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Posted to dev@airavata.apache.org by Chathuri Wimalasena <ka...@gmail.com> on 2014/12/29 21:04:54 UTC
[VOTE] Apache Airavata release 0.14 - RC2
Apache Airavata PMC is pleased to call for a vote on the following
Apache Airavata 0.14 release candidate artifacts:
Detailed change log/release
notes:https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
PGP release keys (signed using
65541DBC):https://dist.apache.org/repos/dist/release/airavata/KEYS
Specific URL's:
GIT source tag:
*https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
<https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14>*
Source release:
*https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
<https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip>*
Binary Artifacts:
Airavata Server:
*https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
<https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip>*
*https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
<https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz>*
API Server
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
GFac Server
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
Orchestrator Server
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
Xbaya Distribution
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
Client SDKs
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
Maven staging repo:
*https://repository.apache.org/content/repositories/orgapacheairavata-1005
<https://repository.apache.org/content/repositories/orgapacheairavata-1005>*
Please verify the artifacts and vote. The vote will be open for
atleast 72 hours.
[ ] +1 approve
[ ] +0 no opinion
[ ] -1 disapprove (and reason why)
[ ] +1 approve
[ ] +0 no opinion
[ ] -1 disapprove (and reason why)
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Marlon Pierce <ma...@iu.edu>.
Given the holidays, I suggest we keep the vote on RC2 open until Jan 6th.
Marlon
On 12/29/14 3:04 PM, Chathuri Wimalasena wrote:
> Apache Airavata PMC is pleased to call for a vote on the following
> Apache Airavata 0.14 release candidate artifacts:
>
> Detailed change log/release
> notes:https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>
> All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>
> PGP release keys (signed using
> 65541DBC):https://dist.apache.org/repos/dist/release/airavata/KEYS
>
> Specific URL's:
> GIT source tag:
> *https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> <https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14>*
>
> Source release:
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip>*
>
> Binary Artifacts:
>
> Airavata Server:
>
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip>*
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz>*
>
> API Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>
> GFac Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>
> Orchestrator Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>
> Xbaya Distribution
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>
> Client SDKs
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>
>
> Maven staging repo:
> *https://repository.apache.org/content/repositories/orgapacheairavata-1005
> <https://repository.apache.org/content/repositories/orgapacheairavata-1005>*
>
> Please verify the artifacts and vote. The vote will be open for
> atleast 72 hours.
>
> [ ] +1 approve
> [ ] +0 no opinion
> [ ] -1 disapprove (and reason why)
>
> [ ] +1 approve
> [ ] +0 no opinion
> [ ] -1 disapprove (and reason why)
>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Marlon Pierce <ma...@iu.edu>.
OK, looks good.
56-56-179-213:tmp mpierce$ gpg2 --import KEYS
gpg: key 617DDBAD: "Suresh Marru (CODE SIGNING KEY) <sm...@apache.org>"
not changed
gpg: key 1BE72138: "Raminder Singh (CODE SIGNING KEY)
<ra...@apache.org>" not changed
gpg: key C659C4E7: "Saminda Wijeratne (CODE SIGNING KEY)
<sa...@apache.org>" not changed
gpg: key 581042B4: "Lahiru Gunathilake <la...@apache.org>" not changed
gpg: key 1A1D9FAA: "amilaj (AmilaJ's key) <am...@apache.org>" not changed
gpg: key AC906050: "Chathuri Wimalasena <ka...@gmail.com>" not changed
gpg: key AC906050: "Chathuri Wimalasena <ka...@gmail.com>" not changed
gpg: key 65541DBC: "Chathuri Wimalasena (GPG Key) <ch...@apache.org>"
1 new signature
gpg: key AC906050: "Chathuri Wimalasena <ka...@gmail.com>" not changed
gpg: Total number processed: 9
gpg: unchanged: 8
gpg: new signatures: 1
gpg: 3 marginal(s) needed, 1 complete(s) needed, PGP trust model
gpg: depth: 0 valid: 2 signed: 1 trust: 0-, 0q, 0n, 0m, 0f, 2u
gpg: depth: 1 valid: 1 signed: 0 trust: 1-, 0q, 0n, 0m, 0f, 0u
gpg: next trustdb check due at 2015-08-18
On 1/6/15 3:14 PM, Chathuri Wimalasena wrote:
> When you do gpg --import KEYS, it shows my key Marlon.
>
> On Tue, Jan 6, 2015 at 3:10 PM, Marlon Pierce <ma...@iu.edu> wrote:
>
>> Hi Chathuri--
>>
>> Is the KEYS file correct (https://dist.apache.org/
>> repos/dist/release/airavata/KEYS)? I don't see your key.
>>
>> Marlon
>>
>> On 12/29/14 3:04 PM, Chathuri Wimalasena wrote:
>>
>>> Apache Airavata PMC is pleased to call for a vote on the following
>>> Apache Airavata 0.14 release candidate artifacts:
>>>
>>> Detailed change log/release
>>> notes:https://git-wip-us.apache.org/repos/asf?p=
>>> airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>>
>>> All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.
>>> 14/RC2/
>>>
>>> PGP release keys (signed using
>>> 65541DBC):https://dist.apache.org/repos/dist/release/airavata/KEYS
>>>
>>> Specific URL's:
>>> GIT source tag:
>>> *https://git-wip-us.apache.org/repos/asf?p=airavata.git;
>>> a=shortlog;h=refs/tags/airavata-0.14
>>> <https://git-wip-us.apache.org/repos/asf?p=airavata.git;
>>> a=shortlog;h=refs/tags/airavata-0.14>*
>>>
>>> Source release:
>>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/airavata-0.14-source-release.zip
>>> <https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/airavata-0.14-source-release.zip>*
>>>
>>> Binary Artifacts:
>>>
>>> Airavata Server:
>>>
>>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/apache-airavata-server-0.14-bin.zip
>>> <https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/apache-airavata-server-0.14-bin.zip>*
>>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/apache-airavata-server-0.14-bin.tar.gz
>>> <https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/apache-airavata-server-0.14-bin.tar.gz>*
>>>
>>> API Server
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-api-server-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-api-server-0.14-bin.zip
>>>
>>> GFac Server
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-gfac-server-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-gfac-server-0.14-bin.zip
>>>
>>> Orchestrator Server
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-orchestrator-server-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-orchestrator-server-0.14-bin.zip
>>>
>>> Xbaya Distribution
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-xbaya-gui-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-xbaya-gui-0.14-bin.zip
>>>
>>> Client SDKs
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-client-java-sdk-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-client-java-sdk-0.14-bin.zip
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-client-php-sdk-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-client-php-sdk-0.14-bin.zip
>>>
>>>
>>> Maven staging repo:
>>> *https://repository.apache.org/content/repositories/
>>> orgapacheairavata-1005
>>> <https://repository.apache.org/content/repositories/
>>> orgapacheairavata-1005>*
>>>
>>> Please verify the artifacts and vote. The vote will be open for
>>> atleast 72 hours.
>>>
>>> [ ] +1 approve
>>> [ ] +0 no opinion
>>> [ ] -1 disapprove (and reason why)
>>>
>>> [ ] +1 approve
>>> [ ] +0 no opinion
>>> [ ] -1 disapprove (and reason why)
>>>
>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Chathuri Wimalasena <ka...@gmail.com>.
When you do gpg --import KEYS, it shows my key Marlon.
On Tue, Jan 6, 2015 at 3:10 PM, Marlon Pierce <ma...@iu.edu> wrote:
> Hi Chathuri--
>
> Is the KEYS file correct (https://dist.apache.org/
> repos/dist/release/airavata/KEYS)? I don't see your key.
>
> Marlon
>
> On 12/29/14 3:04 PM, Chathuri Wimalasena wrote:
>
>> Apache Airavata PMC is pleased to call for a vote on the following
>> Apache Airavata 0.14 release candidate artifacts:
>>
>> Detailed change log/release
>> notes:https://git-wip-us.apache.org/repos/asf?p=
>> airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>
>> All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.
>> 14/RC2/
>>
>> PGP release keys (signed using
>> 65541DBC):https://dist.apache.org/repos/dist/release/airavata/KEYS
>>
>> Specific URL's:
>> GIT source tag:
>> *https://git-wip-us.apache.org/repos/asf?p=airavata.git;
>> a=shortlog;h=refs/tags/airavata-0.14
>> <https://git-wip-us.apache.org/repos/asf?p=airavata.git;
>> a=shortlog;h=refs/tags/airavata-0.14>*
>>
>> Source release:
>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>> RC2/airavata-0.14-source-release.zip
>> <https://dist.apache.org/repos/dist/dev/airavata/0.14/
>> RC2/airavata-0.14-source-release.zip>*
>>
>> Binary Artifacts:
>>
>> Airavata Server:
>>
>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>> RC2/apache-airavata-server-0.14-bin.zip
>> <https://dist.apache.org/repos/dist/dev/airavata/0.14/
>> RC2/apache-airavata-server-0.14-bin.zip>*
>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>> RC2/apache-airavata-server-0.14-bin.tar.gz
>> <https://dist.apache.org/repos/dist/dev/airavata/0.14/
>> RC2/apache-airavata-server-0.14-bin.tar.gz>*
>>
>> API Server
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-api-server-0.14-bin.tar.gz
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-api-server-0.14-bin.zip
>>
>> GFac Server
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-gfac-server-0.14-bin.tar.gz
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-gfac-server-0.14-bin.zip
>>
>> Orchestrator Server
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-orchestrator-server-0.14-bin.tar.gz
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-orchestrator-server-0.14-bin.zip
>>
>> Xbaya Distribution
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-airavata-xbaya-gui-0.14-bin.tar.gz
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-airavata-xbaya-gui-0.14-bin.zip
>>
>> Client SDKs
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-airavata-client-java-sdk-0.14-bin.tar.gz
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-airavata-client-java-sdk-0.14-bin.zip
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-airavata-client-php-sdk-0.14-bin.tar.gz
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>> apache-airavata-client-php-sdk-0.14-bin.zip
>>
>>
>> Maven staging repo:
>> *https://repository.apache.org/content/repositories/
>> orgapacheairavata-1005
>> <https://repository.apache.org/content/repositories/
>> orgapacheairavata-1005>*
>>
>> Please verify the artifacts and vote. The vote will be open for
>> atleast 72 hours.
>>
>> [ ] +1 approve
>> [ ] +0 no opinion
>> [ ] -1 disapprove (and reason why)
>>
>> [ ] +1 approve
>> [ ] +0 no opinion
>> [ ] -1 disapprove (and reason why)
>>
>>
>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Marlon Pierce <ma...@iu.edu>.
Hi Chathuri--
Is the KEYS file correct
(https://dist.apache.org/repos/dist/release/airavata/KEYS)? I don't see
your key.
Marlon
On 12/29/14 3:04 PM, Chathuri Wimalasena wrote:
> Apache Airavata PMC is pleased to call for a vote on the following
> Apache Airavata 0.14 release candidate artifacts:
>
> Detailed change log/release
> notes:https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>
> All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>
> PGP release keys (signed using
> 65541DBC):https://dist.apache.org/repos/dist/release/airavata/KEYS
>
> Specific URL's:
> GIT source tag:
> *https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> <https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14>*
>
> Source release:
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip>*
>
> Binary Artifacts:
>
> Airavata Server:
>
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip>*
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz>*
>
> API Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>
> GFac Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>
> Orchestrator Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>
> Xbaya Distribution
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>
> Client SDKs
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>
>
> Maven staging repo:
> *https://repository.apache.org/content/repositories/orgapacheairavata-1005
> <https://repository.apache.org/content/repositories/orgapacheairavata-1005>*
>
> Please verify the artifacts and vote. The vote will be open for
> atleast 72 hours.
>
> [ ] +1 approve
> [ ] +0 no opinion
> [ ] -1 disapprove (and reason why)
>
> [ ] +1 approve
> [ ] +0 no opinion
> [ ] -1 disapprove (and reason why)
>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by K Yoshimoto <ke...@sdsc.edu>.
Okay, I'll see how far I get and then look into either modifying
the thrift files or using the java.
On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> Hi Kenneth--
>
> You'll probably run into problems with the python bindings, but it is an
> easy fix (I think). The thrift files need to specify the language
> bindings you want. Only three of the thrift files have python bindings
> set up.
>
> Marlon
>
>
> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> "namespace py" {} \;
> ./airavataAPI.thrift
> ./airavataErrors.thrift
> ./workflowAPI.thrift
>
>
> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> >Okay, looks like the C in Compute needs to be capitalized.
> >I must have typoed that.
> >
> >On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> >>Marlon,
> >>
> >> I can do the startup with ./airavata-server.sh for now.
> >>
> >> I'm trying to go through the steps of creating my own app and
> >>launching it using the Python client. I ran into a problem with
> >>a method not found in the client:
> >>
> >>In
> >>airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> >>
> >>./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> >>Unrecognized method getAllcomputeResourceNames
> >>
> >> Should the python client be up-to-date?
> >>
> >>Kenneth
> >>
> >>On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> >>>Hi Ken--
> >>>
> >>>Thanks--feel free to fix the startup script and submit a patch.
> >>>
> >>>Marlon
> >>>
> >>>On 1/8/15 6:28 PM, K Yoshimoto wrote:
> >>>>I grabbed the source release from
> >>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>
> >>>>and built that. The server startup script is still broken for
> >>>>Ubuntu when run as the quick start describes (sh airavata-server.sh),
> >>>>but works when invoked as ./airavata-server.sh.
> >>>>
> >>>>Registering sample apps and xbaya workflow construction work.
> >>>>Not sure when the xbaya workflow construction would be useful?
> >>>>Running the workflow generates output in /tmp.
> >>>>
> >>>>I would like to try creating new experiments and running them.
> >>>>I will be playing with the python client. Are all the samples in
> >>>>airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> >>>>
> >>>>up-to-date? I'll probably go by them to try registering new experiments
> >>>>and running them with the python client, unless anyone has documentation
> >>>>handy.
> >>>>
> >>>>Kenneth
> >>>>
> >>>>On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> >>>>>We also run the server components (not XBaya) full time and run daily
> >>>>>tests against it as part of test-drive.airavata.org.
> >>>>>
> >>>>>Marlon
> >>>>>
> >>>>>On 1/7/15 12:31 PM, K Yoshimoto wrote:
> >>>>>>Was it stable enough to use outside the demo? Any problems to note?
> >>>>>>
> >>>>>>On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> >>>>>>>+ 1 for the release.
> >>>>>>>
> >>>>>>>P.S. I was able to demo this RC2 in a talk and couple of participants
> >>>>>>>followed along successfully.
> >>>>>>>
> >>>>>>>
> >>>>>>>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> >>>>>>><ka...@gmail.com>
> >>>>>>>wrote:
> >>>>>>>
> >>>>>>>>Apache Airavata PMC is pleased to call for a vote on the following
> >>>>>>>>Apache Airavata 0.14 release candidate artifacts:
> >>>>>>>>
> >>>>>>>>Detailed change log/release notes:
> >>>>>>>>
> >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>All Release Artifacts:
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>PGP release keys (signed using 65541DBC):
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/release/airavata/KEYS
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>Specific URL's:
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>GIT source tag:
> >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >>>>>>>>
> >>>>>>>>Source release:
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >>>>>>>>
> >>>>>>>>Binary Artifacts:
> >>>>>>>>
> >>>>>>>>Airavata Server:
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >>>>>>>>
> >>>>>>>>API Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>GFac Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Orchestrator Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Xbaya Distribution
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Client SDKs
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Maven staging repo:
> >>>>>>>>https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >>>>>>>>
> >>>>>>>>Please verify the artifacts and vote. The vote will be open for
> >>>>>>>>atleast
> >>>>>>>>72 hours.
> >>>>>>>>
> >>>>>>>>[ ] +1 approve
> >>>>>>>>[ ] +0 no opinion
> >>>>>>>>[ ] -1 disapprove (and reason why)
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>[ ] +1 approve
> >>>>>>>>[ ] +0 no opinion
> >>>>>>>>[ ] -1 disapprove (and reason why)
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
Re: job description in experiment creation?
Posted by Raminder Singh <ra...@gmail.com>.
You need to set the input/output values as part of createExperiment. The best way to use following function to get the input/outputs and then pass them to experiment. You can also set the value like the example below. We need to come with a validation for required fields while creating experiment. Ideally, we should not use default value as file path can be machine specific and experiment may fail for that reason.
List<InputDataObjectType> exInputs = client.getApplicationInputs(appId);
for (InputDataObjectType inputDataObjectType : exInputs) {
if (inputDataObjectType.getName().equalsIgnoreCase(“Input1")) {
inputDataObjectType.setValue(“<value>");
} else if (inputDataObjectType.getName().equalsIgnoreCase(“Input2")) {
inputDataObjectType.setValue(“<value>");
}
}
List<OutputDataObjectType> exOut = client.getApplicationOutputs(appId);
Please let me know if you have more questions.
Thanks
Raminder
On Jan 28, 2015, at 1:47 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> Using the 'value' attribute to send in a commandline arg works
> in createExperiment, but not in registerApplicationInterface.
> Is the default in registerApplicationInterface supposed to be used
> when launchExperiment is executed?
>
>
> On Mon, Jan 26, 2015 at 01:57:26PM -0500, Chathuri Wimalasena wrote:
>> Hi Kenneth,
>>
>> If it is an argument that you need to be added to the pbs script, you need
>> to set it as an "application argument". Value field is to set the actual
>> value of the input which should be set at the time of experiment creation
>> unless it is a default value.
>>
>> Thanks..
>> Chathuri
>>
>> On Mon, Jan 26, 2015 at 1:39 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>>
>>>
>>> I've been able to create and launch an experiment with the
>>> python API client. The application does not see the argument
>>> I'm trying to pass in. I'm trying to set this with the
>>> registerApplicationInterface function. Maybe my problem
>>> is the InputDataObjectType? Should I be using 'value' or
>>> 'applicationArgument' or something else?
>>>
>>> On Fri, Jan 23, 2015 at 04:28:33PM -0800, K Yoshimoto wrote:
>>>>
>>>> Looks like the experiment did run, though. Output was in
>>>> the stdout file, rather than in the output dir...
>>>>
>>>> On Fri, Jan 23, 2015 at 04:14:05PM -0800, K Yoshimoto wrote:
>>>>>
>>>>> I added input and output to my appinterface. Now, I'm seeing something
>>>>> on server side like this:
>>>>>
>>>>> [ERROR] could not parse XML document prolog; nested exception is:
>>>>> only whitespace content allowed before start tag and not {
>>> (position: START_DOCUMENT seen {... @1:1)
>>>>> could not parse XML document prolog; nested exception is:
>>>>> org.xmlpull.v1.XmlPullParserException: only whitespace content allowed
>>> before start tag and not { (position: START_DOCUMENT seen {... @1:1)
>>>>> at org.xmlpull.mxp1.MXParser.parseProlog(MXParser.java:1519)
>>>>> at org.xmlpull.mxp1.MXParser.nextImpl(MXParser.java:1395)
>>>>> at org.xmlpull.mxp1.MXParser.next(MXParser.java:1093)
>>>>>
>>>>>
>>>>>
>>>>> On Fri, Jan 23, 2015 at 11:36:31AM -0800, K Yoshimoto wrote:
>>>>>>
>>>>>> Here's the experiment and stack trace from server. It can't figure
>>>>>> out experiment type?
>>>>>>
>>>>>>
>>>>>> Experiment(userName='kenneth1',
>>> experimentOutputs=[OutputDataObjectType(type=None, name='dateout',
>>> value='5')], errors=None, applicationVersion=None, name='dateexperiment',
>>> workflowTemplateId=None,
>>> projectID='test1_057dc666-f81b-4ee2-ac26-db159341b4e7',
>>> stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1422041295249,
>>> workflowNodeState=7)], creationTime=1422041270814,
>>> workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_2cf34fd2-180b-4c17-bcd5-1127503cc308',
>>> errors=[], nodeName='IDontNeedaNode', nodeOutputs=[],
>>> executionUnitData=None,
>>> workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1422041295249,
>>> workflowNodeState=7), creationTime=1422041295222, executionUnit=1,
>>> taskDetailsList=[TaskDetails(applicationInputs=[], errors=[],
>>> applicationVersion=None,
>>> applicationOutputs=[OutputDataObjectType(type=None, name='dateout',
>>> value='5')], applicationDeploymentId=None, advancedOutputDataHandling=None,
>>> creationTime=None, dataTransferDetailsList=[],
>>> taskStatus=TaskStatus(timeOfStateChange=1422041295304, executionState=12),
>>> advancedInputDataHandling=None,
>>> taskID='IDontNeedaNode_865b9f5d-d0cd-45e4-846d-fceced124bd1',
>>> jobDetailsList=[],
>>> taskScheduling=ComputationalResourceScheduling(computationalProjectAccount='test',
>>> totalPhysicalMemory=1,
>>> resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc',
>>> numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1,
>>> totalCPUCount=1, queueName='normal'),
>>> applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070')],
>>> nodeInputs=[])],
>>> experimentID='dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2',
>>> workflowTemplateVersion=None, workflowExecutionInstanceId=None,
>>> userConfigurationData=UserConfigurationData(advanceInputDataHandling=None,
>>> overrideManualScheduledParams=False, throttleResources=False,
>>> airavataAutoSchedule=False,
>>> computationalResourceScheduling=ComputationalResourceScheduling(computationalProjectAccount='test',
>>> totalPhysicalMemory=1,
>>> resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc',
>>> numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1,
>>> totalCPUCount=1, queueName='normal'), shareExperimentPublicly=False,
>>> qosParams=None, advanceOutputDataHandling=None), experimentInputs=[],
>>> experimentStatus=ExperimentStatus(timeOfStateChange=1422041270879,
>>> experimentState=0),
>>> applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070',
>>> description=None)
>>>>>>
>>>>>> [INFO] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 :
>>> Created new experiment with experiment name dateexperiment
>>>>>> [INFO] Validation of
>>> org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator
>>> is SUCCESSFUL
>>>>>> [INFO] Validation of
>>> org.apache.airavata.orchestrator.core.validator.impl.ExperimentStatusValidator
>>> is SUCCESSFUL
>>>>>> [ERROR] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 :
>>> Couldn't identify experiment type, experiment
>>> dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 is neither single
>>> application nor workflow.
>>>>>> [ERROR] Internal error processing launchExperiment
>>>>>> org.apache.thrift.TException: Experiment
>>> 'dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2' launch failed. Unable
>>> to figureout execution type for application
>>> test1name_77d3187b-93c6-4e97-944c-4e7792060070
>>>>>> at
>>> org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:209)
>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:509)
>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:494)
>>>>>> at
>>> org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>>>>>> at
>>> org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>>>>>> at
>>> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
>>>>>> at
>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
>>>>>> at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>>>>>> at java.lang.Thread.run(Thread.java:701)
>>>>>> [ERROR] Internal error processing launchExperiment
>>>>>> org.apache.thrift.TApplicationException: Internal error processing
>>> launchExperiment
>>>>>> at
>>> org.apache.thrift.TApplicationException.read(TApplicationException.java:111)
>>>>>> at
>>> org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:71)
>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_launchExperiment(OrchestratorService.java:192)
>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.launchExperiment(OrchestratorService.java:178)
>>>>>> at
>>> org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1119)
>>>>>> at
>>> org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
>>>>>> at
>>> org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
>>>>>> at
>>> org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>>>>>> at
>>> org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>>>>>> at
>>> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
>>>>>> at
>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
>>>>>> at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>>>>>> at java.lang.Thread.run(Thread.java:701)
>>>>>>
>>>>>> On Fri, Jan 23, 2015 at 09:57:55AM -0500, Raminder Singh wrote:
>>>>>>> Hi Kenneth,
>>>>>>>
>>>>>>> In case you are running jobs on local machine (localprovider) then
>>> the job description is filled from Application catalog > Application
>>> deployment description but incase of remote (SSH or GSISSH) its filled
>>> based on Job scheduler (PBS,SLURM) parameters. You can look in the provider
>>> codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please
>>> share the stacktrace so i can find more details. According to my
>>> understanding error should not be different for Xbaya or Python client.
