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Posted to dev@spark.apache.org by Rachana Srivastava <Ra...@markmonitor.com> on 2015/12/16 22:01:28 UTC

RandomForestModel Save is throwing NoSuchMethodError with Spark Version 1.5x

final RandomForestModel model = RandomForest.trainClassifier(trainrdd, NUM_CLASSES,
                          categoricalFeaturesInfo, NUM_TREES, FEATURESUBSETSTRATEGY, IMPURITY, MAX_TREE_DEPTH, MAX_BIN, SEED);
model.save(sc.sc(), MODEL_DIRECTORY);

I have just these two packages in my maven folder

<dependency>
                                    <groupId>org.apache.spark</groupId>
                                    <artifactId>spark-streaming-kafka_2.11</artifactId>
                                    <version>${spark.version}</version>
                        </dependency>
                        <dependency>
                                    <groupId>org.apache.spark</groupId>
                                    <artifactId>spark-mllib_2.11</artifactId>
                                    <version>${spark.version}</version>
                        </dependency>
            </dependencies>

Maven dependency Tree:

+- org.apache.spark:spark-streaming-kafka_2.11:jar:1.5.2:compile
[INFO] |  +- org.apache.kafka:kafka_2.11:jar:0.8.2.1:compile
[INFO] |  |  +- org.scala-lang.modules:scala-xml_2.11:jar:1.0.2:compile
[INFO] |  |  +- com.yammer.metrics:metrics-core:jar:2.2.0:compile
[INFO] |  |  +- org.scala-lang.modules:scala-parser-combinators_2.11:jar:1.0.2:compile
[INFO] |  |  +- com.101tec:zkclient:jar:0.3:compile
[INFO] |  |  +- org.scala-lang:scala-library:jar:2.11.5:compile
[INFO] |  |  \- org.apache.kafka:kafka-clients:jar:0.8.2.1:compile
[INFO] |  \- org.spark-project.spark:unused:jar:1.0.0:compile
[INFO] \- org.apache.spark:spark-mllib_2.11:jar:1.5.2:compile
[INFO]    +- org.apache.spark:spark-core_2.11:jar:1.5.2:compile
[INFO]    |  +- org.apache.avro:avro-mapred:jar:hadoop2:1.7.7:compile
[INFO]    |  |  +- org.apache.avro:avro-ipc:jar:1.7.7:compile
[INFO]    |  |  |  \- org.apache.avro:avro:jar:1.7.7:compile
[INFO]    |  |  +- org.apache.avro:avro-ipc:jar:tests:1.7.7:compile
[INFO]    |  |  +- org.codehaus.jackson:jackson-core-asl:jar:1.9.13:compile
[INFO]    |  |  \- org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13:compile
[INFO]    |  +- com.twitter:chill_2.11:jar:0.5.0:compile
[INFO]    |  |  \- com.esotericsoftware.kryo:kryo:jar:2.21:compile
[INFO]    |  |     +- com.esotericsoftware.reflectasm:reflectasm:jar:shaded:1.07:compile
[INFO]    |  |     +- com.esotericsoftware.minlog:minlog:jar:1.2:compile
[INFO]    |  |     \- org.objenesis:objenesis:jar:1.2:compile
[INFO]    |  +- com.twitter:chill-java:jar:0.5.0:compile
[INFO]    |  +- org.apache.hadoop:hadoop-client:jar:2.2.0:compile
[INFO]    |  |  +- org.apache.hadoop:hadoop-common:jar:2.2.0:compile
[INFO]    |  |  |  +- commons-cli:commons-cli:jar:1.2:compile
[INFO]    |  |  |  +- org.apache.commons:commons-math:jar:2.1:compile
[INFO]    |  |  |  +- xmlenc:xmlenc:jar:0.52:compile
[INFO]    |  |  |  +- commons-configuration:commons-configuration:jar:1.6:compile
[INFO]    |  |  |  |  +- commons-collections:commons-collections:jar:3.2.1:compile
[INFO]    |  |  |  |  +- commons-digester:commons-digester:jar:1.8:compile
[INFO]    |  |  |  |  |  \- commons-beanutils:commons-beanutils:jar:1.7.0:compile
[INFO]    |  |  |  |  \- commons-beanutils:commons-beanutils-core:jar:1.8.0:compile
