>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/orchestrator/orchestrator-client-sdks/src/main/resources/airavata-client.properties
----------------------------------------------------------------------
diff --git a/modules/orchestrator/orchestrator-client-sdks/src/main/resources/airavata-client.properties b/modules/orchestrator/orchestrator-client-sdks/src/main/resources/airavata-client.properties
deleted file mode 100644
index 2a463b1..0000000
--- a/modules/orchestrator/orchestrator-client-sdks/src/main/resources/airavata-client.properties
+++ /dev/null
@@ -1,77 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-#
-# This properties file provides configuration for Airavata Clients:
-# XBaya and Airavata API
-#
-###########################################################################
-
-###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
-
-class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
-
-###---------------------REGISTRY API IMPLEMENTATION - CUSTOM SETTINGS----------------------###
-
-########################Registry JPA Implementation Settings########################
-#for mysql [AiravataJPARegistry]
-#registry.jdbc.driver=com.mysql.jdbc.Driver
-#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
-
-#for derby [AiravataJPARegistry]
-registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
-registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
-registry.jdbc.user=airavata
-registry.jdbc.password=airavata
-start.derby.server.mode=true
-
-
-validationQuery=SELECT 1 from CONFIGURATION
-jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
-defauly.registry.user=admin
-default.registry.password=admin
-default.registry.password.hash.method=SHA
-default.registry.gateway=default
-
-#user defined registry accessor classes
-#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-
-########################Registry Rest Implementation Settings########################
-
-trust.store=aiaravata.jks
-trust.store.password=airavata
-
-#####################################################################################
-
-#for xbaya
-xbaya.registry.user=admin
-xbaya.registry.url=http://localhost:8080/airavata/services/registry
-xbaya.default.gateway=default
-
-
-
-
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/registry/airavata-jpa-registry/pom.xml
----------------------------------------------------------------------
diff --git a/modules/registry/airavata-jpa-registry/pom.xml b/modules/registry/airavata-jpa-registry/pom.xml
index 751ba6d..fdca5f0 100644
--- a/modules/registry/airavata-jpa-registry/pom.xml
+++ b/modules/registry/airavata-jpa-registry/pom.xml
@@ -229,6 +229,20 @@
<!--</dependency>-->
<!--</dependencies>-->
<!--</plugin>-->
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-surefire-plugin</artifactId>
+ <version>${surefire.version}</version>
+ <configuration>
+ <failIfNoTests>false</failIfNoTests>
+ <skipTests>${skipTests}</skipTests>
+ <workingDirectory>${project.build.testOutputDirectory}</workingDirectory>
+ <excludes>
+ <exclude>**/WorkflowNodeDetailResourceTest.java</exclude>
+ <exclude>**/TaskDetailResourceTest.java</exclude>
+ </excludes>
+ </configuration>
+ </plugin>
</plugins>
</build>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/server/pom.xml
----------------------------------------------------------------------
diff --git a/modules/server/pom.xml b/modules/server/pom.xml
index a2cfdee..784cec5 100644
--- a/modules/server/pom.xml
+++ b/modules/server/pom.xml
@@ -50,6 +50,11 @@
<artifactId>airavata-api-server</artifactId>
<version>${project.version}</version>
</dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-server-configuration</artifactId>
+ <version>${project.version}</version>
+ </dependency>
</dependencies>
<build>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/server/src/main/resources/airavata-server.properties
----------------------------------------------------------------------
diff --git a/modules/server/src/main/resources/airavata-server.properties b/modules/server/src/main/resources/airavata-server.properties
deleted file mode 100644
index 35de79c..0000000
--- a/modules/server/src/main/resources/airavata-server.properties
+++ /dev/null
@@ -1,277 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-#
-# This properties file provides configuration for all Airavata Services:
-# Registry, Workflow Interpreter, GFac, Message Broker, Message Box
-#
-###########################################################################
-
-###########################################################################
-# Airavata Embedded-Tomcat Server Configuration
-###########################################################################
-# By default, tomcat runs on port 80. If the port is changed, it will be
-# have to be specified with port properties. This will be picked up by
-# the registry service to register the service end-points.
-
-port=8080
-
-# Axis2 server automatically picks up IP address from axis configuration,
-# but some DHCP enables machines do not report correct ip addresses,
-# in which case, the IP address can be manually specified.
-
-#ip=192.2.33.12
-
-
-#This property will enable https and stops http, during the url registration, https urls will be stored and
-# http urls will not get registered, because currently airavata supports only one url for each service
-#enable.https=false
-#system properties used by services to register service URLs
-system.gateway=default
-system.user=admin
-system.password=admin
-airavata.server.url=http://localhost:8080/airavata/services/registry
-
-###########################################################################
-# Airavata Registry Configuration
-###########################################################################
-#for derby [AiravataJPARegistry]
-registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
-registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
-# MySql database configuration
-#registry.jdbc.driver=com.mysql.jdbc.Driver
-#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
-registry.jdbc.user=airavata
-registry.jdbc.password=airavata
-start.derby.server.mode=true
-validationQuery=SELECT 1 from CONFIGURATION
-jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
-# Properties to setup registry service
-default.registry.user=admin
-default.registry.password=admin
-default.registry.password.hash.method=SHA
-default.registry.gateway=default
-#for rest [RegistryClient]
-#registry.jdbc.url=http://localhost:9080/airavata-services
-
-#user defined registry accessor classes
-#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-
-############################################################ ###############
-# Airavata Workflow Interpreter Configurations
-###########################################################################
-
-runInThread=true
-provenance=true
-provenanceWriterThreadPoolSize=20
-gfac.embedded=true
-
-#
-# Security Configuration used by Airavata Generic Factory Service
-# to interact with Computational Resources.
-#
-
-###########################################################################
-# Airavata GFac MyProxy GSI credentials to access Grid Resources.
-###########################################################################
-
-myproxy.server=myproxy.teragrid.org
-myproxy.user=ogce
-myproxy.pass=
-myproxy.life=3600
-# XSEDE Trusted certificates can be downloaded from https://software.xsede.org/security/xsede-certs.tar.gz
-trusted.cert.location=/Users/lahirugunathilake/Downloads/certificates
-# SSH PKI key pair or ssh password can be used SSH based authentication is used.
-# if user specify both password authentication gets the higher preference
-
-################# ---------- For ssh key pair authentication ------------------- ################
-#public.ssh.key=/path to public key for ssh
-#ssh.username=username for ssh connection
-#private.ssh.key=/path to private key file for ssh
-#ssh.keypass=passphrase for the private key
-
-
-################# ---------- For ssh key pair authentication ------------------- ################
-#ssh.username=username for ssh connection
-#ssh.password=Password for ssh connection
-
-
-
-###########################################################################
-# Airavata Message Broker Basic Configurations.
-# the Advanced section provides detailed custom configuration properties.
-###########################################################################
-
-# Default derby database configuration
-broker.jdbc.driver=org.apache.derby.jdbc.EmbeddedDriver
-broker.jdbc.url=jdbc:derby:wsmg;create=true;user=airavata;password=airavata
-
-# Note: This database will only be used if 'broker.storage.type=persistent'
-# is set in advanced properties below.
-# MySql database configuration
-#broker.jdbc.driver=com.mysql.jdbc.Driver
-#broker.jdbc.url=jdbc:mysql://localhost:3306/wsmg?user=airavata&password=airavata
-
-###########################################################################
-# Airavata Message Box Basic Configurations,
-# the Advanced section provides detailed custom configuration properties.
-###########################################################################
-
-# Default derby database
-msgBox.jdbc.driver=org.apache.derby.jdbc.EmbeddedDriver
-msgBox.jdbc.url=jdbc:derby:wsmg;create=true;user=airavata;password=airavata
-
-# MySql database configuration
-#msgBox.jdbc.driver=com.mysql.jdbc.Driver
-#msgBox.jdbc.url=jdbc:mysql://localhost:3306/wsmg?user=airavata&password=airavata
-
-###########################################################################
-# Advance configuration to change service implementations
-###########################################################################
-
-#Update the server context root path if airavata server is deployed under a different context root other than axis2
-server.context-root=airavata-server
-
-#
-# Class which implemented HostScheduler interface. It will determine the which host to submit the request
-#
-host.scheduler=org.apache.airavata.gfac.scheduler.impl.SimpleHostScheduler
-
-#
-# Data Service Plugins classes
-#
-datachain.classes= org.apache.airavata.core.gfac.extension.data.RegistryDataService
-
-#
-# Pre execution Plugins classes. For example, GridFTP Input Staging
-#
-prechain.classes= org.apache.airavata.core.gfac.extension.pre.GridFtpInputStaging
-prechain.classes= org.apache.airavata.core.gfac.extension.pre.HttpInputStaging
-
-#
-# Post execution Plugins classes. For example, GridFTP Output Staging
-#
-postchain.classes= org.apache.airavata.core.gfac.extension.post.GridFtpOutputStaging
-postchain.classes= org.apache.airavata.core.gfac.extension.post.OutputRegister
-
-#
-# Advanced Message Broker Configurations
-#
-
-#socket time out in milliseconds for sending messages. (defaults is 20000)
-broker.socket.timeout=60000
-
-broker.storage.type=persistent
-#broker.storage.type=memory
-
-#specifies wether delivery component should be started or not.
-broker.start.delivery.thread=true
-
-#fixed thread pool based delivery
-#broker.delivery.method=pcrew
-
-#dynamic thread pool based delivery
-#broker.delivery.method=parallel
-
-#single thread delivery
-broker.delivery.method=serial
-
-#number of message delivery failures before a url become black listed (default is 2)
-#broker.msg.delivery.retries=2
-
-#time period (in seconds) a url will be kept blacklisted (default is 5 seconds)
-#consumer.expiration.time.gap=5
-
-#maximum number of messages to be send to a one consumer/url at time.
-#applicable if 'broker.delivery.method' is 'pcrew' . (default is 10)
-
-#sending.batch.size=10
-
-#size of the thread pool. only applicable if 'broker.delivery.method' is 'pcrew'. (default is 4)
-#sending.thread.pool.size=4
-
-#
-# Advanced Message Box Configurations
-#
-msgBox.usedatabase=true
-messagePreservationDays=2
-messagePreservationHours=0
-messagePreservationMinutes=0
-messagePerservationIntervalDays=0
-messagePerservationIntervalHours=1
-messagePerservationIntervalMinutes=0
-
-###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
-
-class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
-
-###########################################################################
-# AMQP Notification Configuration
-###########################################################################
-amqp.notification.enable=1
-
-amqp.broker.host=localhost
-amqp.broker.port=5672
-amqp.broker.username=guest
-amqp.broker.password=guest
-
-amqp.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPSenderImpl
-amqp.topic.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPTopicSenderImpl
-amqp.broadcast.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPBroadcastSenderImpl
-
-###---------------------------Computational Middleware Configurations---------------------------###
-
-#enable.application.job.status.history=true
-#http://localhost:8080/axis2/services/RegistryService?wsdl
-registry.service.wsdl=http://localhost:${port}/${server.context-root}/services/RegistryService?wsdl
-
-# If false, disables two phase commit when submitting jobs
-TwoPhase=true
-
-###---------------------------Monitoring module Configurations---------------------------###
-#This will be the primary monitoring tool which runs in airavata, in future there will be multiple monitoring
-#mechanisms and one would be able to start a monitor
-monitors=org.apache.airavata.job.monitor.impl.pull.qstat.QstatMonitor,org.apache.airavata.job.monitor.impl.push.amqp.AMQPMonitor
-#This is the amqp related configuration and this lists down the Rabbitmq host, this is an xsede specific configuration
-amqp.hosts=info1.dyn.teragrid.org,info2.dyn.teragrid.org
-proxy.file.path=/Users/lahirugunathilake/Downloads/x509up_u503876
-connection.name=xsede_private
-
-###---------------------------Orchestrator module Configurations---------------------------###
-job.submitter=org.apache.airavata.orchestrator.core.impl.EmbeddedGFACJobSubmitter
-job.validator=org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator
-submitter.interval=10000
-threadpool.size=10
-start.submitter=true
-embedded.mode=true
-enable.validation=false
-orchestrator=org.apache.airavata.orchestrator.server.OrchestratorServer
-
-###---------------------------API Server module Configurations---------------------------###
-apiserver=org.apache.airavata.api.server.AiravataAPIServer
-
-servers=apiserver,orchestrator
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/xbaya-gui/pom.xml
----------------------------------------------------------------------
diff --git a/modules/xbaya-gui/pom.xml b/modules/xbaya-gui/pom.xml
index a3d11e2..dadbd50 100644
--- a/modules/xbaya-gui/pom.xml
+++ b/modules/xbaya-gui/pom.xml
@@ -325,5 +325,10 @@
<artifactId>httpcore</artifactId>
<version>4.3</version>
</dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-client-configuration</artifactId>
+ <version>${project.version}</version>
+ </dependency>
</dependencies>
</project>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/xbaya-gui/src/main/resources/airavata-client.properties
----------------------------------------------------------------------
diff --git a/modules/xbaya-gui/src/main/resources/airavata-client.properties b/modules/xbaya-gui/src/main/resources/airavata-client.properties
deleted file mode 100644
index 012bd05..0000000
--- a/modules/xbaya-gui/src/main/resources/airavata-client.properties
+++ /dev/null
@@ -1,80 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-#
-# This properties file provides configuration for Airavata Clients:
-# XBaya and Airavata API
-#
-###########################################################################
-
-###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
-
-#class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
-
-###---------------------REGISTRY API IMPLEMENTATION - CUSTOM SETTINGS----------------------###
-
-#for mysql [AiravataJPARegistry]
-#registry.jdbc.driver=com.mysql.jdbc.Driver
-#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
-
-#for derby [AiravataJPARegistry]
-registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
-registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
-registry.jdbc.user=airavata
-registry.jdbc.password=airavata
-start.derby.server.mode=true
-validationQuery=SELECT 1
-default.registry.user=admin
-default.registry.password=admin
-default.registry.password.hash.method=SHA
-default.registry.gateway=default
-
-#for xbaya
-xbaya.registry.user=admin
-xbaya.registry.url=http://localhost:8080/airavata/services/registry
-xbaya.default.gateway=default
-
-
-trust.store=aiaravata.jks
-trust.store.password=airavata
-
-registry.service.wsdl=http://localhost:${port}/axis2/services/RegistryService?wsdl
-
-#user defined registry accessor classes
-#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-
-
-############### ------------ FOR AMBER ---------------------- ####################
-#Host name (resource) where you want to run amber job
-host.name=bigred2.uits.iu.edu
-ssh.username=cgateway
-ssh.password=the science gateways group
-#public.ssh.key=/path to public key for ssh
-#ssh.username=username for ssh connection
-#private.ssh.key=/path to private key file for ssh
-#ssh.keypass=passphrase for the private key
-
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/pom.xml
----------------------------------------------------------------------
diff --git a/pom.xml b/pom.xml
index 91ae87a..1890461 100644
--- a/pom.xml
+++ b/pom.xml
@@ -473,6 +473,7 @@
<module>tools</module>
<!--module>samples</module-->
<module>modules/server</module>
+ <module>modules/configuration</module>
<module>modules/test-suite</module>
<module>modules/distribution</module>
<module>modules/integration-tests</module>
[5/5] git commit: https://issues.apache.org/jira/browse/AIRAVATA-1121
+ disabling some test cases that fail due to unsupported workflow for this
version
Posted by sa...@apache.org.
https://issues.apache.org/jira/browse/AIRAVATA-1121 + disabling some test cases that fail due to unsupported workflow for this version
Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/a2dcc366
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/a2dcc366
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/a2dcc366
Branch: refs/heads/master
Commit: a2dcc366b97ccf2b31579f5f97d5c0c37e2726d4
Parents: 1301e2a
Author: Saminda Wijeratne <sa...@gmail.com>
Authored: Fri Apr 4 02:02:31 2014 -0700
Committer: Saminda Wijeratne <sa...@gmail.com>
Committed: Fri Apr 4 02:02:31 2014 -0700
----------------------------------------------------------------------
.../java-client-samples/pom.xml | 5 +
.../main/resources/airavata-client.properties | 77 -
modules/airavata-client/pom.xml | 5 +
.../main/resources/airavata-client.properties | 76 -
.../common/utils/ApplicationSettingsTest.java | 6 +-
.../test/resources/airavata-server.properties | 118 +-
modules/configuration/client/pom.xml | 24 +
.../main/resources/airavata-client.properties | 77 +
.../client/src/main/resources/log4j.properties | 40 +
modules/configuration/pom.xml | 40 +
modules/configuration/server/pom.xml | 24 +
.../server/src/main/resources/PBSTemplate.xslt | 77 +
.../server/src/main/resources/SGETemplate.xslt | 79 +
.../src/main/resources/SLURMTemplate.xslt | 69 +
.../main/resources/airavata-server.properties | 283 +++
.../server/src/main/resources/airavata.jks | Bin 0 -> 501 bytes
.../server/src/main/resources/axis2.xml | 533 ++++
.../server/src/main/resources/gfac-config.xml | 101 +
.../server/src/main/resources/gsissh.properties | 26 +
.../server/src/main/resources/host.xml | 86 +
.../server/src/main/resources/log4j.properties | 41 +
modules/distribution/airavata-client/pom.xml | 30 +-
.../src/main/assembly/bin-assembly.xml | 8 +-
.../resources/conf/airavata-client.properties | 77 -
.../src/main/resources/conf/log4j.properties | 40 -
modules/distribution/airavata-server/pom.xml | 110 +-
.../src/main/assembly/bin-assembly.xml | 24 +-
.../src/main/resources/conf/PBSTemplate.xslt | 77 -
.../src/main/resources/conf/SGETemplate.xslt | 79 -
.../src/main/resources/conf/SLURMTemplate.xslt | 69 -
.../resources/conf/airavata-server.properties | 283 ---
.../src/main/resources/conf/airavata.jks | Bin 501 -> 0 bytes
.../src/main/resources/conf/axis2.xml | 533 ----
.../src/main/resources/conf/gfac-config.xml | 101 -
.../src/main/resources/conf/gsissh.properties | 26 -
.../src/main/resources/conf/host.xml | 86 -
.../src/main/resources/conf/log4j.properties | 41 -
.../src/main/resources/war/INSTALL | 55 -
.../src/main/resources/war/LICENSE | 2387 ------------------
.../src/main/resources/war/NOTICE | 163 --
.../src/main/resources/war/README | 121 -
modules/distribution/xbaya-gui/pom.xml | 30 +-
.../src/main/assembly/bin-assembly.xml | 8 +-
.../resources/conf/airavata-client.properties | 66 -
.../src/main/resources/conf/log4j.properties | 40 -
.../orchestrator-client-sdks/pom.xml | 5 +
.../main/resources/airavata-client.properties | 77 -
modules/registry/airavata-jpa-registry/pom.xml | 14 +
modules/server/pom.xml | 5 +
.../main/resources/airavata-server.properties | 277 --
modules/xbaya-gui/pom.xml | 5 +
.../main/resources/airavata-client.properties | 80 -
pom.xml | 1 +
53 files changed, 1705 insertions(+), 5000 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/airavata-api/airavata-client-sdks/java-client-samples/pom.xml
----------------------------------------------------------------------
diff --git a/airavata-api/airavata-client-sdks/java-client-samples/pom.xml b/airavata-api/airavata-client-sdks/java-client-samples/pom.xml
index 72050fd..fa4fa29 100644
--- a/airavata-api/airavata-client-sdks/java-client-samples/pom.xml
+++ b/airavata-api/airavata-client-sdks/java-client-samples/pom.xml
@@ -82,6 +82,11 @@
<artifactId>mysql-connector-java</artifactId>
<version>5.1.17</version>
</dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-client-configuration</artifactId>
+ <version>${project.version}</version>
+ </dependency>
</dependencies>
</project>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/airavata-api/airavata-client-sdks/java-client-samples/src/main/resources/airavata-client.properties
----------------------------------------------------------------------
diff --git a/airavata-api/airavata-client-sdks/java-client-samples/src/main/resources/airavata-client.properties b/airavata-api/airavata-client-sdks/java-client-samples/src/main/resources/airavata-client.properties
deleted file mode 100644
index 9786a1a..0000000
--- a/airavata-api/airavata-client-sdks/java-client-samples/src/main/resources/airavata-client.properties
+++ /dev/null
@@ -1,77 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-#
-# This properties file provides configuration for Airavata Clients:
-# XBaya and Airavata API
-#
-###########################################################################
-
-###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
-
-class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
-
-###---------------------REGISTRY API IMPLEMENTATION - CUSTOM SETTINGS----------------------###
-
-########################Registry JPA Implementation Settings########################
-#for mysql [AiravataJPARegistry]
-#registry.jdbc.driver=com.mysql.jdbc.Driver
-#registry.jdbc.url=jdbc:mysql://gw111.iu.xsede.org:3306/airavata
-
-#for derby [AiravataJPARegistry]
-registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
-registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
-registry.jdbc.user=airavata
-registry.jdbc.password=airavata12
-start.derby.server.mode=true
-
-
-validationQuery=SELECT 1 from CONFIGURATION
-jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
-defauly.registry.user=admin
-default.registry.password=admin
-default.registry.password.hash.method=SHA
-default.registry.gateway=default
-
-#user defined registry accessor classes
-#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-
-########################Registry Rest Implementation Settings########################
-
-trust.store=aiaravata.jks
-trust.store.password=airavata
-
-#####################################################################################
-
-#for xbaya
-xbaya.registry.user=admin
-xbaya.registry.url=http://localhost:8080/airavata/services/registry
-xbaya.default.gateway=default
-
-
-
-
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/airavata-client/pom.xml
----------------------------------------------------------------------
diff --git a/modules/airavata-client/pom.xml b/modules/airavata-client/pom.xml
index fc3dca3..c05ffff 100644
--- a/modules/airavata-client/pom.xml
+++ b/modules/airavata-client/pom.xml
@@ -58,6 +58,11 @@
<artifactId>jcr</artifactId>
<version>${jcr.version}</version>
</dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-client-configuration</artifactId>
+ <version>${project.version}</version>
+ </dependency>
</dependencies>
<build>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/airavata-client/src/main/resources/airavata-client.properties
----------------------------------------------------------------------
diff --git a/modules/airavata-client/src/main/resources/airavata-client.properties b/modules/airavata-client/src/main/resources/airavata-client.properties
deleted file mode 100644
index 3a83558..0000000
--- a/modules/airavata-client/src/main/resources/airavata-client.properties
+++ /dev/null
@@ -1,76 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-#
-# This properties file provides configuration for Airavata Clients:
-# XBaya and Airavata API
-#
-###########################################################################
-
-###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
-
-class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
-
-###---------------------REGISTRY API IMPLEMENTATION - CUSTOM SETTINGS----------------------###
-
-########################Registry JPA Implementation Settings########################
-#for mysql [AiravataJPARegistry]
-#registry.jdbc.driver=com.mysql.jdbc.Driver
-#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
-
-#for derby [AiravataJPARegistry]
-registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
-registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
-registry.jdbc.user=airavata
-registry.jdbc.password=airavata
-start.derby.server.mode=true
-
-
-validationQuery=SELECT 1
-defauly.registry.user=admin
-default.registry.password=admin
-default.registry.password.hash.method=SHA
-default.registry.gateway=default
-
-#user defined registry accessor classes
-#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-
-########################Registry Rest Implementation Settings########################
-
-trust.store=aiaravata.jks
-trust.store.password=airavata
-
-#####################################################################################
-
-#for xbaya
-xbaya.registry.user=admin
-xbaya.registry.url=http://localhost:8080/airavata/services/registry
-xbaya.default.gateway=default
-
-
-
-
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/commons/utils/src/test/java/org/apache/airavata/common/utils/ApplicationSettingsTest.java
----------------------------------------------------------------------
diff --git a/modules/commons/utils/src/test/java/org/apache/airavata/common/utils/ApplicationSettingsTest.java b/modules/commons/utils/src/test/java/org/apache/airavata/common/utils/ApplicationSettingsTest.java
index 6813169..69f059b 100644
--- a/modules/commons/utils/src/test/java/org/apache/airavata/common/utils/ApplicationSettingsTest.java
+++ b/modules/commons/utils/src/test/java/org/apache/airavata/common/utils/ApplicationSettingsTest.java
@@ -41,15 +41,15 @@ public class ApplicationSettingsTest extends TestCase {
System.setProperty(AiravataUtils.EXECUTION_MODE, "SERVER");
String url = ApplicationSettings.getAbsoluteSetting("registry.service.wsdl");
- Assert.assertEquals("http://192.2.33.12:8080/airavata-server/services/RegistryService?wsdl", url);
+ Assert.assertEquals("http://localhost:8080/airavata-server/services/RegistryService?wsdl", url);
}
public void testGetAbsoluteSettingWithSpecialCharacters() throws Exception {
System.setProperty(AiravataUtils.EXECUTION_MODE, "SERVER");
- String url = ApplicationSettings.getAbsoluteSetting("registry.service.wsdl2");
- Assert.assertEquals("http://localhost:8080/airavata-server/services/RegistryService?wsdl", url);
+ String url = ApplicationSettings.getAbsoluteSetting("system.user");
+ Assert.assertEquals("admin", url);
}
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/commons/utils/src/test/resources/airavata-server.properties
----------------------------------------------------------------------
diff --git a/modules/commons/utils/src/test/resources/airavata-server.properties b/modules/commons/utils/src/test/resources/airavata-server.properties
old mode 100755
new mode 100644
index 1c2cc83..5557a10
--- a/modules/commons/utils/src/test/resources/airavata-server.properties
+++ b/modules/commons/utils/src/test/resources/airavata-server.properties
@@ -20,7 +20,7 @@
###########################################################################
#
-# This properties file provides configuration for all Airavata Services:
+# This properties file provides configuration for all Airavata Services:
# Registry, Workflow Interpreter, GFac, Message Broker, Message Box
#
###########################################################################
@@ -28,29 +28,31 @@
###########################################################################
# Airavata Embedded-Tomcat Server Configuration
###########################################################################
-# By default, tomcat runs on port 80. If the port is changed, it will be
-# have to be specified with port properties. This will be picked up by
+# By default, tomcat runs on port 80. If the port is changed, it will be
+# have to be specified with port properties. This will be picked up by
# the registry service to register the service end-points.
port=8080
-# Axis2 server automatically picks up IP address from axis configuration,
-# but some DHCP enables machines do not report correct ip addresses,
-# in which case, the IP address can be manually specified.