>>> Share more information and i will debug to provide you more information.
>>>>>>>
>>>>>>> Thanks
>>>>>>> Raminder
>>>>>>>
>>>>>>> On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>>>>>>>
>>>>>>>>
>>>>>>>> I was able to launch the example experiment and get output
>>>>>>>> from the Xbaya quickstart:
>>>>>>>>
>>>>>>>>
>>> https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
>>>>>>>>
>>>>>>>> I am trying to create and launch my own custom experiment with
>>>>>>>> the Airavata-remote python client. However, I'm getting this
>>> error
>>>>>>>> on the server side:
>>>>>>>>
>>>>>>>> Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException:
>>> Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
>>>>>>>> INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID,
>>> COMPUTE_RESOURCE_CONSUMED,
>>>>>>>> CREATION_TIME, JOB_DESCRIPTION)
>>>>>>>> VALUES (?, ?, ?, ?, ?)
>>>>>>>> [params=(String)
>>> IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String)
>>> IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null,
>>> (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
>>>>>>>>
>>>>>>>>
>>>>>>>> Where does JOB_DESCRIPTION get input into the experiment?
>>>>>>>>
>>>>>>>> Kenneth
>>>>>>>>
>>>>>>>> On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
>>>>>>>>>
>>>>>>>>> Is there a difference in the experiments that get created
>>>>>>>>> through xbaya workflow creation and through commandline
>>>>>>>>> createExperiment? I can clone and run the xbaya experiment
>>>>>>>>> through the Python API client, but when I try creating my own
>>>>>>>>> experiment, the run fails. Perhaps someone can send out
>>>>>>>>> the attributes required by createExperiment for creating a
>>> runnable
>>>>>>>>> experiment on localhost?
>>>>>>>>>
>>>>>>>>> Kenneth
>>>>>>>>>
>>>>>>>>> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
>>>>>>>>>>
>>>>>>>>>> Marlon,
>>>>>>>>>>
>>>>>>>>>> I'm finding all the structures I'm trying to use. Do the other
>>>>>>>>>> thrift files get pulled in with the include lines?
>>>>>>>>>>
>>>>>>>>>> I got to the point of trying to launch an experiment but ran
>>> into
>>>>>>>>>> an error. Maybe I'm missing a field in my experiment? Does
>>> anyone
>>>>>>>>>> have a blow-by-blow set of steps for creating a project,
>>> creating
>>>>>>>>>> an experiment, launching the experiment?
>>>>>>>>>>
>>>>>>>>>> ./Airavata-remote -h localhost:8930 getAllUserExperiments
>>> kenneth1
>>>>>>>>>> [ Experiment(userName='kenneth1', experimentOutputs=[],
>>> errors=None, applicationVersion=None, name='dateexperiment',
>>> workflowTemplateId=None,
>>> projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea',
>>> stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906,
>>> workflowNodeState=7)], creationTime=1420844856258,
>>> workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826',
>>> errors=[], nodeName='IDontNeedaNode', nodeOutputs=[],
>>> executionUnitData=None,
>>> workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906,
>>> workflowNodeState=7), creationTime=1420844997871, executionUnit=1,
>>> taskDetailsList=[TaskDetails(applicationInputs=[], errors=[],
>>> applicationVersion=None, applicationOutputs=[],
>>> applicationDeploymentId=None, advancedOutputDataHandling=None,
>>> creationTime=None, dataTransferDetailsList=[],
>>> taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12),
>>> advancedInputDataHandling=None,
>>> taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675',
>>> jobDetailsList=[], taskScheduling=None,
>>> applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')],
>>> nodeInputs=[])],
>>> experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0',
>>> workflowTemplateVersion=None, workflowExecutionInstanceId=None,
>>> userConfigurationData=None, experimentInputs=[],
>>> experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279,
>>> experimentState=0),
>>> applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee',
>>> description=None)]
>>>>>>>>>>
>>>>>>>>>> ./Airavata-remote -h localhost:8930 launchExperiment
>>> dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
>>>>>>>>>> Traceback (most recent call last):
>>>>>>>>>> File "./Airavata-remote", line 301, in <module>
>>>>>>>>>> pp.pprint(client.launchExperiment(args[0],args[1],))
>>>>>>>>>> File
>>> "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py",
>>> line 2572, in launchExperiment
>>>>>>>>>> self.recv_launchExperiment()
>>>>>>>>>> File
>>> "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py",
>>> line 2589, in recv_launchExperiment
>>>>>>>>>> raise x
>>>>>>>>>> thrift.Thrift.TApplicationException: Internal error processing
>>> launchExperiment
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> From the server console:
>>>>>>>>>>
>>>>>>>>>> [ERROR] Error occurred during processing of message.
>>>>>>>>>> java.lang.NullPointerException
>>>>>>>>>> at
>>> org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
>>>>>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
>>>>>>>>>> at
>>> org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
>>>>>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
>>>>>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
>>>>>>>>>> at
>>> org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>>>>>>>>>> at
>>> org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>>>>>>>>>> at
>>> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
>>>>>>>>>> at
>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
>>>>>>>>>> at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>>>>>>>>>> at java.lang.Thread.run(Thread.java:701)
>>>>>>>>>> [ERROR] Internal error processing launchExperiment
>>>>>>>>>> org.apache.thrift.transport.TTransportException
>>>>>>>>>> at
>>> org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
>>>>>>>>>> at
>>> org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
>>>>>>>>>> at
>>> org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
>>>>>>>>>> at
>>> org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
>>>>>>>>>> at
>>> org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
>>>>>>>>>> at
>>> org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
>>>>>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
>>>>>>>>>> at
>>> org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
>>>>>>>>>> at
>>> org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
>>>>>>>>>> at
>>> org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
>>>>>>>>>> at
>>> org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
>>>>>>>>>> at
>>> org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>>>>>>>>>> at
>>> org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>>>>>>>>>> at
>>> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
>>>>>>>>>> at
>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
>>>>>>>>>> at
>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>>>>>>>>>> at java.lang.Thread.run(Thread.java:701)
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
>>>>>>>>>>> Hi Kenneth--
>>>>>>>>>>>
>>>>>>>>>>> You'll probably run into problems with the python bindings,
>>> but it is an
>>>>>>>>>>> easy fix (I think). The thrift files need to specify the
>>> language
>>>>>>>>>>> bindings you want. Only three of the thrift files have python
>>> bindings
>>>>>>>>>>> set up.
>>>>>>>>>>>
>>>>>>>>>>> Marlon
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> thrift-interface-descriptions mpierce$ find . -type f -exec
>>> grep -il
>>>>>>>>>>> "namespace py" {} \;
>>>>>>>>>>> ./airavataAPI.thrift
>>>>>>>>>>> ./airavataErrors.thrift
>>>>>>>>>>> ./workflowAPI.thrift
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
>>>>>>>>>>>> Okay, looks like the C in Compute needs to be capitalized.
>>>>>>>>>>>> I must have typoed that.
>>>>>>>>>>>>
>>>>>>>>>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
>>>>>>>>>>>>> Marlon,
>>>>>>>>>>>>>
>>>>>>>>>>>>> I can do the startup with ./airavata-server.sh for now.
>>>>>>>>>>>>>
>>>>>>>>>>>>> I'm trying to go through the steps of creating my own app
>>> and
>>>>>>>>>>>>> launching it using the Python client. I ran into a problem
>>> with
>>>>>>>>>>>>> a method not found in the client:
>>>>>>>>>>>>>
>>>>>>>>>>>>> In
>>>>>>>>>>>>>
>>> airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
>>>>>>>>>>>>>
>>>>>>>>>>>>> ./Airavata-remote -h localhost:8930
>>> getAllcomputeResourceNames
>>>>>>>>>>>>> Unrecognized method getAllcomputeResourceNames
>>>>>>>>>>>>>
>>>>>>>>>>>>> Should the python client be up-to-date?
>>>>>>>>>>>>>
>>>>>>>>>>>>> Kenneth
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce
>>> wrote:
>>>>>>>>>>>>>> Hi Ken--
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Thanks--feel free to fix the startup script and submit a
>>> patch.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Marlon
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
>>>>>>>>>>>>>>> I grabbed the source release from
>>>>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> and built that. The server startup script is still
>>> broken for
>>>>>>>>>>>>>>> Ubuntu when run as the quick start describes (sh
>>> airavata-server.sh),
>>>>>>>>>>>>>>> but works when invoked as ./airavata-server.sh.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Registering sample apps and xbaya workflow construction
>>> work.
>>>>>>>>>>>>>>> Not sure when the xbaya workflow construction would be
>>> useful?
>>>>>>>>>>>>>>> Running the workflow generates output in /tmp.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> I would like to try creating new experiments and running
>>> them.
>>>>>>>>>>>>>>> I will be playing with the python client. Are all the
>>> samples in
>>>>>>>>>>>>>>>
>>> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> up-to-date? I'll probably go by them to try registering
>>> new experiments
>>>>>>>>>>>>>>> and running them with the python client, unless anyone
>>> has documentation
>>>>>>>>>>>>>>> handy.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Kenneth
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce
>>> wrote:
>>>>>>>>>>>>>>>> We also run the server components (not XBaya) full time
>>> and run daily
>>>>>>>>>>>>>>>> tests against it as part of test-drive.airavata.org.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Marlon
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
>>>>>>>>>>>>>>>>> Was it stable enough to use outside the demo? Any
>>> problems to note?
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru
>>> wrote:
>>>>>>>>>>>>>>>>>> + 1 for the release.
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple
>>> of participants
>>>>>>>>>>>>>>>>>> followed along successfully.
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
>>>>>>>>>>>>>>>>>> <ka...@gmail.com>
>>>>>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on
>>> the following
>>>>>>>>>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Detailed change log/release notes:
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> All Release Artifacts:
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> PGP release keys (signed using 65541DBC):
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Specific URL's:
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> GIT source tag:
>>>>>>>>>>>>>>>>>>>
>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Source release:
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Binary Artifacts:
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Airavata Server:
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> API Server
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> GFac Server
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Orchestrator Server
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Xbaya Distribution
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Client SDKs
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
>>>>>>>>>>>>>>>>>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Maven staging repo:
>>>>>>>>>>>>>>>>>>>
>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> Please verify the artifacts and vote. The vote will
>>> be open for
>>>>>>>>>>>>>>>>>>> atleast
>>>>>>>>>>>>>>>>>>> 72 hours.
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> [ ] +1 approve
>>>>>>>>>>>>>>>>>>> [ ] +0 no opinion
>>>>>>>>>>>>>>>>>>> [ ] -1 disapprove (and reason why)
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>> [ ] +1 approve
>>>>>>>>>>>>>>>>>>> [ ] +0 no opinion
>>>>>>>>>>>>>>>>>>> [ ] -1 disapprove (and reason why)
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>>
>>>>>>>
>>>
Re: job description in experiment creation?
Posted by K Yoshimoto <ke...@sdsc.edu>.
Using the 'value' attribute to send in a commandline arg works
in createExperiment, but not in registerApplicationInterface.
Is the default in registerApplicationInterface supposed to be used
when launchExperiment is executed?
On Mon, Jan 26, 2015 at 01:57:26PM -0500, Chathuri Wimalasena wrote:
> Hi Kenneth,
>
> If it is an argument that you need to be added to the pbs script, you need
> to set it as an "application argument". Value field is to set the actual
> value of the input which should be set at the time of experiment creation
> unless it is a default value.
>
> Thanks..
> Chathuri
>
> On Mon, Jan 26, 2015 at 1:39 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> >
> > I've been able to create and launch an experiment with the
> > python API client. The application does not see the argument
> > I'm trying to pass in. I'm trying to set this with the
> > registerApplicationInterface function. Maybe my problem
> > is the InputDataObjectType? Should I be using 'value' or
> > 'applicationArgument' or something else?
> >
> > On Fri, Jan 23, 2015 at 04:28:33PM -0800, K Yoshimoto wrote:
> > >
> > > Looks like the experiment did run, though. Output was in
> > > the stdout file, rather than in the output dir...
> > >
> > > On Fri, Jan 23, 2015 at 04:14:05PM -0800, K Yoshimoto wrote:
> > > >
> > > > I added input and output to my appinterface. Now, I'm seeing something
> > > > on server side like this:
> > > >
> > > > [ERROR] could not parse XML document prolog; nested exception is:
> > > > only whitespace content allowed before start tag and not {
> > (position: START_DOCUMENT seen {... @1:1)
> > > > could not parse XML document prolog; nested exception is:
> > > > org.xmlpull.v1.XmlPullParserException: only whitespace content allowed
> > before start tag and not { (position: START_DOCUMENT seen {... @1:1)
> > > > at org.xmlpull.mxp1.MXParser.parseProlog(MXParser.java:1519)
> > > > at org.xmlpull.mxp1.MXParser.nextImpl(MXParser.java:1395)
> > > > at org.xmlpull.mxp1.MXParser.next(MXParser.java:1093)
> > > >
> > > >
> > > >
> > > > On Fri, Jan 23, 2015 at 11:36:31AM -0800, K Yoshimoto wrote:
> > > > >
> > > > > Here's the experiment and stack trace from server. It can't figure
> > > > > out experiment type?
> > > > >
> > > > >
> > > > > Experiment(userName='kenneth1',
> > experimentOutputs=[OutputDataObjectType(type=None, name='dateout',
> > value='5')], errors=None, applicationVersion=None, name='dateexperiment',
> > workflowTemplateId=None,
> > projectID='test1_057dc666-f81b-4ee2-ac26-db159341b4e7',
> > stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1422041295249,
> > workflowNodeState=7)], creationTime=1422041270814,
> > workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_2cf34fd2-180b-4c17-bcd5-1127503cc308',
> > errors=[], nodeName='IDontNeedaNode', nodeOutputs=[],
> > executionUnitData=None,
> > workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1422041295249,
> > workflowNodeState=7), creationTime=1422041295222, executionUnit=1,
> > taskDetailsList=[TaskDetails(applicationInputs=[], errors=[],
> > applicationVersion=None,
> > applicationOutputs=[OutputDataObjectType(type=None, name='dateout',
> > value='5')], applicationDeploymentId=None, advancedOutputDataHandling=None,
> > creationTime=None, dataTransferDetailsList=[],
> > taskStatus=TaskStatus(timeOfStateChange=1422041295304, executionState=12),
> > advancedInputDataHandling=None,
> > taskID='IDontNeedaNode_865b9f5d-d0cd-45e4-846d-fceced124bd1',
> > jobDetailsList=[],
> > taskScheduling=ComputationalResourceScheduling(computationalProjectAccount='test',
> > totalPhysicalMemory=1,
> > resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc',
> > numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1,
> > totalCPUCount=1, queueName='normal'),
> > applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070')],
> > nodeInputs=[])],
> > experimentID='dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2',
> > workflowTemplateVersion=None, workflowExecutionInstanceId=None,
> > userConfigurationData=UserConfigurationData(advanceInputDataHandling=None,
> > overrideManualScheduledParams=False, throttleResources=False,
> > airavataAutoSchedule=False,
> > computationalResourceScheduling=ComputationalResourceScheduling(computationalProjectAccount='test',
> > totalPhysicalMemory=1,
> > resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc',
> > numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1,
> > totalCPUCount=1, queueName='normal'), shareExperimentPublicly=False,
> > qosParams=None, advanceOutputDataHandling=None), experimentInputs=[],
> > experimentStatus=ExperimentStatus(timeOfStateChange=1422041270879,
> > experimentState=0),
> > applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070',
> > description=None)
> > > > >
> > > > > [INFO] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 :
> > Created new experiment with experiment name dateexperiment
> > > > > [INFO] Validation of
> > org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator
> > is SUCCESSFUL
> > > > > [INFO] Validation of
> > org.apache.airavata.orchestrator.core.validator.impl.ExperimentStatusValidator
> > is SUCCESSFUL
> > > > > [ERROR] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 :
> > Couldn't identify experiment type, experiment
> > dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 is neither single
> > application nor workflow.
> > > > > [ERROR] Internal error processing launchExperiment
> > > > > org.apache.thrift.TException: Experiment
> > 'dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2' launch failed. Unable
> > to figureout execution type for application
> > test1name_77d3187b-93c6-4e97-944c-4e7792060070
> > > > > at
> > org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:209)
> > > > > at
> > org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:509)
> > > > > at
> > org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:494)
> > > > > at
> > org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > > at
> > org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > > at
> > org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > > at
> > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > > at
> > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > > at java.lang.Thread.run(Thread.java:701)
> > > > > [ERROR] Internal error processing launchExperiment
> > > > > org.apache.thrift.TApplicationException: Internal error processing
> > launchExperiment
> > > > > at
> > org.apache.thrift.TApplicationException.read(TApplicationException.java:111)
> > > > > at
> > org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:71)
> > > > > at
> > org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_launchExperiment(OrchestratorService.java:192)
> > > > > at
> > org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.launchExperiment(OrchestratorService.java:178)
> > > > > at
> > org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1119)
> > > > > at
> > org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > > > > at
> > org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > > > > at
> > org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > > at
> > org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > > at
> > org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > > at
> > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > > at
> > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > > at java.lang.Thread.run(Thread.java:701)
> > > > >
> > > > > On Fri, Jan 23, 2015 at 09:57:55AM -0500, Raminder Singh wrote:
> > > > > > Hi Kenneth,
> > > > > >
> > > > > > In case you are running jobs on local machine (localprovider) then
> > the job description is filled from Application catalog > Application
> > deployment description but incase of remote (SSH or GSISSH) its filled
> > based on Job scheduler (PBS,SLURM) parameters. You can look in the provider
> > codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please
> > share the stacktrace so i can find more details. According to my
> > understanding error should not be different for Xbaya or Python client.
> > Share more information and i will debug to provide you more information.
> > > > > >
> > > > > > Thanks
> > > > > > Raminder
> > > > > >
> > > > > > On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > I was able to launch the example experiment and get output
> > > > > > > from the Xbaya quickstart:
> > > > > > >
> > > > > > >
> > https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
> > > > > > >
> > > > > > > I am trying to create and launch my own custom experiment with
> > > > > > > the Airavata-remote python client. However, I'm getting this
> > error
> > > > > > > on the server side:
> > > > > > >
> > > > > > > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException:
> > Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
> > > > > > > INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID,
> > COMPUTE_RESOURCE_CONSUMED,
> > > > > > > CREATION_TIME, JOB_DESCRIPTION)
> > > > > > > VALUES (?, ?, ?, ?, ?)
> > > > > > > [params=(String)
> > IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String)
> > IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null,
> > (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
> > > > > > >
> > > > > > >
> > > > > > > Where does JOB_DESCRIPTION get input into the experiment?
> > > > > > >
> > > > > > > Kenneth
> > > > > > >
> > > > > > > On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
> > > > > > >>
> > > > > > >> Is there a difference in the experiments that get created
> > > > > > >> through xbaya workflow creation and through commandline
> > > > > > >> createExperiment? I can clone and run the xbaya experiment
> > > > > > >> through the Python API client, but when I try creating my own
> > > > > > >> experiment, the run fails. Perhaps someone can send out
> > > > > > >> the attributes required by createExperiment for creating a
> > runnable
> > > > > > >> experiment on localhost?
> > > > > > >>
> > > > > > >> Kenneth
> > > > > > >>
> > > > > > >> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
> > > > > > >>>
> > > > > > >>> Marlon,
> > > > > > >>>
> > > > > > >>> I'm finding all the structures I'm trying to use. Do the other
> > > > > > >>> thrift files get pulled in with the include lines?
> > > > > > >>>
> > > > > > >>> I got to the point of trying to launch an experiment but ran
> > into
> > > > > > >>> an error. Maybe I'm missing a field in my experiment? Does
> > anyone
> > > > > > >>> have a blow-by-blow set of steps for creating a project,
> > creating
> > > > > > >>> an experiment, launching the experiment?
> > > > > > >>>
> > > > > > >>> ./Airavata-remote -h localhost:8930 getAllUserExperiments
> > kenneth1
> > > > > > >>> [ Experiment(userName='kenneth1', experimentOutputs=[],
> > errors=None, applicationVersion=None, name='dateexperiment',
> > workflowTemplateId=None,
> > projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea',
> > stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906,
> > workflowNodeState=7)], creationTime=1420844856258,
> > workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826',
> > errors=[], nodeName='IDontNeedaNode', nodeOutputs=[],
> > executionUnitData=None,
> > workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906,
> > workflowNodeState=7), creationTime=1420844997871, executionUnit=1,
> > taskDetailsList=[TaskDetails(applicationInputs=[], errors=[],
> > applicationVersion=None, applicationOutputs=[],
> > applicationDeploymentId=None, advancedOutputDataHandling=None,
> > creationTime=None, dataTransferDetailsList=[],
> > taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12),
> > advancedInputDataHandling=None,
> > taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675',
> > jobDetailsList=[], taskScheduling=None,
> > applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')],
> > nodeInputs=[])],
> > experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0',
> > workflowTemplateVersion=None, workflowExecutionInstanceId=None,
> > userConfigurationData=None, experimentInputs=[],
> > experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279,
> > experimentState=0),
> > applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee',
> > description=None)]
> > > > > > >>>
> > > > > > >>> ./Airavata-remote -h localhost:8930 launchExperiment
> > dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> > > > > > >>> Traceback (most recent call last):
> > > > > > >>> File "./Airavata-remote", line 301, in <module>
> > > > > > >>> pp.pprint(client.launchExperiment(args[0],args[1],))
> > > > > > >>> File
> > "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py",
> > line 2572, in launchExperiment
> > > > > > >>> self.recv_launchExperiment()
> > > > > > >>> File
> > "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py",
> > line 2589, in recv_launchExperiment
> > > > > > >>> raise x
> > > > > > >>> thrift.Thrift.TApplicationException: Internal error processing
> > launchExperiment
> > > > > > >>>
> > > > > > >>>
> > > > > > >>> From the server console:
> > > > > > >>>
> > > > > > >>> [ERROR] Error occurred during processing of message.