[INFO]    |  |  |  +- org.apache.hadoop:hadoop-auth:jar:2.2.0:compile
[INFO]    |  |  |  \- org.apache.commons:commons-compress:jar:1.4.1:compile
[INFO]    |  |  |     \- org.tukaani:xz:jar:1.0:compile
[INFO]    |  |  +- org.apache.hadoop:hadoop-hdfs:jar:2.2.0:compile
[INFO]    |  |  |  \- org.mortbay.jetty:jetty-util:jar:6.1.26:compile
[INFO]    |  |  +- org.apache.hadoop:hadoop-mapreduce-client-app:jar:2.2.0:compile
[INFO]    |  |  |  +- org.apache.hadoop:hadoop-mapreduce-client-common:jar:2.2.0:compile
[INFO]    |  |  |  |  +- org.apache.hadoop:hadoop-yarn-client:jar:2.2.0:compile
[INFO]    |  |  |  |  \- org.apache.hadoop:hadoop-yarn-server-common:jar:2.2.0:compile
[INFO]    |  |  |  \- org.apache.hadoop:hadoop-mapreduce-client-shuffle:jar:2.2.0:compile
[INFO]    |  |  +- org.apache.hadoop:hadoop-yarn-api:jar:2.2.0:compile
[INFO]    |  |  +- org.apache.hadoop:hadoop-mapreduce-client-core:jar:2.2.0:compile
[INFO]    |  |  |  \- org.apache.hadoop:hadoop-yarn-common:jar:2.2.0:compile
[INFO]    |  |  +- org.apache.hadoop:hadoop-mapreduce-client-jobclient:jar:2.2.0:compile
[INFO]    |  |  \- org.apache.hadoop:hadoop-annotations:jar:2.2.0:compile
[INFO]    |  +- org.apache.spark:spark-launcher_2.11:jar:1.5.2:compile
[INFO]    |  +- org.apache.spark:spark-network-common_2.11:jar:1.5.2:compile
[INFO]    |  +- org.apache.spark:spark-network-shuffle_2.11:jar:1.5.2:compile
[INFO]    |  +- org.apache.spark:spark-unsafe_2.11:jar:1.5.2:compile
[INFO]    |  +- net.java.dev.jets3t:jets3t:jar:0.7.1:compile
[INFO]    |  |  \- commons-httpclient:commons-httpclient:jar:3.1:compile
[INFO]    |  +- org.apache.curator:curator-recipes:jar:2.4.0:compile
[INFO]    |  |  +- org.apache.curator:curator-framework:jar:2.4.0:compile
[INFO]    |  |  +- org.apache.zookeeper:zookeeper:jar:3.4.5:compile
[INFO]    |  |  |  \- jline:jline:jar:0.9.94:compile
[INFO]    |  |  \- com.google.guava:guava:jar:14.0.1:compile
[INFO]    |  +- org.eclipse.jetty.orbit:javax.servlet:jar:3.0.0.v201112011016:compile
[INFO]    |  +- org.apache.commons:commons-lang3:jar:3.3.2:compile
[INFO]    |  +- org.slf4j:jul-to-slf4j:jar:1.7.10:compile
[INFO]    |  +- org.slf4j:jcl-over-slf4j:jar:1.7.10:compile
[INFO]    |  +- com.ning:compress-lzf:jar:1.0.3:compile
[INFO]    |  +- org.xerial.snappy:snappy-java:jar:1.1.1.7:compile
[INFO]    |  +- net.jpountz.lz4:lz4:jar:1.3.0:compile
[INFO]    |  +- org.roaringbitmap:RoaringBitmap:jar:0.4.5:compile
[INFO]    |  +- commons-net:commons-net:jar:2.2:compile
[INFO]    |  +- com.typesafe.akka:akka-remote_2.11:jar:2.3.11:compile
[INFO]    |  |  +- com.typesafe.akka:akka-actor_2.11:jar:2.3.11:compile
[INFO]    |  |  |  \- com.typesafe:config:jar:1.2.1:compile
[INFO]    |  |  +- io.netty:netty:jar:3.8.0.Final:compile
[INFO]    |  |  +- com.google.protobuf:protobuf-java:jar:2.5.0:compile
[INFO]    |  |  \- org.uncommons.maths:uncommons-maths:jar:1.2.2a:compile
[INFO]    |  +- com.typesafe.akka:akka-slf4j_2.11:jar:2.3.11:compile
[INFO]    |  +- org.json4s:json4s-jackson_2.11:jar:3.2.10:compile
[INFO]    |  |  \- org.json4s:json4s-core_2.11:jar:3.2.10:compile
[INFO]    |  |     +- org.json4s:json4s-ast_2.11:jar:3.2.10:compile
[INFO]    |  |     \- org.scala-lang:scalap:jar:2.11.0:compile
[INFO]    |  |        \- org.scala-lang:scala-compiler:jar:2.11.0:compile
[INFO]    |  +- com.sun.jersey:jersey-server:jar:1.9:compile
[INFO]    |  |  \- asm:asm:jar:3.1:compile
[INFO]    |  +- com.sun.jersey:jersey-core:jar:1.9:compile