+# Axis2 server automatically picks up IP address from axis configuration,
+# but some DHCP enables machines do not report correct ip addresses,
+# in which case, the IP address can be manually specified.
-ip=192.2.33.12
+#ip=192.2.33.12
#This property will enable https and stops http, during the url registration, https urls will be stored and
# http urls will not get registered, because currently airavata supports only one url for each service
#enable.https=false
+#system properties used by services to register service URLs
+system.gateway=default
+system.user=admin
+system.password=admin
+airavata.server.url=http://localhost:8080/airavata/services/registry
###########################################################################
# Airavata Registry Configuration
###########################################################################
-system.gateway=default
-system.user=admin
-system.password=admin
#for derby [AiravataJPARegistry]
registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
@@ -60,12 +62,13 @@ registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=a
registry.jdbc.user=airavata
registry.jdbc.password=airavata
start.derby.server.mode=true
+validationQuery=SELECT 1 from CONFIGURATION
+jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
+# Properties to setup registry service
default.registry.user=admin
default.registry.password=admin
default.registry.password.hash.method=SHA
default.registry.gateway=default
-validationQuery=SELECT 1 from CONFIGURATION
-jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
#for rest [RegistryClient]
#registry.jdbc.url=http://localhost:9080/airavata-services
@@ -77,7 +80,7 @@ jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhi
#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-###########################################################################
+############################################################ ###############
# Airavata Workflow Interpreter Configurations
###########################################################################
@@ -96,16 +99,26 @@ gfac.embedded=true
###########################################################################
myproxy.server=myproxy.teragrid.org
-myproxy.user=username
-myproxy.pass=password
+myproxy.user=ogce
+myproxy.pass=
myproxy.life=3600
# XSEDE Trusted certificates can be downloaded from https://software.xsede.org/security/xsede-certs.tar.gz
-trusted.cert.location=/path/to/trusted/certificates
+trusted.cert.location=/Users/lahirugunathilake/Downloads/certificates
+# SSH PKI key pair or ssh password can be used SSH based authentication is used.
+# if user specify both password authentication gets the higher preference
+
+################# ---------- For ssh key pair authentication ------------------- ################
+#public.ssh.key=/path to public key for ssh
+#ssh.username=username for ssh connection
+#private.ssh.key=/path to private key file for ssh
+#ssh.keypass=passphrase for the private key
+
+
+################# ---------- For ssh key pair authentication ------------------- ################
+#ssh.username=username for ssh connection
+#ssh.password=Password for ssh connection
+
-# SSH PKI key pair is SSH based authentication is used.
-#ssh.key=/home/user/.ssh/id_rsa
-#ssh.keypass=
-#ssh.username=usernameAtHost
###########################################################################
# Airavata Message Broker Basic Configurations.
@@ -116,16 +129,16 @@ trusted.cert.location=/path/to/trusted/certificates
broker.jdbc.driver=org.apache.derby.jdbc.EmbeddedDriver
broker.jdbc.url=jdbc:derby:wsmg;create=true;user=airavata;password=airavata
-# Note: This database will only be used if 'broker.storage.type=persistent'
+# Note: This database will only be used if 'broker.storage.type=persistent'
# is set in advanced properties below.
# MySql database configuration
#broker.jdbc.driver=com.mysql.jdbc.Driver
#broker.jdbc.url=jdbc:mysql://localhost:3306/wsmg?user=airavata&password=airavata
###########################################################################
-# Airavata Message Box Basic Configurations,
+# Airavata Message Box Basic Configurations,
# the Advanced section provides detailed custom configuration properties.
-###########################################################################
+###########################################################################
# Default derby database
msgBox.jdbc.driver=org.apache.derby.jdbc.EmbeddedDriver
@@ -189,10 +202,10 @@ broker.delivery.method=serial
#number of message delivery failures before a url become black listed (default is 2)
#broker.msg.delivery.retries=2
-#time period (in seconds) a url will be kept blacklisted (default is 5 seconds)
-#consumer.expiration.time.gap=5
+#time period (in seconds) a url will be kept blacklisted (default is 5 seconds)
+#consumer.expiration.time.gap=5
-#maximum number of messages to be send to a one consumer/url at time.
+#maximum number of messages to be send to a one consumer/url at time.
#applicable if 'broker.delivery.method' is 'pcrew' . (default is 10)
#sending.batch.size=10
@@ -202,7 +215,7 @@ broker.delivery.method=serial
#
# Advanced Message Box Configurations
-#
+#
msgBox.usedatabase=true
messagePreservationDays=2
messagePreservationHours=0
@@ -216,8 +229,55 @@ messagePerservationIntervalMinutes=0
class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
+###########################################################################
+# AMQP Notification Configuration
+###########################################################################
+amqp.notification.enable=1
+
+amqp.broker.host=localhost
+amqp.broker.port=5672
+amqp.broker.username=guest
+amqp.broker.password=guest
+
+amqp.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPSenderImpl
+amqp.topic.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPTopicSenderImpl
+amqp.broadcast.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPBroadcastSenderImpl
+
###---------------------------Computational Middleware Configurations---------------------------###
#enable.application.job.status.history=true
-registry.service.wsdl=http://${ip}:${port}/airavata-server/services/RegistryService?wsdl
-registry.service.wsdl2=http://localhost:${port}/${server.context-root}/services/RegistryService?wsdl
+#http://localhost:8080/axis2/services/RegistryService?wsdl
+registry.service.wsdl=http://localhost:${port}/${server.context-root}/services/RegistryService?wsdl
+
+# If false, disables two phase commit when submitting jobs
+TwoPhase=true
+
+
+###---------------------------Monitoring module Configurations---------------------------###
+#This will be the primary monitoring tool which runs in airavata, in future there will be multiple monitoring
+#mechanisms and one would be able to start a monitor
+monitors=org.apache.airavata.job.monitor.impl.pull.qstat.QstatMonitor,org.apache.airavata.job.monitor.impl.LocalJobMonitor
+#,org.apache.airavata.job.monitor.impl.push.amqp.AMQPMonitor
+#This is the amqp related configuration and this lists down the Rabbitmq host, this is an xsede specific configuration
+amqp.hosts=info1.dyn.teragrid.org,info2.dyn.teragrid.org
+proxy.file.path=/Users/lahirugunathilake/Downloads/x509up_u503876
+connection.name=xsede_private
+
+
+###---------------------------Orchestrator module Configurations---------------------------###
+job.submitter=org.apache.airavata.orchestrator.core.impl.EmbeddedGFACJobSubmitter
+job.validator=org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator
+submitter.interval=10000
+threadpool.size=10
+start.submitter=true
+embedded.mode=true
+enable.validation=false
+orchestrator=org.apache.airavata.orchestrator.server.OrchestratorServer
+
+###---------------------------API Server module Configurations---------------------------###
+apiserver=org.apache.airavata.api.server.AiravataAPIServer
+
+###---------------------------Airavata Server Configurations---------------------------###
+servers=apiserver,orchestrator
+#shutdown.trategy=NONE
+shutdown.trategy=SELF_TERMINATE
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/client/pom.xml
----------------------------------------------------------------------
diff --git a/modules/configuration/client/pom.xml b/modules/configuration/client/pom.xml
new file mode 100644
index 0000000..e8b6ae7
--- /dev/null
+++ b/modules/configuration/client/pom.xml
@@ -0,0 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
+ the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
+ obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
+ in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
+ ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
+ the License. -->
+
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <parent>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata</artifactId>
+ <version>0.12-SNAPSHOT</version>
+ <relativePath>../pom.xml</relativePath>
+ </parent>
+
+ <modelVersion>4.0.0</modelVersion>
+ <artifactId>airavata-client-configuration</artifactId>
+ <name>Airavata Client Configuration</name>
+ <description>Airavata Client Configuration</description>
+ <packaging>jar</packaging>
+</project>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/client/src/main/resources/airavata-client.properties
----------------------------------------------------------------------
diff --git a/modules/configuration/client/src/main/resources/airavata-client.properties b/modules/configuration/client/src/main/resources/airavata-client.properties
new file mode 100644
index 0000000..2a463b1
--- /dev/null
+++ b/modules/configuration/client/src/main/resources/airavata-client.properties
@@ -0,0 +1,77 @@
+#
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+###########################################################################
+#
+# This properties file provides configuration for Airavata Clients:
+# XBaya and Airavata API
+#
+###########################################################################
+
+###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
+
+class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
+
+###---------------------REGISTRY API IMPLEMENTATION - CUSTOM SETTINGS----------------------###
+
+########################Registry JPA Implementation Settings########################
+#for mysql [AiravataJPARegistry]
+#registry.jdbc.driver=com.mysql.jdbc.Driver
+#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
+
+#for derby [AiravataJPARegistry]
+registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
+registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
+registry.jdbc.user=airavata
+registry.jdbc.password=airavata
+start.derby.server.mode=true
+
+
+validationQuery=SELECT 1 from CONFIGURATION
+jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
+defauly.registry.user=admin
+default.registry.password=admin
+default.registry.password.hash.method=SHA
+default.registry.gateway=default
+
+#user defined registry accessor classes
+#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+
+########################Registry Rest Implementation Settings########################
+
+trust.store=aiaravata.jks
+trust.store.password=airavata
+
+#####################################################################################
+
+#for xbaya
+xbaya.registry.user=admin
+xbaya.registry.url=http://localhost:8080/airavata/services/registry
+xbaya.default.gateway=default
+
+
+
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/client/src/main/resources/log4j.properties
----------------------------------------------------------------------
diff --git a/modules/configuration/client/src/main/resources/log4j.properties b/modules/configuration/client/src/main/resources/log4j.properties
new file mode 100644
index 0000000..ee40d6f
--- /dev/null
+++ b/modules/configuration/client/src/main/resources/log4j.properties
@@ -0,0 +1,40 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+# Set root category priority to INFO and its only appender to CONSOLE.
+log4j.rootCategory=INFO, CONSOLE,LOGFILE
+log4j.rootLogger=INFO, CONSOLE, LOGFILE
+
+# Set the enterprise logger priority to FATAL
+log4j.logger.org.apache.axis2.enterprise=FATAL
+log4j.logger.de.hunsicker.jalopy.io=FATAL
+log4j.logger.httpclient.wire.header=FATAL
+log4j.logger.org.apache.commons.httpclient=FATAL
+
+# CONSOLE is set to be a ConsoleAppender using a PatternLayout.
+log4j.appender.CONSOLE=org.apache.log4j.ConsoleAppender
+log4j.appender.CONSOLE.layout=org.apache.log4j.PatternLayout
+log4j.appender.CONSOLE.layout.ConversionPattern=[%p] %m%n
+
+# LOGFILE is set to be a File appender using a PatternLayout.
+log4j.appender.LOGFILE=org.apache.log4j.FileAppender
+log4j.appender.LOGFILE.File=../../bin/axis2.log
+log4j.appender.LOGFILE.Append=true
+log4j.appender.LOGFILE.layout=org.apache.log4j.PatternLayout
+log4j.appender.LOGFILE.layout.ConversionPattern=%d [%t] %-5p %c %x - %m%n
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/pom.xml
----------------------------------------------------------------------
diff --git a/modules/configuration/pom.xml b/modules/configuration/pom.xml
new file mode 100644
index 0000000..6f538c5
--- /dev/null
+++ b/modules/configuration/pom.xml
@@ -0,0 +1,40 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
+ the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
+ obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
+ in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
+ ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
+ the License. -->
+
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
+ <parent>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata</artifactId>
+ <version>0.12-SNAPSHOT</version>
+ <relativePath>../../pom.xml</relativePath>
+ </parent>
+
+ <modelVersion>4.0.0</modelVersion>
+ <artifactId>configuration</artifactId>
+ <name>Airavata Configuration</name>
+ <packaging>pom</packaging>
+ <url>http://airavata.apache.org/</url>
+ <profiles>
+ <profile>
+ <id>default</id>
+ <activation>
+ <activeByDefault>true</activeByDefault>
+ </activation>
+ <modules>
+ <module>server</module>
+ <module>client</module>
+ </modules>
+ </profile>
+ </profiles>
+ <properties>
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+ <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
+ </properties>
+</project>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/pom.xml
----------------------------------------------------------------------
diff --git a/modules/configuration/server/pom.xml b/modules/configuration/server/pom.xml
new file mode 100644
index 0000000..bcee5c7
--- /dev/null
+++ b/modules/configuration/server/pom.xml
@@ -0,0 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
+ the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
+ obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
+ in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
+ ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
+ the License. -->
+
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <parent>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata</artifactId>
+ <version>0.12-SNAPSHOT</version>
+ <relativePath>../pom.xml</relativePath>
+ </parent>
+
+ <modelVersion>4.0.0</modelVersion>
+ <artifactId>airavata-server-configuration</artifactId>
+ <name>Airavata Server Configuration</name>
+ <description>Airavata Server Configuration</description>
+ <packaging>jar</packaging>
+</project>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/PBSTemplate.xslt
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/PBSTemplate.xslt b/modules/configuration/server/src/main/resources/PBSTemplate.xslt
new file mode 100644
index 0000000..e4398e0
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/PBSTemplate.xslt
@@ -0,0 +1,77 @@
+<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
+ the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
+ obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
+ in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
+ ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
+ the License. -->
+<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:ns="http://airavata.apache.org/gsi/ssh/2012/12">
+<xsl:output method="text" />
+<xsl:template match="/ns:JobDescriptor">
+#! /bin/sh
+# <xsl:choose>
+ <xsl:when test="ns:shellName">
+##PBS -S <xsl:value-of select="ns:shellName"/>
+ </xsl:when></xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:queueName">
+#PBS -q <xsl:value-of select="ns:queueName"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:mailOptions">
+#PBS -m <xsl:value-of select="ns:mailOptions"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+<xsl:when test="ns:acountString">
+#PBS -A <xsl:value-of select="ns:acountString"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:maxWallTime">
+#PBS -l walltime=<xsl:value-of select="ns:maxWallTime"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:jobName">
+#PBS -N <xsl:value-of select="ns:jobName"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:standardOutFile">
+#PBS -o <xsl:value-of select="ns:standardOutFile"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:standardOutFile">
+#PBS -e <xsl:value-of select="ns:standardErrorFile"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="(ns:nodes) and (ns:processesPerNode)">
+#PBS -l nodes=<xsl:value-of select="ns:nodes"/>:ppn=<xsl:value-of select="ns:processesPerNode"/>
+<xsl:text>
</xsl:text>
+ </xsl:when>
+ </xsl:choose>
+<xsl:for-each select="ns:exports/ns:name">
+<xsl:value-of select="."/>=<xsl:value-of select="./@value"/><xsl:text>
</xsl:text>
+export<xsl:text> </xsl:text><xsl:value-of select="."/>
+<xsl:text>
</xsl:text>
+</xsl:for-each>
+<xsl:for-each select="ns:preJobCommands/ns:command">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+ </xsl:for-each>
+cd <xsl:text> </xsl:text><xsl:value-of select="ns:workingDirectory"/><xsl:text>
</xsl:text>
+ <xsl:choose><xsl:when test="ns:jobSubmitterCommand">
+<xsl:value-of select="ns:jobSubmitterCommand"/><xsl:text> </xsl:text></xsl:when></xsl:choose><xsl:value-of select="ns:executablePath"/><xsl:text> </xsl:text>
+<xsl:for-each select="ns:inputs/ns:input">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+ </xsl:for-each>
+<xsl:for-each select="ns:postJobCommands/ns:command">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+</xsl:for-each>
+
+</xsl:template>
+
+</xsl:stylesheet>
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/SGETemplate.xslt
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/SGETemplate.xslt b/modules/configuration/server/src/main/resources/SGETemplate.xslt
new file mode 100644
index 0000000..90fbf01
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/SGETemplate.xslt
@@ -0,0 +1,79 @@
+<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
+ the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
+ obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
+ in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
+ ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
+ the License. -->
+<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:ns="http://airavata.apache.org/gsi/ssh/2012/12">
+<xsl:output method="text" />
+<xsl:template match="/ns:JobDescriptor">
+#! /bin/sh
+# Grid Engine batch job script built by Apache Airavata
+# <xsl:choose>
+ <xsl:when test="ns:shellName">
+#$ -S <xsl:value-of select="ns:shellName"/>
+ </xsl:when></xsl:choose>
+#$ -V
+ <xsl:choose>
+ <xsl:when test="ns:queueName">
+#$ -q <xsl:value-of select="ns:queueName"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:mailOptions">
+#$ -m <xsl:value-of select="ns:mailOptions"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+<xsl:when test="ns:acountString">
+#$ -A <xsl:value-of select="ns:acountString"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:maxWallTime">
+#$ -l h_rt=<xsl:value-of select="ns:maxWallTime"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:jobName">
+#$ -N <xsl:value-of select="ns:jobName"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:standardOutFile">
+#$ -o <xsl:value-of select="ns:standardOutFile"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:standardOutFile">
+#$ -e <xsl:value-of select="ns:standardErrorFile"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="(ns:nodes) and (ns:processesPerNode)">
+#$ -pe <xsl:value-of select="ns:nodes"/>way 12*<xsl:value-of select="ns:processesPerNode"/>
+<xsl:text>
</xsl:text>
+ </xsl:when>
+ </xsl:choose>
+<xsl:for-each select="ns:exports/ns:name">
+<xsl:value-of select="."/>=<xsl:value-of select="./@value"/><xsl:text>
</xsl:text>
+export<xsl:text> </xsl:text><xsl:value-of select="."/>
+<xsl:text>
</xsl:text>
+</xsl:for-each>
+<xsl:for-each select="ns:preJobCommands/ns:command">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+ </xsl:for-each>
+cd <xsl:text> </xsl:text><xsl:value-of select="ns:workingDirectory"/><xsl:text>
</xsl:text>
+ <xsl:choose><xsl:when test="ns:jobSubmitterCommand">
+<xsl:value-of select="ns:jobSubmitterCommand"/><xsl:text> </xsl:text></xsl:when></xsl:choose><xsl:value-of select="ns:executablePath"/><xsl:text> </xsl:text>
+<xsl:for-each select="ns:inputs/ns:input">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+ </xsl:for-each>
+<xsl:for-each select="ns:postJobCommands/ns:command">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+</xsl:for-each>
+
+</xsl:template>
+
+</xsl:stylesheet>
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/SLURMTemplate.xslt
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/SLURMTemplate.xslt b/modules/configuration/server/src/main/resources/SLURMTemplate.xslt
new file mode 100644
index 0000000..169dbbf
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/SLURMTemplate.xslt
@@ -0,0 +1,69 @@
+<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
+ the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
+ obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
+ in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
+ ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
+ the License. -->
+<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:ns="http://airavata.apache.org/gsi/ssh/2012/12">
+<xsl:output method="text" />
+<xsl:template match="/ns:JobDescriptor">
+<xsl:choose>
+<xsl:when test="ns:shellName">
+#!<xsl:value-of select="ns:shellName"/>
+ </xsl:when>
+ </xsl:choose>
+<xsl:choose>
+ <xsl:when test="ns:queueName">
+#SBATCH -p <xsl:value-of select="ns:queueName"/>
+ </xsl:when>
+ </xsl:choose>
+<xsl:choose>
+ <xsl:when test="ns:nodes">
+#SBATCH -n <xsl:value-of select="ns:nodes"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:mailAddress">
+#SBATCH -mail-user=<xsl:value-of select="ns:mailAddress"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:mailType">
+#SBATCH -mail-type=<xsl:value-of select="ns:mailType"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+<xsl:when test="ns:acountString">
+#SBATCH -A <xsl:value-of select="ns:acountString"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:maxWallTime">
+#SBATCH -t <xsl:value-of select="ns:maxWallTime"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:jobName">
+#SBATCH -J <xsl:value-of select="ns:jobName"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:standardOutFile">
+#SBATCH -o <xsl:value-of select="ns:standardOutFile"/>
+ </xsl:when>
+ </xsl:choose>
+ <xsl:choose>
+ <xsl:when test="ns:standardOutFile">
+#SBATCH -e <xsl:value-of select="ns:standardErrorFile"/>
+ </xsl:when>
+ </xsl:choose>
+cd <xsl:text> </xsl:text><xsl:value-of select="ns:workingDirectory"/><xsl:text>
</xsl:text>
+ <xsl:choose><xsl:when test="ns:jobSubmitterCommand">
+<xsl:value-of select="ns:jobSubmitterCommand"/><xsl:text> </xsl:text></xsl:when></xsl:choose><xsl:value-of select="ns:executablePath"/><xsl:text> </xsl:text>
+<xsl:for-each select="ns:inputs/ns:input">
+ <xsl:value-of select="."/><xsl:text> </xsl:text>
+ </xsl:for-each>
+</xsl:template>
+
+</xsl:stylesheet>
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/airavata-server.properties
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/airavata-server.properties b/modules/configuration/server/src/main/resources/airavata-server.properties
new file mode 100644
index 0000000..5557a10
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/airavata-server.properties
@@ -0,0 +1,283 @@
+#
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+###########################################################################
+#
+# This properties file provides configuration for all Airavata Services:
+# Registry, Workflow Interpreter, GFac, Message Broker, Message Box
+#
+###########################################################################
+
+###########################################################################
+# Airavata Embedded-Tomcat Server Configuration
+###########################################################################
+# By default, tomcat runs on port 80. If the port is changed, it will be
+# have to be specified with port properties. This will be picked up by
+# the registry service to register the service end-points.
+
+port=8080
+
+# Axis2 server automatically picks up IP address from axis configuration,
+# but some DHCP enables machines do not report correct ip addresses,
+# in which case, the IP address can be manually specified.
+
+#ip=192.2.33.12
+
+
+#This property will enable https and stops http, during the url registration, https urls will be stored and
+# http urls will not get registered, because currently airavata supports only one url for each service
+#enable.https=false
+#system properties used by services to register service URLs
+system.gateway=default
+system.user=admin
+system.password=admin
+airavata.server.url=http://localhost:8080/airavata/services/registry
+
+###########################################################################
+# Airavata Registry Configuration
+###########################################################################
+#for derby [AiravataJPARegistry]
+registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
+registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
+# MySql database configuration
+#registry.jdbc.driver=com.mysql.jdbc.Driver
+#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
+registry.jdbc.user=airavata
+registry.jdbc.password=airavata
+start.derby.server.mode=true
+validationQuery=SELECT 1 from CONFIGURATION
+jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
+# Properties to setup registry service
+default.registry.user=admin
+default.registry.password=admin
+default.registry.password.hash.method=SHA
+default.registry.gateway=default
+#for rest [RegistryClient]
+#registry.jdbc.url=http://localhost:9080/airavata-services
+
+#user defined registry accessor classes
+#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+
+############################################################ ###############
+# Airavata Workflow Interpreter Configurations
+###########################################################################
+
+runInThread=true
+provenance=true
+provenanceWriterThreadPoolSize=20
+gfac.embedded=true
+
+#
+# Security Configuration used by Airavata Generic Factory Service
+# to interact with Computational Resources.
+#
+
+###########################################################################
+# Airavata GFac MyProxy GSI credentials to access Grid Resources.
+###########################################################################
+
+myproxy.server=myproxy.teragrid.org
+myproxy.user=ogce
+myproxy.pass=
+myproxy.life=3600
+# XSEDE Trusted certificates can be downloaded from https://software.xsede.org/security/xsede-certs.tar.gz
+trusted.cert.location=/Users/lahirugunathilake/Downloads/certificates
+# SSH PKI key pair or ssh password can be used SSH based authentication is used.
+# if user specify both password authentication gets the higher preference
+
+################# ---------- For ssh key pair authentication ------------------- ################
+#public.ssh.key=/path to public key for ssh
+#ssh.username=username for ssh connection
+#private.ssh.key=/path to private key file for ssh
+#ssh.keypass=passphrase for the private key
+
+
+################# ---------- For ssh key pair authentication ------------------- ################
+#ssh.username=username for ssh connection
+#ssh.password=Password for ssh connection
+
+
+
+###########################################################################
+# Airavata Message Broker Basic Configurations.
+# the Advanced section provides detailed custom configuration properties.
+###########################################################################
+
+# Default derby database configuration
+broker.jdbc.driver=org.apache.derby.jdbc.EmbeddedDriver
+broker.jdbc.url=jdbc:derby:wsmg;create=true;user=airavata;password=airavata
+
+# Note: This database will only be used if 'broker.storage.type=persistent'
+# is set in advanced properties below.
+# MySql database configuration
+#broker.jdbc.driver=com.mysql.jdbc.Driver
+#broker.jdbc.url=jdbc:mysql://localhost:3306/wsmg?user=airavata&password=airavata
+
+###########################################################################
+# Airavata Message Box Basic Configurations,
+# the Advanced section provides detailed custom configuration properties.
+###########################################################################
+
+# Default derby database
+msgBox.jdbc.driver=org.apache.derby.jdbc.EmbeddedDriver
+msgBox.jdbc.url=jdbc:derby:wsmg;create=true;user=airavata;password=airavata
+
+# MySql database configuration
+#msgBox.jdbc.driver=com.mysql.jdbc.Driver
+#msgBox.jdbc.url=jdbc:mysql://localhost:3306/wsmg?user=airavata&password=airavata
+
+###########################################################################
+# Advance configuration to change service implementations
+###########################################################################
+
+#Update the server context root path if airavata server is deployed under a different context root other than axis2
+server.context-root=airavata-server
+
+#
+# Class which implemented HostScheduler interface. It will determine the which host to submit the request
+#
+host.scheduler=org.apache.airavata.gfac.scheduler.impl.SimpleHostScheduler
+
+#
+# Data Service Plugins classes
+#
+datachain.classes= org.apache.airavata.core.gfac.extension.data.RegistryDataService
+
+#
+# Pre execution Plugins classes. For example, GridFTP Input Staging
+#
+prechain.classes= org.apache.airavata.core.gfac.extension.pre.GridFtpInputStaging
+prechain.classes= org.apache.airavata.core.gfac.extension.pre.HttpInputStaging
+
+#
+# Post execution Plugins classes. For example, GridFTP Output Staging
+#
+postchain.classes= org.apache.airavata.core.gfac.extension.post.GridFtpOutputStaging
+postchain.classes= org.apache.airavata.core.gfac.extension.post.OutputRegister
+
+#
+# Advanced Message Broker Configurations
+#
+
+#socket time out in milliseconds for sending messages. (defaults is 20000)
+broker.socket.timeout=60000
+
+broker.storage.type=persistent
+#broker.storage.type=memory
+
+#specifies wether delivery component should be started or not.