> > > > > > >>> java.lang.NullPointerException
> > > > > > >>> at
> > org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> > > > > > >>> at
> > org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> > > > > > >>> at
> > org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> > > > > > >>> at
> > org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> > > > > > >>> at
> > org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> > > > > > >>> at
> > org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > > > >>> at
> > org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > > > >>> at
> > org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > > > >>> at
> > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > > > >>> at
> > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > > > >>> at java.lang.Thread.run(Thread.java:701)
> > > > > > >>> [ERROR] Internal error processing launchExperiment
> > > > > > >>> org.apache.thrift.transport.TTransportException
> > > > > > >>> at
> > org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> > > > > > >>> at
> > org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> > > > > > >>> at
> > org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> > > > > > >>> at
> > org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> > > > > > >>> at
> > org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> > > > > > >>> at
> > org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> > > > > > >>> at
> > org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> > > > > > >>> at
> > org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> > > > > > >>> at
> > org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> > > > > > >>> at
> > org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > > > > > >>> at
> > org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > > > > > >>> at
> > org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > > > >>> at
> > org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > > > >>> at
> > org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > > > >>> at
> > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > > > >>> at
> > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > > > >>> at java.lang.Thread.run(Thread.java:701)
> > > > > > >>>
> > > > > > >>>
> > > > > > >>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> > > > > > >>>> Hi Kenneth--
> > > > > > >>>>
> > > > > > >>>> You'll probably run into problems with the python bindings,
> > but it is an
> > > > > > >>>> easy fix (I think). The thrift files need to specify the
> > language
> > > > > > >>>> bindings you want. Only three of the thrift files have python
> > bindings
> > > > > > >>>> set up.
> > > > > > >>>>
> > > > > > >>>> Marlon
> > > > > > >>>>
> > > > > > >>>>
> > > > > > >>>> thrift-interface-descriptions mpierce$ find . -type f -exec
> > grep -il
> > > > > > >>>> "namespace py" {} \;
> > > > > > >>>> ./airavataAPI.thrift
> > > > > > >>>> ./airavataErrors.thrift
> > > > > > >>>> ./workflowAPI.thrift
> > > > > > >>>>
> > > > > > >>>>
> > > > > > >>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> > > > > > >>>>> Okay, looks like the C in Compute needs to be capitalized.
> > > > > > >>>>> I must have typoed that.
> > > > > > >>>>>
> > > > > > >>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> > > > > > >>>>>> Marlon,
> > > > > > >>>>>>
> > > > > > >>>>>> I can do the startup with ./airavata-server.sh for now.
> > > > > > >>>>>>
> > > > > > >>>>>> I'm trying to go through the steps of creating my own app
> > and
> > > > > > >>>>>> launching it using the Python client. I ran into a problem
> > with
> > > > > > >>>>>> a method not found in the client:
> > > > > > >>>>>>
> > > > > > >>>>>> In
> > > > > > >>>>>>
> > airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> > > > > > >>>>>>
> > > > > > >>>>>> ./Airavata-remote -h localhost:8930
> > getAllcomputeResourceNames
> > > > > > >>>>>> Unrecognized method getAllcomputeResourceNames
> > > > > > >>>>>>
> > > > > > >>>>>> Should the python client be up-to-date?
> > > > > > >>>>>>
> > > > > > >>>>>> Kenneth
> > > > > > >>>>>>
> > > > > > >>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce
> > wrote:
> > > > > > >>>>>>> Hi Ken--
> > > > > > >>>>>>>
> > > > > > >>>>>>> Thanks--feel free to fix the startup script and submit a
> > patch.
> > > > > > >>>>>>>
> > > > > > >>>>>>> Marlon
> > > > > > >>>>>>>
> > > > > > >>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
> > > > > > >>>>>>>> I grabbed the source release from
> > > > > > >>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > > > > >>>>>>>>
> > > > > > >>>>>>>> and built that. The server startup script is still
> > broken for
> > > > > > >>>>>>>> Ubuntu when run as the quick start describes (sh
> > airavata-server.sh),
> > > > > > >>>>>>>> but works when invoked as ./airavata-server.sh.
> > > > > > >>>>>>>>
> > > > > > >>>>>>>> Registering sample apps and xbaya workflow construction
> > work.
> > > > > > >>>>>>>> Not sure when the xbaya workflow construction would be
> > useful?
> > > > > > >>>>>>>> Running the workflow generates output in /tmp.
> > > > > > >>>>>>>>
> > > > > > >>>>>>>> I would like to try creating new experiments and running
> > them.
> > > > > > >>>>>>>> I will be playing with the python client. Are all the
> > samples in
> > > > > > >>>>>>>>
> > airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> > > > > > >>>>>>>>
> > > > > > >>>>>>>> up-to-date? I'll probably go by them to try registering
> > new experiments
> > > > > > >>>>>>>> and running them with the python client, unless anyone
> > has documentation
> > > > > > >>>>>>>> handy.
> > > > > > >>>>>>>>
> > > > > > >>>>>>>> Kenneth
> > > > > > >>>>>>>>
> > > > > > >>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce
> > wrote:
> > > > > > >>>>>>>>> We also run the server components (not XBaya) full time
> > and run daily
> > > > > > >>>>>>>>> tests against it as part of test-drive.airavata.org.
> > > > > > >>>>>>>>>
> > > > > > >>>>>>>>> Marlon
> > > > > > >>>>>>>>>
> > > > > > >>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
> > > > > > >>>>>>>>>> Was it stable enough to use outside the demo? Any
> > problems to note?
> > > > > > >>>>>>>>>>
> > > > > > >>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru
> > wrote:
> > > > > > >>>>>>>>>>> + 1 for the release.
> > > > > > >>>>>>>>>>>
> > > > > > >>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple
> > of participants
> > > > > > >>>>>>>>>>> followed along successfully.
> > > > > > >>>>>>>>>>>
> > > > > > >>>>>>>>>>>
> > > > > > >>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> > > > > > >>>>>>>>>>> <ka...@gmail.com>
> > > > > > >>>>>>>>>>> wrote:
> > > > > > >>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on
> > the following
> > > > > > >>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Detailed change log/release notes:
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> All Release Artifacts:
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> PGP release keys (signed using 65541DBC):
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/release/airavata/KEYS
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Specific URL's:
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> GIT source tag:
> > > > > > >>>>>>>>>>>>
> > https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Source release:
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Binary Artifacts:
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Airavata Server:
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> API Server
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> GFac Server
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Orchestrator Server
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Xbaya Distribution
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Client SDKs
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > > > > > >>>>>>>>>>>>
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Maven staging repo:
> > > > > > >>>>>>>>>>>>
> > https://repository.apache.org/content/repositories/orgapacheairavata-1005
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> Please verify the artifacts and vote. The vote will
> > be open for
> > > > > > >>>>>>>>>>>> atleast
> > > > > > >>>>>>>>>>>> 72 hours.
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> [ ] +1 approve
> > > > > > >>>>>>>>>>>> [ ] +0 no opinion
> > > > > > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>> [ ] +1 approve
> > > > > > >>>>>>>>>>>> [ ] +0 no opinion
> > > > > > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > > > > > >>>>>>>>>>>>
> > > > > >
> >
Re: job description in experiment creation?
Posted by Chathuri Wimalasena <ka...@gmail.com>.
Hi Kenneth,
If it is an argument that you need to be added to the pbs script, you need
to set it as an "application argument". Value field is to set the actual
value of the input which should be set at the time of experiment creation
unless it is a default value.
Thanks..
Chathuri
On Mon, Jan 26, 2015 at 1:39 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> I've been able to create and launch an experiment with the
> python API client. The application does not see the argument
> I'm trying to pass in. I'm trying to set this with the
> registerApplicationInterface function. Maybe my problem
> is the InputDataObjectType? Should I be using 'value' or
> 'applicationArgument' or something else?
>
> On Fri, Jan 23, 2015 at 04:28:33PM -0800, K Yoshimoto wrote:
> >
> > Looks like the experiment did run, though. Output was in
> > the stdout file, rather than in the output dir...
> >
> > On Fri, Jan 23, 2015 at 04:14:05PM -0800, K Yoshimoto wrote:
> > >
> > > I added input and output to my appinterface. Now, I'm seeing something
> > > on server side like this:
> > >
> > > [ERROR] could not parse XML document prolog; nested exception is:
> > > only whitespace content allowed before start tag and not {
> (position: START_DOCUMENT seen {... @1:1)
> > > could not parse XML document prolog; nested exception is:
> > > org.xmlpull.v1.XmlPullParserException: only whitespace content allowed
> before start tag and not { (position: START_DOCUMENT seen {... @1:1)
> > > at org.xmlpull.mxp1.MXParser.parseProlog(MXParser.java:1519)
> > > at org.xmlpull.mxp1.MXParser.nextImpl(MXParser.java:1395)
> > > at org.xmlpull.mxp1.MXParser.next(MXParser.java:1093)
> > >
> > >
> > >
> > > On Fri, Jan 23, 2015 at 11:36:31AM -0800, K Yoshimoto wrote:
> > > >
> > > > Here's the experiment and stack trace from server. It can't figure
> > > > out experiment type?
> > > >
> > > >
> > > > Experiment(userName='kenneth1',
> experimentOutputs=[OutputDataObjectType(type=None, name='dateout',
> value='5')], errors=None, applicationVersion=None, name='dateexperiment',
> workflowTemplateId=None,
> projectID='test1_057dc666-f81b-4ee2-ac26-db159341b4e7',
> stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1422041295249,
> workflowNodeState=7)], creationTime=1422041270814,
> workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_2cf34fd2-180b-4c17-bcd5-1127503cc308',
> errors=[], nodeName='IDontNeedaNode', nodeOutputs=[],
> executionUnitData=None,
> workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1422041295249,
> workflowNodeState=7), creationTime=1422041295222, executionUnit=1,
> taskDetailsList=[TaskDetails(applicationInputs=[], errors=[],
> applicationVersion=None,
> applicationOutputs=[OutputDataObjectType(type=None, name='dateout',
> value='5')], applicationDeploymentId=None, advancedOutputDataHandling=None,
> creationTime=None, dataTransferDetailsList=[],
> taskStatus=TaskStatus(timeOfStateChange=1422041295304, executionState=12),
> advancedInputDataHandling=None,
> taskID='IDontNeedaNode_865b9f5d-d0cd-45e4-846d-fceced124bd1',
> jobDetailsList=[],
> taskScheduling=ComputationalResourceScheduling(computationalProjectAccount='test',
> totalPhysicalMemory=1,
> resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc',
> numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1,
> totalCPUCount=1, queueName='normal'),
> applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070')],
> nodeInputs=[])],
> experimentID='dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2',
> workflowTemplateVersion=None, workflowExecutionInstanceId=None,
> userConfigurationData=UserConfigurationData(advanceInputDataHandling=None,
> overrideManualScheduledParams=False, throttleResources=False,
> airavataAutoSchedule=False,
> computationalResourceScheduling=ComputationalResourceScheduling(computationalProjectAccount='test',
> totalPhysicalMemory=1,
> resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc',
> numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1,
> totalCPUCount=1, queueName='normal'), shareExperimentPublicly=False,
> qosParams=None, advanceOutputDataHandling=None), experimentInputs=[],
> experimentStatus=ExperimentStatus(timeOfStateChange=1422041270879,
> experimentState=0),
> applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070',
> description=None)
> > > >
> > > > [INFO] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 :
> Created new experiment with experiment name dateexperiment
> > > > [INFO] Validation of
> org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator
> is SUCCESSFUL
> > > > [INFO] Validation of
> org.apache.airavata.orchestrator.core.validator.impl.ExperimentStatusValidator
> is SUCCESSFUL
> > > > [ERROR] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 :
> Couldn't identify experiment type, experiment
> dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 is neither single
> application nor workflow.
> > > > [ERROR] Internal error processing launchExperiment
> > > > org.apache.thrift.TException: Experiment
> 'dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2' launch failed. Unable
> to figureout execution type for application
> test1name_77d3187b-93c6-4e97-944c-4e7792060070
> > > > at
> org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:209)
> > > > at
> org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:509)
> > > > at
> org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:494)
> > > > at
> org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > at
> org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > at
> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > at java.lang.Thread.run(Thread.java:701)
> > > > [ERROR] Internal error processing launchExperiment
> > > > org.apache.thrift.TApplicationException: Internal error processing
> launchExperiment
> > > > at
> org.apache.thrift.TApplicationException.read(TApplicationException.java:111)
> > > > at
> org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:71)
> > > > at
> org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_launchExperiment(OrchestratorService.java:192)
> > > > at
> org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.launchExperiment(OrchestratorService.java:178)
> > > > at
> org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1119)
> > > > at
> org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > > > at
> org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > > > at
> org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > at
> org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > at
> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > at java.lang.Thread.run(Thread.java:701)
> > > >
> > > > On Fri, Jan 23, 2015 at 09:57:55AM -0500, Raminder Singh wrote:
> > > > > Hi Kenneth,
> > > > >
> > > > > In case you are running jobs on local machine (localprovider) then
> the job description is filled from Application catalog > Application
> deployment description but incase of remote (SSH or GSISSH) its filled
> based on Job scheduler (PBS,SLURM) parameters. You can look in the provider
> codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please
> share the stacktrace so i can find more details. According to my
> understanding error should not be different for Xbaya or Python client.
> Share more information and i will debug to provide you more information.
> > > > >
> > > > > Thanks
> > > > > Raminder
> > > > >
> > > > > On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> > > > >
> > > > > >
> > > > > > I was able to launch the example experiment and get output
> > > > > > from the Xbaya quickstart:
> > > > > >
> > > > > >
> https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
> > > > > >
> > > > > > I am trying to create and launch my own custom experiment with
> > > > > > the Airavata-remote python client. However, I'm getting this
> error
> > > > > > on the server side:
> > > > > >
> > > > > > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException:
> Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
> > > > > > INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID,
> COMPUTE_RESOURCE_CONSUMED,
> > > > > > CREATION_TIME, JOB_DESCRIPTION)
> > > > > > VALUES (?, ?, ?, ?, ?)
> > > > > > [params=(String)
> IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String)
> IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null,
> (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
> > > > > >
> > > > > >
> > > > > > Where does JOB_DESCRIPTION get input into the experiment?
> > > > > >
> > > > > > Kenneth
> > > > > >
> > > > > > On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
> > > > > >>
> > > > > >> Is there a difference in the experiments that get created
> > > > > >> through xbaya workflow creation and through commandline
> > > > > >> createExperiment? I can clone and run the xbaya experiment
> > > > > >> through the Python API client, but when I try creating my own
> > > > > >> experiment, the run fails. Perhaps someone can send out
> > > > > >> the attributes required by createExperiment for creating a
> runnable
> > > > > >> experiment on localhost?
> > > > > >>
> > > > > >> Kenneth
> > > > > >>
> > > > > >> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
> > > > > >>>
> > > > > >>> Marlon,
> > > > > >>>
> > > > > >>> I'm finding all the structures I'm trying to use. Do the other
> > > > > >>> thrift files get pulled in with the include lines?
> > > > > >>>
> > > > > >>> I got to the point of trying to launch an experiment but ran
> into
> > > > > >>> an error. Maybe I'm missing a field in my experiment? Does
> anyone
> > > > > >>> have a blow-by-blow set of steps for creating a project,
> creating
> > > > > >>> an experiment, launching the experiment?
> > > > > >>>
> > > > > >>> ./Airavata-remote -h localhost:8930 getAllUserExperiments
> kenneth1
> > > > > >>> [ Experiment(userName='kenneth1', experimentOutputs=[],
> errors=None, applicationVersion=None, name='dateexperiment',
> workflowTemplateId=None,
> projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea',
> stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906,
> workflowNodeState=7)], creationTime=1420844856258,
> workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826',
> errors=[], nodeName='IDontNeedaNode', nodeOutputs=[],
> executionUnitData=None,
> workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906,
> workflowNodeState=7), creationTime=1420844997871, executionUnit=1,
> taskDetailsList=[TaskDetails(applicationInputs=[], errors=[],
> applicationVersion=None, applicationOutputs=[],
> applicationDeploymentId=None, advancedOutputDataHandling=None,
> creationTime=None, dataTransferDetailsList=[],
> taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12),
> advancedInputDataHandling=None,
> taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675',
> jobDetailsList=[], taskScheduling=None,
> applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')],
> nodeInputs=[])],
> experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0',
> workflowTemplateVersion=None, workflowExecutionInstanceId=None,
> userConfigurationData=None, experimentInputs=[],
> experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279,
> experimentState=0),
> applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee',
> description=None)]
> > > > > >>>
> > > > > >>> ./Airavata-remote -h localhost:8930 launchExperiment
> dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> > > > > >>> Traceback (most recent call last):
> > > > > >>> File "./Airavata-remote", line 301, in <module>
> > > > > >>> pp.pprint(client.launchExperiment(args[0],args[1],))
> > > > > >>> File
> "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py",
> line 2572, in launchExperiment
> > > > > >>> self.recv_launchExperiment()
> > > > > >>> File
> "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py",
> line 2589, in recv_launchExperiment
> > > > > >>> raise x
> > > > > >>> thrift.Thrift.TApplicationException: Internal error processing
> launchExperiment
> > > > > >>>
> > > > > >>>
> > > > > >>> From the server console:
> > > > > >>>
> > > > > >>> [ERROR] Error occurred during processing of message.
> > > > > >>> java.lang.NullPointerException
> > > > > >>> at
> org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> > > > > >>> at
> org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> > > > > >>> at
> org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> > > > > >>> at
> org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> > > > > >>> at
> org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> > > > > >>> at
> org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > > >>> at
> org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > > >>> at
> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > > >>> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > > >>> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > > >>> at java.lang.Thread.run(Thread.java:701)
> > > > > >>> [ERROR] Internal error processing launchExperiment
> > > > > >>> org.apache.thrift.transport.TTransportException
> > > > > >>> at
> org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> > > > > >>> at
> org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> > > > > >>> at
> org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> > > > > >>> at
> org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> > > > > >>> at
> org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> > > > > >>> at
> org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> > > > > >>> at
> org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> > > > > >>> at
> org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> > > > > >>> at
> org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> > > > > >>> at
> org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > > > > >>> at
> org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > > > > >>> at
> org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > > >>> at
> org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > > >>> at
> org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > > >>> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > > >>> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > > >>> at java.lang.Thread.run(Thread.java:701)
> > > > > >>>
> > > > > >>>
> > > > > >>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> > > > > >>>> Hi Kenneth--
> > > > > >>>>
> > > > > >>>> You'll probably run into problems with the python bindings,
> but it is an
> > > > > >>>> easy fix (I think). The thrift files need to specify the
> language
> > > > > >>>> bindings you want. Only three of the thrift files have python
> bindings
> > > > > >>>> set up.
> > > > > >>>>
> > > > > >>>> Marlon
> > > > > >>>>
> > > > > >>>>
> > > > > >>>> thrift-interface-descriptions mpierce$ find . -type f -exec
> grep -il
> > > > > >>>> "namespace py" {} \;
> > > > > >>>> ./airavataAPI.thrift
> > > > > >>>> ./airavataErrors.thrift
> > > > > >>>> ./workflowAPI.thrift
> > > > > >>>>
> > > > > >>>>
> > > > > >>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> > > > > >>>>> Okay, looks like the C in Compute needs to be capitalized.
> > > > > >>>>> I must have typoed that.
> > > > > >>>>>
> > > > > >>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> > > > > >>>>>> Marlon,
> > > > > >>>>>>
> > > > > >>>>>> I can do the startup with ./airavata-server.sh for now.
> > > > > >>>>>>
> > > > > >>>>>> I'm trying to go through the steps of creating my own app
> and
> > > > > >>>>>> launching it using the Python client. I ran into a problem
> with
> > > > > >>>>>> a method not found in the client:
> > > > > >>>>>>
> > > > > >>>>>> In
> > > > > >>>>>>
> airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> > > > > >>>>>>
> > > > > >>>>>> ./Airavata-remote -h localhost:8930
> getAllcomputeResourceNames
> > > > > >>>>>> Unrecognized method getAllcomputeResourceNames
> > > > > >>>>>>
> > > > > >>>>>> Should the python client be up-to-date?
> > > > > >>>>>>
> > > > > >>>>>> Kenneth
> > > > > >>>>>>
> > > > > >>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce
> wrote:
> > > > > >>>>>>> Hi Ken--
> > > > > >>>>>>>
> > > > > >>>>>>> Thanks--feel free to fix the startup script and submit a
> patch.
> > > > > >>>>>>>
> > > > > >>>>>>> Marlon
> > > > > >>>>>>>
> > > > > >>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
> > > > > >>>>>>>> I grabbed the source release from
> > > > > >>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > > > >>>>>>>>
> > > > > >>>>>>>> and built that. The server startup script is still
> broken for
> > > > > >>>>>>>> Ubuntu when run as the quick start describes (sh
> airavata-server.sh),
> > > > > >>>>>>>> but works when invoked as ./airavata-server.sh.
> > > > > >>>>>>>>
> > > > > >>>>>>>> Registering sample apps and xbaya workflow construction
> work.
> > > > > >>>>>>>> Not sure when the xbaya workflow construction would be
> useful?
> > > > > >>>>>>>> Running the workflow generates output in /tmp.
> > > > > >>>>>>>>
> > > > > >>>>>>>> I would like to try creating new experiments and running
> them.
> > > > > >>>>>>>> I will be playing with the python client. Are all the
> samples in
> > > > > >>>>>>>>
> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> > > > > >>>>>>>>
> > > > > >>>>>>>> up-to-date? I'll probably go by them to try registering
> new experiments
> > > > > >>>>>>>> and running them with the python client, unless anyone
> has documentation
> > > > > >>>>>>>> handy.
> > > > > >>>>>>>>
> > > > > >>>>>>>> Kenneth
> > > > > >>>>>>>>
> > > > > >>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce
> wrote:
> > > > > >>>>>>>>> We also run the server components (not XBaya) full time
> and run daily
> > > > > >>>>>>>>> tests against it as part of test-drive.airavata.org.
> > > > > >>>>>>>>>
> > > > > >>>>>>>>> Marlon
> > > > > >>>>>>>>>
> > > > > >>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
> > > > > >>>>>>>>>> Was it stable enough to use outside the demo? Any
> problems to note?
> > > > > >>>>>>>>>>
> > > > > >>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru
> wrote:
> > > > > >>>>>>>>>>> + 1 for the release.
> > > > > >>>>>>>>>>>
> > > > > >>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple
> of participants
> > > > > >>>>>>>>>>> followed along successfully.
> > > > > >>>>>>>>>>>
> > > > > >>>>>>>>>>>
> > > > > >>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> > > > > >>>>>>>>>>> <ka...@gmail.com>
> > > > > >>>>>>>>>>> wrote:
> > > > > >>>>>>>>>>>
> > > > > >>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on
> the following
> > > > > >>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Detailed change log/release notes:
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> All Release Artifacts:
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> PGP release keys (signed using 65541DBC):
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/release/airavata/KEYS
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Specific URL's:
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> GIT source tag:
> > > > > >>>>>>>>>>>>
> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Source release:
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Binary Artifacts:
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Airavata Server:
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> API Server
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> GFac Server
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Orchestrator Server
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Xbaya Distribution
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Client SDKs
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > > > > >>>>>>>>>>>>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Maven staging repo:
> > > > > >>>>>>>>>>>>
> https://repository.apache.org/content/repositories/orgapacheairavata-1005
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> Please verify the artifacts and vote. The vote will
> be open for
> > > > > >>>>>>>>>>>> atleast
> > > > > >>>>>>>>>>>> 72 hours.