[INFO]    |  +- org.apache.mesos:mesos:jar:shaded-protobuf:0.21.1:compile
[INFO]    |  +- io.netty:netty-all:jar:4.0.29.Final:compile
[INFO]    |  +- com.clearspring.analytics:stream:jar:2.7.0:compile
[INFO]    |  +- io.dropwizard.metrics:metrics-core:jar:3.1.2:compile
[INFO]    |  +- io.dropwizard.metrics:metrics-jvm:jar:3.1.2:compile
[INFO]    |  +- io.dropwizard.metrics:metrics-json:jar:3.1.2:compile
[INFO]    |  +- io.dropwizard.metrics:metrics-graphite:jar:3.1.2:compile
[INFO]    |  +- com.fasterxml.jackson.core:jackson-databind:jar:2.4.4:compile
[INFO]    |  |  +- com.fasterxml.jackson.core:jackson-annotations:jar:2.4.0:compile
[INFO]    |  |  \- com.fasterxml.jackson.core:jackson-core:jar:2.4.4:compile
[INFO]    |  +- com.fasterxml.jackson.module:jackson-module-scala_2.11:jar:2.4.4:compile
[INFO]    |  |  +- org.scala-lang:scala-reflect:jar:2.11.2:compile
[INFO]    |  |  \- com.thoughtworks.paranamer:paranamer:jar:2.6:compile
[INFO]    |  +- org.apache.ivy:ivy:jar:2.4.0:compile
[INFO]    |  +- oro:oro:jar:2.0.8:compile
[INFO]    |  +- org.tachyonproject:tachyon-client:jar:0.7.1:compile
[INFO]    |  |  +- commons-lang:commons-lang:jar:2.4:compile
[INFO]    |  |  +- commons-io:commons-io:jar:2.4:compile
[INFO]    |  |  +- org.apache.curator:curator-client:jar:2.1.0-incubating:compile
[INFO]    |  |  +- org.tachyonproject:tachyon-underfs-hdfs:jar:0.7.1:compile
[INFO]    |  |  \- org.tachyonproject:tachyon-underfs-local:jar:0.7.1:compile
[INFO]    |  +- net.razorvine:pyrolite:jar:4.4:compile
[INFO]    |  \- net.sf.py4j:py4j:jar:0.8.2.1:compile
[INFO]    +- org.apache.spark:spark-streaming_2.11:jar:1.5.2:compile
[INFO]    +- org.apache.spark:spark-sql_2.11:jar:1.5.2:compile
[INFO]    |  +- org.apache.spark:spark-catalyst_2.11:jar:1.5.2:compile
[INFO]    |  |  \- org.codehaus.janino:janino:jar:2.7.8:compile
[INFO]    |  |     \- org.codehaus.janino:commons-compiler:jar:2.7.8:compile
[INFO]    |  +- org.apache.parquet:parquet-column:jar:1.7.0:compile
[INFO]    |  |  +- org.apache.parquet:parquet-common:jar:1.7.0:compile
[INFO]    |  |  \- org.apache.parquet:parquet-encoding:jar:1.7.0:compile
[INFO]    |  |     \- org.apache.parquet:parquet-generator:jar:1.7.0:compile
[INFO]    |  \- org.apache.parquet:parquet-hadoop:jar:1.7.0:compile
[INFO]    |     +- org.apache.parquet:parquet-format:jar:2.3.0-incubating:compile
[INFO]    |     \- org.apache.parquet:parquet-jackson:jar:1.7.0:compile
[INFO]    +- org.apache.spark:spark-graphx_2.11:jar:1.5.2:compile
[INFO]    |  +- com.github.fommil.netlib:core:jar:1.1.2:compile
[INFO]    |  \- net.sourceforge.f2j:arpack_combined_all:jar:0.1:compile
[INFO]    +- org.scalanlp:breeze_2.11:jar:0.11.2:compile
[INFO]    |  +- org.scalanlp:breeze-macros_2.11:jar:0.11.2:compile
[INFO]    |  +- net.sf.opencsv:opencsv:jar:2.3:compile
[INFO]    |  +- com.github.rwl:jtransforms:jar:2.4.0:compile
[INFO]    |  \- org.spire-math:spire_2.11:jar:0.7.4:compile
[INFO]    |     \- org.spire-math:spire-macros_2.11:jar:0.7.4:compile
[INFO]    +- org.apache.commons:commons-math3:jar:3.4.1:compile
[INFO]    \- org.jpmml:pmml-model:jar:1.1.15:compile
[INFO]       +- org.jpmml:pmml-agent:jar:1.1.15:compile
[INFO]       +- org.jpmml:pmml-schema:jar:1.1.15:compile
[INFO]       \- com.sun.xml.bind:jaxb-impl:jar:2.2.7:compile
[INFO]          \- com.sun.xml.bind:jaxb-core:jar:2.2.7:compile
[INFO]             \- javax.xml.bind:jaxb-api:jar:2.2.7:compile