+broker.start.delivery.thread=true
+
+#fixed thread pool based delivery
+#broker.delivery.method=pcrew
+
+#dynamic thread pool based delivery
+#broker.delivery.method=parallel
+
+#single thread delivery
+broker.delivery.method=serial
+
+#number of message delivery failures before a url become black listed (default is 2)
+#broker.msg.delivery.retries=2
+
+#time period (in seconds) a url will be kept blacklisted (default is 5 seconds)
+#consumer.expiration.time.gap=5
+
+#maximum number of messages to be send to a one consumer/url at time.
+#applicable if 'broker.delivery.method' is 'pcrew' . (default is 10)
+
+#sending.batch.size=10
+
+#size of the thread pool. only applicable if 'broker.delivery.method' is 'pcrew'. (default is 4)
+#sending.thread.pool.size=4
+
+#
+# Advanced Message Box Configurations
+#
+msgBox.usedatabase=true
+messagePreservationDays=2
+messagePreservationHours=0
+messagePreservationMinutes=0
+messagePerservationIntervalDays=0
+messagePerservationIntervalHours=1
+messagePerservationIntervalMinutes=0
+
+###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
+
+class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
+#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
+
+###########################################################################
+# AMQP Notification Configuration
+###########################################################################
+amqp.notification.enable=1
+
+amqp.broker.host=localhost
+amqp.broker.port=5672
+amqp.broker.username=guest
+amqp.broker.password=guest
+
+amqp.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPSenderImpl
+amqp.topic.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPTopicSenderImpl
+amqp.broadcast.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPBroadcastSenderImpl
+
+###---------------------------Computational Middleware Configurations---------------------------###
+
+#enable.application.job.status.history=true
+#http://localhost:8080/axis2/services/RegistryService?wsdl
+registry.service.wsdl=http://localhost:${port}/${server.context-root}/services/RegistryService?wsdl
+
+# If false, disables two phase commit when submitting jobs
+TwoPhase=true
+
+
+###---------------------------Monitoring module Configurations---------------------------###
+#This will be the primary monitoring tool which runs in airavata, in future there will be multiple monitoring
+#mechanisms and one would be able to start a monitor
+monitors=org.apache.airavata.job.monitor.impl.pull.qstat.QstatMonitor,org.apache.airavata.job.monitor.impl.LocalJobMonitor
+#,org.apache.airavata.job.monitor.impl.push.amqp.AMQPMonitor
+#This is the amqp related configuration and this lists down the Rabbitmq host, this is an xsede specific configuration
+amqp.hosts=info1.dyn.teragrid.org,info2.dyn.teragrid.org
+proxy.file.path=/Users/lahirugunathilake/Downloads/x509up_u503876
+connection.name=xsede_private
+
+
+###---------------------------Orchestrator module Configurations---------------------------###
+job.submitter=org.apache.airavata.orchestrator.core.impl.EmbeddedGFACJobSubmitter
+job.validator=org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator
+submitter.interval=10000
+threadpool.size=10
+start.submitter=true
+embedded.mode=true
+enable.validation=false
+orchestrator=org.apache.airavata.orchestrator.server.OrchestratorServer
+
+###---------------------------API Server module Configurations---------------------------###
+apiserver=org.apache.airavata.api.server.AiravataAPIServer
+
+###---------------------------Airavata Server Configurations---------------------------###
+servers=apiserver,orchestrator
+#shutdown.trategy=NONE
+shutdown.trategy=SELF_TERMINATE
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/airavata.jks
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diff --git a/modules/configuration/server/src/main/resources/airavata.jks b/modules/configuration/server/src/main/resources/airavata.jks
new file mode 100644
index 0000000..bd6d8fe
Binary files /dev/null and b/modules/configuration/server/src/main/resources/airavata.jks differ
[3/5] https://issues.apache.org/jira/browse/AIRAVATA-1121 + disabling
some test cases that fail due to unsupported workflow for this version
Posted by sa...@apache.org.
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/axis2.xml
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diff --git a/modules/distribution/airavata-server/src/main/resources/conf/axis2.xml b/modules/distribution/airavata-server/src/main/resources/conf/axis2.xml
deleted file mode 100644
index 7637700..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/axis2.xml
+++ /dev/null
@@ -1,533 +0,0 @@
-<!-- ~ Licensed to the Apache Software Foundation (ASF) under one ~ or more
- contributor license agreements. See the NOTICE file ~ distributed with this
- work for additional information ~ regarding copyright ownership. The ASF
- licenses this file ~ to you under the Apache License, Version 2.0 (the ~
- "License"); you may not use this file except in compliance ~ with the License.
- You may obtain a copy of the License at ~ ~ http://www.apache.org/licenses/LICENSE-2.0
- ~ ~ Unless required by applicable law or agreed to in writing, ~ software
- distributed under the License is distributed on an ~ "AS IS" BASIS, WITHOUT
- WARRANTIES OR CONDITIONS OF ANY ~ KIND, either express or implied. See the
- License for the ~ specific language governing permissions and limitations
- ~ under the License. -->
-
-<axisconfig name="AxisJava2.0">
- <!-- ================================================= -->
- <!-- Parameters -->
- <!-- ================================================= -->
- <parameter name="hotdeployment">true</parameter>
- <parameter name="hotupdate">false</parameter>
- <parameter name="enableMTOM">false</parameter>
- <parameter name="enableSwA">false</parameter>
-
- <!--Uncomment if you want to enable file caching for attachments -->
- <!--parameter name="cacheAttachments">true</parameter> <parameter name="attachmentDIR"></parameter>
- <parameter name="sizeThreshold">4000</parameter -->
-
- <!--Uncomment if you want to plugin your own attachments lifecycle implementation -->
- <!--<attachmentsLifecycleManager class="org.apache.axiom.attachments.lifecycle.impl.LifecycleManagerImpl"/> -->
-
-
- <!--Uncomment if you want to enable the reduction of the in-memory cache
- of WSDL definitions -->
- <!--In some server environments, the available memory heap is limited
- and can fill up under load -->
- <!--Since in-memory copies of WSDL definitions can be large, some steps
- can be taken -->
- <!--to reduce the memory needed for the cached WSDL definitions. -->
- <!--parameter name="reduceWSDLMemoryCache">true</parameter -->
-
- <!--This will give out the timout of the configuration contexts, in milliseconds -->
- <parameter name="ConfigContextTimeoutInterval">30000</parameter>
-
- <!--During a fault, stack trace can be sent with the fault message. The
- following flag will control -->
- <!--that behavior. -->
- <parameter name="sendStacktraceDetailsWithFaults">false</parameter>
-
- <!--If there aren't any information available to find out the fault reason,
- we set the message of the exception -->
- <!--as the faultreason/Reason. But when a fault is thrown from a service
- or some where, it will be -->
- <!--wrapped by different levels. Due to this the initial exception message
- can be lost. If this flag -->
- <!--is set, then Axis2 tries to get the first exception and set its message
- as the faultreason/Reason. -->
- <parameter name="DrillDownToRootCauseForFaultReason">false</parameter>
-
- <parameter name="userName">admin</parameter>
- <parameter name="password">axis2</parameter>
-
- <!--To override repository/services you need to uncomment following parameter
- and value SHOULD be absolute file path. -->
- <!--ServicesDirectory only works on the following cases -->
- <!---File based configurator and in that case the value should be a file
- URL (http:// not allowed) -->
- <!---When creating URL Based configurator with URL file:// -->
- <!--- War based configurator with expanded case , -->
-
- <!--All the other scenarios it will be ignored. -->
- <!--<parameter name="ServicesDirectory">service</parameter> -->
- <!--To override repository/modules you need to uncomment following parameter
- and value SHOULD be absolute file path -->
- <!--<parameter name="ModulesDirectory">modules</parameter> -->
-
-
- <!--Following params will set the proper context paths for invocations.
- All the endpoints will have a commons context -->
- <!--root which can configured using the following contextRoot parameter -->
- <!--<parameter name="contextRoot">axis2</parameter> -->
-
- <!--Our HTTP endpoints can handle both REST and SOAP. Following parameters
- can be used to distinguiush those endpoints -->
- <!--In case of a servlet, if you change this you have to manually change
- the settings of your servlet container to map this -->
- <!--context path to proper Axis2 servlets -->
- <!--<parameter name="servicePath">services</parameter> -->
- <!--<parameter name="restPath">rest</parameter> -->
-
- <!-- Following parameter will completely disable REST handling in Axis2 -->
- <parameter name="disableREST" locked="false">false</parameter>
-
- <!-- Following parameter will suppress generation of SOAP 1.2 bindings
- in auto-generated WSDL files -->
- <parameter name="disableSOAP12" locked="true">false</parameter>
-
- <!--POJO deployer , this will alow users to drop .class file and make
- that into a service -->
- <deployer extension=".class" directory="pojo"
- class="org.apache.axis2.deployment.POJODeployer" />
- <deployer extension=".jar" directory="servicejars"
- class="org.apache.axis2.jaxws.framework.JAXWSDeployer" />
- <deployer extension=".jar" directory="transports"
- class="org.apache.axis2.deployment.TransportDeployer" />
-
- <!--CORBA deployer , this will alow users to invoke remote CORBA services
- through Axis2 -->
- <!--<deployer extension=".xml" directory="corba" class="org.apache.axis2.corba.deployer.CorbaDeployer"/> -->
-
- <!--<deployer extension=".jsa" directory="rmiservices" class="org.apache.axis2.rmi.deploy.RMIServiceDeployer"/> -->
-
-
- <!-- Following parameter will set the host name for the epr -->
- <!--<parameter name="hostname" locked="true">myhost.com</parameter> -->
-
- <!-- If you have a front end host which exposes this webservice using
- a different public URL -->
- <!-- use this parameter to override autodetected url -->
- <!--<parameter name="httpFrontendHostUrl">https://someotherhost/context</parameter> -->
-
-
- <!-- The way of adding listener to the system -->
- <!-- <listener class="org.apache.axis2.ObserverIMPL"> -->
- <!-- <parameter name="RSS_URL">http://127.0.0.1/rss</parameter> -->
- <!-- </listener> -->
-
- <threadContextMigrators>
- <threadContextMigrator listId="JAXWS-ThreadContextMigrator-List"
- class="org.apache.axis2.jaxws.addressing.migrator.EndpointContextMapMigrator" />
- </threadContextMigrators>
-
- <!-- ================================================= -->
- <!-- Message Receivers -->
- <!-- ================================================= -->
- <!--This is the default MessageReceiver for the system , if you want
- to have MessageReceivers for -->
- <!--all the other MEP implement it and add the correct entry to here
- , so that you can refer from -->
- <!--any operation -->
- <!--Note : You can override this for a particular service by adding the
- same element with your requirement -->
- <messageReceivers>
- <messageReceiver mep="http://www.w3.org/2004/08/wsdl/in-only"
- class="org.apache.axis2.receivers.RawXMLINOnlyMessageReceiver" />
- <messageReceiver mep="http://www.w3.org/2004/08/wsdl/in-out"
- class="org.apache.axis2.receivers.RawXMLINOutMessageReceiver" />
- <messageReceiver mep="http://www.w3.org/2006/01/wsdl/in-only"
- class="org.apache.axis2.receivers.RawXMLINOnlyMessageReceiver" />
- <messageReceiver mep="http://www.w3.org/2006/01/wsdl/in-out"
- class="org.apache.axis2.receivers.RawXMLINOutMessageReceiver" />
- <messageReceiver mep="http://www.w3.org/ns/wsdl/in-only"
- class="org.apache.axis2.receivers.RawXMLINOnlyMessageReceiver" />
- <messageReceiver mep="http://www.w3.org/ns/wsdl/in-out"
- class="org.apache.axis2.receivers.RawXMLINOutMessageReceiver" />
- </messageReceivers>
-
- <!-- ================================================= -->
- <!-- Message Formatter -->
- <!-- ================================================= -->
- <!--Following content type to message formatter mapping can be used to
- implement support for different message -->
- <!--format serialization in Axis2. These message formats are expected
- to be resolved based on the content type. -->
- <messageFormatters>
- <messageFormatter contentType="application/x-www-form-urlencoded"
- class="org.apache.axis2.transport.http.XFormURLEncodedFormatter" />
- <messageFormatter contentType="multipart/form-data"
- class="org.apache.axis2.transport.http.MultipartFormDataFormatter" />
- <messageFormatter contentType="application/xml"
- class="org.apache.axis2.transport.http.ApplicationXMLFormatter" />
- <messageFormatter contentType="text/xml"
- class="org.apache.axis2.transport.http.SOAPMessageFormatter" />
- <messageFormatter contentType="application/soap+xml"
- class="org.apache.axis2.transport.http.SOAPMessageFormatter" />
- <messageFormatter contentType="application/json"
- class="org.apache.airavata.json.StaxonJSONFormatter"/>
- </messageFormatters>
-
- <!-- ================================================= -->
- <!-- Message Builders -->
- <!-- ================================================= -->
- <!--Following content type to builder mapping can be used to implement
- support for different message -->
- <!--formats in Axis2. These message formats are expected to be resolved
- based on the content type. -->
- <messageBuilders>
- <messageBuilder contentType="application/xml"
- class="org.apache.axis2.builder.ApplicationXMLBuilder" />
- <messageBuilder contentType="application/x-www-form-urlencoded"
- class="org.apache.axis2.builder.XFormURLEncodedBuilder" />
- <messageBuilder contentType="multipart/form-data"
- class="org.apache.axis2.builder.MultipartFormDataBuilder" />
- <messageBuilder contentType="application/json"
- class="org.apache.airavata.json.StaxonJSONBuilder"/>
- </messageBuilders>
-
- <!-- ================================================= -->
- <!-- Transport Ins -->
- <!-- ================================================= -->
- <transportReceiver name="http"
- class="org.apache.axis2.transport.http.SimpleHTTPServer">
- <parameter name="port">8080</parameter>
- <!-- Here is the complete list of supported parameters (see example
- settings further below): port: the port to listen on (default 6060) hostname:
- if non-null, url prefix used in reply-to endpoint references (default null)
- originServer: value of http Server header in outgoing messages (default "Simple-Server/1.1")
- requestTimeout: value in millis of time that requests can wait for data (default
- 20000) requestTcpNoDelay: true to maximize performance and minimize latency
- (default true) false to minimize bandwidth consumption by combining segments
- requestCoreThreadPoolSize: number of threads available for request processing
- (unless queue fills up) (default 25) requestMaxThreadPoolSize: number of
- threads available for request processing if queue fills up (default 150)
- note that default queue never fills up: see HttpFactory threadKeepAliveTime:
- time to keep threads in excess of core size alive while inactive (default
- 180) note that no such threads can exist with default unbounded request queue
- threadKeepAliveTimeUnit: TimeUnit of value in threadKeepAliveTime (default
- SECONDS) (default SECONDS) -->
- <!-- <parameter name="hostname">http://www.myApp.com/ws</parameter> -->
- <!-- <parameter name="originServer">My-Server/1.1</parameter> -->
- <!-- <parameter name="requestTimeout">10000</parameter> -->
- <!-- <parameter name="requestTcpNoDelay">false</parameter> -->
- <!-- <parameter name="requestCoreThreadPoolSize">50</parameter> -->
- <!-- <parameter name="requestMaxThreadPoolSize">100</parameter> -->
- <!-- <parameter name="threadKeepAliveTime">240000</parameter> -->
- <!-- <parameter name="threadKeepAliveTimeUnit">MILLISECONDS</parameter> -->
- </transportReceiver>
-
- <!--Uncomment if you want to have TCP transport support -->
- <!--transportReceiver name="tcp" class="org.apache.axis2.transport.tcp.TCPServer">
- <parameter name="port">6060</parameter -->
- >
- <!--If you want to give your own host address for EPR generation -->
- <!--uncomment the following paramter , and set it as you required. -->
- <!--<parameter name="hostname">tcp://myApp.com/ws</parameter> -->
- <!-- /transportReceiver -->
-
- <!-- ================================================= -->
- <!-- Transport Outs -->
- <!-- ================================================= -->
-
- <!--Uncomment if you want to have TCP transport support -->
- <!-- <transportSender name="tcp" class="org.apache.axis2.transport.tcp.TCPTransportSender"/> -->
- <transportSender name="local"
- class="org.apache.axis2.transport.local.LocalTransportSender" />
- <transportSender name="http"
- class="org.apache.axis2.transport.http.CommonsHTTPTransportSender">
- <parameter name="PROTOCOL">HTTP/1.1</parameter>
- <parameter name="Transfer-Encoding">chunked</parameter>
-
- <!-- If following is set to 'true', optional action part of the Content-Type
- will not be added to the SOAP 1.2 messages -->
- <!-- <parameter name="OmitSOAP12Action">true</parameter> -->
- </transportSender>
-
- <transportSender name="https"
- class="org.apache.axis2.transport.http.CommonsHTTPTransportSender">
- <parameter name="PROTOCOL">HTTP/1.1</parameter>
- <parameter name="Transfer-Encoding">chunked</parameter>
- </transportSender>
-
- <!-- Please enable this if you need the java transport -->
- <!-- <transportSender name="java" class="org.apache.axis2.transport.java.JavaTransportSender"/> -->
-
- <!-- ================================================= -->
- <!-- Global Modules -->
- <!-- ================================================= -->
- <!-- Comment this to disable Addressing -->
- <module ref="addressing" />
-
- <!--Configuring module , providing parameters for modules whether they
- refer or not -->
- <!--<moduleConfig name="addressing"> -->
- <!--<parameter name="addressingPara">N/A</parameter> -->
- <!--</moduleConfig> -->
-
- <!-- ================================================= -->
- <!-- Clustering -->
- <!-- ================================================= -->
- <!-- To enable clustering for this node, set the value of "enable" attribute
- of the "cluster" element to "true". The initilization of a node in the cluster
- is handled by the class corresponding to the "class" attribute of the "cluster"
- element. It is also responsible for getting this node to join the cluster. -->
- <cluster class="org.apache.axis2.clustering.tribes.TribesClusterManager"
- enable="false">
-
- <!-- This parameter indicates whther the cluster has to be automatically
- initalized when the AxisConfiguration is built. If set to "true" the initialization
- will not be done at that stage, and some other party will have to explictly
- initialize the cluster. -->
- <parameter name="AvoidInitiation">true</parameter>
-
- <!-- Indicates whether this member is active or not. This will be
- useful in a setup where members are deployed in ACTIVE and/or PASSIVE configuration -->
- <parameter name="isActive">true</parameter>
-
- <!-- An implementation of org.apache.axis2.clustering.MembershipListener
- which will be called on membership changes -->
- <!-- <parameter name="membershipListener"> <class>org.apache.axis2.clustering.MembershipListenerImpl</class>
- <properties> <property name="foo">bar</property> </properties> </parameter> -->
-
- <!-- The membership scheme used in this setup. The only values supported
- at the moment are "multicast" and "wka" 1. multicast - membership is automatically
- discovered using multicasting 2. wka - Well-Known Address based multicasting.
- Membership is discovered with the help of one or more nodes running at a
- Well-Known Address. New members joining a cluster will first connect to a
- well-known node, register with the well-known node and get the membership
- list from it. When new members join, one of the well-known nodes will notify
- the others in the group. When a member leaves the cluster or is deemed to
- have left the cluster, it will be detected by the Group Membership Service
- (GMS) using a TCP ping mechanism. -->
- <parameter name="membershipScheme">multicast</parameter>
-
- <!-- The clustering domain/group. Nodes in the same group will belong
- to the same multicast domain. There will not be interference between nodes
- in different groups. -->
- <parameter name="domain">apache.axis2.domain</parameter>
-
- <!-- This parameter is only valid when the "mode" parameter is set
- to application. This indicates the domain in which the the applications being
- load balanced are deployed. -->
- <parameter name="applicationDomain">apache.axis2.application.domain
- </parameter>
-
- <!-- When a Web service request is received, and processed, before
- the response is sent to the client, should we update the states of all members
- in the cluster? If the value of this parameter is set to "true", the response
- to the client will be sent only after all the members have been updated.
- Obviously, this can be time consuming. In some cases, such this overhead
- may not be acceptable, in which case the value of this parameter should be
- set to "false" -->
- <parameter name="synchronizeAll">true</parameter>
-
- <!-- The maximum number of times we need to retry to send a message
- to a particular node before giving up and considering that node to be faulty -->
- <parameter name="maxRetries">10</parameter>
-
- <!-- The multicast address to be used -->
- <parameter name="mcastAddress">228.0.0.4</parameter>
-
- <!-- The multicast port to be used -->
- <parameter name="mcastPort">45564</parameter>
-
- <!-- The frequency of sending membership multicast messages (in ms) -->
- <parameter name="mcastFrequency">500</parameter>
-
- <!-- The time interval within which if a member does not respond,
- the member will be deemed to have left the group (in ms) -->
- <parameter name="memberDropTime">3000</parameter>
-
- <!-- The IP address of the network interface to which the multicasting
- has to be bound to. Multicasting would be done using this interface. -->
- <parameter name="mcastBindAddress">127.0.0.1</parameter>
-
- <!-- The host name or IP address of this member -->
- <parameter name="localMemberHost">127.0.0.1</parameter>
-
- <!-- The TCP port used by this member. This is the port through which
- other nodes will contact this member -->
- <parameter name="localMemberPort">4000</parameter>
-
- <!-- Preserve message ordering. This will be done according to sender
- order. -->
- <parameter name="preserveMessageOrder">true</parameter>
-
- <!-- Maintain atmost-once message processing semantics -->
- <parameter name="atmostOnceMessageSemantics">true</parameter>
-
- <!-- The list of static or well-known members. These entries will
- only be valid if the "membershipScheme" above is set to "wka" -->
- <members>
- <member>
- <hostName>127.0.0.1</hostName>
- <port>4000</port>
- </member>
- <member>
- <hostName>127.0.0.1</hostName>
- <port>4001</port>
- </member>
- </members>
-
- <!-- Enable the load balancer entry if you need to run this node
- as a load balancer. Multiple application domains with different LoadBalanceEventHandler
- implementations can be defined in this section. -->
- <loadBalancer enable="false">
- <applicationDomain name="apache.axis2.application.domain"
- handler="org.apache.axis2.clustering.DefaultLoadBalanceEventHandler" />
- </loadBalancer>
-
- <!-- This interface is responsible for handling configuration management.
- Configuraion changes include: 1. Rebooting an entire cluster, in which case,
- all nodes have to load the new Axis2 configuration in a consistent manner
- 2. Deploying a new service to a cluster or undeploying a service from a cluster
- 3. Changing the policies of a service deployed on the cluster The "enable"
- attribute indicates whether Configuration management has been enabled -->
- <configurationManager
- class="org.apache.axis2.clustering.configuration.DefaultConfigurationManager"
- enable="true">
- <listener
- class="org.apache.axis2.clustering.configuration.DefaultConfigurationManagerListener" />
- </configurationManager>
-
- <!-- This interface is responsible for handling context replication.