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> [ ] +1 approve
> > > > > >>>>>>>>>>>> [ ] +0 no opinion
> > > > > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>> [ ] +1 approve
> > > > > >>>>>>>>>>>> [ ] +0 no opinion
> > > > > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> > > > > >>>>>>>>>>>>
> > > > >
>
Re: job description in experiment creation?
Posted by K Yoshimoto <ke...@sdsc.edu>.
I've been able to create and launch an experiment with the
python API client. The application does not see the argument
I'm trying to pass in. I'm trying to set this with the
registerApplicationInterface function. Maybe my problem
is the InputDataObjectType? Should I be using 'value' or
'applicationArgument' or something else?
On Fri, Jan 23, 2015 at 04:28:33PM -0800, K Yoshimoto wrote:
>
> Looks like the experiment did run, though. Output was in
> the stdout file, rather than in the output dir...
>
> On Fri, Jan 23, 2015 at 04:14:05PM -0800, K Yoshimoto wrote:
> >
> > I added input and output to my appinterface. Now, I'm seeing something
> > on server side like this:
> >
> > [ERROR] could not parse XML document prolog; nested exception is:
> > only whitespace content allowed before start tag and not { (position: START_DOCUMENT seen {... @1:1)
> > could not parse XML document prolog; nested exception is:
> > org.xmlpull.v1.XmlPullParserException: only whitespace content allowed before start tag and not { (position: START_DOCUMENT seen {... @1:1)
> > at org.xmlpull.mxp1.MXParser.parseProlog(MXParser.java:1519)
> > at org.xmlpull.mxp1.MXParser.nextImpl(MXParser.java:1395)
> > at org.xmlpull.mxp1.MXParser.next(MXParser.java:1093)
> >
> >
> >
> > On Fri, Jan 23, 2015 at 11:36:31AM -0800, K Yoshimoto wrote:
> > >
> > > Here's the experiment and stack trace from server. It can't figure
> > > out experiment type?
> > >
> > >
> > > Experiment(userName='kenneth1', experimentOutputs=[OutputDataObjectType(type=None, name='dateout', value='5')], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_057dc666-f81b-4ee2-ac26-db159341b4e7', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1422041295249, workflowNodeState=7)], creationTime=1422041270814, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_2cf34fd2-180b-4c17-bcd5-1127503cc308', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1422041295249, workflowNodeState=7), creationTime=1422041295222, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[OutputDataObjectType(type=None, name='dateout', value='5')], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1422041295304, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_865b9f5d-d0cd-45e4-846d-fceced124bd1', jobDetailsList=[], taskScheduling=ComputationalResourceScheduling(computationalProjectAccount='test', totalPhysicalMemory=1, resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc', numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1, totalCPUCount=1, queueName='normal'), applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070')], nodeInputs=[])], experimentID='dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=UserConfigurationData(advanceInputDataHandling=None, overrideManualScheduledParams=False, throttleResources=False, airavataAutoSchedule=False, computationalResourceScheduling=ComputationalResourceScheduling(computationalProjectAccount='test', totalPhysicalMemory=1, resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc', numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1, totalCPUCount=1, queueName='normal'), shareExperimentPublicly=False, qosParams=None, advanceOutputDataHandling=None), experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1422041270879, experimentState=0), applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070', description=None)
> > >
> > > [INFO] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 : Created new experiment with experiment name dateexperiment
> > > [INFO] Validation of org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator is SUCCESSFUL
> > > [INFO] Validation of org.apache.airavata.orchestrator.core.validator.impl.ExperimentStatusValidator is SUCCESSFUL
> > > [ERROR] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 : Couldn't identify experiment type, experiment dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 is neither single application nor workflow.
> > > [ERROR] Internal error processing launchExperiment
> > > org.apache.thrift.TException: Experiment 'dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2' launch failed. Unable to figureout execution type for application test1name_77d3187b-93c6-4e97-944c-4e7792060070
> > > at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:209)
> > > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:509)
> > > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:494)
> > > at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > at java.lang.Thread.run(Thread.java:701)
> > > [ERROR] Internal error processing launchExperiment
> > > org.apache.thrift.TApplicationException: Internal error processing launchExperiment
> > > at org.apache.thrift.TApplicationException.read(TApplicationException.java:111)
> > > at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:71)
> > > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_launchExperiment(OrchestratorService.java:192)
> > > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.launchExperiment(OrchestratorService.java:178)
> > > at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1119)
> > > at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > > at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > > at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > at java.lang.Thread.run(Thread.java:701)
> > >
> > > On Fri, Jan 23, 2015 at 09:57:55AM -0500, Raminder Singh wrote:
> > > > Hi Kenneth,
> > > >
> > > > In case you are running jobs on local machine (localprovider) then the job description is filled from Application catalog > Application deployment description but incase of remote (SSH or GSISSH) its filled based on Job scheduler (PBS,SLURM) parameters. You can look in the provider codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please share the stacktrace so i can find more details. According to my understanding error should not be different for Xbaya or Python client. Share more information and i will debug to provide you more information.
> > > >
> > > > Thanks
> > > > Raminder
> > > >
> > > > On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> > > >
> > > > >
> > > > > I was able to launch the example experiment and get output
> > > > > from the Xbaya quickstart:
> > > > >
> > > > > https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
> > > > >
> > > > > I am trying to create and launch my own custom experiment with
> > > > > the Airavata-remote python client. However, I'm getting this error
> > > > > on the server side:
> > > > >
> > > > > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
> > > > > INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID, COMPUTE_RESOURCE_CONSUMED,
> > > > > CREATION_TIME, JOB_DESCRIPTION)
> > > > > VALUES (?, ?, ?, ?, ?)
> > > > > [params=(String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null, (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
> > > > >
> > > > >
> > > > > Where does JOB_DESCRIPTION get input into the experiment?
> > > > >
> > > > > Kenneth
> > > > >
> > > > > On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
> > > > >>
> > > > >> Is there a difference in the experiments that get created
> > > > >> through xbaya workflow creation and through commandline
> > > > >> createExperiment? I can clone and run the xbaya experiment
> > > > >> through the Python API client, but when I try creating my own
> > > > >> experiment, the run fails. Perhaps someone can send out
> > > > >> the attributes required by createExperiment for creating a runnable
> > > > >> experiment on localhost?
> > > > >>
> > > > >> Kenneth
> > > > >>
> > > > >> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
> > > > >>>
> > > > >>> Marlon,
> > > > >>>
> > > > >>> I'm finding all the structures I'm trying to use. Do the other
> > > > >>> thrift files get pulled in with the include lines?
> > > > >>>
> > > > >>> I got to the point of trying to launch an experiment but ran into
> > > > >>> an error. Maybe I'm missing a field in my experiment? Does anyone
> > > > >>> have a blow-by-blow set of steps for creating a project, creating
> > > > >>> an experiment, launching the experiment?
> > > > >>>
> > > > >>> ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
> > > > >>> [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
> > > > >>>
> > > > >>> ./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> > > > >>> Traceback (most recent call last):
> > > > >>> File "./Airavata-remote", line 301, in <module>
> > > > >>> pp.pprint(client.launchExperiment(args[0],args[1],))
> > > > >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
> > > > >>> self.recv_launchExperiment()
> > > > >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
> > > > >>> raise x
> > > > >>> thrift.Thrift.TApplicationException: Internal error processing launchExperiment
> > > > >>>
> > > > >>>
> > > > >>> From the server console:
> > > > >>>
> > > > >>> [ERROR] Error occurred during processing of message.
> > > > >>> java.lang.NullPointerException
> > > > >>> at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> > > > >>> at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> > > > >>> at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> > > > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> > > > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> > > > >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > >>> at java.lang.Thread.run(Thread.java:701)
> > > > >>> [ERROR] Internal error processing launchExperiment
> > > > >>> org.apache.thrift.transport.TTransportException
> > > > >>> at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> > > > >>> at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> > > > >>> at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> > > > >>> at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> > > > >>> at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> > > > >>> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> > > > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> > > > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> > > > >>> at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> > > > >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > > > >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > > > >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > > >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > > >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > > >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > > >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > > >>> at java.lang.Thread.run(Thread.java:701)
> > > > >>>
> > > > >>>
> > > > >>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> > > > >>>> Hi Kenneth--
> > > > >>>>
> > > > >>>> You'll probably run into problems with the python bindings, but it is an
> > > > >>>> easy fix (I think). The thrift files need to specify the language
> > > > >>>> bindings you want. Only three of the thrift files have python bindings
> > > > >>>> set up.
> > > > >>>>
> > > > >>>> Marlon
> > > > >>>>
> > > > >>>>
> > > > >>>> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> > > > >>>> "namespace py" {} \;
> > > > >>>> ./airavataAPI.thrift
> > > > >>>> ./airavataErrors.thrift
> > > > >>>> ./workflowAPI.thrift
> > > > >>>>
> > > > >>>>
> > > > >>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> > > > >>>>> Okay, looks like the C in Compute needs to be capitalized.
> > > > >>>>> I must have typoed that.
> > > > >>>>>
> > > > >>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> > > > >>>>>> Marlon,
> > > > >>>>>>
> > > > >>>>>> I can do the startup with ./airavata-server.sh for now.
> > > > >>>>>>
> > > > >>>>>> I'm trying to go through the steps of creating my own app and
> > > > >>>>>> launching it using the Python client. I ran into a problem with
> > > > >>>>>> a method not found in the client:
> > > > >>>>>>
> > > > >>>>>> In
> > > > >>>>>> airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> > > > >>>>>>
> > > > >>>>>> ./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> > > > >>>>>> Unrecognized method getAllcomputeResourceNames
> > > > >>>>>>
> > > > >>>>>> Should the python client be up-to-date?
> > > > >>>>>>
> > > > >>>>>> Kenneth
> > > > >>>>>>
> > > > >>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> > > > >>>>>>> Hi Ken--
> > > > >>>>>>>
> > > > >>>>>>> Thanks--feel free to fix the startup script and submit a patch.
> > > > >>>>>>>
> > > > >>>>>>> Marlon
> > > > >>>>>>>
> > > > >>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
> > > > >>>>>>>> I grabbed the source release from
> > > > >>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > > >>>>>>>>
> > > > >>>>>>>> and built that. The server startup script is still broken for
> > > > >>>>>>>> Ubuntu when run as the quick start describes (sh airavata-server.sh),
> > > > >>>>>>>> but works when invoked as ./airavata-server.sh.
> > > > >>>>>>>>
> > > > >>>>>>>> Registering sample apps and xbaya workflow construction work.
> > > > >>>>>>>> Not sure when the xbaya workflow construction would be useful?
> > > > >>>>>>>> Running the workflow generates output in /tmp.
> > > > >>>>>>>>
> > > > >>>>>>>> I would like to try creating new experiments and running them.
> > > > >>>>>>>> I will be playing with the python client. Are all the samples in
> > > > >>>>>>>> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> > > > >>>>>>>>
> > > > >>>>>>>> up-to-date? I'll probably go by them to try registering new experiments
> > > > >>>>>>>> and running them with the python client, unless anyone has documentation
> > > > >>>>>>>> handy.
> > > > >>>>>>>>
> > > > >>>>>>>> Kenneth
> > > > >>>>>>>>
> > > > >>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> > > > >>>>>>>>> We also run the server components (not XBaya) full time and run daily
> > > > >>>>>>>>> tests against it as part of test-drive.airavata.org.
> > > > >>>>>>>>>
> > > > >>>>>>>>> Marlon
> > > > >>>>>>>>>
> > > > >>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
> > > > >>>>>>>>>> Was it stable enough to use outside the demo? Any problems to note?
> > > > >>>>>>>>>>
> > > > >>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> > > > >>>>>>>>>>> + 1 for the release.
> > > > >>>>>>>>>>>
> > > > >>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple of participants
> > > > >>>>>>>>>>> followed along successfully.
> > > > >>>>>>>>>>>
> > > > >>>>>>>>>>>
> > > > >>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> > > > >>>>>>>>>>> <ka...@gmail.com>
> > > > >>>>>>>>>>> wrote:
> > > > >>>>>>>>>>>
> > > > >>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on the following
> > > > >>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Detailed change log/release notes:
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> All Release Artifacts:
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> PGP release keys (signed using 65541DBC):
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Specific URL's:
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> GIT source tag:
> > > > >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Source release:
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Binary Artifacts:
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Airavata Server:
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> API Server
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> GFac Server
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Orchestrator Server
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Xbaya Distribution
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Client SDKs
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Maven staging repo:
> > > > >>>>>>>>>>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> Please verify the artifacts and vote. The vote will be open for
> > > > >>>>>>>>>>>> atleast
> > > > >>>>>>>>>>>> 72 hours.
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> [ ] +1 approve
> > > > >>>>>>>>>>>> [ ] +0 no opinion
> > > > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>> [ ] +1 approve
> > > > >>>>>>>>>>>> [ ] +0 no opinion
> > > > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>>
> > > > >>>>>>>>>>>>
> > > >
Re: job description in experiment creation?
Posted by K Yoshimoto <ke...@sdsc.edu>.
Looks like the experiment did run, though. Output was in
the stdout file, rather than in the output dir...
On Fri, Jan 23, 2015 at 04:14:05PM -0800, K Yoshimoto wrote:
>
> I added input and output to my appinterface. Now, I'm seeing something
> on server side like this:
>
> [ERROR] could not parse XML document prolog; nested exception is:
> only whitespace content allowed before start tag and not { (position: START_DOCUMENT seen {... @1:1)
> could not parse XML document prolog; nested exception is:
> org.xmlpull.v1.XmlPullParserException: only whitespace content allowed before start tag and not { (position: START_DOCUMENT seen {... @1:1)
> at org.xmlpull.mxp1.MXParser.parseProlog(MXParser.java:1519)
> at org.xmlpull.mxp1.MXParser.nextImpl(MXParser.java:1395)
> at org.xmlpull.mxp1.MXParser.next(MXParser.java:1093)
>
>
>
> On Fri, Jan 23, 2015 at 11:36:31AM -0800, K Yoshimoto wrote:
> >
> > Here's the experiment and stack trace from server. It can't figure
> > out experiment type?
> >
> >
> > Experiment(userName='kenneth1', experimentOutputs=[OutputDataObjectType(type=None, name='dateout', value='5')], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_057dc666-f81b-4ee2-ac26-db159341b4e7', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1422041295249, workflowNodeState=7)], creationTime=1422041270814, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_2cf34fd2-180b-4c17-bcd5-1127503cc308', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1422041295249, workflowNodeState=7), creationTime=1422041295222, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[OutputDataObjectType(type=None, name='dateout', value='5')], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1422041295304, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_865b9f5d-d0cd-45e4-846d-fceced124bd1', jobDetailsList=[], taskScheduling=ComputationalResourceScheduling(computationalProjectAccount='test', totalPhysicalMemory=1, resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc', numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1, totalCPUCount=1, queueName='normal'), applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070')], nodeInputs=[])], experimentID='dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=UserConfigurationData(advanceInputDataHandling=None, overrideManualScheduledParams=False, throttleResources=False, airavataAutoSchedule=False, computationalResourceScheduling=ComputationalResourceScheduling(computationalProjectAccount='test', totalPhysicalMemory=1, resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc', numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1, totalCPUCount=1, queueName='normal'), shareExperimentPublicly=False, qosParams=None, advanceOutputDataHandling=None), experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1422041270879, experimentState=0), applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070', description=None)
> >
> > [INFO] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 : Created new experiment with experiment name dateexperiment
> > [INFO] Validation of org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator is SUCCESSFUL
> > [INFO] Validation of org.apache.airavata.orchestrator.core.validator.impl.ExperimentStatusValidator is SUCCESSFUL
> > [ERROR] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 : Couldn't identify experiment type, experiment dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 is neither single application nor workflow.
> > [ERROR] Internal error processing launchExperiment
> > org.apache.thrift.TException: Experiment 'dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2' launch failed. Unable to figureout execution type for application test1name_77d3187b-93c6-4e97-944c-4e7792060070
> > at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:209)
> > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:509)
> > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:494)
> > at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > at java.lang.Thread.run(Thread.java:701)
> > [ERROR] Internal error processing launchExperiment
> > org.apache.thrift.TApplicationException: Internal error processing launchExperiment
> > at org.apache.thrift.TApplicationException.read(TApplicationException.java:111)
> > at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:71)
> > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_launchExperiment(OrchestratorService.java:192)
> > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.launchExperiment(OrchestratorService.java:178)
> > at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1119)
> > at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > at java.lang.Thread.run(Thread.java:701)
> >
> > On Fri, Jan 23, 2015 at 09:57:55AM -0500, Raminder Singh wrote:
> > > Hi Kenneth,
> > >
> > > In case you are running jobs on local machine (localprovider) then the job description is filled from Application catalog > Application deployment description but incase of remote (SSH or GSISSH) its filled based on Job scheduler (PBS,SLURM) parameters. You can look in the provider codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please share the stacktrace so i can find more details. According to my understanding error should not be different for Xbaya or Python client. Share more information and i will debug to provide you more information.
> > >
> > > Thanks
> > > Raminder
> > >
> > > On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> > >
> > > >
> > > > I was able to launch the example experiment and get output
> > > > from the Xbaya quickstart:
> > > >
> > > > https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
> > > >
> > > > I am trying to create and launch my own custom experiment with
> > > > the Airavata-remote python client. However, I'm getting this error
> > > > on the server side:
> > > >
> > > > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
> > > > INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID, COMPUTE_RESOURCE_CONSUMED,
> > > > CREATION_TIME, JOB_DESCRIPTION)
> > > > VALUES (?, ?, ?, ?, ?)
> > > > [params=(String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null, (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
> > > >
> > > >
> > > > Where does JOB_DESCRIPTION get input into the experiment?
> > > >
> > > > Kenneth
> > > >
> > > > On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
> > > >>
> > > >> Is there a difference in the experiments that get created
> > > >> through xbaya workflow creation and through commandline
> > > >> createExperiment? I can clone and run the xbaya experiment
> > > >> through the Python API client, but when I try creating my own
> > > >> experiment, the run fails. Perhaps someone can send out
> > > >> the attributes required by createExperiment for creating a runnable
> > > >> experiment on localhost?
> > > >>
> > > >> Kenneth
> > > >>
> > > >> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
> > > >>>
> > > >>> Marlon,
> > > >>>
> > > >>> I'm finding all the structures I'm trying to use. Do the other
> > > >>> thrift files get pulled in with the include lines?
> > > >>>
> > > >>> I got to the point of trying to launch an experiment but ran into
> > > >>> an error. Maybe I'm missing a field in my experiment? Does anyone
> > > >>> have a blow-by-blow set of steps for creating a project, creating
> > > >>> an experiment, launching the experiment?
> > > >>>
> > > >>> ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
> > > >>> [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
> > > >>>
> > > >>> ./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> > > >>> Traceback (most recent call last):
> > > >>> File "./Airavata-remote", line 301, in <module>
> > > >>> pp.pprint(client.launchExperiment(args[0],args[1],))
> > > >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
> > > >>> self.recv_launchExperiment()
> > > >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
> > > >>> raise x
> > > >>> thrift.Thrift.TApplicationException: Internal error processing launchExperiment
> > > >>>
> > > >>>
> > > >>> From the server console:
> > > >>>
> > > >>> [ERROR] Error occurred during processing of message.
> > > >>> java.lang.NullPointerException
> > > >>> at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> > > >>> at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> > > >>> at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> > > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> > > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> > > >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > >>> at java.lang.Thread.run(Thread.java:701)
> > > >>> [ERROR] Internal error processing launchExperiment
> > > >>> org.apache.thrift.transport.TTransportException
> > > >>> at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> > > >>> at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> > > >>> at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> > > >>> at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> > > >>> at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> > > >>> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> > > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> > > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> > > >>> at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> > > >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > > >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > > >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > > >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > > >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > > >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > > >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > > >>> at java.lang.Thread.run(Thread.java:701)
> > > >>>
> > > >>>
> > > >>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> > > >>>> Hi Kenneth--
> > > >>>>
> > > >>>> You'll probably run into problems with the python bindings, but it is an
> > > >>>> easy fix (I think). The thrift files need to specify the language
> > > >>>> bindings you want. Only three of the thrift files have python bindings
> > > >>>> set up.
> > > >>>>
> > > >>>> Marlon
> > > >>>>
> > > >>>>
> > > >>>> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> > > >>>> "namespace py" {} \;
> > > >>>> ./airavataAPI.thrift
> > > >>>> ./airavataErrors.thrift
> > > >>>> ./workflowAPI.thrift
> > > >>>>
> > > >>>>
> > > >>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> > > >>>>> Okay, looks like the C in Compute needs to be capitalized.
> > > >>>>> I must have typoed that.
> > > >>>>>
> > > >>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> > > >>>>>> Marlon,
> > > >>>>>>
> > > >>>>>> I can do the startup with ./airavata-server.sh for now.
> > > >>>>>>
> > > >>>>>> I'm trying to go through the steps of creating my own app and
> > > >>>>>> launching it using the Python client. I ran into a problem with
> > > >>>>>> a method not found in the client:
> > > >>>>>>
> > > >>>>>> In
> > > >>>>>> airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> > > >>>>>>
> > > >>>>>> ./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> > > >>>>>> Unrecognized method getAllcomputeResourceNames
> > > >>>>>>
> > > >>>>>> Should the python client be up-to-date?
> > > >>>>>>
> > > >>>>>> Kenneth
> > > >>>>>>
> > > >>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> > > >>>>>>> Hi Ken--
> > > >>>>>>>
> > > >>>>>>> Thanks--feel free to fix the startup script and submit a patch.
> > > >>>>>>>
> > > >>>>>>> Marlon
> > > >>>>>>>
> > > >>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
> > > >>>>>>>> I grabbed the source release from
> > > >>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > >>>>>>>>
> > > >>>>>>>> and built that. The server startup script is still broken for
> > > >>>>>>>> Ubuntu when run as the quick start describes (sh airavata-server.sh),
> > > >>>>>>>> but works when invoked as ./airavata-server.sh.
> > > >>>>>>>>
> > > >>>>>>>> Registering sample apps and xbaya workflow construction work.
> > > >>>>>>>> Not sure when the xbaya workflow construction would be useful?
> > > >>>>>>>> Running the workflow generates output in /tmp.
> > > >>>>>>>>
> > > >>>>>>>> I would like to try creating new experiments and running them.
> > > >>>>>>>> I will be playing with the python client. Are all the samples in
> > > >>>>>>>> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> > > >>>>>>>>
> > > >>>>>>>> up-to-date? I'll probably go by them to try registering new experiments
> > > >>>>>>>> and running them with the python client, unless anyone has documentation
> > > >>>>>>>> handy.
> > > >>>>>>>>
> > > >>>>>>>> Kenneth
> > > >>>>>>>>
> > > >>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> > > >>>>>>>>> We also run the server components (not XBaya) full time and run daily
> > > >>>>>>>>> tests against it as part of test-drive.airavata.org.
> > > >>>>>>>>>
> > > >>>>>>>>> Marlon
> > > >>>>>>>>>
> > > >>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
> > > >>>>>>>>>> Was it stable enough to use outside the demo? Any problems to note?
> > > >>>>>>>>>>
> > > >>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> > > >>>>>>>>>>> + 1 for the release.
