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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2016/11/07 17:02:19 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #891
See <https://builds.apache.org/job/ctakes-trunk-compiletest/891/changes>
Changes:
[dligach] going back to the full set of instances (used to be UMLS args only)
[seanfinan] Refactored the name of HelloWorld.piper
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[...truncated 3622 lines...]
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_unknown.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/testfakenote.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/testpatient_plaintext_1.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/testpatient_plaintext_2.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_current.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_current.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/sample_note_plaintext.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_past_smoker.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/SampleInputRadiologyNotes.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_past_smoker.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/text1.txt.xml
A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/sample_note.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_past_smoker.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/SampleInputRadiologyNotes.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_past_smoker.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/text1.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/sample_note.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_unknown.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testfakenote.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_1.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_2.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_current.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_current.txt.xml
A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/sample_note_plaintext.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note.xml
AU ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/edge_cases_plaintext_1.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_unknown.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testfakenote.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_1.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_2.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_current.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_current.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_past_smoker.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/SampleInputRadiologyNotes.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_past_smoker.txt.xml
A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml
A ctakes-assertion-res
A ctakes-assertion-res/LICENSE
A ctakes-assertion-res/src
A ctakes-assertion-res/src/test
A ctakes-assertion-res/src/main
A ctakes-assertion-res/src/main/resources
A ctakes-assertion-res/src/main/resources/org
A ctakes-assertion-res/src/main/resources/org/apache
A ctakes-assertion-res/src/main/resources/org/apache/ctakes
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/featureFile11b
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AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/subject/model.jar
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AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpPolarityFrags.txt
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/conditional
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/conditional/model.jar
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/polarity
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/polarity/sharpi2b2mipacqnegex
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/polarity/sharpi2b2mipacqnegex/model.jar
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpUncertaintyFrags.txt
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/uncertainty
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/uncertainty/model.jar
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/scope.model
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/cue.model
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A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/history.txt
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/polarity.txt
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/uncertainty.txt
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AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/i2b2.model
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/all_cues.txt
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/pipeline
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/pipeline/AttributeCleartkSubPipe.piper
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/pipeline/AssertionSubPipe.piper
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words.txt
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/conditional.psv
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/negation_cue_class.psv
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/speculation.psv
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/not_patient_cue_list.psv
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/hypothetical.psv
A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/disappear.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/fail.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/association.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/def_determiner.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/evidence.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/continue.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/hypothetical_cue_list.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/change_state.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/stop.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/experience.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/exception.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/allergy.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/deny.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/cause.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/history.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/avoid.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/certainty.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/decline.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/instance.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/uncertainty.txt
AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/copular.txt
A ctakes-assertion-res/pom.xml
A ctakes-assertion-res/resources
A ctakes-assertion-res/resources/model
A ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex
A ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex/polarity
A ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex/polarity/training-data.liblinear
AU ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex/polarity/MANIFEST.MF
AU ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex/polarity/encoders.ser
AU ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex/polarity/model.jar
A ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex/polarity/model.liblinear
AU ctakes-assertion-res/resources/model/sharpi2b2mipacqnegex/polarity/outcome-lookup.txt
A ctakes-utils
A ctakes-utils/LICENSE
A ctakes-utils/scripts
A ctakes-utils/scripts/knowtatorTools
A ctakes-utils/scripts/knowtatorTools/crtNominateAndTransform.bat
A ctakes-utils/scripts/knowtatorTools/copyKnowtatorFiles.bat
A ctakes-utils/scripts/knowtatorTools/createGroupDocs.bat
AU ctakes-utils/scripts/knowtatorTools/cTakesNeToKnowtatorAnnotation (for Apache UIMA and cTAKES).launch
A ctakes-utils/scripts/knowtatorTools/createGroupTransform.bat
A ctakes-utils/src
A ctakes-utils/src/main
A ctakes-utils/src/main/java
A ctakes-utils/src/main/java/org
A ctakes-utils/src/main/java/org/apache
A ctakes-utils/src/main/java/org/apache/ctakes
A ctakes-utils/src/main/java/org/apache/ctakes/utils
A ctakes-utils/src/main/java/org/apache/ctakes/utils/struct
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/struct/CounterMap.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/struct/CounterTreeMap.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/struct/MapFactory.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/distsem
A ctakes-utils/src/main/java/org/apache/ctakes/utils/distsem/WordEmbeddings.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/distsem/WordVector.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/distsem/DistanceMetrics.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/distsem/WordVectorReader.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/env
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/env/EnvironmentVariable.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/XcasFile.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/XcasProcessor.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/Compare.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/Const.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/attributes_to_ignore.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/XcasDiff.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/XcasAnnotation.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/xcas_comparison/ConvertAndCompare.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/InstallPipelineFromPears.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.NE contexts.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.POS tagger.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.dependency parser.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.coref-resolver.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPipelinePears.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.chunker.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.dictionary lookup.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.SideEffect.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.Constituency Parser.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.Drug NER.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.context dependent tokenizer.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.smoking status.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.PAD term spotter.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/InstallPearSilently.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.document preprocessor.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.clinical documents pipeline.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.LVG.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/build/BuildPear.core.properties
A ctakes-utils/src/main/java/org/apache/ctakes/utils/test
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/test/TestUtil.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/tree
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/tree/SimpleTree.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/tree/FragmentUtils.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/kernel
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/kernel/LinearKernel.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/kernel/Kernel.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/kernel/PolyKernel.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/kernel/RBFKernel.java
A ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/ApproximateSimilarity.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/ApproximateMath.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/SearchResult.java
AU ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/TestCosineSimilarity.java
A ctakes-utils/pom.xml
U .
At revision 1768556
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hudson.maven.MavenModule@495990be[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex][relativePath:ctakes-ytex], hudson.maven.MavenModule@26756a05[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-res][relativePath:ctakes-ytex-res], hudson.maven.MavenModule@164706dd[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-uima][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-uima][relativePath:ctakes-ytex-uima], hudson.maven.MavenModule@7e655a7a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-web][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-web][relativePath:ctakes-ytex-web]]
project.getRootModule()=hudson.maven.MavenModule@2744774e[ctakes-trunk-compiletest/org.apache.ctakes:ctakes][ctakes-trunk-compiletest/org.apache.ctakes:ctakes][relativePath:]
FATAL: /home/jenkins/tools/maven/apache-maven-3.0.5 doesn't have a 'lib' subdirectory - thus cannot be a valid maven installation!
java.lang.IllegalArgumentException: /home/jenkins/tools/maven/apache-maven-3.0.5 doesn't have a 'lib' subdirectory - thus cannot be a valid maven installation!
at hudson.maven.MavenEmbedderUtils.buildClassRealm(MavenEmbedderUtils.java:83)
at hudson.maven.MavenEmbedderUtils.getMavenVersion(MavenEmbedderUtils.java:188)
at hudson.maven.MavenVersionCallable.call(MavenVersionCallable.java:70)
at hudson.maven.MavenVersionCallable.call(MavenVersionCallable.java:42)
at hudson.remoting.UserRequest.perform(UserRequest.java:153)
at hudson.remoting.UserRequest.perform(UserRequest.java:50)
at hudson.remoting.Request$2.run(Request.java:332)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
at ......remote call to jenkins-test-328(Native Method)
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1416)
at hudson.remoting.UserResponse.retrieve(UserRequest.java:253)
at hudson.remoting.Channel.call(Channel.java:781)
at hudson.FilePath.act(FilePath.java:1102)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:629)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1741)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:531)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)