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Posted to notifications@accumulo.apache.org by "Josh Elser (JIRA)" <ji...@apache.org> on 2014/10/10 01:18:34 UTC
[jira] [Resolved] (ACCUMULO-3215) Import tries to use default DFS
directory instead of configured
[ https://issues.apache.org/jira/browse/ACCUMULO-3215?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Josh Elser resolved ACCUMULO-3215.
----------------------------------
Resolution: Fixed
Fixed ImportTable to create proper metadata file entries and added an IT to test for regression.
> Import tries to use default DFS directory instead of configured
> ---------------------------------------------------------------
>
> Key: ACCUMULO-3215
> URL: https://issues.apache.org/jira/browse/ACCUMULO-3215
> Project: Accumulo
> Issue Type: Bug
> Components: tserver
> Affects Versions: 1.6.1
> Reporter: Josh Elser
> Assignee: Josh Elser
> Priority: Critical
> Fix For: 1.6.2, 1.7.0
>
> Time Spent: 20m
> Remaining Estimate: 0h
>
> Ran Shard randomwalk and saw a failure about a bulk imported file. Oddly, the path that it referenced was for the default dfs directory /accumulo instead of the configured volume I set /apps/accumulo.
> Additionally, bulk import is placing relative paths into metadata and not absolute paths, which also seems rather strange.
> {noformat}
> 2014-10-08 12:13:56,230 [tserver.Tablet] DEBUG: Looking at metadata {2s< file:/b-00004ee/I00004ef.rf [] 33312 false=269198,66282, 2s< file:/b-00004ee/I00004eg.rf [] 33312 false=251133,75656, ..., 2s< file:/b-00004ee/I00004f0.rf [] 33312 false=281377,54556, ..., 2s< future:148f0574f320007 [] 33313 false=node3.example.com:9997, 2s< srv:dir [] 33312 false=/c-00000000, 2s< srv:time [] 33312 false=M1412795627612, 2s< ~tab:~pr [] 33312 false=^@}
> {noformat}
> {noformat}
> 2014-10-08 12:13:56,658 [fs.VolumeManagerImpl] DEBUG: Found candidate Volumes for Path but none of the Paths are valid on the candidates: hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf
> 2014-10-08 12:13:56,658 [fs.VolumeManagerImpl] DEBUG: Could not determine volume for Path: hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf
> 2014-10-08 12:13:56,673 [tserver.TabletServer] DEBUG: MultiScanSess 240.0.0.10:36725 22 entries in 0.05 secs (lookup_time:0.05 secs tablets:1 ranges:1)
> 2014-10-08 12:13:56,678 [tserver.FileManager] ERROR: Failed to open file hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf File does not exist: /accumulo/tables/2s/b-00004ee/I00004f0.rf
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1876)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1818)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1798)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1770)
> at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:527)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:362)
> at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:619)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:962)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2039)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2035)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2033)
> 2014-10-08 12:13:56,679 [tserver.TabletServer] WARN : exception while scanning tablet 2s<<
> java.io.IOException: Failed to open hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf
> at org.apache.accumulo.tserver.FileManager.reserveReaders(FileManager.java:334)
> at org.apache.accumulo.tserver.FileManager.access$500(FileManager.java:59)
> at org.apache.accumulo.tserver.FileManager$ScanFileManager.openFiles(FileManager.java:491)
> at org.apache.accumulo.tserver.FileManager$ScanFileManager.openFileRefs(FileManager.java:479)
> at org.apache.accumulo.tserver.FileManager$ScanFileManager.openFiles(FileManager.java:499)
> at org.apache.accumulo.tserver.Tablet$ScanDataSource.createIterator(Tablet.java:2032)
> at org.apache.accumulo.tserver.Tablet$ScanDataSource.iterator(Tablet.java:1994)
> at org.apache.accumulo.core.iterators.system.SourceSwitchingIterator.seek(SourceSwitchingIterator.java:165)
> at org.apache.accumulo.tserver.Tablet.nextBatch(Tablet.java:1709)
> at org.apache.accumulo.tserver.Tablet.access$3200(Tablet.java:177)
> at org.apache.accumulo.tserver.Tablet$Scanner.read(Tablet.java:1851)
> at org.apache.accumulo.tserver.TabletServer$ThriftClientHandler$NextBatchTask.run(TabletServer.java:1049)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at org.apache.accumulo.trace.instrument.TraceRunnable.run(TraceRunnable.java:47)
> at org.apache.accumulo.core.util.LoggingRunnable.run(LoggingRunnable.java:34)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: java.io.FileNotFoundException: File does not exist: /accumulo/tables/2s/b-00004ee/I00004f0.rf
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1876)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1818)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1798)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1770)
> at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:527)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:362)
> at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:619)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:962)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2039)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2035)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2033)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
> at org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
> at org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:73)
> at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1192)
> at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1180)
> at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1170)
> at org.apache.hadoop.hdfs.DFSInputStream.fetchLocatedBlocksAndGetLastBlockLength(DFSInputStream.java:270)
> at org.apache.hadoop.hdfs.DFSInputStream.openInfo(DFSInputStream.java:237)
> at org.apache.hadoop.hdfs.DFSInputStream.<init>(DFSInputStream.java:230)
> at org.apache.hadoop.hdfs.DFSClient.open(DFSClient.java:1430)
> at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:302)
> at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:298)
> at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
> at org.apache.hadoop.hdfs.DistributedFileSystem.open(DistributedFileSystem.java:298)
> at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:766)
> at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.getBCFile(CachableBlockFile.java:261)
> at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.access$100(CachableBlockFile.java:144)
> at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader$MetaBlockLoader.get(CachableBlockFile.java:216)
> at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.getBlock(CachableBlockFile.java:318)
> at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.getMetaBlock(CachableBlockFile.java:372)
> at org.apache.accumulo.core.file.blockfile.impl.CachableBlockFile$Reader.getMetaBlock(CachableBlockFile.java:144)
> at org.apache.accumulo.core.file.rfile.RFile$Reader.<init>(RFile.java:825)
> at org.apache.accumulo.core.file.rfile.RFileOperations.openReader(RFileOperations.java:79)
> at org.apache.accumulo.core.file.DispatchingFileFactory.openReader(FileOperations.java:119)
> at org.apache.accumulo.tserver.FileManager.reserveReaders(FileManager.java:315)
> ... 17 more
> Caused by: org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does not exist: /accumulo/tables/2s/b-00004ee/I00004f0.rf
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1876)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1818)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1798)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1770)
> at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:527)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:362)
> at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:619)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:962)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2039)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2035)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1614)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2033)
> at org.apache.hadoop.ipc.Client.call(Client.java:1468)
> at org.apache.hadoop.ipc.Client.call(Client.java:1399)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:232)
> at com.sun.proxy.$Proxy19.getBlockLocations(Unknown Source)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getBlockLocations(ClientNamenodeProtocolTranslatorPB.java:253)
> at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown Source)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
> at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
> at com.sun.proxy.$Proxy20.getBlockLocations(Unknown Source)
> at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1190)
> ... 38 more
> 2014-10-08 12:13:56,684 [problems.ProblemReports] DEBUG: Filing problem report 2s FILE_READ hdfs://node1.example.com:8020/accumulo/tables/2s/b-00004ee/I00004f0.rf
> {noformat}
> {{/accumulo/tables/2s/b-00004ee/I00004f0.rf}} is an invalid path on my system given the configuration
> {noformat}
> <property>
> <name>instance.volumes</name>
> <value>hdfs://node1.example.com:8020/apps/accumulo</value>
> </property>
> {noformat}
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