> > > >>>>>>>>>>>
> > > >>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple of participants
> > > >>>>>>>>>>> followed along successfully.
> > > >>>>>>>>>>>
> > > >>>>>>>>>>>
> > > >>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> > > >>>>>>>>>>> <ka...@gmail.com>
> > > >>>>>>>>>>> wrote:
> > > >>>>>>>>>>>
> > > >>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on the following
> > > >>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Detailed change log/release notes:
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> All Release Artifacts:
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> PGP release keys (signed using 65541DBC):
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Specific URL's:
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> GIT source tag:
> > > >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Source release:
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Binary Artifacts:
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Airavata Server:
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> API Server
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> GFac Server
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Orchestrator Server
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Xbaya Distribution
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Client SDKs
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Maven staging repo:
> > > >>>>>>>>>>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> Please verify the artifacts and vote. The vote will be open for
> > > >>>>>>>>>>>> atleast
> > > >>>>>>>>>>>> 72 hours.
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> [ ] +1 approve
> > > >>>>>>>>>>>> [ ] +0 no opinion
> > > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>> [ ] +1 approve
> > > >>>>>>>>>>>> [ ] +0 no opinion
> > > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>>
> > > >>>>>>>>>>>>
> > >
Re: job description in experiment creation?
Posted by K Yoshimoto <ke...@sdsc.edu>.
I added input and output to my appinterface. Now, I'm seeing something
on server side like this:
[ERROR] could not parse XML document prolog; nested exception is:
only whitespace content allowed before start tag and not { (position: START_DOCUMENT seen {... @1:1)
could not parse XML document prolog; nested exception is:
org.xmlpull.v1.XmlPullParserException: only whitespace content allowed before start tag and not { (position: START_DOCUMENT seen {... @1:1)
at org.xmlpull.mxp1.MXParser.parseProlog(MXParser.java:1519)
at org.xmlpull.mxp1.MXParser.nextImpl(MXParser.java:1395)
at org.xmlpull.mxp1.MXParser.next(MXParser.java:1093)
On Fri, Jan 23, 2015 at 11:36:31AM -0800, K Yoshimoto wrote:
>
> Here's the experiment and stack trace from server. It can't figure
> out experiment type?
>
>
> Experiment(userName='kenneth1', experimentOutputs=[OutputDataObjectType(type=None, name='dateout', value='5')], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_057dc666-f81b-4ee2-ac26-db159341b4e7', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1422041295249, workflowNodeState=7)], creationTime=1422041270814, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_2cf34fd2-180b-4c17-bcd5-1127503cc308', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1422041295249, workflowNodeState=7), creationTime=1422041295222, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[OutputDataObjectType(type=None, name='dateout', value='5')], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1422041295304, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_865b9f5d-d0cd-45e4-846d-fceced124bd1', jobDetailsList=[], taskScheduling=ComputationalResourceScheduling(computationalProjectAccount='test', totalPhysicalMemory=1, resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc', numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1, totalCPUCount=1, queueName='normal'), applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070')], nodeInputs=[])], experimentID='dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=UserConfigurationData(advanceInputDataHandling=None, overrideManualScheduledParams=False, throttleResources=False, airavataAutoSchedule=False, computationalResourceScheduling=ComputationalResourceScheduling(computationalProjectAccount='test', totalPhysicalMemory=1, resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc', numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1, totalCPUCount=1, queueName='normal'), shareExperimentPublicly=False, qosParams=None, advanceOutputDataHandling=None), experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1422041270879, experimentState=0), applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070', description=None)
>
> [INFO] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 : Created new experiment with experiment name dateexperiment
> [INFO] Validation of org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator is SUCCESSFUL
> [INFO] Validation of org.apache.airavata.orchestrator.core.validator.impl.ExperimentStatusValidator is SUCCESSFUL
> [ERROR] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 : Couldn't identify experiment type, experiment dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 is neither single application nor workflow.
> [ERROR] Internal error processing launchExperiment
> org.apache.thrift.TException: Experiment 'dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2' launch failed. Unable to figureout execution type for application test1name_77d3187b-93c6-4e97-944c-4e7792060070
> at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:209)
> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:509)
> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:494)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:701)
> [ERROR] Internal error processing launchExperiment
> org.apache.thrift.TApplicationException: Internal error processing launchExperiment
> at org.apache.thrift.TApplicationException.read(TApplicationException.java:111)
> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:71)
> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_launchExperiment(OrchestratorService.java:192)
> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.launchExperiment(OrchestratorService.java:178)
> at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1119)
> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:701)
>
> On Fri, Jan 23, 2015 at 09:57:55AM -0500, Raminder Singh wrote:
> > Hi Kenneth,
> >
> > In case you are running jobs on local machine (localprovider) then the job description is filled from Application catalog > Application deployment description but incase of remote (SSH or GSISSH) its filled based on Job scheduler (PBS,SLURM) parameters. You can look in the provider codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please share the stacktrace so i can find more details. According to my understanding error should not be different for Xbaya or Python client. Share more information and i will debug to provide you more information.
> >
> > Thanks
> > Raminder
> >
> > On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
> >
> > >
> > > I was able to launch the example experiment and get output
> > > from the Xbaya quickstart:
> > >
> > > https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
> > >
> > > I am trying to create and launch my own custom experiment with
> > > the Airavata-remote python client. However, I'm getting this error
> > > on the server side:
> > >
> > > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
> > > INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID, COMPUTE_RESOURCE_CONSUMED,
> > > CREATION_TIME, JOB_DESCRIPTION)
> > > VALUES (?, ?, ?, ?, ?)
> > > [params=(String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null, (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
> > >
> > >
> > > Where does JOB_DESCRIPTION get input into the experiment?
> > >
> > > Kenneth
> > >
> > > On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
> > >>
> > >> Is there a difference in the experiments that get created
> > >> through xbaya workflow creation and through commandline
> > >> createExperiment? I can clone and run the xbaya experiment
> > >> through the Python API client, but when I try creating my own
> > >> experiment, the run fails. Perhaps someone can send out
> > >> the attributes required by createExperiment for creating a runnable
> > >> experiment on localhost?
> > >>
> > >> Kenneth
> > >>
> > >> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
> > >>>
> > >>> Marlon,
> > >>>
> > >>> I'm finding all the structures I'm trying to use. Do the other
> > >>> thrift files get pulled in with the include lines?
> > >>>
> > >>> I got to the point of trying to launch an experiment but ran into
> > >>> an error. Maybe I'm missing a field in my experiment? Does anyone
> > >>> have a blow-by-blow set of steps for creating a project, creating
> > >>> an experiment, launching the experiment?
> > >>>
> > >>> ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
> > >>> [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
> > >>>
> > >>> ./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> > >>> Traceback (most recent call last):
> > >>> File "./Airavata-remote", line 301, in <module>
> > >>> pp.pprint(client.launchExperiment(args[0],args[1],))
> > >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
> > >>> self.recv_launchExperiment()
> > >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
> > >>> raise x
> > >>> thrift.Thrift.TApplicationException: Internal error processing launchExperiment
> > >>>
> > >>>
> > >>> From the server console:
> > >>>
> > >>> [ERROR] Error occurred during processing of message.
> > >>> java.lang.NullPointerException
> > >>> at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> > >>> at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> > >>> at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> > >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > >>> at java.lang.Thread.run(Thread.java:701)
> > >>> [ERROR] Internal error processing launchExperiment
> > >>> org.apache.thrift.transport.TTransportException
> > >>> at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> > >>> at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> > >>> at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> > >>> at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> > >>> at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> > >>> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> > >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> > >>> at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> > >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > >>> at java.lang.Thread.run(Thread.java:701)
> > >>>
> > >>>
> > >>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> > >>>> Hi Kenneth--
> > >>>>
> > >>>> You'll probably run into problems with the python bindings, but it is an
> > >>>> easy fix (I think). The thrift files need to specify the language
> > >>>> bindings you want. Only three of the thrift files have python bindings
> > >>>> set up.
> > >>>>
> > >>>> Marlon
> > >>>>
> > >>>>
> > >>>> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> > >>>> "namespace py" {} \;
> > >>>> ./airavataAPI.thrift
> > >>>> ./airavataErrors.thrift
> > >>>> ./workflowAPI.thrift
> > >>>>
> > >>>>
> > >>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> > >>>>> Okay, looks like the C in Compute needs to be capitalized.
> > >>>>> I must have typoed that.
> > >>>>>
> > >>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> > >>>>>> Marlon,
> > >>>>>>
> > >>>>>> I can do the startup with ./airavata-server.sh for now.
> > >>>>>>
> > >>>>>> I'm trying to go through the steps of creating my own app and
> > >>>>>> launching it using the Python client. I ran into a problem with
> > >>>>>> a method not found in the client:
> > >>>>>>
> > >>>>>> In
> > >>>>>> airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> > >>>>>>
> > >>>>>> ./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> > >>>>>> Unrecognized method getAllcomputeResourceNames
> > >>>>>>
> > >>>>>> Should the python client be up-to-date?
> > >>>>>>
> > >>>>>> Kenneth
> > >>>>>>
> > >>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> > >>>>>>> Hi Ken--
> > >>>>>>>
> > >>>>>>> Thanks--feel free to fix the startup script and submit a patch.
> > >>>>>>>
> > >>>>>>> Marlon
> > >>>>>>>
> > >>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
> > >>>>>>>> I grabbed the source release from
> > >>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > >>>>>>>>
> > >>>>>>>> and built that. The server startup script is still broken for
> > >>>>>>>> Ubuntu when run as the quick start describes (sh airavata-server.sh),
> > >>>>>>>> but works when invoked as ./airavata-server.sh.
> > >>>>>>>>
> > >>>>>>>> Registering sample apps and xbaya workflow construction work.
> > >>>>>>>> Not sure when the xbaya workflow construction would be useful?
> > >>>>>>>> Running the workflow generates output in /tmp.
> > >>>>>>>>
> > >>>>>>>> I would like to try creating new experiments and running them.
> > >>>>>>>> I will be playing with the python client. Are all the samples in
> > >>>>>>>> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> > >>>>>>>>
> > >>>>>>>> up-to-date? I'll probably go by them to try registering new experiments
> > >>>>>>>> and running them with the python client, unless anyone has documentation
> > >>>>>>>> handy.
> > >>>>>>>>
> > >>>>>>>> Kenneth
> > >>>>>>>>
> > >>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> > >>>>>>>>> We also run the server components (not XBaya) full time and run daily
> > >>>>>>>>> tests against it as part of test-drive.airavata.org.
> > >>>>>>>>>
> > >>>>>>>>> Marlon
> > >>>>>>>>>
> > >>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
> > >>>>>>>>>> Was it stable enough to use outside the demo? Any problems to note?
> > >>>>>>>>>>
> > >>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> > >>>>>>>>>>> + 1 for the release.
> > >>>>>>>>>>>
> > >>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple of participants
> > >>>>>>>>>>> followed along successfully.
> > >>>>>>>>>>>
> > >>>>>>>>>>>
> > >>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> > >>>>>>>>>>> <ka...@gmail.com>
> > >>>>>>>>>>> wrote:
> > >>>>>>>>>>>
> > >>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on the following
> > >>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Detailed change log/release notes:
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> > >>>>>>>>>>>>
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> All Release Artifacts:
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > >>>>>>>>>>>>
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> PGP release keys (signed using 65541DBC):
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
> > >>>>>>>>>>>>
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Specific URL's:
> > >>>>>>>>>>>>
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> GIT source tag:
> > >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Source release:
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Binary Artifacts:
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Airavata Server:
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> API Server
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> GFac Server
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Orchestrator Server
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Xbaya Distribution
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Client SDKs
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Maven staging repo:
> > >>>>>>>>>>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> Please verify the artifacts and vote. The vote will be open for
> > >>>>>>>>>>>> atleast
> > >>>>>>>>>>>> 72 hours.
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> [ ] +1 approve
> > >>>>>>>>>>>> [ ] +0 no opinion
> > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > >>>>>>>>>>>>
> > >>>>>>>>>>>>
> > >>>>>>>>>>>> [ ] +1 approve
> > >>>>>>>>>>>> [ ] +0 no opinion
> > >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> > >>>>>>>>>>>>
> > >>>>>>>>>>>>
> > >>>>>>>>>>>>
> > >>>>>>>>>>>>
> >
Re: job description in experiment creation?
Posted by K Yoshimoto <ke...@sdsc.edu>.
Here's the experiment and stack trace from server. It can't figure
out experiment type?
Experiment(userName='kenneth1', experimentOutputs=[OutputDataObjectType(type=None, name='dateout', value='5')], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_057dc666-f81b-4ee2-ac26-db159341b4e7', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1422041295249, workflowNodeState=7)], creationTime=1422041270814, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_2cf34fd2-180b-4c17-bcd5-1127503cc308', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1422041295249, workflowNodeState=7), creationTime=1422041295222, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[OutputDataObjectType(type=None, name='dateout', value='5')], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1422041295304, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_865b9f5d-d0cd-45e4-846d-fceced124bd1', jobDetailsList=[], taskScheduling=ComputationalResourceScheduling(computationalProjectAccount='test', totalPhysicalMemory=1, resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc', numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1, totalCPUCount=1, queueName='normal'), applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070')], nodeInputs=[])], experimentID='dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=UserConfigurationData(advanceInputDataHandling=None, overrideManualScheduledParams=False, throttleResources=False, airavataAutoSchedule=False, computationalResourceScheduling=ComputationalResourceScheduling(computationalProjectAccount='test', totalPhysicalMemory=1, resourceHostId='localhost_6908ec7d-cf13-4feb-b414-9c03448afacc', numberOfThreads=1, wallTimeLimit=1, jobStartTime=407095870, nodeCount=1, totalCPUCount=1, queueName='normal'), shareExperimentPublicly=False, qosParams=None, advanceOutputDataHandling=None), experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1422041270879, experimentState=0), applicationId='test1name_77d3187b-93c6-4e97-944c-4e7792060070', description=None)
[INFO] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 : Created new experiment with experiment name dateexperiment
[INFO] Validation of org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator is SUCCESSFUL
[INFO] Validation of org.apache.airavata.orchestrator.core.validator.impl.ExperimentStatusValidator is SUCCESSFUL
[ERROR] Id:dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 : Couldn't identify experiment type, experiment dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2 is neither single application nor workflow.
[ERROR] Internal error processing launchExperiment
org.apache.thrift.TException: Experiment 'dateexperiment_b70a9f18-f1b9-451d-a960-337b34ba5ab2' launch failed. Unable to figureout execution type for application test1name_77d3187b-93c6-4e97-944c-4e7792060070
at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.launchExperiment(OrchestratorServerHandler.java:209)
at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:509)
at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$launchExperiment.getResult(OrchestratorService.java:494)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:701)
[ERROR] Internal error processing launchExperiment
org.apache.thrift.TApplicationException: Internal error processing launchExperiment
at org.apache.thrift.TApplicationException.read(TApplicationException.java:111)
at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:71)
at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_launchExperiment(OrchestratorService.java:192)
at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.launchExperiment(OrchestratorService.java:178)
at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1119)
at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:701)
On Fri, Jan 23, 2015 at 09:57:55AM -0500, Raminder Singh wrote:
> Hi Kenneth,
>
> In case you are running jobs on local machine (localprovider) then the job description is filled from Application catalog > Application deployment description but incase of remote (SSH or GSISSH) its filled based on Job scheduler (PBS,SLURM) parameters. You can look in the provider codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please share the stacktrace so i can find more details. According to my understanding error should not be different for Xbaya or Python client. Share more information and i will debug to provide you more information.
>
> Thanks
> Raminder
>
> On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> >
> > I was able to launch the example experiment and get output
> > from the Xbaya quickstart:
> >
> > https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
> >
> > I am trying to create and launch my own custom experiment with
> > the Airavata-remote python client. However, I'm getting this error
> > on the server side:
> >
> > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
> > INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID, COMPUTE_RESOURCE_CONSUMED,
> > CREATION_TIME, JOB_DESCRIPTION)
> > VALUES (?, ?, ?, ?, ?)
> > [params=(String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null, (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
> >
> >
> > Where does JOB_DESCRIPTION get input into the experiment?
> >
> > Kenneth
> >
> > On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
> >>
> >> Is there a difference in the experiments that get created
> >> through xbaya workflow creation and through commandline
> >> createExperiment? I can clone and run the xbaya experiment
> >> through the Python API client, but when I try creating my own
> >> experiment, the run fails. Perhaps someone can send out
> >> the attributes required by createExperiment for creating a runnable
> >> experiment on localhost?
> >>
> >> Kenneth
> >>
> >> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
> >>>
> >>> Marlon,
> >>>
> >>> I'm finding all the structures I'm trying to use. Do the other
> >>> thrift files get pulled in with the include lines?
> >>>
> >>> I got to the point of trying to launch an experiment but ran into
> >>> an error. Maybe I'm missing a field in my experiment? Does anyone
> >>> have a blow-by-blow set of steps for creating a project, creating
> >>> an experiment, launching the experiment?
> >>>
> >>> ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
> >>> [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
> >>>
> >>> ./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> >>> Traceback (most recent call last):
> >>> File "./Airavata-remote", line 301, in <module>
> >>> pp.pprint(client.launchExperiment(args[0],args[1],))
> >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
> >>> self.recv_launchExperiment()
> >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
> >>> raise x
> >>> thrift.Thrift.TApplicationException: Internal error processing launchExperiment
> >>>
> >>>
> >>> From the server console:
> >>>
> >>> [ERROR] Error occurred during processing of message.
> >>> java.lang.NullPointerException
> >>> at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> >>> at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> >>> at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> >>> at java.lang.Thread.run(Thread.java:701)
> >>> [ERROR] Internal error processing launchExperiment
> >>> org.apache.thrift.transport.TTransportException
> >>> at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> >>> at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> >>> at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> >>> at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> >>> at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> >>> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> >>> at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> >>> at java.lang.Thread.run(Thread.java:701)
> >>>
> >>>
> >>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> >>>> Hi Kenneth--
> >>>>
> >>>> You'll probably run into problems with the python bindings, but it is an
> >>>> easy fix (I think). The thrift files need to specify the language
> >>>> bindings you want. Only three of the thrift files have python bindings
> >>>> set up.
> >>>>
> >>>> Marlon
> >>>>
> >>>>
> >>>> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> >>>> "namespace py" {} \;
> >>>> ./airavataAPI.thrift
> >>>> ./airavataErrors.thrift
> >>>> ./workflowAPI.thrift
> >>>>
> >>>>
> >>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> >>>>> Okay, looks like the C in Compute needs to be capitalized.
> >>>>> I must have typoed that.
> >>>>>
> >>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> >>>>>> Marlon,
> >>>>>>
> >>>>>> I can do the startup with ./airavata-server.sh for now.
> >>>>>>
> >>>>>> I'm trying to go through the steps of creating my own app and
> >>>>>> launching it using the Python client. I ran into a problem with
> >>>>>> a method not found in the client:
> >>>>>>
> >>>>>> In
> >>>>>> airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> >>>>>>
> >>>>>> ./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> >>>>>> Unrecognized method getAllcomputeResourceNames
> >>>>>>
> >>>>>> Should the python client be up-to-date?
> >>>>>>
> >>>>>> Kenneth
> >>>>>>
> >>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> >>>>>>> Hi Ken--
> >>>>>>>
> >>>>>>> Thanks--feel free to fix the startup script and submit a patch.
> >>>>>>>
> >>>>>>> Marlon
> >>>>>>>
> >>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
> >>>>>>>> I grabbed the source release from
> >>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>>>>>
> >>>>>>>> and built that. The server startup script is still broken for
> >>>>>>>> Ubuntu when run as the quick start describes (sh airavata-server.sh),
> >>>>>>>> but works when invoked as ./airavata-server.sh.
> >>>>>>>>
> >>>>>>>> Registering sample apps and xbaya workflow construction work.
> >>>>>>>> Not sure when the xbaya workflow construction would be useful?
> >>>>>>>> Running the workflow generates output in /tmp.
> >>>>>>>>
> >>>>>>>> I would like to try creating new experiments and running them.
> >>>>>>>> I will be playing with the python client. Are all the samples in
> >>>>>>>> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> >>>>>>>>
> >>>>>>>> up-to-date? I'll probably go by them to try registering new experiments
> >>>>>>>> and running them with the python client, unless anyone has documentation
> >>>>>>>> handy.
> >>>>>>>>
> >>>>>>>> Kenneth
> >>>>>>>>
> >>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> >>>>>>>>> We also run the server components (not XBaya) full time and run daily
> >>>>>>>>> tests against it as part of test-drive.airavata.org.
> >>>>>>>>>
> >>>>>>>>> Marlon
> >>>>>>>>>
> >>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
> >>>>>>>>>> Was it stable enough to use outside the demo? Any problems to note?
> >>>>>>>>>>
> >>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> >>>>>>>>>>> + 1 for the release.
> >>>>>>>>>>>
> >>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple of participants
> >>>>>>>>>>> followed along successfully.
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> >>>>>>>>>>> <ka...@gmail.com>
> >>>>>>>>>>> wrote:
> >>>>>>>>>>>
> >>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on the following
> >>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
> >>>>>>>>>>>>
> >>>>>>>>>>>> Detailed change log/release notes:
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> All Release Artifacts:
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> PGP release keys (signed using 65541DBC):
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> Specific URL's:
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> GIT source tag:
> >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >>>>>>>>>>>>
> >>>>>>>>>>>> Source release:
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Binary Artifacts:
> >>>>>>>>>>>>
> >>>>>>>>>>>> Airavata Server:
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >>>>>>>>>>>>
> >>>>>>>>>>>> API Server
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> GFac Server
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Orchestrator Server
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Xbaya Distribution
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Client SDKs
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Maven staging repo:
> >>>>>>>>>>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >>>>>>>>>>>>
> >>>>>>>>>>>> Please verify the artifacts and vote. The vote will be open for
> >>>>>>>>>>>> atleast
> >>>>>>>>>>>> 72 hours.
> >>>>>>>>>>>>
> >>>>>>>>>>>> [ ] +1 approve
> >>>>>>>>>>>> [ ] +0 no opinion
> >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> [ ] +1 approve
> >>>>>>>>>>>> [ ] +0 no opinion
> >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>>
>
Re: job description in experiment creation?
Posted by K Yoshimoto <ke...@sdsc.edu>.
Thanks for the info. I'm trying the local jobs right now.
I'll verify/add app deployment description and see if that works.
I'll send the stack trace, if it still fails.
Kenneth
On Fri, Jan 23, 2015 at 09:57:55AM -0500, Raminder Singh wrote:
> Hi Kenneth,
>
> In case you are running jobs on local machine (localprovider) then the job description is filled from Application catalog > Application deployment description but incase of remote (SSH or GSISSH) its filled based on Job scheduler (PBS,SLURM) parameters. You can look in the provider codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please share the stacktrace so i can find more details. According to my understanding error should not be different for Xbaya or Python client. Share more information and i will debug to provide you more information.