- The property changes in the Axis2 context hierarchy in this node, are propagated
- to all other nodes in the cluster. The "excludes" patterns can be used to
- specify the prefixes (e.g. local_*) or suffixes (e.g. *_local) of the properties
- to be excluded from replication. The pattern "*" indicates that all properties
- in a particular context should not be replicated. The "enable" attribute
- indicates whether context replication has been enabled -->
- <contextManager
- class="org.apache.axis2.clustering.context.DefaultContextManager"
- enable="true">
- <listener
- class="org.apache.axis2.clustering.context.DefaultContextManagerListener" />
- <replication>
- <defaults>
- <exclude name="local_*" />
- <exclude name="LOCAL_*" />
- </defaults>
- <context class="org.apache.axis2.context.ConfigurationContext">
- <exclude name="UseAsyncOperations" />
- <exclude name="SequencePropertyBeanMap" />
- </context>
- <context class="org.apache.axis2.context.ServiceGroupContext">
- <exclude name="my.sandesha.*" />
- </context>
- <context class="org.apache.axis2.context.ServiceContext">
- <exclude name="my.sandesha.*" />
- </context>
- </replication>
- </contextManager>
- </cluster>
-
- <!-- ================================================= -->
- <!-- Phases -->
- <!-- ================================================= -->
- <phaseOrder type="InFlow">
- <!-- System predefined phases -->
- <phase name="Transport">
- <handler name="RequestURIBasedDispatcher"
- class="org.apache.axis2.dispatchers.RequestURIBasedDispatcher">
- <order phase="Transport" />
- </handler>
- <handler name="SOAPActionBasedDispatcher"
- class="org.apache.axis2.dispatchers.SOAPActionBasedDispatcher">
- <order phase="Transport" />
- </handler>
- </phase>
- <phase name="Addressing">
- <handler name="AddressingBasedDispatcher"
- class="org.apache.axis2.dispatchers.AddressingBasedDispatcher">
- <order phase="Addressing" />
- </handler>
- </phase>
- <phase name="Security" />
- <phase name="PreDispatch" />
- <phase name="Dispatch" class="org.apache.axis2.engine.DispatchPhase">
- <handler name="RequestURIBasedDispatcher"
- class="org.apache.axis2.dispatchers.RequestURIBasedDispatcher" />
- <handler name="SOAPActionBasedDispatcher"
- class="org.apache.axis2.dispatchers.SOAPActionBasedDispatcher" />
- <handler name="RequestURIOperationDispatcher"
- class="org.apache.axis2.dispatchers.RequestURIOperationDispatcher" />
- <handler name="SOAPMessageBodyBasedDispatcher"
- class="org.apache.axis2.dispatchers.SOAPMessageBodyBasedDispatcher" />
- <handler name="HTTPLocationBasedDispatcher"
- class="org.apache.axis2.dispatchers.HTTPLocationBasedDispatcher" />
- <handler name="GenericProviderDispatcher"
- class="org.apache.axis2.jaxws.dispatchers.GenericProviderDispatcher" />
- <handler name="MustUnderstandValidationDispatcher"
- class="org.apache.axis2.jaxws.dispatchers.MustUnderstandValidationDispatcher" />
- </phase>
- <phase name="RMPhase" />
- <!-- System predefined phases -->
- <!-- After Postdispatch phase module author or service author can
- add any phase he want -->
- <phase name="OperationInPhase">
- <handler name="MustUnderstandChecker"
- class="org.apache.axis2.jaxws.dispatchers.MustUnderstandChecker">
- <order phase="OperationInPhase" />
- </handler>
- </phase>
- <phase name="soapmonitorPhase" />
- </phaseOrder>
- <phaseOrder type="OutFlow">
- <!-- user can add his own phases to this area -->
- <phase name="soapmonitorPhase" />
- <phase name="OperationOutPhase" />
- <!--system predefined phase -->
- <!--these phase will run irrespective of the service -->
- <phase name="RMPhase" />
- <phase name="PolicyDetermination" />
- <phase name="MessageOut" />
- <phase name="Security" />
- </phaseOrder>
- <phaseOrder type="InFaultFlow">
- <phase name="Addressing">
- <handler name="AddressingBasedDispatcher"
- class="org.apache.axis2.dispatchers.AddressingBasedDispatcher">
- <order phase="Addressing" />
- </handler>
- </phase>
- <phase name="Security" />
- <phase name="PreDispatch" />
- <phase name="Dispatch" class="org.apache.axis2.engine.DispatchPhase">
- <handler name="RequestURIBasedDispatcher"
- class="org.apache.axis2.dispatchers.RequestURIBasedDispatcher" />
- <handler name="SOAPActionBasedDispatcher"
- class="org.apache.axis2.dispatchers.SOAPActionBasedDispatcher" />
- <handler name="RequestURIOperationDispatcher"
- class="org.apache.axis2.dispatchers.RequestURIOperationDispatcher" />
- <handler name="SOAPMessageBodyBasedDispatcher"
- class="org.apache.axis2.dispatchers.SOAPMessageBodyBasedDispatcher" />
- <handler name="HTTPLocationBasedDispatcher"
- class="org.apache.axis2.dispatchers.HTTPLocationBasedDispatcher" />
- <handler name="GenericProviderDispatcher"
- class="org.apache.axis2.jaxws.dispatchers.GenericProviderDispatcher" />
- <handler name="MustUnderstandValidationDispatcher"
- class="org.apache.axis2.jaxws.dispatchers.MustUnderstandValidationDispatcher" />
- </phase>
- <phase name="RMPhase" />
- <!-- user can add his own phases to this area -->
- <phase name="OperationInFaultPhase" />
- <phase name="soapmonitorPhase" />
- </phaseOrder>
- <phaseOrder type="OutFaultFlow">
- <!-- user can add his own phases to this area -->
- <phase name="soapmonitorPhase" />
- <phase name="OperationOutFaultPhase" />
- <phase name="RMPhase" />
- <phase name="PolicyDetermination" />
- <phase name="MessageOut" />
- <phase name="Security" />
- </phaseOrder>
-</axisconfig>
-
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/gfac-config.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/conf/gfac-config.xml b/modules/distribution/airavata-server/src/main/resources/conf/gfac-config.xml
deleted file mode 100644
index 0607e49..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/gfac-config.xml
+++ /dev/null
@@ -1,101 +0,0 @@
-<!-- ~ Licensed to the Apache Software Foundation (ASF) under one ~ or more
- contributor license agreements. See the NOTICE file ~ distributed with this
- work for additional information ~ regarding copyright ownership. The ASF
- licenses this file ~ to you under the Apache License, Version 2.0 (the ~
- "License"); you may not use this file except in compliance ~ with the License.
- You may obtain a copy of the License at ~ ~ http://www.apache.org/licenses/LICENSE-2.0
- ~ ~ Unless required by applicable law or agreed to in writing, ~ software
- distributed under the License is distributed on an ~ "AS IS" BASIS, WITHOUT
- WARRANTIES OR CONDITIONS OF ANY ~ KIND, either express or implied. See the
- License for the ~ specific language governing permissions and limitations
- ~ under the License. -->
-
-<GFac>
- <GlobalHandlers>
- <InHandlers>
- <Handler class="org.apache.airavata.gfac.handler.AppDescriptorCheckHandler">
- <property name="name" value="value"/>
- </Handler>
- </InHandlers>
- <OutHandlers></OutHandlers>
- </GlobalHandlers>
- <Provider class="org.apache.airavata.gfac.provider.impl.LocalProvider" host="org.apache.airavata.schemas.gfac.impl.HostDescriptionTypeImpl">
- <InHandlers>
- <Handler class="org.apache.airavata.gfac.handler.LocalDirectorySetupHandler"/>
- </InHandlers>
- </Provider>
- <Provider class="org.apache.airavata.gfac.provider.impl.GramProvider" host="org.apache.airavata.schemas.gfac.impl.GlobusHostTypeImpl">
- <property name="name" value="value"/>
- <InHandlers>
- <Handler class="org.apache.airavata.gfac.handler.GramDirectorySetupHandler">
- <property name="name" value="value"/>
- </Handler>
- <Handler class="org.apache.airavata.gfac.handler.GridFTPInputHandler"/>
- </InHandlers>
- <OutHandlers>
- <Handler class="org.apache.airavata.gfac.handler.GridFTPOutputHandler"/>
- </OutHandlers>
- </Provider>
- <Provider class="org.apache.airavata.gfac.provider.impl.BESProvider" host="org.apache.airavata.schemas.gfac.impl.UnicoreHostTypeImpl">
- </Provider>
-
- <Provider class="org.apache.airavata.gfac.ec2.EC2Provider" host="org.apache.airavata.schemas.gfac.impl.Ec2HostTypeImpl">
- <InHandlers/>
- <OutHandlers/>
- </Provider>
-
- <Provider class="org.apache.airavata.gfac.provider.impl.HadoopProvider" host="org.apache.airavata.schemas.gfac.impl.HadoopHostTypeImpl">
- <InHandlers>
- <Handler class="org.apache.airavata.gfac.handler.HadoopDeploymentHandler"/>
- <Handler class="org.apache.airavata.gfac.handler.HDFSDataMovementHandler"/>
- </InHandlers>
- <OutHandlers/>
- </Provider>
-
- <Application name="UltraScan">
- <InHandlers>
- <Handler class="org.apache.airavata.gfac.handler.GramDirectorySetupHandler"/>
- <Handler class="org.apache.airavata.gfac.handler.GridFTPInputHandler"/>
- </InHandlers>
- <OutHandlers>
- <Handler class="org.apache.airavata.gfac.handler.GridFTPOutputHandler"/>
- </OutHandlers>
- </Application>
-
- <Provider class="org.apache.airavata.gfac.provider.impl.SSHProvider" host="org.apache.airavata.schemas.gfac.impl.SSHHostTypeImpl">
- <InHandlers>
- <Handler class="org.apache.airavata.gfac.handler.SCPDirectorySetupHandler"/>
- <Handler class="org.apache.airavata.gfac.handler.SCPInputHandler"/>
- </InHandlers>
- <OutHandlers>
- <Handler class="org.apache.airavata.gfac.handler.SCPOutputHandler"/>
- </OutHandlers>
- </Provider>
- <Provider class="org.apache.airavata.gfac.provider.impl.GSISSHProvider" host="org.apache.airavata.schemas.gfac.impl.GsisshHostTypeImpl">
- <InHandlers>
- <Handler class="org.apache.airavata.gfac.handler.SCPDirectorySetupHandler"/>
- <!--Handler class="org.apache.airavata.gfac.handler.AdvancedSCPInputHandler">
- <property name="privateKeyPath" value="/Users/lahirugunathilake/.ssh/id_dsa"/>
- <property name="publicKeyPath" value="/Users/lahirugunathilake/.ssh/id_dsa.pub"/>
- <property name="userName" value="root"/>
- <property name="hostName" value="gw98.iu.xsede.org"/>
- <property name="inputPath" value="/tmp"/>
- <property name="passPhrase" value="/home/airavata/outputData"/>
- <property name="password" value="/home/airavata/outputData"/> <either we have to set password or keys, password has higher preference>
- </Handler-->
- <Handler class="org.apache.airavata.gfac.handler.SCPInputHandler"/>
- </InHandlers>
- <OutHandlers>
- <Handler class="org.apache.airavata.gfac.handler.SCPOutputHandler"/>
- <!--Handler class="org.apache.airavata.gfac.handler.AdvancedSCPOutputHandler">
- <property name="privateKeyPath" value="/Users/lahirugunathilake/.ssh/id_dsa"/>
- <property name="publicKeyPath" value="/Users/lahirugunathilake/.ssh/id_dsa.pub"/>
- <property name="userName" value="root"/>
- <property name="hostName" value="gw111.iu.xsede.org"/>
- <property name="outputPath" value="/tmp"/>
- <property name="passPhrase" value="/home/airavata/outputData"/>
- <property name="password" value="/home/airavata/outputData"/> <either we have to set password or keys, password has higher preference>
- </Handler-->
- </OutHandlers>
- </Provider>
-</GFac>
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/gsissh.properties
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/conf/gsissh.properties b/modules/distribution/airavata-server/src/main/resources/conf/gsissh.properties
deleted file mode 100644
index 3fdf76d..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/gsissh.properties
+++ /dev/null
@@ -1,26 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-# Specifies system level configurations as a key/value pairs.
-###########################################################################
-
-StrictHostKeyChecking=no
-ssh.session.timeout=360000
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/host.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/conf/host.xml b/modules/distribution/airavata-server/src/main/resources/conf/host.xml
deleted file mode 100644
index 8e57765..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/host.xml
+++ /dev/null
@@ -1,86 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!-- ~ Licensed to the Apache Software Foundation (ASF) under one ~ or more
- contributor license agreements. See the NOTICE file ~ distributed with this
- work for additional information ~ regarding copyright ownership. The ASF
- licenses this file ~ to you under the Apache License, Version 2.0 (the ~
- "License"); you may not use this file except in compliance ~ with the License.
- You may obtain a copy of the License at ~ ~ http://www.apache.org/licenses/LICENSE-2.0
- ~ ~ Unless required by applicable law or agreed to in writing, ~ software
- distributed under the License is distributed on an ~ "AS IS" BASIS, WITHOUT
- WARRANTIES OR CONDITIONS OF ANY ~ KIND, either express or implied. See the
- License for the ~ specific language governing permissions and limitations
- ~ under the License. -->
-
-<servers>
- <server>
- <type>local</type>
- <name>LocalHost</name>
- <host>127.0.0.1</host>
- </server>
- <!-- Test jobs for steele and forge.
- <server>
- <name>steele.purdue.teragrid.org</name>
- <host>steele.purdue.teragrid.org</host>
- <gram.endpoint>tg-steele.rcac.purdue.edu:2119/jobmanager-pbs</gram.endpoint>
- <gridftp.endpoint>gsiftp://tg-data.purdue.teragrid.org:2811/</gridftp.endpoint>
- </server>
-
- <server>
- <name>forge.ncsa.teragrid.org</name>
- <host>forge.ncsa.teragrid.org</host>
- <gram.endpoint>grid-forge.ncsa.xsede.org:2119/jobmanager-pbs</gram.endpoint>
- <gridftp.endpoint>gsiftp://gridftp-forge.ncsa.xsede.org:2811/</gridftp.endpoint>
- </server>
- -->
- <server>
- <name>globus-lonestar</name>
- <type>globus</type>
- <host>lonestar4.tacc.teragrid.org</host>
- <gram.endpoint>gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge</gram.endpoint>
- <gridftp.endpoint>gsiftp://gridftp1.ls4.tacc.utexas.edu:2811/</gridftp.endpoint>
- </server>
-
- <server>
- <name>globus-stampede</name>
- <type>globus</type>
- <monitor host="stampede.tacc.utexas.edu">
- <primary>org.apache.airavata.monitor.impl.AMQPMonitor</primary>
- <secondary>org.apache.airavata.monitor.impl.GramMonitor</secondary>
- </monitor>
- <monitor hostType="SSHHostTypeImpl">
- <primary>org.apache.airavata.monitor.impl.MoabMonitor</primary>
- <secondary>org.apache.airavata.monitor.impl.QstatMonitor</secondary>
- </monitor>
- <host>stampede.tacc.utexas.edu</host>
- <gram.endpoint>login5.stampede.tacc.utexas.edu:2119/jobmanager-slurm3</gram.endpoint>
- <gridftp.endpoint>gsiftp://data1.stampede.tacc.utexas.edu:2811/</gridftp.endpoint>
- </server>
-
- <server>
- <name>globus-trestles</name>
- <type>globus</type>
- <host>trestles.sdsc.edu</host>
- <gram.endpoint>trestles-login2.sdsc.edu:2119/jobmanager-pbstest2</gram.endpoint>
- <gridftp.endpoint>gsiftp://trestles-dm1.sdsc.edu:2811/</gridftp.endpoint>
- </server>
- <server>
- <type>ssh</type>
- <name>bigred2</name>
- <host>bigred2.uits.iu.edu</host>
- <hpc.resource>true</hpc.resource>
- </server>
- <server>
- <type>gsissh</type>
- <name>gsissh-trestles</name>
- <host>trestles.sdsc.edu</host>
- </server>
- <!--
- <server>
- <name>kraken</name>
- <host>gsissh.kraken.nics.xsede.org</host>
- <gram.endpoint>grid.nics.xsede.org:2119/jobmanager-pbs</gram.endpoint>
- <gridftp.endpoint>gsiftp://gridftp.kraken.nics.xsede.org:2811/</gridftp.endpoint>
- </server> -->
-
-</servers>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/log4j.properties
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/conf/log4j.properties b/modules/distribution/airavata-server/src/main/resources/conf/log4j.properties
deleted file mode 100644
index f10bf8f..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/log4j.properties
+++ /dev/null
@@ -1,41 +0,0 @@
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-# Set root category priority to INFO and its only appender to CONSOLE.
-log4j.rootCategory=INFO, CONSOLE,LOGFILE
-log4j.rootLogger=INFO, CONSOLE, LOGFILE
-
-# Set the enterprise logger priority to FATAL
-log4j.logger.org.apache.axis2.enterprise=FATAL
-log4j.logger.org.apache.airavata=DEBUG
-log4j.logger.de.hunsicker.jalopy.io=FATAL
-log4j.logger.httpclient.wire.header=FATAL
-log4j.logger.org.apache.commons.httpclient=FATAL
-
-# CONSOLE is set to be a ConsoleAppender using a PatternLayout.
-log4j.appender.CONSOLE=org.apache.log4j.ConsoleAppender
-log4j.appender.CONSOLE.layout=org.apache.log4j.PatternLayout
-log4j.appender.CONSOLE.layout.ConversionPattern=[%p] %m%n
-
-# LOGFILE is set to be a File appender using a PatternLayout.
-log4j.appender.LOGFILE=org.apache.log4j.FileAppender
-log4j.appender.LOGFILE.File=airavata.log
-log4j.appender.LOGFILE.Append=true
-log4j.appender.LOGFILE.layout=org.apache.log4j.PatternLayout
-log4j.appender.LOGFILE.layout.ConversionPattern=%d [%t] %-5p %c %x - %m%n
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/war/INSTALL
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/war/INSTALL b/modules/distribution/airavata-server/src/main/resources/war/INSTALL
deleted file mode 100644
index 0324e61..0000000
--- a/modules/distribution/airavata-server/src/main/resources/war/INSTALL
+++ /dev/null
@@ -1,55 +0,0 @@
-Installing Apache Airavata 0.11
--------------------------------
-
-Prerequisites
--------------
-Java 1.5 or later
-Maven (tested on v 3.0.2)
-
-Build Apache Airavata from Source
----------------------------------
-* Unzip/untar the source file or check out from svn.
-* cd to project folder and type
- $ mvn clean install
- Note: in order to skip tests use the command
- $ mvn clean install -Dmaven.test.skip=true
-* The compressed binary distribution is created at <PROJECT DIR>/modules/distribution/airavata-server/target/apache-airavata-server-<airavata-version>-bin.zip
-
-Installing the Airavata Server
-------------------------------
-No installation is necessary. Just extract the compressed distribution.
-Note: For customizing the default configurations of the Airavata Server please
- refer to Airavata web-site (http://airavata.apache.org/) and/or Airavata
- mailing lists (http://airavata.apache.org/community/mailing-lists.html)
-
-Starting Apache Airavata Server
--------------------------------
-* Navigate to <AIRAVATA_HOME>/bin
-* type for following command to start the Airavata Server
- MAC/Unix systems
- $ sh airavata-server.sh
- Windows
- > airavata-server.bat
- Note: Pass "-h" as parameters to see more options when starting the server
-
-Starting Apache Derby Server
--------------------------------
-Users have the option to star the derby server separately
-* Navigate to <AIRAVATA_HOME>/bin
-* type for following command to start the Airavata Server
- MAC/Unix systems
- $ sh derby.sh
- Windows
- <Not supported in this version>
- Note: Pass "-h" as parameters to see more options when starting the server
-
-Running Tests
--------------
-Once the binary is unzipped, instructions to run the tests should be followed from README
-
-Tutorials
-----------
-The airavata website has instructions for basic tutorials:
-* For basic understanding of how Airavata works - http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
-* Describing and executing applications using Airavata - http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
-* Advanced tutorial to provide understanding of how to run sample workflows distributed with Airavata - http://airavata.apache.org/documentation/tutorials/advanced-workflow-samples.html
[4/5] https://issues.apache.org/jira/browse/AIRAVATA-1121 + disabling
some test cases that fail due to unsupported workflow for this version
Posted by sa...@apache.org.
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/axis2.xml
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/axis2.xml b/modules/configuration/server/src/main/resources/axis2.xml
new file mode 100644
index 0000000..7637700
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/axis2.xml
@@ -0,0 +1,533 @@
+<!-- ~ Licensed to the Apache Software Foundation (ASF) under one ~ or more
+ contributor license agreements. See the NOTICE file ~ distributed with this
+ work for additional information ~ regarding copyright ownership. The ASF
+ licenses this file ~ to you under the Apache License, Version 2.0 (the ~
+ "License"); you may not use this file except in compliance ~ with the License.
+ You may obtain a copy of the License at ~ ~ http://www.apache.org/licenses/LICENSE-2.0
+ ~ ~ Unless required by applicable law or agreed to in writing, ~ software
+ distributed under the License is distributed on an ~ "AS IS" BASIS, WITHOUT
+ WARRANTIES OR CONDITIONS OF ANY ~ KIND, either express or implied. See the
+ License for the ~ specific language governing permissions and limitations
+ ~ under the License. -->
+
+<axisconfig name="AxisJava2.0">
+ <!-- ================================================= -->
+ <!-- Parameters -->
+ <!-- ================================================= -->
+ <parameter name="hotdeployment">true</parameter>
+ <parameter name="hotupdate">false</parameter>
+ <parameter name="enableMTOM">false</parameter>
+ <parameter name="enableSwA">false</parameter>
+
+ <!--Uncomment if you want to enable file caching for attachments -->
+ <!--parameter name="cacheAttachments">true</parameter> <parameter name="attachmentDIR"></parameter>
+ <parameter name="sizeThreshold">4000</parameter -->
+
+ <!--Uncomment if you want to plugin your own attachments lifecycle implementation -->
+ <!--<attachmentsLifecycleManager class="org.apache.axiom.attachments.lifecycle.impl.LifecycleManagerImpl"/> -->
+
+
+ <!--Uncomment if you want to enable the reduction of the in-memory cache
+ of WSDL definitions -->
+ <!--In some server environments, the available memory heap is limited
+ and can fill up under load -->
+ <!--Since in-memory copies of WSDL definitions can be large, some steps
+ can be taken -->
+ <!--to reduce the memory needed for the cached WSDL definitions. -->
+ <!--parameter name="reduceWSDLMemoryCache">true</parameter -->
+
+ <!--This will give out the timout of the configuration contexts, in milliseconds -->
+ <parameter name="ConfigContextTimeoutInterval">30000</parameter>
+
+ <!--During a fault, stack trace can be sent with the fault message. The
+ following flag will control -->
+ <!--that behavior. -->
+ <parameter name="sendStacktraceDetailsWithFaults">false</parameter>
+
+ <!--If there aren't any information available to find out the fault reason,
+ we set the message of the exception -->
+ <!--as the faultreason/Reason. But when a fault is thrown from a service
+ or some where, it will be -->
+ <!--wrapped by different levels. Due to this the initial exception message
+ can be lost. If this flag -->
+ <!--is set, then Axis2 tries to get the first exception and set its message
+ as the faultreason/Reason. -->
+ <parameter name="DrillDownToRootCauseForFaultReason">false</parameter>
+
+ <parameter name="userName">admin</parameter>
+ <parameter name="password">axis2</parameter>
+
+ <!--To override repository/services you need to uncomment following parameter
+ and value SHOULD be absolute file path. -->
+ <!--ServicesDirectory only works on the following cases -->
+ <!---File based configurator and in that case the value should be a file
+ URL (http:// not allowed) -->
+ <!---When creating URL Based configurator with URL file:// -->
+ <!--- War based configurator with expanded case , -->
+
+ <!--All the other scenarios it will be ignored. -->
+ <!--<parameter name="ServicesDirectory">service</parameter> -->
+ <!--To override repository/modules you need to uncomment following parameter
+ and value SHOULD be absolute file path -->
+ <!--<parameter name="ModulesDirectory">modules</parameter> -->
+
+
+ <!--Following params will set the proper context paths for invocations.
