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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 12:17:26 UTC

[10/52] [abbrv] incubator-taverna-language git commit: outdated usecase removed

outdated usecase removed


Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/commit/cfd67b7a
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/tree/cfd67b7a
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/diff/cfd67b7a

Branch: refs/heads/master
Commit: cfd67b7ae135d3d1318a8ac5d861ae0792beb212
Parents: 72cbd2d
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Tue Feb 10 15:09:39 2015 +0000
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Tue Feb 10 15:09:39 2015 +0000

----------------------------------------------------------------------
 taverna-scufl2-usecases/.gitignore              |   1 -
 taverna-scufl2-usecases/LICENSE.txt             |  30 -----
 taverna-scufl2-usecases/pom.xml                 |  62 ---------
 .../main/resources/sample-output.data-bundle    | Bin 5071 -> 0 bytes
 .../sample-output/META-INF/container.xml        |  30 -----
 .../sample-output/META-INF/manifest.xml         |  55 --------
 .../src/main/resources/sample-output/inputs.rdf |  37 ------
 .../src/main/resources/sample-output/inputs.ttl |  12 --
 .../src/main/resources/sample-output/mimetype   |   1 -
 .../sample-output/outputs-nested-tiny.rdf       | 107 ---------------
 .../sample-output/outputs-nested-tiny.ttl       |  62 ---------
 .../resources/sample-output/outputs-nested.rdf  | 124 ------------------
 .../resources/sample-output/outputs-nested.ttl  |  83 ------------
 .../main/resources/sample-output/outputs.rdf    | 131 -------------------
 .../main/resources/sample-output/outputs.ttl    |  86 ------------
 .../main/resources/sample-output/outputs/fish/0 |   1 -
 .../main/resources/sample-output/outputs/fish/1 |   1 -
 .../resources/sample-output/outputs/results     |   1 -
 .../resources/sample-output/outputs/soup/0/0    |   1 -
 .../resources/sample-output/outputs/soup/0/1    |   1 -
 20 files changed, 826 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/.gitignore
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diff --git a/taverna-scufl2-usecases/.gitignore b/taverna-scufl2-usecases/.gitignore
deleted file mode 100644
index ea8c4bf..0000000
--- a/taverna-scufl2-usecases/.gitignore
+++ /dev/null
@@ -1 +0,0 @@
-/target

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/LICENSE.txt
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/LICENSE.txt b/taverna-scufl2-usecases/LICENSE.txt
deleted file mode 100644
index 0f327ce..0000000
--- a/taverna-scufl2-usecases/LICENSE.txt
+++ /dev/null
@@ -1,30 +0,0 @@
-Simplified 2-Clause BSD license
-===============================
-
-Copyright (c) 2010-2011, myGrid, University of Mancester, UK
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are
-met:
-
-Redistributions of source code must retain the above copyright notice,
-this list of conditions and the following disclaimer.
-
-Redistributions in binary form must reproduce the above copyright
-notice, this list of conditions and the following disclaimer in the
-documentation and/or other materials provided with the distribution.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
-IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
-TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
-PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
-HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
-TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
-PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-[1] http://www.opensource.org/licenses/bsd-license.php

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/pom.xml b/taverna-scufl2-usecases/pom.xml
deleted file mode 100644
index ad00100..0000000
--- a/taverna-scufl2-usecases/pom.xml
+++ /dev/null
@@ -1,62 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-   Licensed to the Apache Software Foundation (ASF) under one or more
-   contributor license agreements.  See the NOTICE file distributed with
-   this work for additional information regarding copyright ownership.
-   The ASF licenses this file to You under the Apache License, Version 2.0
-   (the "License"); you may not use this file except in compliance with
-   the License.  You may obtain a copy of the License at
-
-       http://www.apache.org/licenses/LICENSE-2.0
-
-   Unless required by applicable law or agreed to in writing, software
-   distributed under the License is distributed on an "AS IS" BASIS,
-   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-   See the License for the specific language governing permissions and
-   limitations under the License.
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<parent>
-		<groupId>org.apache.taverna.language</groupId>
-		<artifactId>taverna-language</artifactId>
-		<version>0.15.0-incubating-SNAPSHOT</version>
-	</parent>
-	<artifactId>taverna-scufl2-usecases</artifactId>
-	<name>Apache Taverna Scufl 2 use cases</name>
-	<description>Use cases for exercising the SCUFL2 APIs and formats</description>
-	<url>http://www.mygrid.org.uk/dev/wiki/display/developer/SCUFL2+use+cases</url>
-	<dependencies>
-		<dependency>
-			<groupId>${project.groupId}</groupId>
-			<artifactId>taverna-scufl2-api</artifactId>
-			<version>${project.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>${project.groupId}</groupId>
-			<artifactId>taverna-scufl2-rdfxml</artifactId>
-			<version>${project.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>${project.groupId}</groupId>
-			<artifactId>taverna-scufl2-t2flow</artifactId>
-			<version>${project.version}</version>
-		</dependency>
-		<dependency>
-			<groupId>commons-io</groupId>
-			<artifactId>commons-io</artifactId>
-			<scope>compile</scope>
-		</dependency>
-		<dependency>
-			<groupId>${project.groupId}</groupId>
-			<artifactId>taverna-scufl2-api</artifactId>
-			<version>${project.version}</version>
-			<type>test-jar</type>
-		</dependency>
-		<dependency>
-			<groupId>com.sun.xml.bind</groupId>
-			<artifactId>jaxb-osgi</artifactId>
-			<optional>true</optional>
-		</dependency>
-	</dependencies>
-</project>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output.data-bundle
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output.data-bundle b/taverna-scufl2-usecases/src/main/resources/sample-output.data-bundle
deleted file mode 100644
index 0c1f168..0000000
Binary files a/taverna-scufl2-usecases/src/main/resources/sample-output.data-bundle and /dev/null differ