>
> Thanks
> Raminder
>
> On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> >
> > I was able to launch the example experiment and get output
> > from the Xbaya quickstart:
> >
> > https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
> >
> > I am trying to create and launch my own custom experiment with
> > the Airavata-remote python client. However, I'm getting this error
> > on the server side:
> >
> > Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
> > INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID, COMPUTE_RESOURCE_CONSUMED,
> > CREATION_TIME, JOB_DESCRIPTION)
> > VALUES (?, ?, ?, ?, ?)
> > [params=(String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null, (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
> >
> >
> > Where does JOB_DESCRIPTION get input into the experiment?
> >
> > Kenneth
> >
> > On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
> >>
> >> Is there a difference in the experiments that get created
> >> through xbaya workflow creation and through commandline
> >> createExperiment? I can clone and run the xbaya experiment
> >> through the Python API client, but when I try creating my own
> >> experiment, the run fails. Perhaps someone can send out
> >> the attributes required by createExperiment for creating a runnable
> >> experiment on localhost?
> >>
> >> Kenneth
> >>
> >> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
> >>>
> >>> Marlon,
> >>>
> >>> I'm finding all the structures I'm trying to use. Do the other
> >>> thrift files get pulled in with the include lines?
> >>>
> >>> I got to the point of trying to launch an experiment but ran into
> >>> an error. Maybe I'm missing a field in my experiment? Does anyone
> >>> have a blow-by-blow set of steps for creating a project, creating
> >>> an experiment, launching the experiment?
> >>>
> >>> ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
> >>> [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
> >>>
> >>> ./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> >>> Traceback (most recent call last):
> >>> File "./Airavata-remote", line 301, in <module>
> >>> pp.pprint(client.launchExperiment(args[0],args[1],))
> >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
> >>> self.recv_launchExperiment()
> >>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
> >>> raise x
> >>> thrift.Thrift.TApplicationException: Internal error processing launchExperiment
> >>>
> >>>
> >>> From the server console:
> >>>
> >>> [ERROR] Error occurred during processing of message.
> >>> java.lang.NullPointerException
> >>> at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> >>> at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> >>> at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> >>> at java.lang.Thread.run(Thread.java:701)
> >>> [ERROR] Internal error processing launchExperiment
> >>> org.apache.thrift.transport.TTransportException
> >>> at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> >>> at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> >>> at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> >>> at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> >>> at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> >>> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> >>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> >>> at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> >>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> >>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> >>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> >>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> >>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> >>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> >>> at java.lang.Thread.run(Thread.java:701)
> >>>
> >>>
> >>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> >>>> Hi Kenneth--
> >>>>
> >>>> You'll probably run into problems with the python bindings, but it is an
> >>>> easy fix (I think). The thrift files need to specify the language
> >>>> bindings you want. Only three of the thrift files have python bindings
> >>>> set up.
> >>>>
> >>>> Marlon
> >>>>
> >>>>
> >>>> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> >>>> "namespace py" {} \;
> >>>> ./airavataAPI.thrift
> >>>> ./airavataErrors.thrift
> >>>> ./workflowAPI.thrift
> >>>>
> >>>>
> >>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> >>>>> Okay, looks like the C in Compute needs to be capitalized.
> >>>>> I must have typoed that.
> >>>>>
> >>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> >>>>>> Marlon,
> >>>>>>
> >>>>>> I can do the startup with ./airavata-server.sh for now.
> >>>>>>
> >>>>>> I'm trying to go through the steps of creating my own app and
> >>>>>> launching it using the Python client. I ran into a problem with
> >>>>>> a method not found in the client:
> >>>>>>
> >>>>>> In
> >>>>>> airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> >>>>>>
> >>>>>> ./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> >>>>>> Unrecognized method getAllcomputeResourceNames
> >>>>>>
> >>>>>> Should the python client be up-to-date?
> >>>>>>
> >>>>>> Kenneth
> >>>>>>
> >>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> >>>>>>> Hi Ken--
> >>>>>>>
> >>>>>>> Thanks--feel free to fix the startup script and submit a patch.
> >>>>>>>
> >>>>>>> Marlon
> >>>>>>>
> >>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
> >>>>>>>> I grabbed the source release from
> >>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>>>>>
> >>>>>>>> and built that. The server startup script is still broken for
> >>>>>>>> Ubuntu when run as the quick start describes (sh airavata-server.sh),
> >>>>>>>> but works when invoked as ./airavata-server.sh.
> >>>>>>>>
> >>>>>>>> Registering sample apps and xbaya workflow construction work.
> >>>>>>>> Not sure when the xbaya workflow construction would be useful?
> >>>>>>>> Running the workflow generates output in /tmp.
> >>>>>>>>
> >>>>>>>> I would like to try creating new experiments and running them.
> >>>>>>>> I will be playing with the python client. Are all the samples in
> >>>>>>>> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> >>>>>>>>
> >>>>>>>> up-to-date? I'll probably go by them to try registering new experiments
> >>>>>>>> and running them with the python client, unless anyone has documentation
> >>>>>>>> handy.
> >>>>>>>>
> >>>>>>>> Kenneth
> >>>>>>>>
> >>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> >>>>>>>>> We also run the server components (not XBaya) full time and run daily
> >>>>>>>>> tests against it as part of test-drive.airavata.org.
> >>>>>>>>>
> >>>>>>>>> Marlon
> >>>>>>>>>
> >>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
> >>>>>>>>>> Was it stable enough to use outside the demo? Any problems to note?
> >>>>>>>>>>
> >>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> >>>>>>>>>>> + 1 for the release.
> >>>>>>>>>>>
> >>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple of participants
> >>>>>>>>>>> followed along successfully.
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> >>>>>>>>>>> <ka...@gmail.com>
> >>>>>>>>>>> wrote:
> >>>>>>>>>>>
> >>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on the following
> >>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
> >>>>>>>>>>>>
> >>>>>>>>>>>> Detailed change log/release notes:
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> All Release Artifacts:
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> PGP release keys (signed using 65541DBC):
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> Specific URL's:
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> GIT source tag:
> >>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >>>>>>>>>>>>
> >>>>>>>>>>>> Source release:
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Binary Artifacts:
> >>>>>>>>>>>>
> >>>>>>>>>>>> Airavata Server:
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >>>>>>>>>>>>
> >>>>>>>>>>>> API Server
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> GFac Server
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Orchestrator Server
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Xbaya Distribution
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Client SDKs
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> >>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >>>>>>>>>>>>
> >>>>>>>>>>>> Maven staging repo:
> >>>>>>>>>>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >>>>>>>>>>>>
> >>>>>>>>>>>> Please verify the artifacts and vote. The vote will be open for
> >>>>>>>>>>>> atleast
> >>>>>>>>>>>> 72 hours.
> >>>>>>>>>>>>
> >>>>>>>>>>>> [ ] +1 approve
> >>>>>>>>>>>> [ ] +0 no opinion
> >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>> [ ] +1 approve
> >>>>>>>>>>>> [ ] +0 no opinion
> >>>>>>>>>>>> [ ] -1 disapprove (and reason why)
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>>
> >>>>>>>>>>>>
>
Re: job description in experiment creation?
Posted by Raminder Singh <ra...@gmail.com>.
Hi Kenneth,
In case you are running jobs on local machine (localprovider) then the job description is filled from Application catalog > Application deployment description but incase of remote (SSH or GSISSH) its filled based on Job scheduler (PBS,SLURM) parameters. You can look in the provider codes(LocalProvider, GSISSHProvider) in GFAC for more details. Please share the stacktrace so i can find more details. According to my understanding error should not be different for Xbaya or Python client. Share more information and i will debug to provide you more information.
Thanks
Raminder
On Jan 21, 2015, at 2:06 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
> I was able to launch the example experiment and get output
> from the Xbaya quickstart:
>
> https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
>
> I am trying to create and launch my own custom experiment with
> the Airavata-remote python client. However, I'm getting this error
> on the server side:
>
> Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
> INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID, COMPUTE_RESOURCE_CONSUMED,
> CREATION_TIME, JOB_DESCRIPTION)
> VALUES (?, ?, ?, ?, ?)
> [params=(String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null, (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
>
>
> Where does JOB_DESCRIPTION get input into the experiment?
>
> Kenneth
>
> On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
>>
>> Is there a difference in the experiments that get created
>> through xbaya workflow creation and through commandline
>> createExperiment? I can clone and run the xbaya experiment
>> through the Python API client, but when I try creating my own
>> experiment, the run fails. Perhaps someone can send out
>> the attributes required by createExperiment for creating a runnable
>> experiment on localhost?
>>
>> Kenneth
>>
>> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
>>>
>>> Marlon,
>>>
>>> I'm finding all the structures I'm trying to use. Do the other
>>> thrift files get pulled in with the include lines?
>>>
>>> I got to the point of trying to launch an experiment but ran into
>>> an error. Maybe I'm missing a field in my experiment? Does anyone
>>> have a blow-by-blow set of steps for creating a project, creating
>>> an experiment, launching the experiment?
>>>
>>> ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
>>> [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
>>>
>>> ./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
>>> Traceback (most recent call last):
>>> File "./Airavata-remote", line 301, in <module>
>>> pp.pprint(client.launchExperiment(args[0],args[1],))
>>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
>>> self.recv_launchExperiment()
>>> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
>>> raise x
>>> thrift.Thrift.TApplicationException: Internal error processing launchExperiment
>>>
>>>
>>> From the server console:
>>>
>>> [ERROR] Error occurred during processing of message.
>>> java.lang.NullPointerException
>>> at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
>>> at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
>>> at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
>>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
>>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
>>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
>>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
>>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>>> at java.lang.Thread.run(Thread.java:701)
>>> [ERROR] Internal error processing launchExperiment
>>> org.apache.thrift.transport.TTransportException
>>> at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
>>> at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
>>> at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
>>> at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
>>> at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
>>> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
>>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
>>> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
>>> at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
>>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
>>> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
>>> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
>>> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
>>> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
>>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
>>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>>> at java.lang.Thread.run(Thread.java:701)
>>>
>>>
>>> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
>>>> Hi Kenneth--
>>>>
>>>> You'll probably run into problems with the python bindings, but it is an
>>>> easy fix (I think). The thrift files need to specify the language
>>>> bindings you want. Only three of the thrift files have python bindings
>>>> set up.
>>>>
>>>> Marlon
>>>>
>>>>
>>>> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
>>>> "namespace py" {} \;
>>>> ./airavataAPI.thrift
>>>> ./airavataErrors.thrift
>>>> ./workflowAPI.thrift
>>>>
>>>>
>>>> On 1/9/15 4:15 PM, K Yoshimoto wrote:
>>>>> Okay, looks like the C in Compute needs to be capitalized.
>>>>> I must have typoed that.
>>>>>
>>>>> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
>>>>>> Marlon,
>>>>>>
>>>>>> I can do the startup with ./airavata-server.sh for now.
>>>>>>
>>>>>> I'm trying to go through the steps of creating my own app and
>>>>>> launching it using the Python client. I ran into a problem with
>>>>>> a method not found in the client:
>>>>>>
>>>>>> In
>>>>>> airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
>>>>>>
>>>>>> ./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
>>>>>> Unrecognized method getAllcomputeResourceNames
>>>>>>
>>>>>> Should the python client be up-to-date?
>>>>>>
>>>>>> Kenneth
>>>>>>
>>>>>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
>>>>>>> Hi Ken--
>>>>>>>
>>>>>>> Thanks--feel free to fix the startup script and submit a patch.
>>>>>>>
>>>>>>> Marlon
>>>>>>>
>>>>>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
>>>>>>>> I grabbed the source release from
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>>>>>>>
>>>>>>>> and built that. The server startup script is still broken for
>>>>>>>> Ubuntu when run as the quick start describes (sh airavata-server.sh),
>>>>>>>> but works when invoked as ./airavata-server.sh.
>>>>>>>>
>>>>>>>> Registering sample apps and xbaya workflow construction work.
>>>>>>>> Not sure when the xbaya workflow construction would be useful?
>>>>>>>> Running the workflow generates output in /tmp.
>>>>>>>>
>>>>>>>> I would like to try creating new experiments and running them.
>>>>>>>> I will be playing with the python client. Are all the samples in
>>>>>>>> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
>>>>>>>>
>>>>>>>> up-to-date? I'll probably go by them to try registering new experiments
>>>>>>>> and running them with the python client, unless anyone has documentation
>>>>>>>> handy.
>>>>>>>>
>>>>>>>> Kenneth
>>>>>>>>
>>>>>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
>>>>>>>>> We also run the server components (not XBaya) full time and run daily
>>>>>>>>> tests against it as part of test-drive.airavata.org.
>>>>>>>>>
>>>>>>>>> Marlon
>>>>>>>>>
>>>>>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
>>>>>>>>>> Was it stable enough to use outside the demo? Any problems to note?
>>>>>>>>>>
>>>>>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
>>>>>>>>>>> + 1 for the release.
>>>>>>>>>>>
>>>>>>>>>>> P.S. I was able to demo this RC2 in a talk and couple of participants
>>>>>>>>>>> followed along successfully.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
>>>>>>>>>>> <ka...@gmail.com>
>>>>>>>>>>> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Apache Airavata PMC is pleased to call for a vote on the following
>>>>>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
>>>>>>>>>>>>
>>>>>>>>>>>> Detailed change log/release notes:
>>>>>>>>>>>>
>>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> All Release Artifacts:
>>>>>>>>>>>>
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> PGP release keys (signed using 65541DBC):
>>>>>>>>>>>>
>>>>>>>>>>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> Specific URL's:
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> GIT source tag:
>>>>>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
>>>>>>>>>>>>
>>>>>>>>>>>> Source release:
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
>>>>>>>>>>>>
>>>>>>>>>>>> Binary Artifacts:
>>>>>>>>>>>>
>>>>>>>>>>>> Airavata Server:
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
>>>>>>>>>>>>
>>>>>>>>>>>> API Server
>>>>>>>>>>>>
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>>>>>>>>>>>>
>>>>>>>>>>>> GFac Server
>>>>>>>>>>>>
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>>>>>>>>>>>>
>>>>>>>>>>>> Orchestrator Server
>>>>>>>>>>>>
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>>>>>>>>>>>>
>>>>>>>>>>>> Xbaya Distribution
>>>>>>>>>>>>
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>>>>>>>>>>>>
>>>>>>>>>>>> Client SDKs
>>>>>>>>>>>>
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>>>>>>>>>>>>
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
>>>>>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>>>>>>>>>>>>
>>>>>>>>>>>> Maven staging repo:
>>>>>>>>>>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
>>>>>>>>>>>>
>>>>>>>>>>>> Please verify the artifacts and vote. The vote will be open for
>>>>>>>>>>>> atleast
>>>>>>>>>>>> 72 hours.
>>>>>>>>>>>>
>>>>>>>>>>>> [ ] +1 approve
>>>>>>>>>>>> [ ] +0 no opinion
>>>>>>>>>>>> [ ] -1 disapprove (and reason why)
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> [ ] +1 approve
>>>>>>>>>>>> [ ] +0 no opinion
>>>>>>>>>>>> [ ] -1 disapprove (and reason why)
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
job description in experiment creation?
Posted by K Yoshimoto <ke...@sdsc.edu>.
I was able to launch the example experiment and get output
from the Xbaya quickstart:
https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
I am trying to create and launch my own custom experiment with
the Airavata-remote python client. However, I'm getting this error
on the server side:
Caused by: org.apache.openjpa.lib.jdbc.ReportingSQLException: Column 'JOB_DESCRIPTION' cannot accept a NULL value. {prepstmnt 1346602387
INSERT INTO JOB_DETAIL (JOB_ID, TASK_ID, COMPUTE_RESOURCE_CONSUMED,
CREATION_TIME, JOB_DESCRIPTION)
VALUES (?, ?, ?, ?, ?)
[params=(String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (String) IDontNeedaNode_153cb823-1b52-400f-b458-c619fd69c9a6, (null) null, (Timestamp) 2015-01-21 10:16:28.985, (null) null]} [code=-1, state=23502]
Where does JOB_DESCRIPTION get input into the experiment?
Kenneth
On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
>
> Is there a difference in the experiments that get created
> through xbaya workflow creation and through commandline
> createExperiment? I can clone and run the xbaya experiment
> through the Python API client, but when I try creating my own
> experiment, the run fails. Perhaps someone can send out
> the attributes required by createExperiment for creating a runnable
> experiment on localhost?
>
> Kenneth
>
> On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
> >
> > Marlon,
> >
> > I'm finding all the structures I'm trying to use. Do the other
> > thrift files get pulled in with the include lines?
> >
> > I got to the point of trying to launch an experiment but ran into
> > an error. Maybe I'm missing a field in my experiment? Does anyone
> > have a blow-by-blow set of steps for creating a project, creating
> > an experiment, launching the experiment?
> >
> > ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
> > [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
> >
> > ./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> > Traceback (most recent call last):
> > File "./Airavata-remote", line 301, in <module>
> > pp.pprint(client.launchExperiment(args[0],args[1],))
> > File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
> > self.recv_launchExperiment()
> > File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
> > raise x
> > thrift.Thrift.TApplicationException: Internal error processing launchExperiment
> >
> >
> > From the server console:
> >
> > [ERROR] Error occurred during processing of message.
> > java.lang.NullPointerException
> > at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> > at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> > at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> > at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > at java.lang.Thread.run(Thread.java:701)
> > [ERROR] Internal error processing launchExperiment
> > org.apache.thrift.transport.TTransportException
> > at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> > at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> > at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> > at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> > at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> > at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> > at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> > at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> > at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> > at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> > at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> > at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> > at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> > at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> > at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> > at java.lang.Thread.run(Thread.java:701)
> >
> >
> > On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> > > Hi Kenneth--
> > >
> > > You'll probably run into problems with the python bindings, but it is an
> > > easy fix (I think). The thrift files need to specify the language
> > > bindings you want. Only three of the thrift files have python bindings
> > > set up.
> > >
> > > Marlon
> > >
> > >
> > > thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> > > "namespace py" {} \;
> > > ./airavataAPI.thrift
> > > ./airavataErrors.thrift
> > > ./workflowAPI.thrift
> > >
> > >
> > > On 1/9/15 4:15 PM, K Yoshimoto wrote:
> > > >Okay, looks like the C in Compute needs to be capitalized.
> > > >I must have typoed that.
> > > >
> > > >On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> > > >>Marlon,
> > > >>
> > > >> I can do the startup with ./airavata-server.sh for now.
> > > >>
> > > >> I'm trying to go through the steps of creating my own app and
> > > >>launching it using the Python client. I ran into a problem with
> > > >>a method not found in the client:
> > > >>
> > > >>In
> > > >>airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> > > >>
> > > >>./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> > > >>Unrecognized method getAllcomputeResourceNames
> > > >>
> > > >> Should the python client be up-to-date?
> > > >>
> > > >>Kenneth
> > > >>
> > > >>On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> > > >>>Hi Ken--
> > > >>>
> > > >>>Thanks--feel free to fix the startup script and submit a patch.
> > > >>>
> > > >>>Marlon
> > > >>>
> > > >>>On 1/8/15 6:28 PM, K Yoshimoto wrote:
> > > >>>>I grabbed the source release from
> > > >>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > >>>>
> > > >>>>and built that. The server startup script is still broken for
> > > >>>>Ubuntu when run as the quick start describes (sh airavata-server.sh),
> > > >>>>but works when invoked as ./airavata-server.sh.
> > > >>>>
> > > >>>>Registering sample apps and xbaya workflow construction work.
> > > >>>>Not sure when the xbaya workflow construction would be useful?
> > > >>>>Running the workflow generates output in /tmp.
> > > >>>>
> > > >>>>I would like to try creating new experiments and running them.
> > > >>>>I will be playing with the python client. Are all the samples in
> > > >>>>airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> > > >>>>
> > > >>>>up-to-date? I'll probably go by them to try registering new experiments
> > > >>>>and running them with the python client, unless anyone has documentation
> > > >>>>handy.
> > > >>>>
> > > >>>>Kenneth
> > > >>>>
> > > >>>>On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> > > >>>>>We also run the server components (not XBaya) full time and run daily
> > > >>>>>tests against it as part of test-drive.airavata.org.
> > > >>>>>
> > > >>>>>Marlon
> > > >>>>>
> > > >>>>>On 1/7/15 12:31 PM, K Yoshimoto wrote:
> > > >>>>>>Was it stable enough to use outside the demo? Any problems to note?
> > > >>>>>>
> > > >>>>>>On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> > > >>>>>>>+ 1 for the release.
> > > >>>>>>>
> > > >>>>>>>P.S. I was able to demo this RC2 in a talk and couple of participants
> > > >>>>>>>followed along successfully.
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> > > >>>>>>><ka...@gmail.com>
> > > >>>>>>>wrote:
> > > >>>>>>>
> > > >>>>>>>>Apache Airavata PMC is pleased to call for a vote on the following
> > > >>>>>>>>Apache Airavata 0.14 release candidate artifacts:
> > > >>>>>>>>
> > > >>>>>>>>Detailed change log/release notes:
> > > >>>>>>>>
> > > >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> > > >>>>>>>>
> > > >>>>>>>>
> > > >>>>>>>>All Release Artifacts:
> > > >>>>>>>>
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > > >>>>>>>>
> > > >>>>>>>>
> > > >>>>>>>>PGP release keys (signed using 65541DBC):
> > > >>>>>>>>
> > > >>>>>>>>https://dist.apache.org/repos/dist/release/airavata/KEYS
> > > >>>>>>>>
> > > >>>>>>>>
> > > >>>>>>>>Specific URL's:
> > > >>>>>>>>
> > > >>>>>>>>
> > > >>>>>>>>GIT source tag:
> > > >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> > > >>>>>>>>
> > > >>>>>>>>Source release:
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> > > >>>>>>>>
> > > >>>>>>>>Binary Artifacts:
> > > >>>>>>>>
> > > >>>>>>>>Airavata Server:
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> > > >>>>>>>>
> > > >>>>>>>>API Server
> > > >>>>>>>>
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> > > >>>>>>>>
> > > >>>>>>>>GFac Server
> > > >>>>>>>>
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> > > >>>>>>>>
> > > >>>>>>>>Orchestrator Server
> > > >>>>>>>>
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> > > >>>>>>>>
> > > >>>>>>>>Xbaya Distribution
> > > >>>>>>>>
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> > > >>>>>>>>
> > > >>>>>>>>Client SDKs
> > > >>>>>>>>
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> > > >>>>>>>>
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> > > >>>>>>>>
> > > >>>>>>>>Maven staging repo:
> > > >>>>>>>>https://repository.apache.org/content/repositories/orgapacheairavata-1005
> > > >>>>>>>>
> > > >>>>>>>>Please verify the artifacts and vote. The vote will be open for
> > > >>>>>>>>atleast
> > > >>>>>>>>72 hours.
> > > >>>>>>>>
> > > >>>>>>>>[ ] +1 approve
> > > >>>>>>>>[ ] +0 no opinion
> > > >>>>>>>>[ ] -1 disapprove (and reason why)
> > > >>>>>>>>
> > > >>>>>>>>
> > > >>>>>>>>[ ] +1 approve
> > > >>>>>>>>[ ] +0 no opinion
> > > >>>>>>>>[ ] -1 disapprove (and reason why)
> > > >>>>>>>>
> > > >>>>>>>>
> > > >>>>>>>>
> > > >>>>>>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by K Yoshimoto <ke...@sdsc.edu>.