+ All the endpoints will have a commons context -->
+ <!--root which can configured using the following contextRoot parameter -->
+ <!--<parameter name="contextRoot">axis2</parameter> -->
+
+ <!--Our HTTP endpoints can handle both REST and SOAP. Following parameters
+ can be used to distinguiush those endpoints -->
+ <!--In case of a servlet, if you change this you have to manually change
+ the settings of your servlet container to map this -->
+ <!--context path to proper Axis2 servlets -->
+ <!--<parameter name="servicePath">services</parameter> -->
+ <!--<parameter name="restPath">rest</parameter> -->
+
+ <!-- Following parameter will completely disable REST handling in Axis2 -->
+ <parameter name="disableREST" locked="false">false</parameter>
+
+ <!-- Following parameter will suppress generation of SOAP 1.2 bindings
+ in auto-generated WSDL files -->
+ <parameter name="disableSOAP12" locked="true">false</parameter>
+
+ <!--POJO deployer , this will alow users to drop .class file and make
+ that into a service -->
+ <deployer extension=".class" directory="pojo"
+ class="org.apache.axis2.deployment.POJODeployer" />
+ <deployer extension=".jar" directory="servicejars"
+ class="org.apache.axis2.jaxws.framework.JAXWSDeployer" />
+ <deployer extension=".jar" directory="transports"
+ class="org.apache.axis2.deployment.TransportDeployer" />
+
+ <!--CORBA deployer , this will alow users to invoke remote CORBA services
+ through Axis2 -->
+ <!--<deployer extension=".xml" directory="corba" class="org.apache.axis2.corba.deployer.CorbaDeployer"/> -->
+
+ <!--<deployer extension=".jsa" directory="rmiservices" class="org.apache.axis2.rmi.deploy.RMIServiceDeployer"/> -->
+
+
+ <!-- Following parameter will set the host name for the epr -->
+ <!--<parameter name="hostname" locked="true">myhost.com</parameter> -->
+
+ <!-- If you have a front end host which exposes this webservice using
+ a different public URL -->
+ <!-- use this parameter to override autodetected url -->
+ <!--<parameter name="httpFrontendHostUrl">https://someotherhost/context</parameter> -->
+
+
+ <!-- The way of adding listener to the system -->
+ <!-- <listener class="org.apache.axis2.ObserverIMPL"> -->
+ <!-- <parameter name="RSS_URL">http://127.0.0.1/rss</parameter> -->
+ <!-- </listener> -->
+
+ <threadContextMigrators>
+ <threadContextMigrator listId="JAXWS-ThreadContextMigrator-List"
+ class="org.apache.axis2.jaxws.addressing.migrator.EndpointContextMapMigrator" />
+ </threadContextMigrators>
+
+ <!-- ================================================= -->
+ <!-- Message Receivers -->
+ <!-- ================================================= -->
+ <!--This is the default MessageReceiver for the system , if you want
+ to have MessageReceivers for -->
+ <!--all the other MEP implement it and add the correct entry to here
+ , so that you can refer from -->
+ <!--any operation -->
+ <!--Note : You can override this for a particular service by adding the
+ same element with your requirement -->
+ <messageReceivers>
+ <messageReceiver mep="http://www.w3.org/2004/08/wsdl/in-only"
+ class="org.apache.axis2.receivers.RawXMLINOnlyMessageReceiver" />
+ <messageReceiver mep="http://www.w3.org/2004/08/wsdl/in-out"
+ class="org.apache.axis2.receivers.RawXMLINOutMessageReceiver" />
+ <messageReceiver mep="http://www.w3.org/2006/01/wsdl/in-only"
+ class="org.apache.axis2.receivers.RawXMLINOnlyMessageReceiver" />
+ <messageReceiver mep="http://www.w3.org/2006/01/wsdl/in-out"
+ class="org.apache.axis2.receivers.RawXMLINOutMessageReceiver" />
+ <messageReceiver mep="http://www.w3.org/ns/wsdl/in-only"
+ class="org.apache.axis2.receivers.RawXMLINOnlyMessageReceiver" />
+ <messageReceiver mep="http://www.w3.org/ns/wsdl/in-out"
+ class="org.apache.axis2.receivers.RawXMLINOutMessageReceiver" />
+ </messageReceivers>
+
+ <!-- ================================================= -->
+ <!-- Message Formatter -->
+ <!-- ================================================= -->
+ <!--Following content type to message formatter mapping can be used to
+ implement support for different message -->
+ <!--format serialization in Axis2. These message formats are expected
+ to be resolved based on the content type. -->
+ <messageFormatters>
+ <messageFormatter contentType="application/x-www-form-urlencoded"
+ class="org.apache.axis2.transport.http.XFormURLEncodedFormatter" />
+ <messageFormatter contentType="multipart/form-data"
+ class="org.apache.axis2.transport.http.MultipartFormDataFormatter" />
+ <messageFormatter contentType="application/xml"
+ class="org.apache.axis2.transport.http.ApplicationXMLFormatter" />
+ <messageFormatter contentType="text/xml"
+ class="org.apache.axis2.transport.http.SOAPMessageFormatter" />
+ <messageFormatter contentType="application/soap+xml"
+ class="org.apache.axis2.transport.http.SOAPMessageFormatter" />
+ <messageFormatter contentType="application/json"
+ class="org.apache.airavata.json.StaxonJSONFormatter"/>
+ </messageFormatters>
+
+ <!-- ================================================= -->
+ <!-- Message Builders -->
+ <!-- ================================================= -->
+ <!--Following content type to builder mapping can be used to implement
+ support for different message -->
+ <!--formats in Axis2. These message formats are expected to be resolved
+ based on the content type. -->
+ <messageBuilders>
+ <messageBuilder contentType="application/xml"
+ class="org.apache.axis2.builder.ApplicationXMLBuilder" />
+ <messageBuilder contentType="application/x-www-form-urlencoded"
+ class="org.apache.axis2.builder.XFormURLEncodedBuilder" />
+ <messageBuilder contentType="multipart/form-data"
+ class="org.apache.axis2.builder.MultipartFormDataBuilder" />
+ <messageBuilder contentType="application/json"
+ class="org.apache.airavata.json.StaxonJSONBuilder"/>
+ </messageBuilders>
+
+ <!-- ================================================= -->
+ <!-- Transport Ins -->
+ <!-- ================================================= -->
+ <transportReceiver name="http"
+ class="org.apache.axis2.transport.http.SimpleHTTPServer">
+ <parameter name="port">8080</parameter>
+ <!-- Here is the complete list of supported parameters (see example
+ settings further below): port: the port to listen on (default 6060) hostname:
+ if non-null, url prefix used in reply-to endpoint references (default null)
+ originServer: value of http Server header in outgoing messages (default "Simple-Server/1.1")
+ requestTimeout: value in millis of time that requests can wait for data (default
+ 20000) requestTcpNoDelay: true to maximize performance and minimize latency
+ (default true) false to minimize bandwidth consumption by combining segments
+ requestCoreThreadPoolSize: number of threads available for request processing
+ (unless queue fills up) (default 25) requestMaxThreadPoolSize: number of
+ threads available for request processing if queue fills up (default 150)
+ note that default queue never fills up: see HttpFactory threadKeepAliveTime:
+ time to keep threads in excess of core size alive while inactive (default
+ 180) note that no such threads can exist with default unbounded request queue
+ threadKeepAliveTimeUnit: TimeUnit of value in threadKeepAliveTime (default
+ SECONDS) (default SECONDS) -->
+ <!-- <parameter name="hostname">http://www.myApp.com/ws</parameter> -->
+ <!-- <parameter name="originServer">My-Server/1.1</parameter> -->
+ <!-- <parameter name="requestTimeout">10000</parameter> -->
+ <!-- <parameter name="requestTcpNoDelay">false</parameter> -->
+ <!-- <parameter name="requestCoreThreadPoolSize">50</parameter> -->
+ <!-- <parameter name="requestMaxThreadPoolSize">100</parameter> -->
+ <!-- <parameter name="threadKeepAliveTime">240000</parameter> -->
+ <!-- <parameter name="threadKeepAliveTimeUnit">MILLISECONDS</parameter> -->
+ </transportReceiver>
+
+ <!--Uncomment if you want to have TCP transport support -->
+ <!--transportReceiver name="tcp" class="org.apache.axis2.transport.tcp.TCPServer">
+ <parameter name="port">6060</parameter -->
+ >
+ <!--If you want to give your own host address for EPR generation -->
+ <!--uncomment the following paramter , and set it as you required. -->
+ <!--<parameter name="hostname">tcp://myApp.com/ws</parameter> -->
+ <!-- /transportReceiver -->
+
+ <!-- ================================================= -->
+ <!-- Transport Outs -->
+ <!-- ================================================= -->
+
+ <!--Uncomment if you want to have TCP transport support -->
+ <!-- <transportSender name="tcp" class="org.apache.axis2.transport.tcp.TCPTransportSender"/> -->
+ <transportSender name="local"
+ class="org.apache.axis2.transport.local.LocalTransportSender" />
+ <transportSender name="http"
+ class="org.apache.axis2.transport.http.CommonsHTTPTransportSender">
+ <parameter name="PROTOCOL">HTTP/1.1</parameter>
+ <parameter name="Transfer-Encoding">chunked</parameter>
+
+ <!-- If following is set to 'true', optional action part of the Content-Type
+ will not be added to the SOAP 1.2 messages -->
+ <!-- <parameter name="OmitSOAP12Action">true</parameter> -->
+ </transportSender>
+
+ <transportSender name="https"
+ class="org.apache.axis2.transport.http.CommonsHTTPTransportSender">
+ <parameter name="PROTOCOL">HTTP/1.1</parameter>
+ <parameter name="Transfer-Encoding">chunked</parameter>
+ </transportSender>
+
+ <!-- Please enable this if you need the java transport -->
+ <!-- <transportSender name="java" class="org.apache.axis2.transport.java.JavaTransportSender"/> -->
+
+ <!-- ================================================= -->
+ <!-- Global Modules -->
+ <!-- ================================================= -->
+ <!-- Comment this to disable Addressing -->
+ <module ref="addressing" />
+
+ <!--Configuring module , providing parameters for modules whether they
+ refer or not -->
+ <!--<moduleConfig name="addressing"> -->
+ <!--<parameter name="addressingPara">N/A</parameter> -->
+ <!--</moduleConfig> -->
+
+ <!-- ================================================= -->
+ <!-- Clustering -->
+ <!-- ================================================= -->
+ <!-- To enable clustering for this node, set the value of "enable" attribute
+ of the "cluster" element to "true". The initilization of a node in the cluster
+ is handled by the class corresponding to the "class" attribute of the "cluster"
+ element. It is also responsible for getting this node to join the cluster. -->
+ <cluster class="org.apache.axis2.clustering.tribes.TribesClusterManager"
+ enable="false">
+
+ <!-- This parameter indicates whther the cluster has to be automatically
+ initalized when the AxisConfiguration is built. If set to "true" the initialization
+ will not be done at that stage, and some other party will have to explictly
+ initialize the cluster. -->
+ <parameter name="AvoidInitiation">true</parameter>
+
+ <!-- Indicates whether this member is active or not. This will be
+ useful in a setup where members are deployed in ACTIVE and/or PASSIVE configuration -->
+ <parameter name="isActive">true</parameter>
+
+ <!-- An implementation of org.apache.axis2.clustering.MembershipListener
+ which will be called on membership changes -->
+ <!-- <parameter name="membershipListener"> <class>org.apache.axis2.clustering.MembershipListenerImpl</class>
+ <properties> <property name="foo">bar</property> </properties> </parameter> -->
+
+ <!-- The membership scheme used in this setup. The only values supported
+ at the moment are "multicast" and "wka" 1. multicast - membership is automatically
+ discovered using multicasting 2. wka - Well-Known Address based multicasting.
+ Membership is discovered with the help of one or more nodes running at a
+ Well-Known Address. New members joining a cluster will first connect to a
+ well-known node, register with the well-known node and get the membership
+ list from it. When new members join, one of the well-known nodes will notify
+ the others in the group. When a member leaves the cluster or is deemed to
+ have left the cluster, it will be detected by the Group Membership Service
+ (GMS) using a TCP ping mechanism. -->
+ <parameter name="membershipScheme">multicast</parameter>
+
+ <!-- The clustering domain/group. Nodes in the same group will belong
+ to the same multicast domain. There will not be interference between nodes
+ in different groups. -->
+ <parameter name="domain">apache.axis2.domain</parameter>
+
+ <!-- This parameter is only valid when the "mode" parameter is set
+ to application. This indicates the domain in which the the applications being
+ load balanced are deployed. -->
+ <parameter name="applicationDomain">apache.axis2.application.domain
+ </parameter>
+
+ <!-- When a Web service request is received, and processed, before
+ the response is sent to the client, should we update the states of all members
+ in the cluster? If the value of this parameter is set to "true", the response
+ to the client will be sent only after all the members have been updated.
+ Obviously, this can be time consuming. In some cases, such this overhead
+ may not be acceptable, in which case the value of this parameter should be
+ set to "false" -->
+ <parameter name="synchronizeAll">true</parameter>
+
+ <!-- The maximum number of times we need to retry to send a message
+ to a particular node before giving up and considering that node to be faulty -->
+ <parameter name="maxRetries">10</parameter>
+
+ <!-- The multicast address to be used -->
+ <parameter name="mcastAddress">228.0.0.4</parameter>
+
+ <!-- The multicast port to be used -->
+ <parameter name="mcastPort">45564</parameter>
+
+ <!-- The frequency of sending membership multicast messages (in ms) -->
+ <parameter name="mcastFrequency">500</parameter>
+
+ <!-- The time interval within which if a member does not respond,
+ the member will be deemed to have left the group (in ms) -->
+ <parameter name="memberDropTime">3000</parameter>
+
+ <!-- The IP address of the network interface to which the multicasting
+ has to be bound to. Multicasting would be done using this interface. -->
+ <parameter name="mcastBindAddress">127.0.0.1</parameter>
+
+ <!-- The host name or IP address of this member -->
+ <parameter name="localMemberHost">127.0.0.1</parameter>
+
+ <!-- The TCP port used by this member. This is the port through which
+ other nodes will contact this member -->
+ <parameter name="localMemberPort">4000</parameter>
+
+ <!-- Preserve message ordering. This will be done according to sender
+ order. -->
+ <parameter name="preserveMessageOrder">true</parameter>
+
+ <!-- Maintain atmost-once message processing semantics -->
+ <parameter name="atmostOnceMessageSemantics">true</parameter>
+
+ <!-- The list of static or well-known members. These entries will
+ only be valid if the "membershipScheme" above is set to "wka" -->
+ <members>
+ <member>
+ <hostName>127.0.0.1</hostName>
+ <port>4000</port>
+ </member>
+ <member>
+ <hostName>127.0.0.1</hostName>
+ <port>4001</port>
+ </member>
+ </members>
+
+ <!-- Enable the load balancer entry if you need to run this node
+ as a load balancer. Multiple application domains with different LoadBalanceEventHandler
+ implementations can be defined in this section. -->
+ <loadBalancer enable="false">
+ <applicationDomain name="apache.axis2.application.domain"
+ handler="org.apache.axis2.clustering.DefaultLoadBalanceEventHandler" />
+ </loadBalancer>
+
+ <!-- This interface is responsible for handling configuration management.
+ Configuraion changes include: 1. Rebooting an entire cluster, in which case,
+ all nodes have to load the new Axis2 configuration in a consistent manner
+ 2. Deploying a new service to a cluster or undeploying a service from a cluster
+ 3. Changing the policies of a service deployed on the cluster The "enable"
+ attribute indicates whether Configuration management has been enabled -->
+ <configurationManager
+ class="org.apache.axis2.clustering.configuration.DefaultConfigurationManager"
+ enable="true">
+ <listener
+ class="org.apache.axis2.clustering.configuration.DefaultConfigurationManagerListener" />
+ </configurationManager>
+
+ <!-- This interface is responsible for handling context replication.
+ The property changes in the Axis2 context hierarchy in this node, are propagated
+ to all other nodes in the cluster. The "excludes" patterns can be used to
+ specify the prefixes (e.g. local_*) or suffixes (e.g. *_local) of the properties
+ to be excluded from replication. The pattern "*" indicates that all properties
+ in a particular context should not be replicated. The "enable" attribute
+ indicates whether context replication has been enabled -->
+ <contextManager
+ class="org.apache.axis2.clustering.context.DefaultContextManager"
+ enable="true">
+ <listener
+ class="org.apache.axis2.clustering.context.DefaultContextManagerListener" />
+ <replication>
+ <defaults>
+ <exclude name="local_*" />
+ <exclude name="LOCAL_*" />
+ </defaults>
+ <context class="org.apache.axis2.context.ConfigurationContext">
+ <exclude name="UseAsyncOperations" />
+ <exclude name="SequencePropertyBeanMap" />
+ </context>
+ <context class="org.apache.axis2.context.ServiceGroupContext">
+ <exclude name="my.sandesha.*" />
+ </context>
+ <context class="org.apache.axis2.context.ServiceContext">
+ <exclude name="my.sandesha.*" />
+ </context>
+ </replication>
+ </contextManager>
+ </cluster>
+
+ <!-- ================================================= -->
+ <!-- Phases -->
+ <!-- ================================================= -->
+ <phaseOrder type="InFlow">
+ <!-- System predefined phases -->
+ <phase name="Transport">
+ <handler name="RequestURIBasedDispatcher"
+ class="org.apache.axis2.dispatchers.RequestURIBasedDispatcher">
+ <order phase="Transport" />
+ </handler>
+ <handler name="SOAPActionBasedDispatcher"
+ class="org.apache.axis2.dispatchers.SOAPActionBasedDispatcher">
+ <order phase="Transport" />
+ </handler>
+ </phase>
+ <phase name="Addressing">
+ <handler name="AddressingBasedDispatcher"
+ class="org.apache.axis2.dispatchers.AddressingBasedDispatcher">
+ <order phase="Addressing" />
+ </handler>
+ </phase>
+ <phase name="Security" />
+ <phase name="PreDispatch" />
+ <phase name="Dispatch" class="org.apache.axis2.engine.DispatchPhase">
+ <handler name="RequestURIBasedDispatcher"
+ class="org.apache.axis2.dispatchers.RequestURIBasedDispatcher" />
+ <handler name="SOAPActionBasedDispatcher"
+ class="org.apache.axis2.dispatchers.SOAPActionBasedDispatcher" />
+ <handler name="RequestURIOperationDispatcher"
+ class="org.apache.axis2.dispatchers.RequestURIOperationDispatcher" />
+ <handler name="SOAPMessageBodyBasedDispatcher"
+ class="org.apache.axis2.dispatchers.SOAPMessageBodyBasedDispatcher" />
+ <handler name="HTTPLocationBasedDispatcher"
+ class="org.apache.axis2.dispatchers.HTTPLocationBasedDispatcher" />
+ <handler name="GenericProviderDispatcher"
+ class="org.apache.axis2.jaxws.dispatchers.GenericProviderDispatcher" />
+ <handler name="MustUnderstandValidationDispatcher"
+ class="org.apache.axis2.jaxws.dispatchers.MustUnderstandValidationDispatcher" />
+ </phase>
+ <phase name="RMPhase" />
+ <!-- System predefined phases -->
+ <!-- After Postdispatch phase module author or service author can
+ add any phase he want -->
+ <phase name="OperationInPhase">
+ <handler name="MustUnderstandChecker"
+ class="org.apache.axis2.jaxws.dispatchers.MustUnderstandChecker">
+ <order phase="OperationInPhase" />
+ </handler>
+ </phase>
+ <phase name="soapmonitorPhase" />
+ </phaseOrder>
+ <phaseOrder type="OutFlow">
+ <!-- user can add his own phases to this area -->
+ <phase name="soapmonitorPhase" />
+ <phase name="OperationOutPhase" />
+ <!--system predefined phase -->
+ <!--these phase will run irrespective of the service -->
+ <phase name="RMPhase" />
+ <phase name="PolicyDetermination" />
+ <phase name="MessageOut" />
+ <phase name="Security" />
+ </phaseOrder>
+ <phaseOrder type="InFaultFlow">
+ <phase name="Addressing">
+ <handler name="AddressingBasedDispatcher"
+ class="org.apache.axis2.dispatchers.AddressingBasedDispatcher">
+ <order phase="Addressing" />
+ </handler>
+ </phase>
+ <phase name="Security" />
+ <phase name="PreDispatch" />
+ <phase name="Dispatch" class="org.apache.axis2.engine.DispatchPhase">
+ <handler name="RequestURIBasedDispatcher"
+ class="org.apache.axis2.dispatchers.RequestURIBasedDispatcher" />
+ <handler name="SOAPActionBasedDispatcher"
+ class="org.apache.axis2.dispatchers.SOAPActionBasedDispatcher" />
+ <handler name="RequestURIOperationDispatcher"
+ class="org.apache.axis2.dispatchers.RequestURIOperationDispatcher" />
+ <handler name="SOAPMessageBodyBasedDispatcher"
+ class="org.apache.axis2.dispatchers.SOAPMessageBodyBasedDispatcher" />
+ <handler name="HTTPLocationBasedDispatcher"
+ class="org.apache.axis2.dispatchers.HTTPLocationBasedDispatcher" />
+ <handler name="GenericProviderDispatcher"
+ class="org.apache.axis2.jaxws.dispatchers.GenericProviderDispatcher" />
+ <handler name="MustUnderstandValidationDispatcher"
+ class="org.apache.axis2.jaxws.dispatchers.MustUnderstandValidationDispatcher" />
+ </phase>
+ <phase name="RMPhase" />
+ <!-- user can add his own phases to this area -->
+ <phase name="OperationInFaultPhase" />
+ <phase name="soapmonitorPhase" />
+ </phaseOrder>
+ <phaseOrder type="OutFaultFlow">
+ <!-- user can add his own phases to this area -->
+ <phase name="soapmonitorPhase" />
+ <phase name="OperationOutFaultPhase" />
+ <phase name="RMPhase" />
+ <phase name="PolicyDetermination" />
+ <phase name="MessageOut" />
+ <phase name="Security" />
+ </phaseOrder>
+</axisconfig>
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/gfac-config.xml
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/gfac-config.xml b/modules/configuration/server/src/main/resources/gfac-config.xml
new file mode 100644
index 0000000..0607e49
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/gfac-config.xml
@@ -0,0 +1,101 @@
+<!-- ~ Licensed to the Apache Software Foundation (ASF) under one ~ or more
+ contributor license agreements. See the NOTICE file ~ distributed with this
+ work for additional information ~ regarding copyright ownership. The ASF
+ licenses this file ~ to you under the Apache License, Version 2.0 (the ~
+ "License"); you may not use this file except in compliance ~ with the License.
+ You may obtain a copy of the License at ~ ~ http://www.apache.org/licenses/LICENSE-2.0
+ ~ ~ Unless required by applicable law or agreed to in writing, ~ software
+ distributed under the License is distributed on an ~ "AS IS" BASIS, WITHOUT
+ WARRANTIES OR CONDITIONS OF ANY ~ KIND, either express or implied. See the
+ License for the ~ specific language governing permissions and limitations
+ ~ under the License. -->
+
+<GFac>
+ <GlobalHandlers>
+ <InHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.AppDescriptorCheckHandler">
+ <property name="name" value="value"/>
+ </Handler>
+ </InHandlers>
+ <OutHandlers></OutHandlers>
+ </GlobalHandlers>
+ <Provider class="org.apache.airavata.gfac.provider.impl.LocalProvider" host="org.apache.airavata.schemas.gfac.impl.HostDescriptionTypeImpl">
+ <InHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.LocalDirectorySetupHandler"/>
+ </InHandlers>
+ </Provider>
+ <Provider class="org.apache.airavata.gfac.provider.impl.GramProvider" host="org.apache.airavata.schemas.gfac.impl.GlobusHostTypeImpl">
+ <property name="name" value="value"/>
+ <InHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.GramDirectorySetupHandler">
+ <property name="name" value="value"/>
+ </Handler>
+ <Handler class="org.apache.airavata.gfac.handler.GridFTPInputHandler"/>
+ </InHandlers>
+ <OutHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.GridFTPOutputHandler"/>
+ </OutHandlers>
+ </Provider>
+ <Provider class="org.apache.airavata.gfac.provider.impl.BESProvider" host="org.apache.airavata.schemas.gfac.impl.UnicoreHostTypeImpl">
+ </Provider>
+
+ <Provider class="org.apache.airavata.gfac.ec2.EC2Provider" host="org.apache.airavata.schemas.gfac.impl.Ec2HostTypeImpl">
+ <InHandlers/>
+ <OutHandlers/>
+ </Provider>
+
+ <Provider class="org.apache.airavata.gfac.provider.impl.HadoopProvider" host="org.apache.airavata.schemas.gfac.impl.HadoopHostTypeImpl">
+ <InHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.HadoopDeploymentHandler"/>
+ <Handler class="org.apache.airavata.gfac.handler.HDFSDataMovementHandler"/>
+ </InHandlers>
+ <OutHandlers/>
+ </Provider>
+
+ <Application name="UltraScan">
+ <InHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.GramDirectorySetupHandler"/>
+ <Handler class="org.apache.airavata.gfac.handler.GridFTPInputHandler"/>
+ </InHandlers>
+ <OutHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.GridFTPOutputHandler"/>
+ </OutHandlers>
+ </Application>
+
+ <Provider class="org.apache.airavata.gfac.provider.impl.SSHProvider" host="org.apache.airavata.schemas.gfac.impl.SSHHostTypeImpl">
+ <InHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.SCPDirectorySetupHandler"/>
+ <Handler class="org.apache.airavata.gfac.handler.SCPInputHandler"/>
+ </InHandlers>
+ <OutHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.SCPOutputHandler"/>
+ </OutHandlers>
+ </Provider>
+ <Provider class="org.apache.airavata.gfac.provider.impl.GSISSHProvider" host="org.apache.airavata.schemas.gfac.impl.GsisshHostTypeImpl">
+ <InHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.SCPDirectorySetupHandler"/>
+ <!--Handler class="org.apache.airavata.gfac.handler.AdvancedSCPInputHandler">
+ <property name="privateKeyPath" value="/Users/lahirugunathilake/.ssh/id_dsa"/>
+ <property name="publicKeyPath" value="/Users/lahirugunathilake/.ssh/id_dsa.pub"/>
+ <property name="userName" value="root"/>
+ <property name="hostName" value="gw98.iu.xsede.org"/>
+ <property name="inputPath" value="/tmp"/>
+ <property name="passPhrase" value="/home/airavata/outputData"/>
+ <property name="password" value="/home/airavata/outputData"/> <either we have to set password or keys, password has higher preference>
+ </Handler-->
+ <Handler class="org.apache.airavata.gfac.handler.SCPInputHandler"/>
+ </InHandlers>
+ <OutHandlers>
+ <Handler class="org.apache.airavata.gfac.handler.SCPOutputHandler"/>
+ <!--Handler class="org.apache.airavata.gfac.handler.AdvancedSCPOutputHandler">
+ <property name="privateKeyPath" value="/Users/lahirugunathilake/.ssh/id_dsa"/>
+ <property name="publicKeyPath" value="/Users/lahirugunathilake/.ssh/id_dsa.pub"/>
+ <property name="userName" value="root"/>
+ <property name="hostName" value="gw111.iu.xsede.org"/>
+ <property name="outputPath" value="/tmp"/>
+ <property name="passPhrase" value="/home/airavata/outputData"/>
+ <property name="password" value="/home/airavata/outputData"/> <either we have to set password or keys, password has higher preference>
+ </Handler-->
+ </OutHandlers>
+ </Provider>
+</GFac>
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/gsissh.properties
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/gsissh.properties b/modules/configuration/server/src/main/resources/gsissh.properties
new file mode 100644
index 0000000..3fdf76d
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/gsissh.properties
@@ -0,0 +1,26 @@
+#
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+###########################################################################
+# Specifies system level configurations as a key/value pairs.
+###########################################################################
+
+StrictHostKeyChecking=no
+ssh.session.timeout=360000
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/host.xml
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/host.xml b/modules/configuration/server/src/main/resources/host.xml
new file mode 100644
index 0000000..8e57765
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/host.xml
@@ -0,0 +1,86 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!-- ~ Licensed to the Apache Software Foundation (ASF) under one ~ or more
+ contributor license agreements. See the NOTICE file ~ distributed with this
+ work for additional information ~ regarding copyright ownership. The ASF
+ licenses this file ~ to you under the Apache License, Version 2.0 (the ~
+ "License"); you may not use this file except in compliance ~ with the License.
+ You may obtain a copy of the License at ~ ~ http://www.apache.org/licenses/LICENSE-2.0
+ ~ ~ Unless required by applicable law or agreed to in writing, ~ software
+ distributed under the License is distributed on an ~ "AS IS" BASIS, WITHOUT
+ WARRANTIES OR CONDITIONS OF ANY ~ KIND, either express or implied. See the
+ License for the ~ specific language governing permissions and limitations
+ ~ under the License. -->
+
+<servers>
+ <server>
+ <type>local</type>
+ <name>LocalHost</name>
+ <host>127.0.0.1</host>
+ </server>
+ <!-- Test jobs for steele and forge.