Exception Details:

ERROR: org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation - Aborting job.
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 22.0 failed 1 times, most recent failure: Lost task 0.0 in stage 22.0 (TID 230, localhost): java.lang.NoSuchMethodError: parquet.schema.Types$GroupBuilder.addField(Lparquet/schema/Type;)Lparquet/schema/Types$BaseGroupBuilder;
                at org.apache.spark.sql.execution.datasources.parquet.CatalystSchemaConverter$$anonfun$convertField$1.apply(CatalystSchemaConverter.scala:517)
                at org.apache.spark.sql.execution.datasources.parquet.CatalystSchemaConverter$$anonfun$convertField$1.apply(CatalystSchemaConverter.scala:516)
                at scala.collection.IndexedSeqOptimized$class.foldl(IndexedSeqOptimized.scala:51)
                at scala.collection.IndexedSeqOptimized$class.foldLeft(IndexedSeqOptimized.scala:60)
                at scala.collection.mutable.ArrayOps$ofRef.foldLeft(ArrayOps.scala:108)
                at org.apache.spark.sql.execution.datasources.parquet.CatalystSchemaConverter.convertField(CatalystSchemaConverter.scala:516)
                at org.apache.spark.sql.execution.datasources.parquet.CatalystSchemaConverter.convertField(CatalystSchemaConverter.scala:312)
                at org.apache.spark.sql.execution.datasources.parquet.CatalystSchemaConverter$$anonfun$convert$1.apply(CatalystSchemaConverter.scala:305)
                at org.apache.spark.sql.execution.datasources.parquet.CatalystSchemaConverter$$anonfun$convert$1.apply(CatalystSchemaConverter.scala:305)
                at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
                at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
                at scala.collection.Iterator$class.foreach(Iterator.scala:727)
                at scala.collection.AbstractIterator.foreach(Iterator.scala:1157)
                at scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
                at org.apache.spark.sql.types.StructType.foreach(StructType.scala:92)
                at scala.collection.TraversableLike$class.map(TraversableLike.scala:244)
                at org.apache.spark.sql.types.StructType.map(StructType.scala:92)
                at org.apache.spark.sql.execution.datasources.parquet.CatalystSchemaConverter.convert(CatalystSchemaConverter.scala:305)
                at org.apache.spark.sql.execution.datasources.parquet.ParquetTypesConverter$.convertFromAttributes(ParquetTypesConverter.scala:58)
                at org.apache.spark.sql.execution.datasources.parquet.RowWriteSupport.init(ParquetTableSupport.scala:55)
                at parquet.hadoop.ParquetOutputFormat.getRecordWriter(ParquetOutputFormat.java:287)
                at parquet.hadoop.ParquetOutputFormat.getRecordWriter(ParquetOutputFormat.java:261)
                at org.apache.spark.sql.execution.datasources.parquet.ParquetOutputWriter.<init>(ParquetRelation.scala:94)
                at org.apache.spark.sql.execution.datasources.parquet.ParquetRelation$$anon$3.newInstance(ParquetRelation.scala:272)
                at org.apache.spark.sql.execution.datasources.DefaultWriterContainer.writeRows(WriterContainer.scala:233)
                at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1$$anonfun$apply$mcV$sp$3.apply(InsertIntoHadoopFsRelation.scala:150)
                at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelation$$anonfun$run$1$$anonfun$apply$mcV$sp$3.apply(InsertIntoHadoopFsRelation.scala:150)
                at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
                at org.apache.spark.scheduler.Task.run(Task.scala:88)
                at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
                at java.lang.Thread.run(Thread.java:745)