Is there a difference in the experiments that get created
through xbaya workflow creation and through commandline
createExperiment? I can clone and run the xbaya experiment
through the Python API client, but when I try creating my own
experiment, the run fails. Perhaps someone can send out
the attributes required by createExperiment for creating a runnable
experiment on localhost?
Kenneth
On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
>
> Marlon,
>
> I'm finding all the structures I'm trying to use. Do the other
> thrift files get pulled in with the include lines?
>
> I got to the point of trying to launch an experiment but ran into
> an error. Maybe I'm missing a field in my experiment? Does anyone
> have a blow-by-blow set of steps for creating a project, creating
> an experiment, launching the experiment?
>
> ./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
> [ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
>
> ./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
> Traceback (most recent call last):
> File "./Airavata-remote", line 301, in <module>
> pp.pprint(client.launchExperiment(args[0],args[1],))
> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
> self.recv_launchExperiment()
> File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
> raise x
> thrift.Thrift.TApplicationException: Internal error processing launchExperiment
>
>
> From the server console:
>
> [ERROR] Error occurred during processing of message.
> java.lang.NullPointerException
> at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
> at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
> at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:701)
> [ERROR] Internal error processing launchExperiment
> org.apache.thrift.transport.TTransportException
> at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
> at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
> at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
> at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
> at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
> at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
> at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
> at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
> at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
> at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
> at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
> at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:701)
>
>
> On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> > Hi Kenneth--
> >
> > You'll probably run into problems with the python bindings, but it is an
> > easy fix (I think). The thrift files need to specify the language
> > bindings you want. Only three of the thrift files have python bindings
> > set up.
> >
> > Marlon
> >
> >
> > thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> > "namespace py" {} \;
> > ./airavataAPI.thrift
> > ./airavataErrors.thrift
> > ./workflowAPI.thrift
> >
> >
> > On 1/9/15 4:15 PM, K Yoshimoto wrote:
> > >Okay, looks like the C in Compute needs to be capitalized.
> > >I must have typoed that.
> > >
> > >On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> > >>Marlon,
> > >>
> > >> I can do the startup with ./airavata-server.sh for now.
> > >>
> > >> I'm trying to go through the steps of creating my own app and
> > >>launching it using the Python client. I ran into a problem with
> > >>a method not found in the client:
> > >>
> > >>In
> > >>airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> > >>
> > >>./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> > >>Unrecognized method getAllcomputeResourceNames
> > >>
> > >> Should the python client be up-to-date?
> > >>
> > >>Kenneth
> > >>
> > >>On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> > >>>Hi Ken--
> > >>>
> > >>>Thanks--feel free to fix the startup script and submit a patch.
> > >>>
> > >>>Marlon
> > >>>
> > >>>On 1/8/15 6:28 PM, K Yoshimoto wrote:
> > >>>>I grabbed the source release from
> > >>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > >>>>
> > >>>>and built that. The server startup script is still broken for
> > >>>>Ubuntu when run as the quick start describes (sh airavata-server.sh),
> > >>>>but works when invoked as ./airavata-server.sh.
> > >>>>
> > >>>>Registering sample apps and xbaya workflow construction work.
> > >>>>Not sure when the xbaya workflow construction would be useful?
> > >>>>Running the workflow generates output in /tmp.
> > >>>>
> > >>>>I would like to try creating new experiments and running them.
> > >>>>I will be playing with the python client. Are all the samples in
> > >>>>airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> > >>>>
> > >>>>up-to-date? I'll probably go by them to try registering new experiments
> > >>>>and running them with the python client, unless anyone has documentation
> > >>>>handy.
> > >>>>
> > >>>>Kenneth
> > >>>>
> > >>>>On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> > >>>>>We also run the server components (not XBaya) full time and run daily
> > >>>>>tests against it as part of test-drive.airavata.org.
> > >>>>>
> > >>>>>Marlon
> > >>>>>
> > >>>>>On 1/7/15 12:31 PM, K Yoshimoto wrote:
> > >>>>>>Was it stable enough to use outside the demo? Any problems to note?
> > >>>>>>
> > >>>>>>On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> > >>>>>>>+ 1 for the release.
> > >>>>>>>
> > >>>>>>>P.S. I was able to demo this RC2 in a talk and couple of participants
> > >>>>>>>followed along successfully.
> > >>>>>>>
> > >>>>>>>
> > >>>>>>>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> > >>>>>>><ka...@gmail.com>
> > >>>>>>>wrote:
> > >>>>>>>
> > >>>>>>>>Apache Airavata PMC is pleased to call for a vote on the following
> > >>>>>>>>Apache Airavata 0.14 release candidate artifacts:
> > >>>>>>>>
> > >>>>>>>>Detailed change log/release notes:
> > >>>>>>>>
> > >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> > >>>>>>>>
> > >>>>>>>>
> > >>>>>>>>All Release Artifacts:
> > >>>>>>>>
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > >>>>>>>>
> > >>>>>>>>
> > >>>>>>>>PGP release keys (signed using 65541DBC):
> > >>>>>>>>
> > >>>>>>>>https://dist.apache.org/repos/dist/release/airavata/KEYS
> > >>>>>>>>
> > >>>>>>>>
> > >>>>>>>>Specific URL's:
> > >>>>>>>>
> > >>>>>>>>
> > >>>>>>>>GIT source tag:
> > >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> > >>>>>>>>
> > >>>>>>>>Source release:
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> > >>>>>>>>
> > >>>>>>>>Binary Artifacts:
> > >>>>>>>>
> > >>>>>>>>Airavata Server:
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> > >>>>>>>>
> > >>>>>>>>API Server
> > >>>>>>>>
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> > >>>>>>>>
> > >>>>>>>>GFac Server
> > >>>>>>>>
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> > >>>>>>>>
> > >>>>>>>>Orchestrator Server
> > >>>>>>>>
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> > >>>>>>>>
> > >>>>>>>>Xbaya Distribution
> > >>>>>>>>
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> > >>>>>>>>
> > >>>>>>>>Client SDKs
> > >>>>>>>>
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> > >>>>>>>>
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> > >>>>>>>>
> > >>>>>>>>Maven staging repo:
> > >>>>>>>>https://repository.apache.org/content/repositories/orgapacheairavata-1005
> > >>>>>>>>
> > >>>>>>>>Please verify the artifacts and vote. The vote will be open for
> > >>>>>>>>atleast
> > >>>>>>>>72 hours.
> > >>>>>>>>
> > >>>>>>>>[ ] +1 approve
> > >>>>>>>>[ ] +0 no opinion
> > >>>>>>>>[ ] -1 disapprove (and reason why)
> > >>>>>>>>
> > >>>>>>>>
> > >>>>>>>>[ ] +1 approve
> > >>>>>>>>[ ] +0 no opinion
> > >>>>>>>>[ ] -1 disapprove (and reason why)
> > >>>>>>>>
> > >>>>>>>>
> > >>>>>>>>
> > >>>>>>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by K Yoshimoto <ke...@sdsc.edu>.
Marlon,
I'm finding all the structures I'm trying to use. Do the other
thrift files get pulled in with the include lines?
I got to the point of trying to launch an experiment but ran into
an error. Maybe I'm missing a field in my experiment? Does anyone
have a blow-by-blow set of steps for creating a project, creating
an experiment, launching the experiment?
./Airavata-remote -h localhost:8930 getAllUserExperiments kenneth1
[ Experiment(userName='kenneth1', experimentOutputs=[], errors=None, applicationVersion=None, name='dateexperiment', workflowTemplateId=None, projectID='test1_cfe50d5c-6d70-4119-a485-f879943ecfea', stateChangeList=[WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7)], creationTime=1420844856258, workflowNodeDetailsList=[WorkflowNodeDetails(nodeInstanceId='IDontNeedaNode_ff3cbbb8-e752-4be6-916d-b3a0fc252826', errors=[], nodeName='IDontNeedaNode', nodeOutputs=[], executionUnitData=None, workflowNodeStatus=WorkflowNodeStatus(timeOfStateChange=1420844997906, workflowNodeState=7), creationTime=1420844997871, executionUnit=1, taskDetailsList=[TaskDetails(applicationInputs=[], errors=[], applicationVersion=None, applicationOutputs=[], applicationDeploymentId=None, advancedOutputDataHandling=None, creationTime=None, dataTransferDetailsList=[], taskStatus=TaskStatus(timeOfStateChange=1420844997950, executionState=12), advancedInputDataHandling=None, taskID='IDontNeedaNode_7b028bba-52b7-402a-b9d2-41b43796d675', jobDetailsList=[], taskScheduling=None, applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee')], nodeInputs=[])], experimentID='dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0', workflowTemplateVersion=None, workflowExecutionInstanceId=None, userConfigurationData=None, experimentInputs=[], experimentStatus=ExperimentStatus(timeOfStateChange=1420844856279, experimentState=0), applicationId='datetest_7292e719-beea-4872-b6a2-b6b76c28f3ee', description=None)]
./Airavata-remote -h localhost:8930 launchExperiment dateexperiment_e139d6e8-de9a-47f8-8c05-ee606f1c0ca0 runme
Traceback (most recent call last):
File "./Airavata-remote", line 301, in <module>
pp.pprint(client.launchExperiment(args[0],args[1],))
File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2572, in launchExperiment
self.recv_launchExperiment()
File "/media/scigap/scigap/0.14.RC2/airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api/Airavata.py", line 2589, in recv_launchExperiment
raise x
thrift.Thrift.TApplicationException: Internal error processing launchExperiment
From the server console:
[ERROR] Error occurred during processing of message.
java.lang.NullPointerException
at org.apache.airavata.orchestrator.core.validator.impl.SimpleAppDataValidator.validate(SimpleAppDataValidator.java:50)
at org.apache.airavata.orchestrator.cpi.impl.SimpleOrchestratorImpl.validateExperiment(SimpleOrchestratorImpl.java:120)
at org.apache.airavata.orchestrator.server.OrchestratorServerHandler.validateExperiment(OrchestratorServerHandler.java:252)
at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:552)
at org.apache.airavata.orchestrator.cpi.OrchestratorService$Processor$validateExperiment.getResult(OrchestratorService.java:536)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:701)
[ERROR] Internal error processing launchExperiment
org.apache.thrift.transport.TTransportException
at org.apache.thrift.transport.TIOStreamTransport.read(TIOStreamTransport.java:132)
at org.apache.thrift.transport.TTransport.readAll(TTransport.java:84)
at org.apache.thrift.protocol.TBinaryProtocol.readAll(TBinaryProtocol.java:362)
at org.apache.thrift.protocol.TBinaryProtocol.readI32(TBinaryProtocol.java:284)
at org.apache.thrift.protocol.TBinaryProtocol.readMessageBegin(TBinaryProtocol.java:191)
at org.apache.thrift.TServiceClient.receiveBase(TServiceClient.java:69)
at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.recv_validateExperiment(OrchestratorService.java:239)
at org.apache.airavata.orchestrator.cpi.OrchestratorService$Client.validateExperiment(OrchestratorService.java:226)
at org.apache.airavata.api.server.handler.AiravataServerHandler.launchExperiment(AiravataServerHandler.java:1118)
at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8929)
at org.apache.airavata.api.Airavata$Processor$launchExperiment.getResult(Airavata.java:8913)
at org.apache.thrift.ProcessFunction.process(ProcessFunction.java:39)
at org.apache.thrift.TBaseProcessor.process(TBaseProcessor.java:39)
at org.apache.thrift.server.TThreadPoolServer$WorkerProcess.run(TThreadPoolServer.java:225)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:701)
On Fri, Jan 09, 2015 at 04:48:09PM -0500, Marlon Pierce wrote:
> Hi Kenneth--
>
> You'll probably run into problems with the python bindings, but it is an
> easy fix (I think). The thrift files need to specify the language
> bindings you want. Only three of the thrift files have python bindings
> set up.
>
> Marlon
>
>
> thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
> "namespace py" {} \;
> ./airavataAPI.thrift
> ./airavataErrors.thrift
> ./workflowAPI.thrift
>
>
> On 1/9/15 4:15 PM, K Yoshimoto wrote:
> >Okay, looks like the C in Compute needs to be capitalized.
> >I must have typoed that.
> >
> >On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
> >>Marlon,
> >>
> >> I can do the startup with ./airavata-server.sh for now.
> >>
> >> I'm trying to go through the steps of creating my own app and
> >>launching it using the Python client. I ran into a problem with
> >>a method not found in the client:
> >>
> >>In
> >>airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
> >>
> >>./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> >>Unrecognized method getAllcomputeResourceNames
> >>
> >> Should the python client be up-to-date?
> >>
> >>Kenneth
> >>
> >>On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> >>>Hi Ken--
> >>>
> >>>Thanks--feel free to fix the startup script and submit a patch.
> >>>
> >>>Marlon
> >>>
> >>>On 1/8/15 6:28 PM, K Yoshimoto wrote:
> >>>>I grabbed the source release from
> >>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>
> >>>>and built that. The server startup script is still broken for
> >>>>Ubuntu when run as the quick start describes (sh airavata-server.sh),
> >>>>but works when invoked as ./airavata-server.sh.
> >>>>
> >>>>Registering sample apps and xbaya workflow construction work.
> >>>>Not sure when the xbaya workflow construction would be useful?
> >>>>Running the workflow generates output in /tmp.
> >>>>
> >>>>I would like to try creating new experiments and running them.
> >>>>I will be playing with the python client. Are all the samples in
> >>>>airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> >>>>
> >>>>up-to-date? I'll probably go by them to try registering new experiments
> >>>>and running them with the python client, unless anyone has documentation
> >>>>handy.
> >>>>
> >>>>Kenneth
> >>>>
> >>>>On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> >>>>>We also run the server components (not XBaya) full time and run daily
> >>>>>tests against it as part of test-drive.airavata.org.
> >>>>>
> >>>>>Marlon
> >>>>>
> >>>>>On 1/7/15 12:31 PM, K Yoshimoto wrote:
> >>>>>>Was it stable enough to use outside the demo? Any problems to note?
> >>>>>>
> >>>>>>On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> >>>>>>>+ 1 for the release.
> >>>>>>>
> >>>>>>>P.S. I was able to demo this RC2 in a talk and couple of participants
> >>>>>>>followed along successfully.
> >>>>>>>
> >>>>>>>
> >>>>>>>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena
> >>>>>>><ka...@gmail.com>
> >>>>>>>wrote:
> >>>>>>>
> >>>>>>>>Apache Airavata PMC is pleased to call for a vote on the following
> >>>>>>>>Apache Airavata 0.14 release candidate artifacts:
> >>>>>>>>
> >>>>>>>>Detailed change log/release notes:
> >>>>>>>>
> >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>All Release Artifacts:
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>PGP release keys (signed using 65541DBC):
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/release/airavata/KEYS
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>Specific URL's:
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>GIT source tag:
> >>>>>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >>>>>>>>
> >>>>>>>>Source release:
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >>>>>>>>
> >>>>>>>>Binary Artifacts:
> >>>>>>>>
> >>>>>>>>Airavata Server:
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >>>>>>>>
> >>>>>>>>API Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>GFac Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Orchestrator Server
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Xbaya Distribution
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Client SDKs
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> >>>>>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >>>>>>>>
> >>>>>>>>Maven staging repo:
> >>>>>>>>https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >>>>>>>>
> >>>>>>>>Please verify the artifacts and vote. The vote will be open for
> >>>>>>>>atleast
> >>>>>>>>72 hours.
> >>>>>>>>
> >>>>>>>>[ ] +1 approve
> >>>>>>>>[ ] +0 no opinion
> >>>>>>>>[ ] -1 disapprove (and reason why)
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>[ ] +1 approve
> >>>>>>>>[ ] +0 no opinion
> >>>>>>>>[ ] -1 disapprove (and reason why)
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Marlon Pierce <ma...@iu.edu>.
Hi Kenneth--
You'll probably run into problems with the python bindings, but it is an
easy fix (I think). The thrift files need to specify the language
bindings you want. Only three of the thrift files have python bindings
set up.
Marlon
thrift-interface-descriptions mpierce$ find . -type f -exec grep -il
"namespace py" {} \;
./airavataAPI.thrift
./airavataErrors.thrift
./workflowAPI.thrift
On 1/9/15 4:15 PM, K Yoshimoto wrote:
> Okay, looks like the C in Compute needs to be capitalized.
> I must have typoed that.
>
> On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
>> Marlon,
>>
>> I can do the startup with ./airavata-server.sh for now.
>>
>> I'm trying to go through the steps of creating my own app and
>> launching it using the Python client. I ran into a problem with
>> a method not found in the client:
>>
>> In airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
>>
>> ./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
>> Unrecognized method getAllcomputeResourceNames
>>
>> Should the python client be up-to-date?
>>
>> Kenneth
>>
>> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
>>> Hi Ken--
>>>
>>> Thanks--feel free to fix the startup script and submit a patch.
>>>
>>> Marlon
>>>
>>> On 1/8/15 6:28 PM, K Yoshimoto wrote:
>>>> I grabbed the source release from
>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>>>
>>>> and built that. The server startup script is still broken for
>>>> Ubuntu when run as the quick start describes (sh airavata-server.sh),
>>>> but works when invoked as ./airavata-server.sh.
>>>>
>>>> Registering sample apps and xbaya workflow construction work.
>>>> Not sure when the xbaya workflow construction would be useful?
>>>> Running the workflow generates output in /tmp.
>>>>
>>>> I would like to try creating new experiments and running them.
>>>> I will be playing with the python client. Are all the samples in
>>>> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
>>>>
>>>> up-to-date? I'll probably go by them to try registering new experiments
>>>> and running them with the python client, unless anyone has documentation
>>>> handy.
>>>>
>>>> Kenneth
>>>>
>>>> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
>>>>> We also run the server components (not XBaya) full time and run daily
>>>>> tests against it as part of test-drive.airavata.org.
>>>>>
>>>>> Marlon
>>>>>
>>>>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
>>>>>> Was it stable enough to use outside the demo? Any problems to note?
>>>>>>
>>>>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
>>>>>>> + 1 for the release.
>>>>>>>
>>>>>>> P.S. I was able to demo this RC2 in a talk and couple of participants
>>>>>>> followed along successfully.
>>>>>>>
>>>>>>>
>>>>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Apache Airavata PMC is pleased to call for a vote on the following
>>>>>>>> Apache Airavata 0.14 release candidate artifacts:
>>>>>>>>
>>>>>>>> Detailed change log/release notes:
>>>>>>>>
>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>>>>>>>
>>>>>>>>
>>>>>>>> All Release Artifacts:
>>>>>>>>
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>>>>>>>
>>>>>>>>
>>>>>>>> PGP release keys (signed using 65541DBC):
>>>>>>>>
>>>>>>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
>>>>>>>>
>>>>>>>>
>>>>>>>> Specific URL's:
>>>>>>>>
>>>>>>>>
>>>>>>>> GIT source tag:
>>>>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
>>>>>>>>
>>>>>>>> Source release:
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
>>>>>>>>
>>>>>>>> Binary Artifacts:
>>>>>>>>
>>>>>>>> Airavata Server:
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
>>>>>>>>
>>>>>>>> API Server
>>>>>>>>
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>>>>>>>>
>>>>>>>> GFac Server
>>>>>>>>
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>>>>>>>>
>>>>>>>> Orchestrator Server
>>>>>>>>
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>>>>>>>>
>>>>>>>> Xbaya Distribution
>>>>>>>>
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>>>>>>>>
>>>>>>>> Client SDKs
>>>>>>>>
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>>>>>>>>
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
>>>>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>>>>>>>>
>>>>>>>> Maven staging repo:
>>>>>>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
>>>>>>>>
>>>>>>>> Please verify the artifacts and vote. The vote will be open for atleast
>>>>>>>> 72 hours.
>>>>>>>>
>>>>>>>> [ ] +1 approve
>>>>>>>> [ ] +0 no opinion
>>>>>>>> [ ] -1 disapprove (and reason why)
>>>>>>>>
>>>>>>>>
>>>>>>>> [ ] +1 approve
>>>>>>>> [ ] +0 no opinion
>>>>>>>> [ ] -1 disapprove (and reason why)
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by K Yoshimoto <ke...@sdsc.edu>.
Okay, looks like the C in Compute needs to be capitalized.
I must have typoed that.
On Fri, Jan 09, 2015 at 11:46:32AM -0800, K Yoshimoto wrote:
>
> Marlon,
>
> I can do the startup with ./airavata-server.sh for now.
>
> I'm trying to go through the steps of creating my own app and
> launching it using the Python client. I ran into a problem with
> a method not found in the client:
>
> In airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
>
> ./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
> Unrecognized method getAllcomputeResourceNames
>
> Should the python client be up-to-date?
>
> Kenneth
>
> On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> > Hi Ken--
> >
> > Thanks--feel free to fix the startup script and submit a patch.
> >
> > Marlon
> >
> > On 1/8/15 6:28 PM, K Yoshimoto wrote:
> > >I grabbed the source release from
> > >https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > >
> > >and built that. The server startup script is still broken for
> > >Ubuntu when run as the quick start describes (sh airavata-server.sh),
> > >but works when invoked as ./airavata-server.sh.
> > >
> > >Registering sample apps and xbaya workflow construction work.
> > >Not sure when the xbaya workflow construction would be useful?
> > >Running the workflow generates output in /tmp.
> > >
> > >I would like to try creating new experiments and running them.
> > >I will be playing with the python client. Are all the samples in
> > >airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> > >
> > >up-to-date? I'll probably go by them to try registering new experiments
> > >and running them with the python client, unless anyone has documentation
> > >handy.
> > >
> > >Kenneth
> > >
> > >On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> > >>We also run the server components (not XBaya) full time and run daily
> > >>tests against it as part of test-drive.airavata.org.
> > >>
> > >>Marlon
> > >>
> > >>On 1/7/15 12:31 PM, K Yoshimoto wrote:
> > >>>Was it stable enough to use outside the demo? Any problems to note?
> > >>>
> > >>>On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> > >>>>+ 1 for the release.
> > >>>>
> > >>>>P.S. I was able to demo this RC2 in a talk and couple of participants
> > >>>>followed along successfully.
> > >>>>
> > >>>>
> > >>>>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com>
> > >>>>wrote:
> > >>>>
> > >>>>>Apache Airavata PMC is pleased to call for a vote on the following
> > >>>>>Apache Airavata 0.14 release candidate artifacts:
> > >>>>>
> > >>>>>Detailed change log/release notes:
> > >>>>>
> > >>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> > >>>>>
> > >>>>>
> > >>>>>All Release Artifacts:
> > >>>>>
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> > >>>>>
> > >>>>>
> > >>>>>PGP release keys (signed using 65541DBC):
> > >>>>>
> > >>>>>https://dist.apache.org/repos/dist/release/airavata/KEYS
> > >>>>>
> > >>>>>
> > >>>>>Specific URL's:
> > >>>>>
> > >>>>>
> > >>>>>GIT source tag:
> > >>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> > >>>>>
> > >>>>>Source release:
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> > >>>>>
> > >>>>>Binary Artifacts:
> > >>>>>
> > >>>>>Airavata Server:
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> > >>>>>
> > >>>>>API Server
> > >>>>>
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> > >>>>>
> > >>>>>GFac Server
> > >>>>>
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> > >>>>>
> > >>>>>Orchestrator Server
> > >>>>>
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> > >>>>>
> > >>>>>Xbaya Distribution
> > >>>>>
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> > >>>>>
> > >>>>>Client SDKs
> > >>>>>
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> > >>>>>
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> > >>>>>
> > >>>>>Maven staging repo:
> > >>>>>https://repository.apache.org/content/repositories/orgapacheairavata-1005
> > >>>>>
> > >>>>>Please verify the artifacts and vote. The vote will be open for atleast
> > >>>>>72 hours.