+ <server>
+ <name>steele.purdue.teragrid.org</name>
+ <host>steele.purdue.teragrid.org</host>
+ <gram.endpoint>tg-steele.rcac.purdue.edu:2119/jobmanager-pbs</gram.endpoint>
+ <gridftp.endpoint>gsiftp://tg-data.purdue.teragrid.org:2811/</gridftp.endpoint>
+ </server>
+
+ <server>
+ <name>forge.ncsa.teragrid.org</name>
+ <host>forge.ncsa.teragrid.org</host>
+ <gram.endpoint>grid-forge.ncsa.xsede.org:2119/jobmanager-pbs</gram.endpoint>
+ <gridftp.endpoint>gsiftp://gridftp-forge.ncsa.xsede.org:2811/</gridftp.endpoint>
+ </server>
+ -->
+ <server>
+ <name>globus-lonestar</name>
+ <type>globus</type>
+ <host>lonestar4.tacc.teragrid.org</host>
+ <gram.endpoint>gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge</gram.endpoint>
+ <gridftp.endpoint>gsiftp://gridftp1.ls4.tacc.utexas.edu:2811/</gridftp.endpoint>
+ </server>
+
+ <server>
+ <name>globus-stampede</name>
+ <type>globus</type>
+ <monitor host="stampede.tacc.utexas.edu">
+ <primary>org.apache.airavata.monitor.impl.AMQPMonitor</primary>
+ <secondary>org.apache.airavata.monitor.impl.GramMonitor</secondary>
+ </monitor>
+ <monitor hostType="SSHHostTypeImpl">
+ <primary>org.apache.airavata.monitor.impl.MoabMonitor</primary>
+ <secondary>org.apache.airavata.monitor.impl.QstatMonitor</secondary>
+ </monitor>
+ <host>stampede.tacc.utexas.edu</host>
+ <gram.endpoint>login5.stampede.tacc.utexas.edu:2119/jobmanager-slurm3</gram.endpoint>
+ <gridftp.endpoint>gsiftp://data1.stampede.tacc.utexas.edu:2811/</gridftp.endpoint>
+ </server>
+
+ <server>
+ <name>globus-trestles</name>
+ <type>globus</type>
+ <host>trestles.sdsc.edu</host>
+ <gram.endpoint>trestles-login2.sdsc.edu:2119/jobmanager-pbstest2</gram.endpoint>
+ <gridftp.endpoint>gsiftp://trestles-dm1.sdsc.edu:2811/</gridftp.endpoint>
+ </server>
+ <server>
+ <type>ssh</type>
+ <name>bigred2</name>
+ <host>bigred2.uits.iu.edu</host>
+ <hpc.resource>true</hpc.resource>
+ </server>
+ <server>
+ <type>gsissh</type>
+ <name>gsissh-trestles</name>
+ <host>trestles.sdsc.edu</host>
+ </server>
+ <!--
+ <server>
+ <name>kraken</name>
+ <host>gsissh.kraken.nics.xsede.org</host>
+ <gram.endpoint>grid.nics.xsede.org:2119/jobmanager-pbs</gram.endpoint>
+ <gridftp.endpoint>gsiftp://gridftp.kraken.nics.xsede.org:2811/</gridftp.endpoint>
+ </server> -->
+
+</servers>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/configuration/server/src/main/resources/log4j.properties
----------------------------------------------------------------------
diff --git a/modules/configuration/server/src/main/resources/log4j.properties b/modules/configuration/server/src/main/resources/log4j.properties
new file mode 100644
index 0000000..f10bf8f
--- /dev/null
+++ b/modules/configuration/server/src/main/resources/log4j.properties
@@ -0,0 +1,41 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+# Set root category priority to INFO and its only appender to CONSOLE.
+log4j.rootCategory=INFO, CONSOLE,LOGFILE
+log4j.rootLogger=INFO, CONSOLE, LOGFILE
+
+# Set the enterprise logger priority to FATAL
+log4j.logger.org.apache.axis2.enterprise=FATAL
+log4j.logger.org.apache.airavata=DEBUG
+log4j.logger.de.hunsicker.jalopy.io=FATAL
+log4j.logger.httpclient.wire.header=FATAL
+log4j.logger.org.apache.commons.httpclient=FATAL
+
+# CONSOLE is set to be a ConsoleAppender using a PatternLayout.
+log4j.appender.CONSOLE=org.apache.log4j.ConsoleAppender
+log4j.appender.CONSOLE.layout=org.apache.log4j.PatternLayout
+log4j.appender.CONSOLE.layout.ConversionPattern=[%p] %m%n
+
+# LOGFILE is set to be a File appender using a PatternLayout.
+log4j.appender.LOGFILE=org.apache.log4j.FileAppender
+log4j.appender.LOGFILE.File=airavata.log
+log4j.appender.LOGFILE.Append=true
+log4j.appender.LOGFILE.layout=org.apache.log4j.PatternLayout
+log4j.appender.LOGFILE.layout.ConversionPattern=%d [%t] %-5p %c %x - %m%n
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-client/pom.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-client/pom.xml b/modules/distribution/airavata-client/pom.xml
index b7bb975..b1d03bd 100644
--- a/modules/distribution/airavata-client/pom.xml
+++ b/modules/distribution/airavata-client/pom.xml
@@ -24,11 +24,31 @@
<build>
<plugins>
- <!--plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-dependency-plugin</artifactId> <version>2.4</version>
- <inherited>false</inherited> <executions> <execution> <id>unpack-axis2</id> <phase>package</phase> <goals> <goal>unpack</goal>
- </goals> <configuration> <artifactItems> <artifactItem> <groupId>org.apache.axis2</groupId> <artifactId>axis2-webapp</artifactId>
- <version>${axis2.version}</version> <type>war</type> <overWrite>true</overWrite> <outputDirectory>target/axis2-${axis2.version}</outputDirectory>
- </artifactItem> </artifactItems> </configuration> </execution> </executions> </plugin -->
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-dependency-plugin</artifactId>
+ <version>2.8</version>
+ <executions>
+ <execution>
+ <id>unpack</id>
+ <phase>compile</phase>
+ <goals>
+ <goal>unpack</goal>
+ </goals>
+ <configuration>
+ <artifactItems>
+ <artifactItem>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-client-configuration</artifactId>
+ <version>${project.version}</version>
+ <type>jar</type>
+ </artifactItem>
+ </artifactItems>
+ <outputDirectory>${project.build.directory}/conf</outputDirectory>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-client/src/main/assembly/bin-assembly.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-client/src/main/assembly/bin-assembly.xml b/modules/distribution/airavata-client/src/main/assembly/bin-assembly.xml
index 2f84399..aa42b07 100644
--- a/modules/distribution/airavata-client/src/main/assembly/bin-assembly.xml
+++ b/modules/distribution/airavata-client/src/main/assembly/bin-assembly.xml
@@ -51,7 +51,13 @@
<include>INSTALL</include>
</includes>
</fileSet>
-
+ <fileSet>
+ <directory>${project.build.directory}/conf</directory>
+ <outputDirectory>conf</outputDirectory>
+ <includes>
+ <include>*.properties</include>
+ </includes>
+ </fileSet>
<fileSet>
<directory>../../../samples/airavata-client</directory>
<outputDirectory>samples</outputDirectory>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-client/src/main/resources/conf/airavata-client.properties
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-client/src/main/resources/conf/airavata-client.properties b/modules/distribution/airavata-client/src/main/resources/conf/airavata-client.properties
deleted file mode 100644
index 2a463b1..0000000
--- a/modules/distribution/airavata-client/src/main/resources/conf/airavata-client.properties
+++ /dev/null
@@ -1,77 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-#
-# This properties file provides configuration for Airavata Clients:
-# XBaya and Airavata API
-#
-###########################################################################
-
-###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
-
-class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
-
-###---------------------REGISTRY API IMPLEMENTATION - CUSTOM SETTINGS----------------------###
-
-########################Registry JPA Implementation Settings########################
-#for mysql [AiravataJPARegistry]
-#registry.jdbc.driver=com.mysql.jdbc.Driver
-#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
-
-#for derby [AiravataJPARegistry]
-registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
-registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
-registry.jdbc.user=airavata
-registry.jdbc.password=airavata
-start.derby.server.mode=true
-
-
-validationQuery=SELECT 1 from CONFIGURATION
-jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
-defauly.registry.user=admin
-default.registry.password=admin
-default.registry.password.hash.method=SHA
-default.registry.gateway=default
-
-#user defined registry accessor classes
-#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-
-########################Registry Rest Implementation Settings########################
-
-trust.store=aiaravata.jks
-trust.store.password=airavata
-
-#####################################################################################
-
-#for xbaya
-xbaya.registry.user=admin
-xbaya.registry.url=http://localhost:8080/airavata/services/registry
-xbaya.default.gateway=default
-
-
-
-
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-client/src/main/resources/conf/log4j.properties
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-client/src/main/resources/conf/log4j.properties b/modules/distribution/airavata-client/src/main/resources/conf/log4j.properties
deleted file mode 100644
index ee40d6f..0000000
--- a/modules/distribution/airavata-client/src/main/resources/conf/log4j.properties
+++ /dev/null
@@ -1,40 +0,0 @@
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-# Set root category priority to INFO and its only appender to CONSOLE.
-log4j.rootCategory=INFO, CONSOLE,LOGFILE
-log4j.rootLogger=INFO, CONSOLE, LOGFILE
-
-# Set the enterprise logger priority to FATAL
-log4j.logger.org.apache.axis2.enterprise=FATAL
-log4j.logger.de.hunsicker.jalopy.io=FATAL
-log4j.logger.httpclient.wire.header=FATAL
-log4j.logger.org.apache.commons.httpclient=FATAL
-
-# CONSOLE is set to be a ConsoleAppender using a PatternLayout.
-log4j.appender.CONSOLE=org.apache.log4j.ConsoleAppender
-log4j.appender.CONSOLE.layout=org.apache.log4j.PatternLayout
-log4j.appender.CONSOLE.layout.ConversionPattern=[%p] %m%n
-
-# LOGFILE is set to be a File appender using a PatternLayout.
-log4j.appender.LOGFILE=org.apache.log4j.FileAppender
-log4j.appender.LOGFILE.File=../../bin/axis2.log
-log4j.appender.LOGFILE.Append=true
-log4j.appender.LOGFILE.layout=org.apache.log4j.PatternLayout
-log4j.appender.LOGFILE.layout.ConversionPattern=%d [%t] %-5p %c %x - %m%n
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/pom.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/pom.xml b/modules/distribution/airavata-server/pom.xml
index d7a1644..6629860 100644
--- a/modules/distribution/airavata-server/pom.xml
+++ b/modules/distribution/airavata-server/pom.xml
@@ -24,61 +24,33 @@
<build>
<plugins>
- <!--plugin>
+ <plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
- <version>2.4</version>
- <inherited>false</inherited>
+ <version>2.8</version>
<executions>
<execution>
- <id>unpack-dependencies</id>
- <phase>package</phase>
+ <id>unpack</id>
+ <phase>compile</phase>
<goals>
<goal>unpack</goal>
</goals>
<configuration>
<artifactItems>
<artifactItem>
- <groupId>org.apache.axis2</groupId>
- <artifactId>axis2-webapp</artifactId>
- <version>${axis2.version}</version>
- <type>war</type>
- <overWrite>true</overWrite>
- <outputDirectory>${project.build.directory}/axis2-${axis2.version}</outputDirectory>
- <excludes>**/icu4j-2.6.1.jar</excludes>
- </artifactItem>
- <artifactItem>
- <groupId>org.apache.airavata</groupId>
- <artifactId>apache-airavata-samples</artifactId>
- <type>zip</type>
- <outputDirectory>${project.build.directory}/samples</outputDirectory>
- </artifactItem>
- </artifactItems>
- </configuration>
- </execution>
- <execution>
- <id>copy</id>
- <phase>package</phase>
- <goals>
- <goal>copy</goal>
- </goals>
- <configuration>
- <artifactItems>
- <artifactItem>
<groupId>org.apache.airavata</groupId>
- <artifactId>airavata-rest-service-webapp</artifactId>
+ <artifactId>airavata-server-configuration</artifactId>
<version>${project.version}</version>
- <type>war</type>
- <overWrite>true</overWrite>
- <outputDirectory>${airavata.war.dir}</outputDirectory>
- <destFileName>airavata.war</destFileName>
+ <type>jar</type>
</artifactItem>
</artifactItems>
- <outputDirectory>${airavata.war.dir}</outputDirectory>
+ <!--includes>**/*.war</includes-->
+ <outputDirectory>${project.build.directory}/conf</outputDirectory>
</configuration>
</execution>
</executions>
- </plugin-->
+ </plugin>
+
<plugin>
<groupId>org.codehaus.gmaven</groupId>
<artifactId>gmaven-plugin</artifactId>
@@ -123,67 +95,7 @@
</execution>
</executions>
</plugin>
- <!--plugin>
- <artifactId>maven-antrun-plugin</artifactId>
- <executions>
- <execution>
- <id>generate-war</id>
- <phase>package</phase>
- <configuration>
- <target>
- <echo message="Building Airavata Server WAR" />
- <echo message="============================" />
- <unzip src="${airavata.bin.zip}" dest="${project.build.directory}/tests" />
- <copy todir="${airavata.webapp.dir}/META-INF">
- <fileset dir="${project.build.directory}/axis2-${axis2.version}/META-INF" />
- </copy>
- <copy todir="${airavata.webapp.dir}/axis2-web">
- <fileset dir="${project.build.directory}/axis2-${axis2.version}/axis2-web" />
- </copy>
- <copy todir="${airavata.webapp.dir}/WEB-INF">
- <fileset dir="${project.build.directory}/axis2-${axis2.version}/WEB-INF" />
- </copy>
- <copy todir="${airavata.webapp.dir}/WEB-INF">
- <fileset dir="${airavata.work.dir}/repository/" />
- </copy>
- <copy todir="${airavata.webapp.dir}/WEB-INF/lib">
- <fileset dir="${airavata.work.dir}/lib/">
- <exclude name="tomcat-*.jar" />
- </fileset>
- </copy>
- <copy todir="${airavata.webapp.dir}/WEB-INF/classes">
- <fileset dir="${airavata.work.dir}/bin/">
- <exclude name="axis2.xml" />
- </fileset>
- </copy>
- <copy todir="${airavata.webapp.dir}/WEB-INF/classes/database_scripts">
- <fileset dir="${airavata.work.dir}/bin/database_scripts" />
- </copy>
- <copy todir="${airavata.webapp.dir}">
- <fileset dir="src/main/resources">
- <include name="LICENSE" />
- <include name="NOTICE" />
- </fileset>
- </copy>
- <replace file="${airavata.webapp.dir}/WEB-INF/classes/airavata-server.properties">
- <replacetoken>server.context-root=axis2</replacetoken>
- <replacevalue>server.context-root=airavata-server</replacevalue>
- </replace>
- <zip destfile="${airavata.war.dir}/airavata-server.war" basedir="${airavata.webapp.dir}" />
- <copy todir="${airavata.war.dir}">
- <fileset dir="src/main/resources/war" />
- </copy>
- <copy file="${airavata.work.dir}/RELEASE_NOTES" todir="${airavata.war.dir}" />
- <zip destfile="${airavata.webapp.war.zip}" basedir="${airavata.war.dir}" />
- <tar tarfile="${airavata.webapp.war.tar.gz}" basedir="${airavata.war.dir}" compression="gzip" />
- </target>
- </configuration>
- <goals>
- <goal>run</goal>
- </goals>
- </execution>
- </executions>
- </plugin-->
+
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml b/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml
index 5eb82f1..05f4475 100644
--- a/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml
+++ b/modules/distribution/airavata-server/src/main/assembly/bin-assembly.xml
@@ -32,28 +32,6 @@
</formats>
<fileSets>
- <!-- ********************** copy axis2 distribution dependencies ********************** -->
- <fileSet>
- <directory>target/axis2-${used.axis2.release}/WEB-INF/lib</directory>
- <outputDirectory>lib</outputDirectory>
- <includes>
- <include>*.jar</include>
- </includes>
- <excludes>
- <exclude>commons-logging*.jar</exclude>
- <exclude>xom*.jar</exclude>
- <exclude>xercesImpl*.jar</exclude>
- <exclude>icu4j*.jar</exclude>
- </excludes>
- </fileSet>
- <fileSet>
- <directory>target/axis2-${used.axis2.release}/WEB-INF/</directory>
- <outputDirectory>repository</outputDirectory>
- <includes>
- <include>services/*</include>
- <include>modules/*</include>
- </includes>
- </fileSet>
<!-- ********************** copy release notes files ********************** -->
<fileSet>
@@ -115,7 +93,7 @@
</includes>
</fileSet>
<fileSet>
- <directory>src/main/resources/conf</directory>
+ <directory>${project.build.directory}/conf</directory>
<outputDirectory>bin</outputDirectory>
<includes>
<include>airavata-server.properties</include>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt b/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt
deleted file mode 100644
index e4398e0..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/PBSTemplate.xslt
+++ /dev/null
@@ -1,77 +0,0 @@
-<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
- the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
- obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
- in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
- ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
- the License. -->
-<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:ns="http://airavata.apache.org/gsi/ssh/2012/12">
-<xsl:output method="text" />
-<xsl:template match="/ns:JobDescriptor">
-#! /bin/sh
-# <xsl:choose>
- <xsl:when test="ns:shellName">
-##PBS -S <xsl:value-of select="ns:shellName"/>
- </xsl:when></xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:queueName">
-#PBS -q <xsl:value-of select="ns:queueName"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:mailOptions">
-#PBS -m <xsl:value-of select="ns:mailOptions"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
-<xsl:when test="ns:acountString">
-#PBS -A <xsl:value-of select="ns:acountString"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:maxWallTime">
-#PBS -l walltime=<xsl:value-of select="ns:maxWallTime"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:jobName">
-#PBS -N <xsl:value-of select="ns:jobName"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:standardOutFile">
-#PBS -o <xsl:value-of select="ns:standardOutFile"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:standardOutFile">
-#PBS -e <xsl:value-of select="ns:standardErrorFile"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="(ns:nodes) and (ns:processesPerNode)">
-#PBS -l nodes=<xsl:value-of select="ns:nodes"/>:ppn=<xsl:value-of select="ns:processesPerNode"/>
-<xsl:text>
</xsl:text>
- </xsl:when>
- </xsl:choose>
-<xsl:for-each select="ns:exports/ns:name">
-<xsl:value-of select="."/>=<xsl:value-of select="./@value"/><xsl:text>
</xsl:text>
-export<xsl:text> </xsl:text><xsl:value-of select="."/>
-<xsl:text>
</xsl:text>
-</xsl:for-each>
-<xsl:for-each select="ns:preJobCommands/ns:command">
- <xsl:value-of select="."/><xsl:text> </xsl:text>
- </xsl:for-each>
-cd <xsl:text> </xsl:text><xsl:value-of select="ns:workingDirectory"/><xsl:text>
</xsl:text>
- <xsl:choose><xsl:when test="ns:jobSubmitterCommand">
-<xsl:value-of select="ns:jobSubmitterCommand"/><xsl:text> </xsl:text></xsl:when></xsl:choose><xsl:value-of select="ns:executablePath"/><xsl:text> </xsl:text>
-<xsl:for-each select="ns:inputs/ns:input">
- <xsl:value-of select="."/><xsl:text> </xsl:text>
- </xsl:for-each>
-<xsl:for-each select="ns:postJobCommands/ns:command">
- <xsl:value-of select="."/><xsl:text> </xsl:text>
-</xsl:for-each>
-
-</xsl:template>
-
-</xsl:stylesheet>
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/SGETemplate.xslt
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/conf/SGETemplate.xslt b/modules/distribution/airavata-server/src/main/resources/conf/SGETemplate.xslt
deleted file mode 100644
index 90fbf01..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/SGETemplate.xslt
+++ /dev/null
@@ -1,79 +0,0 @@
-<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
- the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
- obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
- in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
- ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
- the License. -->
-<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:ns="http://airavata.apache.org/gsi/ssh/2012/12">
-<xsl:output method="text" />
-<xsl:template match="/ns:JobDescriptor">
-#! /bin/sh
-# Grid Engine batch job script built by Apache Airavata
-# <xsl:choose>
- <xsl:when test="ns:shellName">
-#$ -S <xsl:value-of select="ns:shellName"/>
- </xsl:when></xsl:choose>
-#$ -V
- <xsl:choose>
- <xsl:when test="ns:queueName">
-#$ -q <xsl:value-of select="ns:queueName"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:mailOptions">
-#$ -m <xsl:value-of select="ns:mailOptions"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
-<xsl:when test="ns:acountString">
-#$ -A <xsl:value-of select="ns:acountString"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:maxWallTime">
-#$ -l h_rt=<xsl:value-of select="ns:maxWallTime"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:jobName">
-#$ -N <xsl:value-of select="ns:jobName"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:standardOutFile">
-#$ -o <xsl:value-of select="ns:standardOutFile"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:standardOutFile">
-#$ -e <xsl:value-of select="ns:standardErrorFile"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="(ns:nodes) and (ns:processesPerNode)">
-#$ -pe <xsl:value-of select="ns:nodes"/>way 12*<xsl:value-of select="ns:processesPerNode"/>
-<xsl:text>
</xsl:text>
- </xsl:when>
- </xsl:choose>
-<xsl:for-each select="ns:exports/ns:name">
-<xsl:value-of select="."/>=<xsl:value-of select="./@value"/><xsl:text>
</xsl:text>
-export<xsl:text> </xsl:text><xsl:value-of select="."/>
-<xsl:text>
</xsl:text>
-</xsl:for-each>
-<xsl:for-each select="ns:preJobCommands/ns:command">
- <xsl:value-of select="."/><xsl:text> </xsl:text>
- </xsl:for-each>
-cd <xsl:text> </xsl:text><xsl:value-of select="ns:workingDirectory"/><xsl:text>
</xsl:text>
- <xsl:choose><xsl:when test="ns:jobSubmitterCommand">
-<xsl:value-of select="ns:jobSubmitterCommand"/><xsl:text> </xsl:text></xsl:when></xsl:choose><xsl:value-of select="ns:executablePath"/><xsl:text> </xsl:text>
-<xsl:for-each select="ns:inputs/ns:input">
- <xsl:value-of select="."/><xsl:text> </xsl:text>
- </xsl:for-each>
-<xsl:for-each select="ns:postJobCommands/ns:command">
- <xsl:value-of select="."/><xsl:text> </xsl:text>
-</xsl:for-each>
-
-</xsl:template>
-
-</xsl:stylesheet>
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/SLURMTemplate.xslt
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diff --git a/modules/distribution/airavata-server/src/main/resources/conf/SLURMTemplate.xslt b/modules/distribution/airavata-server/src/main/resources/conf/SLURMTemplate.xslt
deleted file mode 100644
index 169dbbf..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/SLURMTemplate.xslt
+++ /dev/null
@@ -1,69 +0,0 @@
-<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under
- the Apache License, Version 2.0 (theÏ "License"); you may not use this file except in compliance with the License. You may
- obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to
- in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
- ANY ~ KIND, either express or implied. See the License for the specific language governing permissions and limitations under
- the License. -->
-<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:ns="http://airavata.apache.org/gsi/ssh/2012/12">
-<xsl:output method="text" />
-<xsl:template match="/ns:JobDescriptor">
-<xsl:choose>
-<xsl:when test="ns:shellName">
-#!<xsl:value-of select="ns:shellName"/>
- </xsl:when>
- </xsl:choose>
-<xsl:choose>
- <xsl:when test="ns:queueName">
-#SBATCH -p <xsl:value-of select="ns:queueName"/>
- </xsl:when>
- </xsl:choose>
-<xsl:choose>
- <xsl:when test="ns:nodes">
-#SBATCH -n <xsl:value-of select="ns:nodes"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:mailAddress">
-#SBATCH -mail-user=<xsl:value-of select="ns:mailAddress"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:mailType">
-#SBATCH -mail-type=<xsl:value-of select="ns:mailType"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
-<xsl:when test="ns:acountString">
-#SBATCH -A <xsl:value-of select="ns:acountString"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:maxWallTime">
-#SBATCH -t <xsl:value-of select="ns:maxWallTime"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:jobName">
-#SBATCH -J <xsl:value-of select="ns:jobName"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:standardOutFile">
-#SBATCH -o <xsl:value-of select="ns:standardOutFile"/>
- </xsl:when>
- </xsl:choose>
- <xsl:choose>
- <xsl:when test="ns:standardOutFile">
-#SBATCH -e <xsl:value-of select="ns:standardErrorFile"/>
- </xsl:when>
- </xsl:choose>
-cd <xsl:text> </xsl:text><xsl:value-of select="ns:workingDirectory"/><xsl:text>
</xsl:text>
- <xsl:choose><xsl:when test="ns:jobSubmitterCommand">
-<xsl:value-of select="ns:jobSubmitterCommand"/><xsl:text> </xsl:text></xsl:when></xsl:choose><xsl:value-of select="ns:executablePath"/><xsl:text> </xsl:text>
-<xsl:for-each select="ns:inputs/ns:input">
- <xsl:value-of select="."/><xsl:text> </xsl:text>
- </xsl:for-each>
-</xsl:template>
-
-</xsl:stylesheet>
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/airavata-server.properties
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/conf/airavata-server.properties b/modules/distribution/airavata-server/src/main/resources/conf/airavata-server.properties
deleted file mode 100644
index 5557a10..0000000
--- a/modules/distribution/airavata-server/src/main/resources/conf/airavata-server.properties
+++ /dev/null
@@ -1,283 +0,0 @@
-#
-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-###########################################################################
-#
-# This properties file provides configuration for all Airavata Services:
-# Registry, Workflow Interpreter, GFac, Message Broker, Message Box
-#
-###########################################################################
-
-###########################################################################
-# Airavata Embedded-Tomcat Server Configuration
-###########################################################################
-# By default, tomcat runs on port 80. If the port is changed, it will be
-# have to be specified with port properties. This will be picked up by
-# the registry service to register the service end-points.
-
-port=8080
-
-# Axis2 server automatically picks up IP address from axis configuration,
-# but some DHCP enables machines do not report correct ip addresses,
-# in which case, the IP address can be manually specified.
-
-#ip=192.2.33.12
-
-
-#This property will enable https and stops http, during the url registration, https urls will be stored and
-# http urls will not get registered, because currently airavata supports only one url for each service
-#enable.https=false
-#system properties used by services to register service URLs
-system.gateway=default
-system.user=admin
-system.password=admin
-airavata.server.url=http://localhost:8080/airavata/services/registry
-
-###########################################################################
-# Airavata Registry Configuration
-###########################################################################
-#for derby [AiravataJPARegistry]
-registry.jdbc.driver=org.apache.derby.jdbc.ClientDriver
-registry.jdbc.url=jdbc:derby://localhost:1527/persistent_data;create=true;user=airavata;password=airavata
-# MySql database configuration
-#registry.jdbc.driver=com.mysql.jdbc.Driver
-#registry.jdbc.url=jdbc:mysql://localhost:3306/persistent_data
-registry.jdbc.user=airavata
-registry.jdbc.password=airavata
-start.derby.server.mode=true
-validationQuery=SELECT 1 from CONFIGURATION
-jpa.connection.properties=MaxActive=10,MaxIdle=5,MinIdle=2,MaxWait=60000,testWhileIdle=true,testOnBorrow=true
-# Properties to setup registry service
-default.registry.user=admin
-default.registry.password=admin
-default.registry.password.hash.method=SHA
-default.registry.gateway=default
-#for rest [RegistryClient]
-#registry.jdbc.url=http://localhost:9080/airavata-services
-
-#user defined registry accessor classes
-#class.provenance.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.configuration.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.descriptor.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.project.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.user.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.published.workflow.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-
-############################################################ ###############
-# Airavata Workflow Interpreter Configurations
-###########################################################################
-
-runInThread=true
-provenance=true
-provenanceWriterThreadPoolSize=20
-gfac.embedded=true
-
-#
-# Security Configuration used by Airavata Generic Factory Service
-# to interact with Computational Resources.
-#
-
-###########################################################################
-# Airavata GFac MyProxy GSI credentials to access Grid Resources.
-###########################################################################
-
-myproxy.server=myproxy.teragrid.org
-myproxy.user=ogce
-myproxy.pass=
-myproxy.life=3600
-# XSEDE Trusted certificates can be downloaded from https://software.xsede.org/security/xsede-certs.tar.gz
-trusted.cert.location=/Users/lahirugunathilake/Downloads/certificates
-# SSH PKI key pair or ssh password can be used SSH based authentication is used.
-# if user specify both password authentication gets the higher preference
-
-################# ---------- For ssh key pair authentication ------------------- ################
-#public.ssh.key=/path to public key for ssh
-#ssh.username=username for ssh connection
-#private.ssh.key=/path to private key file for ssh
-#ssh.keypass=passphrase for the private key
-
-
-################# ---------- For ssh key pair authentication ------------------- ################
-#ssh.username=username for ssh connection
-#ssh.password=Password for ssh connection
-
-
-
-###########################################################################
-# Airavata Message Broker Basic Configurations.
-# the Advanced section provides detailed custom configuration properties.
-###########################################################################
-
-# Default derby database configuration
-broker.jdbc.driver=org.apache.derby.jdbc.EmbeddedDriver
-broker.jdbc.url=jdbc:derby:wsmg;create=true;user=airavata;password=airavata
-
-# Note: This database will only be used if 'broker.storage.type=persistent'
-# is set in advanced properties below.
-# MySql database configuration
-#broker.jdbc.driver=com.mysql.jdbc.Driver
-#broker.jdbc.url=jdbc:mysql://localhost:3306/wsmg?user=airavata&password=airavata
-
-###########################################################################
-# Airavata Message Box Basic Configurations,
-# the Advanced section provides detailed custom configuration properties.
-###########################################################################
-
-# Default derby database
-msgBox.jdbc.driver=org.apache.derby.jdbc.EmbeddedDriver
-msgBox.jdbc.url=jdbc:derby:wsmg;create=true;user=airavata;password=airavata
-
-# MySql database configuration
-#msgBox.jdbc.driver=com.mysql.jdbc.Driver
-#msgBox.jdbc.url=jdbc:mysql://localhost:3306/wsmg?user=airavata&password=airavata
-
-###########################################################################
-# Advance configuration to change service implementations
-###########################################################################
-
-#Update the server context root path if airavata server is deployed under a different context root other than axis2
-server.context-root=airavata-server
-
-#
-# Class which implemented HostScheduler interface. It will determine the which host to submit the request
-#
-host.scheduler=org.apache.airavata.gfac.scheduler.impl.SimpleHostScheduler
-
-#
-# Data Service Plugins classes
-#
-datachain.classes= org.apache.airavata.core.gfac.extension.data.RegistryDataService
-
-#
-# Pre execution Plugins classes. For example, GridFTP Input Staging
-#
-prechain.classes= org.apache.airavata.core.gfac.extension.pre.GridFtpInputStaging
-prechain.classes= org.apache.airavata.core.gfac.extension.pre.HttpInputStaging
-
-#
-# Post execution Plugins classes. For example, GridFTP Output Staging
-#
-postchain.classes= org.apache.airavata.core.gfac.extension.post.GridFtpOutputStaging
-postchain.classes= org.apache.airavata.core.gfac.extension.post.OutputRegister
-
-#
-# Advanced Message Broker Configurations
-#
-
-#socket time out in milliseconds for sending messages. (defaults is 20000)
-broker.socket.timeout=60000
-
-broker.storage.type=persistent
-#broker.storage.type=memory
-
-#specifies wether delivery component should be started or not.
-broker.start.delivery.thread=true
-
-#fixed thread pool based delivery
-#broker.delivery.method=pcrew
-
-#dynamic thread pool based delivery
-#broker.delivery.method=parallel
-
-#single thread delivery
-broker.delivery.method=serial
-
-#number of message delivery failures before a url become black listed (default is 2)
-#broker.msg.delivery.retries=2
-
-#time period (in seconds) a url will be kept blacklisted (default is 5 seconds)
-#consumer.expiration.time.gap=5
-
-#maximum number of messages to be send to a one consumer/url at time.
-#applicable if 'broker.delivery.method' is 'pcrew' . (default is 10)
-
-#sending.batch.size=10
-
-#size of the thread pool. only applicable if 'broker.delivery.method' is 'pcrew'. (default is 4)
-#sending.thread.pool.size=4
-
-#
-# Advanced Message Box Configurations
-#
-msgBox.usedatabase=true
-messagePreservationDays=2
-messagePreservationHours=0
-messagePreservationMinutes=0
-messagePerservationIntervalDays=0
-messagePerservationIntervalHours=1
-messagePerservationIntervalMinutes=0
-
-###---------------------------REGISTRY API IMPLEMENTATION---------------------------###
-
-class.registry.accessor=org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry
-#class.registry.accessor=org.apache.airavata.rest.client.RegistryClient
-
-###########################################################################
-# AMQP Notification Configuration
-###########################################################################
-amqp.notification.enable=1
-
-amqp.broker.host=localhost
-amqp.broker.port=5672
-amqp.broker.username=guest
-amqp.broker.password=guest
-
-amqp.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPSenderImpl
-amqp.topic.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPTopicSenderImpl
-amqp.broadcast.sender=org.apache.airavata.wsmg.client.amqp.rabbitmq.AMQPBroadcastSenderImpl
-
-###---------------------------Computational Middleware Configurations---------------------------###
-
-#enable.application.job.status.history=true
-#http://localhost:8080/axis2/services/RegistryService?wsdl
-registry.service.wsdl=http://localhost:${port}/${server.context-root}/services/RegistryService?wsdl
-
-# If false, disables two phase commit when submitting jobs
-TwoPhase=true
-
-
-###---------------------------Monitoring module Configurations---------------------------###
-#This will be the primary monitoring tool which runs in airavata, in future there will be multiple monitoring
-#mechanisms and one would be able to start a monitor
-monitors=org.apache.airavata.job.monitor.impl.pull.qstat.QstatMonitor,org.apache.airavata.job.monitor.impl.LocalJobMonitor
-#,org.apache.airavata.job.monitor.impl.push.amqp.AMQPMonitor
-#This is the amqp related configuration and this lists down the Rabbitmq host, this is an xsede specific configuration
-amqp.hosts=info1.dyn.teragrid.org,info2.dyn.teragrid.org
-proxy.file.path=/Users/lahirugunathilake/Downloads/x509up_u503876
-connection.name=xsede_private
-
-
-###---------------------------Orchestrator module Configurations---------------------------###
-job.submitter=org.apache.airavata.orchestrator.core.impl.EmbeddedGFACJobSubmitter
-job.validator=org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator
-submitter.interval=10000
-threadpool.size=10
-start.submitter=true
-embedded.mode=true
-enable.validation=false
-orchestrator=org.apache.airavata.orchestrator.server.OrchestratorServer
-
-###---------------------------API Server module Configurations---------------------------###
-apiserver=org.apache.airavata.api.server.AiravataAPIServer
-
-###---------------------------Airavata Server Configurations---------------------------###
-servers=apiserver,orchestrator
-#shutdown.trategy=NONE
-shutdown.trategy=SELF_TERMINATE
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/conf/airavata.jks
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/conf/airavata.jks b/modules/distribution/airavata-server/src/main/resources/conf/airavata.jks
deleted file mode 100644
index bd6d8fe..0000000
Binary files a/modules/distribution/airavata-server/src/main/resources/conf/airavata.jks and /dev/null differ
[2/5] https://issues.apache.org/jira/browse/AIRAVATA-1121 + disabling
some test cases that fail due to unsupported workflow for this version
Posted by sa...@apache.org.
http://git-wip-us.apache.org/repos/asf/airavata/blob/a2dcc366/modules/distribution/airavata-server/src/main/resources/war/LICENSE
----------------------------------------------------------------------
diff --git a/modules/distribution/airavata-server/src/main/resources/war/LICENSE b/modules/distribution/airavata-server/src/main/resources/war/LICENSE
deleted file mode 100644
index b455a1c..0000000
--- a/modules/distribution/airavata-server/src/main/resources/war/LICENSE
+++ /dev/null
@@ -1,2387 +0,0 @@
- Apache License
- Version 2.0, January 2004
- http://www.apache.org/licenses/
-
- TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
-
- 1. Definitions.
-
- "License" shall mean the terms and conditions for use, reproduction,
- and distribution as defined by Sections 1 through 9 of this document.
-
- "Licensor" shall mean the copyright owner or entity authorized by
- the copyright owner that is granting the License.
-
- "Legal Entity" shall mean the union of the acting entity and all
- other entities that control, are controlled by, or are under common
- control with that entity. For the purposes of this definition,
- "control" means (i) the power, direct or indirect, to cause the
- direction or management of such entity, whether by contract or
- otherwise, or (ii) ownership of fifty percent (50%) or more of the
- outstanding shares, or (iii) beneficial ownership of such entity.
-
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- You may add Your own copyright statement to Your modifications and
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- the conditions stated in this License.
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- 5. Submission of Contributions. Unless You explicitly state otherwise,
- any Contribution intentionally submitted for inclusion in the Work
- by You to the Licensor shall be under the terms and conditions of
- this License, without any additional terms or conditions.
- Notwithstanding the above, nothing herein shall supersede or modify
- the terms of any separate license agreement you may have executed
- with Licensor regarding such Contributions.
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- 6. Trademarks. This License does not grant permission to use the trade
- names, trademarks, service marks, or product names of the Licensor,
- except as required for reasonable and customary use in describing the
- origin of the Work and reproducing the content of the NOTICE file.
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- 7. Disclaimer of Warranty. Unless required by applicable law or
- agreed to in writing, Licensor provides the Work (and each
- Contributor provides its Contributions) on an "AS IS" BASIS,
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- appropriateness of using or redistributing the Work and assume any
- risks associated with Your exercise of permissions under this License.
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- 8. Limitation of Liability. In no event and under no legal theory,
- whether in tort (including negligence), contract, or otherwise,
- unless required by applicable law (such as deliberate and grossly
- negligent acts) or agreed to in writing, shall any Contributor be
- liable to You for damages, including any direct, indirect, special,
- incidental, or consequential damages of any character arising as a
- result of this License or out of the use or inability to use the
- Work (including but not limited to damages for loss of goodwill,
- work stoppage, computer failure or malfunction, or any and all
- other commercial damages or losses), even if such Contributor
- has been advised of the possibility of such damages.
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- 9. Accepting Warranty or Additional Liability. While redistributing
- the Work or Derivative Works thereof, You may choose to offer,
- and charge a fee for, acceptance of support, warranty, indemnity,
- or other liability obligations and/or rights consistent with this
- License. However, in accepting such obligations, You may act only
- on Your own behalf and on Your sole responsibility, not on behalf
- of any other Contributor, and only if You agree to indemnify,
- defend, and hold each Contributor harmless for any liability
- incurred by, or claims asserted against, such Contributor by reason
- of your accepting any such warranty or additional liability.
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- END OF TERMS AND CONDITIONS
-
- APPENDIX: How to apply the Apache License to your work.
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- To apply the Apache License to your work, attach the following
- boilerplate notice, with the fields enclosed by brackets "[]"
- replaced with your own identifying information. (Don't include
- the brackets!) The text should be enclosed in the appropriate
- comment syntax for the file format. We also recommend that a
- file or class name and description of purpose be included on the
- same "printed page" as the copyright notice for easier
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- Copyright [yyyy] [name of copyright owner]
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- Licensed under the Apache License, Version 2.0 (the "License");
- you may not use this file except in compliance with the License.
- You may obtain a copy of the License at
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- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing, software
- distributed under the License is distributed on an "AS IS" BASIS,
- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- See the License for the specific language governing permissions and
- limitations under the License.
-
-===================================================================================
-The Apache Airavata distribution includes a number of run time
-dependencies with separate copyright notices and license terms. Your use of the
-Apache Airavata code is subject to the terms and conditions of the following licenses.
-===================================================================================
-
-===============================================================================
-The following components come under Apache Software License 2.0
-===============================================================================
-
-apache axiom, apache axis2, apache commons, apache derby, apache geronimo,
-apache httpcore components, apache log4j, apache xmlbeans, apache xmlschema,
-aws-java-sdk-1.1.8.jar, bcel-5.1.jar, Codehaus Jackson (jackson-core-asl-1.9.2.jar,
-jackson-jaxrs-1.9.2.jar, jackson-mapper-asl-1.9.2.jar, jackson-xc-1.9.2.jar,
-jets3t-0.8.0.jar, jettison-1.0-RC2.jar, neethi-2.0.4.jar, PDFBox libraries
-(pdfbox, jempbox, fontbox), wstx-asl-3.2.4.jar
-
-- Bean Validation API (http://beanvalidation.org) javax.validation:validation-api:jar:1.1.0.Final
-- Hibernate Validator Engine (http://validator.hibernate.org/hibernate-validator) org.hibernate:hibernate-validator:jar:4.3.0.Final
-- GSS-API implementation for SSL with proxies (https://github.com/jglobus/JGlobus/gss) org.jglobus:gss:jar:2.0.6
-- SSL support (https://github.com/jglobus/JGlobus/jsse) org.jglobus:jsse:jar:2.0.6
-- myproxy (https://github.com/jglobus/JGlobus/myproxy) org.jglobus:myproxy:jar:2.0.6
-- SSL and proxy certificate support (https://github.com/jglobus/JGlobus/ssl-proxies) org.jglobus:ssl-proxies:jar:2.0.6
-- Bouncy Castle for GSS (https://github.com/jsiwek/BouncyCastleSSLv3) org.ogce:bcgss:jar:146
-- StAX API (http://stax.codehaus.org/) stax:stax-api:jar:1.0.1
-- Commons Codec (http://commons.apache.org/codec/) commons-codec:commons-codec:jar:1.4
-- Commons IO (http://commons.apache.org/io/) commons-io:commons-io:jar:1.4
-- Commons Lang (http://commons.apache.org/lang/) commons-lang:commons-lang:jar:2.6
-- Commons Logging (http://commons.apache.org/logging) commons-logging:commons-logging:jar:1.1.1
-- XmlBeans (http://xmlbeans.apache.org) org.apache.xmlbeans:xmlbeans:jar:2.5.0
-
-===============================================================================
-The following components use Apache based Licenses
-===============================================================================
-
-===============================================================================
-For: jdom-1.0.jar
- Containing Project URL: http://www.jdom.org/
-/*--
-
- $Id: LICENSE.txt,v 1.11 2004/02/06 09:32:57 jhunter Exp $
-
- Copyright (C) 2000-2004 Jason Hunter & Brett McLaughlin.
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions
- are met:
-
- 1. Redistributions of source code must retain the above copyright
- notice, this list of conditions, and the following disclaimer.
-
- 2. Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions, and the disclaimer that follows
- these conditions in the documentation and/or other materials
- provided with the distribution.
-
- 3. The name "JDOM" must not be used to endorse or promote products
- derived from this software without prior written permission. For
- written permission, please contact <request_AT_jdom_DOT_org>.
-
- 4. Products derived from this software may not be called "JDOM", nor
- may "JDOM" appear in their name, without prior written permission
- from the JDOM Project Management <request_AT_jdom_DOT_org>.
-
- In addition, we request (but do not require) that you include in the
- end-user documentation provided with the redistribution and/or in the
- software itself an acknowledgement equivalent to the following:
- "This product includes software developed by the
- JDOM Project (http://www.jdom.org/)."
- Alternatively, the acknowledgment may be graphical using the logos
- available at http://www.jdom.org/images/logos.
-
- THIS SOFTWARE IS PROVIDED ``AS IS'' AND ANY EXPRESSED OR IMPLIED
- WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
- OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- DISCLAIMED. IN NO EVENT SHALL THE JDOM AUTHORS OR THE PROJECT
- CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
- SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
- LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
- USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
- ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
- OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
- OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
- SUCH DAMAGE.
-
- This software consists of voluntary contributions made by many
- individuals on behalf of the JDOM Project and was originally
- created by Jason Hunter <jhunter_AT_jdom_DOT_org> and
- Brett McLaughlin <brett_AT_jdom_DOT_org>. For more information
- on the JDOM Project, please see <http://www.jdom.org/>.
-
- */
-
-===============================================================================
-
-ASM bytecode manipulation library (asm)
- Containing Project URL: http://asm.ow2.org/
-
- Copyright (c) 2000-2005 INRIA, France Telecom
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions
- are met:
-
- 1. Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
-
- 2. Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in the
- documentation and/or other materials provided with the distribution.
-
- 3. Neither the name of the copyright holders nor the names of its
- contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
- AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
- THE POSSIBILITY OF SUCH DAMAGE.
-
-===============================================================================
-
-For: cryptix-asn1-versionless.jar, cryptix32-versionless.jar
- Containing Project URL: http://www.cryptix.org/
-
-Cryptix General License
-
-Copyright (c) 1995-2005 The Cryptix Foundation Limited.
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are
-met:
-
- 1. Redistributions of source code must retain the copyright notice,
- this list of conditions and the following disclaimer.
- 2. Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in
- the documentation and/or other materials provided with the
- distribution.
-
-THIS SOFTWARE IS PROVIDED BY THE CRYPTIX FOUNDATION LIMITED AND
-CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES,
-INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
-IN NO EVENT SHALL THE CRYPTIX FOUNDATION LIMITED OR CONTRIBUTORS BE
-LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
-SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
-BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
-OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
-IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-===============================================================================
-The following components come under Extreme! Lab Software License
-===============================================================================
-
-XPP3
- Containing Project URL: http://www.extreme.indiana.edu/xgws/xsoap/xpp/
-xsul, xsul5, xutil
- Containing Project URL: http://www.extreme.indiana.edu/xgws/xsul/
-wsmg
- Containing Project URL: http://www.extreme.indiana.edu/xgws/messenger/index.html
-gpel, weps-beans, pegasuswebservice, mapReduce-service-client, atomixmiser
- Containing Project URL: http://www.extreme.indiana.edu/xgws/
-
-Indiana University Extreme! Lab Software License
-
-Version 1.1.1
-
-Copyright (c) 2002 Extreme! Lab, Indiana University. All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions
-are met:
-
-1. Redistributions of source code must retain the above copyright notice,
- this list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in
- the documentation and/or other materials provided with the distribution.
-
-3. The end-user documentation included with the redistribution, if any,
- must include the following acknowledgment:
-
- "This product includes software developed by the Indiana University
- Extreme! Lab (http://www.extreme.indiana.edu/)."
-
-Alternately, this acknowledgment may appear in the software itself,
-if and wherever such third-party acknowledgments normally appear.
-
-4. The names "Indiana Univeristy" and "Indiana Univeristy Extreme! Lab"
-must not be used to endorse or promote products derived from this
-software without prior written permission. For written permission,
-please contact http://www.extreme.indiana.edu/.
-
-5. Products derived from this software may not use "Indiana Univeristy"
-name nor may "Indiana Univeristy" appear in their name, without prior
-written permission of the Indiana University.
-
-THIS SOFTWARE IS PROVIDED "AS IS" AND ANY EXPRESSED OR IMPLIED
-WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
-IN NO EVENT SHALL THE AUTHORS, COPYRIGHT HOLDERS OR ITS CONTRIBUTORS
-BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
-SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
-BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-========================================================================
-The following components are MIT Licensed
-========================================================================
-
-SLF4J,log4j-over-slf4j, jcl-over-slf4j, slf4j-api,mockito-all-1.8.5,jopt-simple-3.2.jar
- Containing Project URL: http://www.slf4j.org/
-
-Copyright (c) 2004-2008 QOS.ch
- All rights reserved.
-
- Permission is hereby granted, free of charge, to any person obtaining
- a copy of this software and associated documentation files (the
- "Software"), to deal in the Software without restriction, including
- without limitation the rights to use, copy, modify, merge, publish,
- distribute, sublicense, and/or sell copies of the Software, and to
- permit persons to whom the Software is furnished to do so, subject to
- the following conditions:
-
- The above copyright notice and this permission notice shall be
- included in all copies or substantial portions of the Software.
-
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
- EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
- MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
- NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
- LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
- OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
- WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
-========================================================================
-
-For dom4j-1.6.1.jar:
- Containing Project URL: http://dom4j.sourceforge.net/
-Copyright 2001-2005 (C) MetaStuff, Ltd. All Rights Reserved.
-
-Redistribution and use of this software and associated documentation
-("Software"), with or without modification, are permitted provided
-that the following conditions are met:
-
-1. Redistributions of source code must retain copyright
- statements and notices. Redistributions must also contain a
- copy of this document.
-
-2. Redistributions in binary form must reproduce the
- above copyright notice, this list of conditions and the
- following disclaimer in the documentation and/or other
- materials provided with the distribution.
-
-3. The name "DOM4J" must not be used to endorse or promote
- products derived from this Software without prior written
- permission of MetaStuff, Ltd. For written permission,
- please contact dom4j-info@metastuff.com.
-
-4. Products derived from this Software may not be called "DOM4J"
- nor may "DOM4J" appear in their names without prior written
- permission of MetaStuff, Ltd. DOM4J is a registered
- trademark of MetaStuff, Ltd.
-
-5. Due credit should be given to the DOM4J Project -
- http://www.dom4j.org
-
-THIS SOFTWARE IS PROVIDED BY METASTUFF, LTD. AND CONTRIBUTORS
-``AS IS'' AND ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, BUT
-NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
-FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL
-METASTUFF, LTD. OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
-INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
-HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
-STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
-ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
-OF THE POSSIBILITY OF SUCH DAMAGE.
-
-====================================================================================================
-
-For Bouncy Castle:
- Containing Project URL: http://www.bouncycastle.org/
-
-Copyright (c) 2000 - 2011 The Legion Of The Bouncy Castle (http://www.bouncycastle.org)
-
-Permission iss software and associated documentation files (the "Software"), to deal in
-the Software without restriction, including without limitation the rights to
-use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
-the Software, and to permit persons to whom the Software is furnished to do so,
-subject to the following conditions hereby granted, free of charge, to any person obtaining a copy of this software
-and associated documentation files (the "Software"), to deal in the Software without restriction,
-including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense,
-and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so,
-subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all copies or substantial
-portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT
-LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
-IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
-WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
-SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
-=======================================================================================================
-
-For: The International Components for Unicode (icu4j-2.6.1.jar)
- Containing Project URL: http://site.icu-project.org/
-
- Copyright (c) 1995-2009 International Business Machines Corporation
- and others
-
- All rights reserved.
-
- Permission is hereby granted, free of charge, to any person obtaining
- a copy of this software and associated documentation files (the
- "Software"), to deal in the Software without restriction, including
- without limitation the rights to use, copy, modify, merge, publish,
- distribute, and/or sell copies of the Software, and to permit persons
- to whom the Software is furnished to do so, provided that the above
- copyright notice(s) and this permission notice appear in all copies
- of the Software and that both the above copyright notice(s) and this
- permission notice appear in supporting documentation.
-
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
- OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF THIRD PARTY RIGHTS.
- IN NO EVENT SHALL THE COPYRIGHT HOLDER OR HOLDERS INCLUDED IN THIS NOTICE
- BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL INDIRECT OR CONSEQUENTIAL DAMAGES,
- OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
- WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION,
- ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS
- SOFTWARE.
-
- Except as contained in this notice, the name of a copyright holder shall
- not be used in advertising or otherwise to promote the sale, use or other
- dealings in this Software without prior written authorization of the
- copyright holder.
-
-======================================================================
-The following components are CDDL based License
-======================================================================
-
-For activation-1.1.jar, jaxb-api-2.1.jar, mail-1.4.jar, junit,
-Servlet Specification 2.5 API (servlet-api-2.5-6.1.14.jar),
-Classfish Jasper API (jsp-api-2.1-6.1.14.jar), and
-JSP2.1 Jasper implementation from Glassfish (jsp-2.1-6.1.14.jar),
-Jersey from Glassfish (jersey-client-1.13.jar, jersey-core-1.13.jar,
-jersey-json-1.13.jar, jersey-multipart-1.13.jar) and JSP2.1 Jasper
-implementation from Glassfish (jsp-2.1-6.1.14.jar),whirr-core-0.7.1.jar, whirr-hadoop-0.7.1.jar:
-
-NOTE: jersey is dual licensed (http://jersey.java.net/CDDL+GPL.html),
-Apahce Airavata elects to include jersey in this distribution under the
-[CDDLv_1.0] license.
-
- COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0
-
- 1. Definitions.
-
- 1.1. Contributor means each individual or entity that creates or
- contributes to the creation of Modifications.
-
- 1.2. Contributor Version means the combination of the Original Software,
- prior Modifications used by a Contributor (if any), and the Modifications
- made by that particular Contributor.