> > >>>>>
> > >>>>>[ ] +1 approve
> > >>>>>[ ] +0 no opinion
> > >>>>>[ ] -1 disapprove (and reason why)
> > >>>>>
> > >>>>>
> > >>>>>[ ] +1 approve
> > >>>>>[ ] +0 no opinion
> > >>>>>[ ] -1 disapprove (and reason why)
> > >>>>>
> > >>>>>
> > >>>>>
> > >>>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by K Yoshimoto <ke...@sdsc.edu>.
Marlon,
I can do the startup with ./airavata-server.sh for now.
I'm trying to go through the steps of creating my own app and
launching it using the Python client. I ran into a problem with
a method not found in the client:
In airavata-0.14/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api
./Airavata-remote -h localhost:8930 getAllcomputeResourceNames
Unrecognized method getAllcomputeResourceNames
Should the python client be up-to-date?
Kenneth
On Thu, Jan 08, 2015 at 08:08:58PM -0500, Marlon Pierce wrote:
> Hi Ken--
>
> Thanks--feel free to fix the startup script and submit a patch.
>
> Marlon
>
> On 1/8/15 6:28 PM, K Yoshimoto wrote:
> >I grabbed the source release from
> >https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >
> >and built that. The server startup script is still broken for
> >Ubuntu when run as the quick start describes (sh airavata-server.sh),
> >but works when invoked as ./airavata-server.sh.
> >
> >Registering sample apps and xbaya workflow construction work.
> >Not sure when the xbaya workflow construction would be useful?
> >Running the workflow generates output in /tmp.
> >
> >I would like to try creating new experiments and running them.
> >I will be playing with the python client. Are all the samples in
> >airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
> >
> >up-to-date? I'll probably go by them to try registering new experiments
> >and running them with the python client, unless anyone has documentation
> >handy.
> >
> >Kenneth
> >
> >On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> >>We also run the server components (not XBaya) full time and run daily
> >>tests against it as part of test-drive.airavata.org.
> >>
> >>Marlon
> >>
> >>On 1/7/15 12:31 PM, K Yoshimoto wrote:
> >>>Was it stable enough to use outside the demo? Any problems to note?
> >>>
> >>>On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> >>>>+ 1 for the release.
> >>>>
> >>>>P.S. I was able to demo this RC2 in a talk and couple of participants
> >>>>followed along successfully.
> >>>>
> >>>>
> >>>>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com>
> >>>>wrote:
> >>>>
> >>>>>Apache Airavata PMC is pleased to call for a vote on the following
> >>>>>Apache Airavata 0.14 release candidate artifacts:
> >>>>>
> >>>>>Detailed change log/release notes:
> >>>>>
> >>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >>>>>
> >>>>>
> >>>>>All Release Artifacts:
> >>>>>
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>>>
> >>>>>
> >>>>>PGP release keys (signed using 65541DBC):
> >>>>>
> >>>>>https://dist.apache.org/repos/dist/release/airavata/KEYS
> >>>>>
> >>>>>
> >>>>>Specific URL's:
> >>>>>
> >>>>>
> >>>>>GIT source tag:
> >>>>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >>>>>
> >>>>>Source release:
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >>>>>
> >>>>>Binary Artifacts:
> >>>>>
> >>>>>Airavata Server:
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >>>>>
> >>>>>API Server
> >>>>>
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >>>>>
> >>>>>GFac Server
> >>>>>
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >>>>>
> >>>>>Orchestrator Server
> >>>>>
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >>>>>
> >>>>>Xbaya Distribution
> >>>>>
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >>>>>
> >>>>>Client SDKs
> >>>>>
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >>>>>
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> >>>>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >>>>>
> >>>>>Maven staging repo:
> >>>>>https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >>>>>
> >>>>>Please verify the artifacts and vote. The vote will be open for atleast
> >>>>>72 hours.
> >>>>>
> >>>>>[ ] +1 approve
> >>>>>[ ] +0 no opinion
> >>>>>[ ] -1 disapprove (and reason why)
> >>>>>
> >>>>>
> >>>>>[ ] +1 approve
> >>>>>[ ] +0 no opinion
> >>>>>[ ] -1 disapprove (and reason why)
> >>>>>
> >>>>>
> >>>>>
> >>>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Marlon Pierce <ma...@iu.edu>.
Hi Ken--
Thanks--feel free to fix the startup script and submit a patch.
Marlon
On 1/8/15 6:28 PM, K Yoshimoto wrote:
> I grabbed the source release from
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>
> and built that. The server startup script is still broken for
> Ubuntu when run as the quick start describes (sh airavata-server.sh),
> but works when invoked as ./airavata-server.sh.
>
> Registering sample apps and xbaya workflow construction work.
> Not sure when the xbaya workflow construction would be useful?
> Running the workflow generates output in /tmp.
>
> I would like to try creating new experiments and running them.
> I will be playing with the python client. Are all the samples in
> airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
>
> up-to-date? I'll probably go by them to try registering new experiments
> and running them with the python client, unless anyone has documentation handy.
>
> Kenneth
>
> On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
>> We also run the server components (not XBaya) full time and run daily
>> tests against it as part of test-drive.airavata.org.
>>
>> Marlon
>>
>> On 1/7/15 12:31 PM, K Yoshimoto wrote:
>>> Was it stable enough to use outside the demo? Any problems to note?
>>>
>>> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
>>>> + 1 for the release.
>>>>
>>>> P.S. I was able to demo this RC2 in a talk and couple of participants
>>>> followed along successfully.
>>>>
>>>>
>>>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com>
>>>> wrote:
>>>>
>>>>> Apache Airavata PMC is pleased to call for a vote on the following
>>>>> Apache Airavata 0.14 release candidate artifacts:
>>>>>
>>>>> Detailed change log/release notes:
>>>>>
>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>>>>
>>>>>
>>>>> All Release Artifacts:
>>>>>
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>>>>
>>>>>
>>>>> PGP release keys (signed using 65541DBC):
>>>>>
>>>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
>>>>>
>>>>>
>>>>> Specific URL's:
>>>>>
>>>>>
>>>>> GIT source tag:
>>>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
>>>>>
>>>>> Source release:
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
>>>>>
>>>>> Binary Artifacts:
>>>>>
>>>>> Airavata Server:
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
>>>>>
>>>>> API Server
>>>>>
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>>>>>
>>>>> GFac Server
>>>>>
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>>>>>
>>>>> Orchestrator Server
>>>>>
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>>>>>
>>>>> Xbaya Distribution
>>>>>
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>>>>>
>>>>> Client SDKs
>>>>>
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>>>>>
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
>>>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>>>>>
>>>>> Maven staging repo:
>>>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
>>>>>
>>>>> Please verify the artifacts and vote. The vote will be open for atleast
>>>>> 72 hours.
>>>>>
>>>>> [ ] +1 approve
>>>>> [ ] +0 no opinion
>>>>> [ ] -1 disapprove (and reason why)
>>>>>
>>>>>
>>>>> [ ] +1 approve
>>>>> [ ] +0 no opinion
>>>>> [ ] -1 disapprove (and reason why)
>>>>>
>>>>>
>>>>>
>>>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by K Yoshimoto <ke...@sdsc.edu>.
I grabbed the source release from
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
and built that. The server startup script is still broken for
Ubuntu when run as the quick start describes (sh airavata-server.sh),
but works when invoked as ./airavata-server.sh.
Registering sample apps and xbaya workflow construction work.
Not sure when the xbaya workflow construction would be useful?
Running the workflow generates output in /tmp.
I would like to try creating new experiments and running them.
I will be playing with the python client. Are all the samples in
airavata-0.14/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples
up-to-date? I'll probably go by them to try registering new experiments
and running them with the python client, unless anyone has documentation handy.
Kenneth
On Wed, Jan 07, 2015 at 12:56:00PM -0500, Marlon Pierce wrote:
> We also run the server components (not XBaya) full time and run daily
> tests against it as part of test-drive.airavata.org.
>
> Marlon
>
> On 1/7/15 12:31 PM, K Yoshimoto wrote:
> >Was it stable enough to use outside the demo? Any problems to note?
> >
> >On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> >>+ 1 for the release.
> >>
> >>P.S. I was able to demo this RC2 in a talk and couple of participants
> >>followed along successfully.
> >>
> >>
> >>On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com>
> >>wrote:
> >>
> >>>Apache Airavata PMC is pleased to call for a vote on the following
> >>>Apache Airavata 0.14 release candidate artifacts:
> >>>
> >>>Detailed change log/release notes:
> >>>
> >>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >>>
> >>>
> >>>All Release Artifacts:
> >>>
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >>>
> >>>
> >>>PGP release keys (signed using 65541DBC):
> >>>
> >>>https://dist.apache.org/repos/dist/release/airavata/KEYS
> >>>
> >>>
> >>>Specific URL's:
> >>>
> >>>
> >>>GIT source tag:
> >>>https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >>>
> >>>Source release:
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >>>
> >>>Binary Artifacts:
> >>>
> >>>Airavata Server:
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >>>
> >>>API Server
> >>>
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >>>
> >>>GFac Server
> >>>
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >>>
> >>>Orchestrator Server
> >>>
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >>>
> >>>Xbaya Distribution
> >>>
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >>>
> >>>Client SDKs
> >>>
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >>>
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> >>>https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >>>
> >>>Maven staging repo:
> >>>https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >>>
> >>>Please verify the artifacts and vote. The vote will be open for atleast
> >>>72 hours.
> >>>
> >>>[ ] +1 approve
> >>>[ ] +0 no opinion
> >>>[ ] -1 disapprove (and reason why)
> >>>
> >>>
> >>>[ ] +1 approve
> >>>[ ] +0 no opinion
> >>>[ ] -1 disapprove (and reason why)
> >>>
> >>>
> >>>
> >>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Marlon Pierce <ma...@iu.edu>.
We also run the server components (not XBaya) full time and run daily
tests against it as part of test-drive.airavata.org.
Marlon
On 1/7/15 12:31 PM, K Yoshimoto wrote:
> Was it stable enough to use outside the demo? Any problems to note?
>
> On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
>> + 1 for the release.
>>
>> P.S. I was able to demo this RC2 in a talk and couple of participants followed along successfully.
>>
>>
>> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com> wrote:
>>
>>> Apache Airavata PMC is pleased to call for a vote on the following Apache Airavata 0.14 release candidate artifacts:
>>>
>>> Detailed change log/release notes:
>>>
>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>>
>>>
>>> All Release Artifacts:
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>>
>>>
>>> PGP release keys (signed using 65541DBC):
>>>
>>> https://dist.apache.org/repos/dist/release/airavata/KEYS
>>>
>>>
>>> Specific URL's:
>>>
>>>
>>> GIT source tag:
>>> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
>>>
>>> Source release:
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
>>>
>>> Binary Artifacts:
>>>
>>> Airavata Server:
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
>>>
>>> API Server
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>>>
>>> GFac Server
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>>>
>>> Orchestrator Server
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>>>
>>> Xbaya Distribution
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>>>
>>> Client SDKs
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>>>
>>> Maven staging repo:
>>> https://repository.apache.org/content/repositories/orgapacheairavata-1005
>>>
>>> Please verify the artifacts and vote. The vote will be open for atleast 72 hours.
>>>
>>> [ ] +1 approve
>>> [ ] +0 no opinion
>>> [ ] -1 disapprove (and reason why)
>>>
>>>
>>> [ ] +1 approve
>>> [ ] +0 no opinion
>>> [ ] -1 disapprove (and reason why)
>>>
>>>
>>>
>>>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by K Yoshimoto <ke...@sdsc.edu>.
Was it stable enough to use outside the demo? Any problems to note?
On Wed, Jan 07, 2015 at 10:48:58PM +0530, Suresh Marru wrote:
> + 1 for the release.
>
> P.S. I was able to demo this RC2 in a talk and couple of participants followed along successfully.
>
>
> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com> wrote:
>
> > Apache Airavata PMC is pleased to call for a vote on the following Apache Airavata 0.14 release candidate artifacts:
> >
> > Detailed change log/release notes:
> >
> > https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >
> >
> > All Release Artifacts:
> >
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >
> >
> > PGP release keys (signed using 65541DBC):
> >
> > https://dist.apache.org/repos/dist/release/airavata/KEYS
> >
> >
> > Specific URL's:
> >
> >
> > GIT source tag:
> > https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >
> > Source release:
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >
> > Binary Artifacts:
> >
> > Airavata Server:
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >
> > API Server
> >
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >
> > GFac Server
> >
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >
> > Orchestrator Server
> >
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >
> > Xbaya Distribution
> >
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >
> > Client SDKs
> >
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >
> > Maven staging repo:
> > https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >
> > Please verify the artifacts and vote. The vote will be open for atleast 72 hours.
> >
> > [ ] +1 approve
> > [ ] +0 no opinion
> > [ ] -1 disapprove (and reason why)
> >
> >
> > [ ] +1 approve
> > [ ] +0 no opinion
> > [ ] -1 disapprove (and reason why)
> >
> >
> >
> >
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Chathuri Wimalasena <ka...@gmail.com>.
+1 for the release.
On Wed, Jan 7, 2015 at 12:18 PM, Suresh Marru <sm...@apache.org> wrote:
> + 1 for the release.
>
> P.S. I was able to demo this RC2 in a talk and couple of participants
> followed along successfully.
>
>
> On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com>
> wrote:
>
> > Apache Airavata PMC is pleased to call for a vote on the following
> Apache Airavata 0.14 release candidate artifacts:
> >
> > Detailed change log/release notes:
> >
> >
> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
> >
> >
> > All Release Artifacts:
> >
> > https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
> >
> >
> > PGP release keys (signed using 65541DBC):
> >
> > https://dist.apache.org/repos/dist/release/airavata/KEYS
> >
> >
> > Specific URL's:
> >
> >
> > GIT source tag:
> >
> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
> >
> > Source release:
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
> >
> > Binary Artifacts:
> >
> > Airavata Server:
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
> >
> > API Server
> >
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
> >
> > GFac Server
> >
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
> >
> > Orchestrator Server
> >
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
> >
> > Xbaya Distribution
> >
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
> >
> > Client SDKs
> >
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
> >
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> >
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
> >
> > Maven staging repo:
> >
> https://repository.apache.org/content/repositories/orgapacheairavata-1005
> >
> > Please verify the artifacts and vote. The vote will be open for atleast
> 72 hours.
> >
> > [ ] +1 approve
> > [ ] +0 no opinion
> > [ ] -1 disapprove (and reason why)
> >
> >
> > [ ] +1 approve
> > [ ] +0 no opinion
> > [ ] -1 disapprove (and reason why)
> >
> >
> >
> >
>
>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Suresh Marru <sm...@apache.org>.
+ 1 for the release.
P.S. I was able to demo this RC2 in a talk and couple of participants followed along successfully.
On Dec 30, 2014, at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com> wrote:
> Apache Airavata PMC is pleased to call for a vote on the following Apache Airavata 0.14 release candidate artifacts:
>
> Detailed change log/release notes:
>
> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>
>
> All Release Artifacts:
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>
>
> PGP release keys (signed using 65541DBC):
>
> https://dist.apache.org/repos/dist/release/airavata/KEYS
>
>
> Specific URL's:
>
>
> GIT source tag:
> https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14
>
> Source release:
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip
>
> Binary Artifacts:
>
> Airavata Server:
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
>
> API Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>
> GFac Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>
> Orchestrator Server
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>
> Xbaya Distribution
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>
> Client SDKs
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>
> Maven staging repo:
> https://repository.apache.org/content/repositories/orgapacheairavata-1005
>
> Please verify the artifacts and vote. The vote will be open for atleast 72 hours.
>
> [ ] +1 approve
> [ ] +0 no opinion
> [ ] -1 disapprove (and reason why)
>
>
> [ ] +1 approve
> [ ] +0 no opinion
> [ ] -1 disapprove (and reason why)
>
>
>
>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Sachith Withana <sw...@gmail.com>.
+1 for the release.
On Wed, Jan 7, 2015 at 3:23 AM, Marlon Pierce <ma...@iu.edu> wrote:
> +1 for the release.
>
> Marlon
>
> On 1/6/15 10:05 AM, Supun Nakandala wrote:
>
>> +1
>>
>> On Tue, Dec 30, 2014 at 1:34 AM, Chathuri Wimalasena <
>> kamalasini@gmail.com>
>> wrote:
>>
>> Apache Airavata PMC is pleased to call for a vote on the following
>>> Apache Airavata 0.14 release candidate artifacts:
>>>
>>> Detailed change log/release notes:https://git-wip-us.
>>> apache.org/repos/asf?p=airavata.git;a=blob_plain;f=
>>> RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>>
>>> All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.
>>> 14/RC2/
>>>
>>> PGP release keys (signed using 65541DBC):https://dist.apache.
>>> org/repos/dist/release/airavata/KEYS
>>>
>>> Specific URL's:
>>> GIT source tag:
>>> *https://git-wip-us.apache.org/repos/asf?p=airavata.git;
>>> a=shortlog;h=refs/tags/airavata-0.14 <https://git-wip-us.apache.
>>> org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14>*
>>>
>>> Source release:
>>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/airavata-0.14-source-release.zip <https://dist.apache.org/
>>> repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip>*
>>>
>>> Binary Artifacts:
>>>
>>> Airavata Server:
>>>
>>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/apache-airavata-server-0.14-bin.zip <https://dist.apache.org/
>>> repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip>*
>>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/
>>> RC2/apache-airavata-server-0.14-bin.tar.gz <https://dist.apache.org/
>>> repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz
>>> >*
>>>
>>> API Server
>>>
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-api-server-0.14-bin.tar.gz
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-api-server-0.14-bin.zip
>>>
>>> GFac Server
>>>
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-gfac-server-0.14-bin.tar.gz
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-gfac-server-0.14-bin.zip
>>>
>>> Orchestrator Server
>>>
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-orchestrator-server-0.14-bin.tar.gz
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-orchestrator-server-0.14-bin.zip
>>>
>>> Xbaya Distribution
>>>
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-xbaya-gui-0.14-bin.tar.gz
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-xbaya-gui-0.14-bin.zip
>>>
>>> Client SDKs
>>>
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-client-java-sdk-0.14-bin.tar.gz
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-client-java-sdk-0.14-bin.zip
>>>
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-client-php-sdk-0.14-bin.tar.gz
>>>
>>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>> apache-airavata-client-php-sdk-0.14-bin.zip
>>>
>>>
>>> Maven staging repo:
>>> *https://repository.apache.org/content/repositories/
>>> orgapacheairavata-1005 <https://repository.apache.
>>> org/content/repositories/orgapacheairavata-1005>*
>>>
>>> Please verify the artifacts and vote. The vote will be open for atleast
>>> 72 hours.
>>>
>>> [ ] +1 approve
>>> [ ] +0 no opinion
>>> [ ] -1 disapprove (and reason why)
>>>
>>> [ ] +1 approve
>>> [ ] +0 no opinion
>>> [ ] -1 disapprove (and reason why)
>>>
>>>
>>>
>>>
>>>
>>>
>>
>
--
Thanks,
Sachith Withana
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Marlon Pierce <ma...@iu.edu>.
+1 for the release.
Marlon
On 1/6/15 10:05 AM, Supun Nakandala wrote:
> +1
>
> On Tue, Dec 30, 2014 at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com>
> wrote:
>
>> Apache Airavata PMC is pleased to call for a vote on the following Apache Airavata 0.14 release candidate artifacts:
>>
>> Detailed change log/release notes:https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>>
>> All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>>
>> PGP release keys (signed using 65541DBC):https://dist.apache.org/repos/dist/release/airavata/KEYS
>>
>> Specific URL's:
>> GIT source tag:
>> *https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14 <https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14>*
>>
>> Source release:
>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip>*
>>
>> Binary Artifacts:
>>
>> Airavata Server:
>>
>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip>*
>> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz>*
>>
>> API Server
>>
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>>
>> GFac Server
>>
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>>
>> Orchestrator Server
>>
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>>
>> Xbaya Distribution
>>
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>>
>> Client SDKs
>>
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>>
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
>>
>> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>>
>>
>> Maven staging repo:
>> *https://repository.apache.org/content/repositories/orgapacheairavata-1005 <https://repository.apache.org/content/repositories/orgapacheairavata-1005>*
>>
>> Please verify the artifacts and vote. The vote will be open for atleast 72 hours.
>>
>> [ ] +1 approve
>> [ ] +0 no opinion
>> [ ] -1 disapprove (and reason why)
>>
>> [ ] +1 approve
>> [ ] +0 no opinion
>> [ ] -1 disapprove (and reason why)
>>
>>
>>
>>
>>
>
Re: [VOTE] Apache Airavata release 0.14 - RC2
Posted by Supun Nakandala <su...@gmail.com>.
+1
On Tue, Dec 30, 2014 at 1:34 AM, Chathuri Wimalasena <ka...@gmail.com>
wrote:
> Apache Airavata PMC is pleased to call for a vote on the following Apache Airavata 0.14 release candidate artifacts:
>
> Detailed change log/release notes:https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=blob_plain;f=RELEASE_NOTES;hb=refs/tags/airavata-0.14
>
> All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
>
> PGP release keys (signed using 65541DBC):https://dist.apache.org/repos/dist/release/airavata/KEYS
>
> Specific URL's:
> GIT source tag:
> *https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14 <https://git-wip-us.apache.org/repos/asf?p=airavata.git;a=shortlog;h=refs/tags/airavata-0.14>*
>
> Source release:
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/airavata-0.14-source-release.zip>*
>
> Binary Artifacts:
>
> Airavata Server:
>
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.zip>*
> *https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz <https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-server-0.14-bin.tar.gz>*
>
> API Server
>
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.tar.gz
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-api-server-0.14-bin.zip
>
> GFac Server
>
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.tar.gz
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-gfac-server-0.14-bin.zip
>
> Orchestrator Server
>
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.tar.gz
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-orchestrator-server-0.14-bin.zip
>
> Xbaya Distribution
>
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.tar.gz
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-xbaya-gui-0.14-bin.zip
>
> Client SDKs
>
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.tar.gz
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-java-sdk-0.14-bin.zip
>
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.tar.gz
>
> https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/apache-airavata-client-php-sdk-0.14-bin.zip
>
>
> Maven staging repo:
> *https://repository.apache.org/content/repositories/orgapacheairavata-1005 <https://repository.apache.org/content/repositories/orgapacheairavata-1005>*
>
> Please verify the artifacts and vote. The vote will be open for atleast 72 hours.
>
> [ ] +1 approve
> [ ] +0 no opinion
> [ ] -1 disapprove (and reason why)
>
> [ ] +1 approve
> [ ] +0 no opinion
> [ ] -1 disapprove (and reason why)
>
>
>
>
>
--
Thank you
Supun Nakandala
Dept. Computer Science and Engineering
University of Moratuwa