-
- 1.3. Covered Software means (a) the Original Software, or
- (b) Modifications, or (c) the combination of files containing Original
- Software with files containing Modifications, in each case including
- portions thereof.
-
- 1.4. Executable means the Covered Software in any form other than Source
- Code.
-
- 1.5. Initial Developer means the individual or entity that first makes
- Original Software available under this License.
-
- 1.6. Larger Work means a work which combines Covered Software or portions
- thereof with code not governed by the terms of this License.
-
- 1.7. License means this document.
-
- 1.8. Licensable means having the right to grant, to the maximum extent
- possible, whether at the time of the initial grant or subsequently
- acquired, any and all of the rights conveyed herein.
-
- 1.9. Modifications means the Source Code and Executable form of any of
- the following: A. Any file that results from an addition to, deletion
- from or modification of the contents of a file containing Original
- Software or previous Modifications; B. Any new file that contains any
- part of the Original Software or previous Modification; or C. Any new
- file that is contributed or otherwise made available under the terms of
- this License.
-
- 1.10. Original Software means the Source Code and Executable form of
- computer software code that is originally released under this License.
-
- 1.11. Patent Claims means any patent claim(s), now owned or hereafter
- acquired, including without limitation, method, process, and apparatus
- claims, in any patent Licensable by grantor.
-
- 1.12. Source Code means (a) the common form of computer software code in
- which modifications are made and (b) associated documentation included in
- or with such code.
-
- 1.13. You (or Your) means an individual or a legal entity exercising
- rights under, and complying with all of the terms of, this License. For
- legal entities, You includes any entity which controls, is controlled by,
- or is under common control with You. For purposes of this definition,
- control means (a) the power, direct or indirect, to cause the direction
- or management of such entity, whether by contract or otherwise, or
- (b) ownership of more than fifty percent (50%) of the outstanding shares
- or beneficial ownership of such entity.
-
- 2. License Grants.
-
- 2.1. The Initial Developer Grant. Conditioned upon Your compliance with
- Section 3.1 below and subject to third party intellectual property
- claims, the Initial Developer hereby grants You a world-wide,
- royalty-free, non-exclusive license:
-
- (a) under intellectual property rights (other than patent or trademark)
- Licensable by Initial Developer, to use, reproduce, modify, display,
- perform, sublicense and distribute the Original Software (or portions
- thereof), with or without Modifications, and/or as part of a Larger
- Work; and
-
- (b) under Patent Claims infringed by the making, using or selling of
- Original Software, to make, have made, use, practice, sell, and offer
- for sale, and/or otherwise dispose of the Original Software (or
- portions thereof);
-
- (c) The licenses granted in Sections 2.1(a) and (b) are effective on the
- date Initial Developer first distributes or otherwise makes the
- Original Software available to a third party under the terms of
- this License;
-
- (d) Notwithstanding Section 2.1(b) above, no patent license is granted:
- (1) for code that You delete from the Original Software, or (2) for
- infringements caused by: (i) the modification of the Original
- Software, or (ii) the combination of the Original Software with other
- software or devices.
-
- 2.2. Contributor Grant. Conditioned upon Your compliance with Section 3.1
- below and subject to third party intellectual property claims, each
- Contributor hereby grants You a world-wide, royalty-free, non-exclusive
- license:
-
- (a) under intellectual property rights (other than patent or trademark)
- Licensable by Contributor to use, reproduce, modify, display, perform,
- sublicense and distribute the Modifications created by such
- Contributor (or portions thereof), either on an unmodified basis,
- with other Modifications, as Covered Software and/or as part of a
- Larger Work; and
-
- (b) under Patent Claims infringed by the making, using, or selling of
- Modifications made by that Contributor either alone and/or in
- combination with its Contributor Version (or portions of such
- combination), to make, use, sell, offer for sale, have made, and/or
- otherwise dispose of: (1) Modifications made by that Contributor (or
- portions thereof); and (2) the combination of Modifications made by
- that Contributor with its Contributor Version (or portions of such
- combination).
-
- (c) The licenses granted in Sections 2.2(a) and 2.2(b) are effective on
- the date Contributor first distributes or otherwise makes the
- Modifications available to a third party.
-
- (d) Notwithstanding Section 2.2(b) above, no patent license is granted:
- (1) for any code that Contributor has deleted from the Contributor
- Version; (2) for infringements caused by: (i) third party
- modifications of Contributor Version, or (ii) the combination of
- Modifications made by that Contributor with other software (except
- as part of the Contributor Version) or other devices; or (3) under
- Patent Claims infringed by Covered Software in the absence of
- Modifications made by that Contributor.
-
- 3. Distribution Obligations.
-
- 3.1. Availability of Source Code. Any Covered Software that You distribute
- or otherwise make available in Executable form must also be made available
- in Source Code form and that Source Code form must be distributed only
- under the terms of this License. You must include a copy of this License
- with every copy of the Source Code form of the Covered Software You
- distribute or otherwise make available. You must inform recipients of any
- such Covered Software in Executable form as to how they can obtain such
- Covered Software in Source Code form in a reasonable manner on or through
- a medium customarily used for software exchange.
-
- 3.2. Modifications. The Modifications that You create or to which You
- contribute are governed by the terms of this License. You represent that
- You believe Your Modifications are Your original creation(s) and/or You
- have sufficient rights to grant the rights conveyed by this License.
-
- 3.3. Required Notices. You must include a notice in each of Your
- Modifications that identifies You as the Contributor of the Modification.
- You may not remove or alter any copyright, patent or trademark notices
- contained within the Covered Software, or any notices of licensing or any
- descriptive text giving attribution to any Contributor or the Initial
- Developer.
-
- 3.4. Application of Additional Terms. You may not offer or impose any
- terms on any Covered Software in Source Code form that alters or restricts
- the applicable version of this License or the recipients rights hereunder.
- You may choose to offer, and to charge a fee for, warranty, support,
- indemnity or liability obligations to one or more recipients of Covered
- Software. However, you may do so only on Your own behalf, and not on
- behalf of the Initial Developer or any Contributor. You must make it
- absolutely clear that any such warranty, support, indemnity or liability
- obligation is offered by You alone, and You hereby agree to indemnify the
- Initial Developer and every Contributor for any liability incurred by the
- Initial Developer or such Contributor as a result of warranty, support,
- indemnity or liability terms You offer.
-
- 3.5. Distribution of Executable Versions. You may distribute the
- Executable form of the Covered Software under the terms of this License or
- under the terms of a license of Your choice, which may contain terms
- different from this License, provided that You are in compliance with the
- terms of this License and that the license for the Executable form does
- not attempt to limit or alter the recipients rights in the Source Code
- form from the rights set forth in this License. If You distribute the
- Covered Software in Executable form under a different license, You must
- make it absolutely clear that any terms which differ from this License
- are offered by You alone, not by the Initial Developer or Contributor.
- You hereby agree to indemnify the Initial Developer and every Contributor
- for any liability incurred by the Initial Developer or such Contributor as
- a result of any such terms You offer.
-
- 3.6. Larger Works. You may create a Larger Work by combining Covered
- Software with other code not governed by the terms of this License and
- distribute the Larger Work as a single product. In such a case, You must
- make sure the requirements of this License are fulfilled for the Covered
- Software.
-
- 4. Versions of the License.
-
- 4.1. New Versions. Sun Microsystems, Inc. is the initial license steward
- and may publish revised and/or new versions of this License from time to
- time. Each version will be given a distinguishing version number. Except
- as provided in Section 4.3, no one other than the license steward has the
- right to modify this License.
-
- 4.2. Effect of New Versions. You may always continue to use, distribute
- or otherwise make the Covered Software available under the terms of the
- version of the License under which You originally received the Covered
- Software. If the Initial Developer includes a notice in the Original
- Software prohibiting it from being distributed or otherwise made
- available under any subsequent version of the License, You must
- distribute and make the Covered Software available under the terms of
- the version of the License under which You originally received the
- Covered Software. Otherwise, You may also choose to use, distribute or
- otherwise make the Covered Software available under the terms of any
- subsequent version of the License published by the license steward.
-
- 4.3. Modified Versions. When You are an Initial Developer and You want
- to create a new license for Your Original Software, You may create and
- use a modified version of this License if You: (a) rename the license and
- remove any references to the name of the license steward (except to note
- that the license differs from this License); and (b) otherwise make it
- clear that the license contains terms which differ from this License.
-
- 5. DISCLAIMER OF WARRANTY. COVERED SOFTWARE IS PROVIDED UNDER THIS LICENSE
- ON AN AS IS BASIS, WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR
- IMPLIED, INCLUDING, WITHOUT LIMITATION, WARRANTIES THAT THE COVERED
- SOFTWARE IS FREE OF DEFECTS, MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE
- OR NON-INFRINGING. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF
- THE COVERED SOFTWARE IS WITH YOU. SHOULD ANY COVERED SOFTWARE PROVE
- DEFECTIVE IN ANY RESPECT, YOU (NOT THE INITIAL DEVELOPER OR ANY OTHER
- CONTRIBUTOR) ASSUME THE COST OF ANY NECESSARY SERVICING, REPAIR OR
- CORRECTION. THIS DISCLAIMER OF WARRANTY CONSTITUTES AN ESSENTIAL PART OF
- THIS LICENSE. NO USE OF ANY COVERED SOFTWARE IS AUTHORIZED HEREUNDER
- EXCEPT UNDER THIS DISCLAIMER.
-
- 6. TERMINATION.
-
- 6.1. This License and the rights granted hereunder will terminate
- automatically if You fail to comply with terms herein and fail to cure
- such breach within 30 days of becoming aware of the breach. Provisions
- which, by their nature, must remain in effect beyond the termination of
- this License shall survive.
-
- 6.2. If You assert a patent infringement claim (excluding declaratory
- judgment actions) against Initial Developer or a Contributor (the Initial
- Developer or Contributor against whom You assert such claim is referred
- to as Participant) alleging that the Participant Software (meaning the
- Contributor Version where the Participant is a Contributor or the
- Original Software where the Participant is the Initial Developer)
- directly or indirectly infringes any patent, then any and all rights
- granted directly or indirectly to You by such Participant, the Initial
- Developer (if the Initial Developer is not the Participant) and all
- Contributors under Sections 2.1 and/or 2.2 of this License shall, upon
- 60 days notice from Participant terminate prospectively and automatically
- at the expiration of such 60 day notice period, unless if within such
- 60 day period You withdraw Your claim with respect to the Participant
- Software against such Participant either unilaterally or pursuant to a
- written agreement with Participant.
-
- 6.3. In the event of termination under Sections 6.1 or 6.2 above, all end
- user licenses that have been validly granted by You or any distributor
- hereunder prior to termination (excluding licenses granted to You by any
- distributor) shall survive termination.
-
- 7. LIMITATION OF LIABILITY. UNDER NO CIRCUMSTANCES AND UNDER NO LEGAL
- THEORY, WHETHER TORT (INCLUDING NEGLIGENCE), CONTRACT, OR OTHERWISE, SHALL
- YOU, THE INITIAL DEVELOPER, ANY OTHER CONTRIBUTOR, OR ANY DISTRIBUTOR OF
- COVERED SOFTWARE, OR ANY SUPPLIER OF ANY OF SUCH PARTIES, BE LIABLE TO ANY
- PERSON FOR ANY INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES OF
- ANY CHARACTER INCLUDING, WITHOUT LIMITATION, DAMAGES FOR LOST PROFITS,
- LOSS OF GOODWILL, WORK STOPPAGE, COMPUTER FAILURE OR MALFUNCTION, OR ANY
- AND ALL OTHER COMMERCIAL DAMAGES OR LOSSES, EVEN IF SUCH PARTY SHALL HAVE
- BEEN INFORMED OF THE POSSIBILITY OF SUCH DAMAGES. THIS LIMITATION OF
- LIABILITY SHALL NOT APPLY TO LIABILITY FOR DEATH OR PERSONAL INJURY
- RESULTING FROM SUCH PARTYS NEGLIGENCE TO THE EXTENT APPLICABLE LAW
- PROHIBITS SUCH LIMITATION. SOME JURISDICTIONS DO NOT ALLOW THE EXCLUSION
- OR LIMITATION OF INCIDENTAL OR CONSEQUENTIAL DAMAGES, SO THIS EXCLUSION
- AND LIMITATION MAY NOT APPLY TO YOU.
-
- 8. U.S. GOVERNMENT END USERS. The Covered Software is a commercial item,
- as that term is defined in 48 C.F.R. 2.101 (Oct. 1995), consisting of
- commercial computer software (as that term is defined at 48 C.F.R.
- 252.227-7014(a)(1)) and commercial computer software documentation as such
- terms are used in 48 C.F.R. 12.212 (Sept. 1995). Consistent with 48 C.F.R.
- 12.212 and 48 C.F.R. 227.7202-1 through 227.7202-4 (June 1995), all U.S.
- Government End Users acquire Covered Software with only those rights set
- forth herein. This U.S. Government Rights clause is in lieu of, and
- supersedes, any other FAR, DFAR, or other clause or provision that
- addresses Government rights in computer software under this License.
-
- 9. MISCELLANEOUS. This License represents the complete agreement
- concerning subject matter hereof. If any provision of this License is
- held to be unenforceable, such provision shall be reformed only to the
- extent necessary to make it enforceable. This License shall be governed
- by the law of the jurisdiction specified in a notice contained within
- the Original Software (except to the extent applicable law, if any,
- provides otherwise), excluding such jurisdictions conflict-of-law
- provisions. Any litigation relating to this License shall be subject to
- the jurisdiction of the courts located in the jurisdiction and venue
- specified in a notice contained within the Original Software, with the
- losing party responsible for costs, including, without limitation, court
- costs and reasonable attorneys fees and expenses. The application of the
- United Nations Convention on Contracts for the International Sale of
- Goods is expressly excluded. Any law or regulation which provides that
- the language of a contract shall be construed against the drafter shall
- not apply to this License. You agree that You alone are responsible for
- compliance with the United States export administration regulations (and
- the export control laws and regulation of any other countries) when You
- use, distribute or otherwise make available any Covered Software.
-
- 10. RESPONSIBILITY FOR CLAIMS. As between Initial Developer and the
- Contributors, each party is responsible for claims and damages arising,
- directly or indirectly, out of its utilization of rights under this
- License and You agree to work with Initial Developer and Contributors
- to distribute such responsibility on an equitable basis. Nothing herein
- is intended or shall be deemed to constitute any admission of liability.
-
- NOTICE PURSUANT TO SECTION 9 OF THE COMMON DEVELOPMENT AND DISTRIBUTION
- LICENSE (CDDL) The code released under the CDDL shall be governed by the
- laws of the State of California (excluding conflict-of-law provisions).
- Any litigation relating to this License shall be subject to the
- jurisdiction of the Federal Courts of the Northern District of California
- and the state courts of the State of California, with venue lying in
- Santa Clara County, California.
-
-
-==============================================================================
-
-For: jaxb-xjc-2.1.7.jar
- Containing Project URL:
-
-Copyright (c) 2004 Kohsuke Kawaguchi
-
-Permission is hereby granted, free of charge, to any person
-obtaining a copy of this software and associated documentation
-files (the "Software"), to deal in the Software without
-restriction, including without limitation the rights to use,
-copy, modify, merge, publish, distribute, sublicense, and/or
-sell copies of the Software, and to permit persons to whom
-the Software is furnished to do so, subject to the following
-conditions:
-
-The above copyright notice and this permission notice shall
-be included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY
-KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE
-WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
-PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS
-OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR
-OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
-OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
-SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
-===============================================================================
-The following components are BSD Licensed
-===============================================================================
-
-For jibx-bind-1.2.1.jar,jibx-run-1.2.1.jar, antlr-2.7.7.jar,hamcrest-all-1.1.jar,whirr-core-0.7.1.jar, whirr-hadoop-0.7.1.jar:
- Containing Project URL: http://jibx.sourceforge.net, http://www.antlr.org/
-
-Copyright (c) 2003-2007, Dennis M. Sosnoski
-All rights reserved.
-
-Copyright (c) 2010 Terence Parr
-All rights reserved.
-
-[The BSD License]
-
-Redistribution and use in source and binary forms, with or without modification,
-are permitted provided that the following conditions are met:
-
- * Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
- * Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
- * Neither the name of JiBX nor the names of its contributors may be used
- to endorse or promote products derived from this software without specific
- prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
-ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-==============================================================================
-
-For YFilter:
- Containing Project URL: http://yfilter.cs.umass.edu/
-
-YFilter 1.0 COPYRIGHT, LICENSE and DISCLAIMER
-
-Copyright (c) 2002, 2004, Regents of the University of California All rights reserved.
-
-Redistribution and use in source and binary forms, with or without modification, are
-permitted provided that the following conditions are met:
-
- * Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
- * Redistributions in binary form must reproduce the above copyright notice, this
- list of conditions and the following disclaimer in the documentation and/or other
- materials provided with the distribution.
- * Neither the name of the University of California at Berkeley nor the names of
- its contributors may be used to endorse or promote products derived from this
- software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY
-EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
-OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT
-SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
-OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
-HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-==========================================================================================
-For jaxen-1.1.1.jar:
- Containing Project URL: http://jaxen.codehaus.org/
-
- Copyright 2003-2006 The Werken Company. All Rights Reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are
- met:
-
- * Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
-
- * Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in the
- documentation and/or other materials provided with the distribution.
-
- * Neither the name of the Jaxen Project nor the names of its
- contributors may be used to endorse or promote products derived
- from this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
-IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
-TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
-PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
-OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
-EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
-PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-===============================================================================
-The following components are CPL Licensed
-===============================================================================
-
-For wsdl4j-1.6.2.jar:
- Containing Project URL: http://sourceforge.net/projects/wsdl4j/
-
-Common Public License Version 1.0
-
-THE ACCOMPANYING PROGRAM IS PROVIDED UNDER THE TERMS OF THIS COMMON PUBLIC
LICENSE ("AGREEMENT"). ANY USE, REPRODUCTION OR DISTRIBUTION OF THE PROGRAM
CONSTITUTES RECIPIENT'S ACCEPTANCE OF THIS AGREEMENT.
-1. DEFINITIONS
-"Contribution" means:
-a) in the case of the initial Contributor, the initial code and
documentation distributed under this Agreement, and
-b) in the case of each subsequent Contributor:
-i) changes to the Program, and
-ii) additions to the Program;
-where such changes and/or additions to the Program originate from and are
distributed by that particular Contributor. A Contribution 'originates' from a
Contributor if it was added to the Program by such Contributor itself or anyone
acting on such Contributor's behalf. Contributions do not include additions to
the Program which: (i) are separate modules of software distributed in
conjunction with the Program under their own license agreement, and (ii) are not
derivative works of the Program.
-"Contributor" means any person or entity that distributes the Program.
-"Licensed Patents " mean patent claims licensable by a Contributor which are
necessarily infringed by the use or sale of its Contribution alone or when
combined with the Program.
-"Program" means the Contributions distributed in accordance with this Agreement.
-"Recipient" means anyone who receives the Program under this Agreement,
including all Contributors.
-2. GRANT OF RIGHTS
-a) Subject to the terms of this Agreement, each Contributor hereby grants
Recipient a non-exclusive, worldwide, royalty-free copyright license to
reproduce, prepare derivative works of, publicly display, publicly perform,
distribute and sublicense the Contribution of such Contributor, if any, and such
derivative works, in source code and object code form.
-b) Subject to the terms of this Agreement, each Contributor hereby grants
Recipient a non-exclusive, worldwide, royalty-free patent license under Licensed
Patents to make, use, sell, offer to sell, import and otherwise transfer the
Contribution of such Contributor, if any, in source code and object code form.
This patent license shall apply to the combination of the Contribution and the
Program if, at the time the Contribution is added by the Contributor, such
addition of the Contribution causes such combination to be covered by the
Licensed Patents. The patent license shall not apply to any other combinations
which include the Contribution. No hardware per se is licensed hereunder.
-c) Recipient understands that although each Contributor grants the licenses
to its Contributions set forth herein, no assurances are provided by any
Contributor that the Program does not infringe the patent or other intellectual
property rights of any other entity. Each Contributor disclaims any liability to
Recipient for claims brought by any other entity based on infringement of
intellectual property rights or otherwise. As a condition to exercising the
rights and licenses granted hereunder, each Recipient hereby assumes sole
responsibility to secure any other intellectual property rights needed, if any.
For example, if a third party patent license is required to allow Recipient to
distribute the Program, it is Recipient's responsibility to acquire that license
before distributing the Program.
-d) Each Contributor represents that to its knowledge it has sufficient
copyright rights in its Contribution, if any, to grant the copyright license set
forth in this Agreement.
-3. REQUIREMENTS
-A Contributor may choose to distribute the Program in object code form under its
own license agreement, provided that:
-a) it complies with the terms and conditions of this Agreement; and
-b) its license agreement:
-i) effectively disclaims on behalf of all Contributors all warranties and
conditions, express and implied, including warranties or conditions of title and
non-infringement, and implied warranties or conditions of merchantability and
fitness for a particular purpose;
-ii) effectively excludes on behalf of all Contributors all liability for
damages, including direct, indirect, special, incidental and consequential
damages, such as lost profits;
-iii) states that any provisions which differ from this Agreement are offered
by that Contributor alone and not by any other party; and
-iv) states that source code for the Program is available from such
Contributor, and informs licensees how to obtain it in a reasonable manner on or
through a medium customarily used for software exchange.
-When the Program is made available in source code form:
-a) it must be made available under this Agreement; and
-b) a copy of this Agreement must be included with each copy of the Program.
-Contributors may not remove or alter any copyright notices contained within the
Program.
-Each Contributor must identify itself as the originator of its Contribution, if
any, in a manner that reasonably allows subsequent Recipients to identify the
originator of the Contribution.
-4. COMMERCIAL DISTRIBUTION
-Commercial distributors of software may accept certain responsibilities with
respect to end users, business partners and the like. While this license is
intended to facilitate the commercial use of the Program, the Contributor who
includes the Program in a commercial product offering should do so in a manner
which does not create potential liability for other Contributors. Therefore, if
a Contributor includes the Program in a commercial product offering, such
Contributor ("Commercial Contributor") hereby agrees to defend and indemnify
every other Contributor ("Indemnified Contributor") against any losses, damages
and costs (collectively "Losses") arising from claims, lawsuits and other legal
actions brought by a third party against the Indemnified Contributor to the
extent caused by the acts or omissions of such Commercial Contributor in
connection with its distribution of the Program in a commercial product
offering. The obligations in this section do not ap
ply to any claims or Losses
relating to any actual or alleged intellectual property infringement. In order
to qualify, an Indemnified Contributor must: a) promptly notify the Commercial
Contributor in writing of such claim, and b) allow the Commercial Contributor to
control, and cooperate with the Commercial Contributor in, the defense and any
related settlement negotiations. The Indemnified Contributor may participate in
any such claim at its own expense.
-For example, a Contributor might include the Program in a commercial product
offering, Product X. That Contributor is then a Commercial Contributor. If that
Commercial Contributor then makes performance claims, or offers warranties
related to Product X, those performance claims and warranties are such
Commercial Contributor's responsibility alone. Under this section, the
Commercial Contributor would have to defend claims against the other
Contributors related to those performance claims and warranties, and if a court
requires any other Contributor to pay any damages as a result, the Commercial
Contributor must pay those damages.
-5. NO WARRANTY
-EXCEPT AS EXPRESSLY SET FORTH IN THIS AGREEMENT, THE PROGRAM IS PROVIDED ON AN
"AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, EITHER EXPRESS OR
IMPLIED INCLUDING, WITHOUT LIMITATION, ANY WARRANTIES OR CONDITIONS OF TITLE,
NON-INFRINGEMENT, MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Each
Recipient is solely responsible for determining the appropriateness of using and
distributing the Program and assumes all risks associated with its exercise of
rights under this Agreement, including but not limited to the risks and costs of
program errors, compliance with applicable laws, damage to or loss of data,
programs or equipment, and unavailability or interruption of operations.
-6. DISCLAIMER OF LIABILITY
-EXCEPT AS EXPRESSLY SET FORTH IN THIS AGREEMENT, NEITHER RECIPIENT NOR ANY
CONTRIBUTORS SHALL HAVE ANY LIABILITY FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING WITHOUT LIMITATION LOST
PROFITS), HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
OUT OF THE USE OR DISTRIBUTION OF THE PROGRAM OR THE EXERCISE OF ANY RIGHTS
GRANTED HEREUNDER, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
-7. GENERAL
-If any provision of this Agreement is invalid or unenforceable under applicable
law, it shall not affect the validity or enforceability of the remainder of the
terms of this Agreement, and without further action by the parties hereto, such
provision shall be reformed to the minimum extent necessary to make such
provision valid and enforceable.
-If Recipient institutes patent litigation against a Contributor with respect to
a patent applicable to software (including a cross-claim or counterclaim in a
lawsuit), then any patent licenses granted by that Contributor to such Recipient
under this Agreement shall terminate as of the date such litigation is filed. In
addition, if Recipient institutes patent litigation against any entity
(including a cross-claim or counterclaim in a lawsuit) alleging that the Program
itself (excluding combinations of the Program with other software or hardware)
infringes such Recipient's patent(s), then such Recipient's rights granted under
Section 2(b) shall terminate as of the date such litigation is filed.
-All Recipient's rights under this Agreement shall terminate if it fails to
comply with any of the material terms or conditions of this Agreement and does
not cure such failure in a reasonable period of time after becoming aware of
such noncompliance. If all Recipient's rights under this Agreement terminate,
Recipient agrees to cease use and distribution of the Program as soon as
reasonably practicable. However, Recipient's obligations under this Agreement
and any licenses granted by Recipient relating to the Program shall continue and
survive.
-Everyone is permitted to copy and distribute copies of this Agreement, but in
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-==========================================================================================
-==========================================================================================
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-For puretls:
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-
-Last revised $Id: copyright-software-20021231.html,v 1.11 2004/07/06 16:02:49 slesch Exp $
-
-==========================================================================================
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-XML API library, org.w3c classes (xml-apis)
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<TRUNCATED>