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/META-INF/container.xml
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/META-INF/container.xml b/taverna-scufl2-usecases/src/main/resources/sample-output/META-INF/container.xml
deleted file mode 100644
index 2d31270..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/META-INF/container.xml
+++ /dev/null
@@ -1,30 +0,0 @@
-<?xml version="1.0"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<container version="1.0"
-	xmlns="urn:oasis:names:tc:opendocument:xmlns:container">
-	<rootfiles>
-		<rootfile full-path="outputs.rdf" media-type="application/rdf+xml" />
-		<rootfile full-path="outputs.ttl" media-type="text/turtle" />
-		<rootfile full-path="outputs" media-type="application/vnd.taverna.port-data" />
-	</rootfiles>
-</container>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/META-INF/manifest.xml
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/META-INF/manifest.xml b/taverna-scufl2-usecases/src/main/resources/sample-output/META-INF/manifest.xml
deleted file mode 100644
index 472e5d5..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/META-INF/manifest.xml
+++ /dev/null
@@ -1,55 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<manifest:manifest xmlns:manifest="urn:oasis:names:tc:opendocument:xmlns:manifest:1.0">
-	<manifest:file-entry manifest:full-path="/"
-		manifest:media-type="application/vnd.taverna.data-bundle" />
-		
-	<manifest:file-entry manifest:full-path="outputs.rdf"
-		manifest:media-type="application/rdf+xml" />		
-	<manifest:file-entry manifest:full-path="outputs" />
-		
-	<manifest:file-entry manifest:full-path="outputs/fish" />
-	<manifest:file-entry manifest:full-path="outputs/fish/0.txt"
-		manifest:media-type="text/plain" manifest:size="23" />
-	<manifest:file-entry manifest:full-path="outputs/fish/1.uri"
-		manifest:media-type="text/uri-list" manifest:size="19" />
-	
-	<manifest:file-entry manifest:full-path="outputs/soup" />
-	<manifest:file-entry manifest:full-path="outputs/soup/0" />
-	<manifest:file-entry manifest:full-path="outputs/soup/0/0.jpg"
-		manifest:media-type="image/jpeg" manifest:size="91344" />
-	<manifest:file-entry manifest:full-path="outputs/soup/0/1.err"
-		manifest:media-type="application/vnd.taverna.error-document+xml" manifest:size="5331" />		
-	<manifest:file-entry manifest:full-path="outputs/soup/1" />
-	<manifest:file-entry manifest:full-path="outputs/soup/2.err"
-		manifest:media-type="application/vnd.taverna.error-document+xml" manifest:size="3125" />
-		
-	<manifest:file-entry manifest:full-path="outputs/results"
-		manifest:media-type="application/octet-stream" manifest:size="311" />
-
-	<manifest:file-entry manifest:full-path="inputs.rdf"
-		manifest:media-type="application/rdf+xml" />		
-	<manifest:file-entry manifest:full-path="inputs" />
-	<!-- ... -->		
-		
-</manifest:manifest>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/inputs.rdf
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/inputs.rdf b/taverna-scufl2-usecases/src/main/resources/sample-output/inputs.rdf
deleted file mode 100644
index 9a0dd01..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/inputs.rdf
+++ /dev/null
@@ -1,37 +0,0 @@
-<?xml version='1.0'?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-
-<!-- Processed by Id: cwm.py,v 1.197 2007/12/13 15:38:39 syosi Exp -->
-<!--     using base file:///home/stain/stuff/src/workspace/scufl2/scufl2-usecases/src/main/resources/sample-output/inputs.ttl-->
-
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/data/"
-    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
-    <bundle rdf:about="./">
-        <contains rdf:resource="outputs/"/>
-    </bundle>
-
-    <workflowInputs rdf:about="inputs/">
-    </workflowInputs>
-</rdf:RDF>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/inputs.ttl
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/inputs.ttl b/taverna-scufl2-usecases/src/main/resources/sample-output/inputs.ttl
deleted file mode 100644
index 4ee6024..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/inputs.ttl
+++ /dev/null
@@ -1,12 +0,0 @@
-@prefix : <http://ns.taverna.org.uk/2010/data/> .
-@prefix list: <http://ns.taverna.org.uk/2010/data/list/> .
-@prefix error: <http://ns.taverna.org.uk/2010/data/error/> .
-@prefix value: <http://ns.taverna.org.uk/2010/data/value/> .
-@prefix run: <http://ns.taverna.org.uk/2010/run/> .
-
-<.>     a :bundle;
-     :contains <outputs/>.
-
-<inputs/>  a :workflowInputs.
-
-

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/mimetype
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/mimetype b/taverna-scufl2-usecases/src/main/resources/sample-output/mimetype
deleted file mode 100644
index 08b7605..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/mimetype
+++ /dev/null
@@ -1 +0,0 @@
-application/vnd.taverna.data-bundle
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.rdf
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.rdf b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.rdf
deleted file mode 100644
index bf9acf8..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.rdf
+++ /dev/null
@@ -1,107 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/data/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
-	xmlns:scufl2="http://ns.taverna.org.uk/2010/scufl2#">
-	<workflowOutputs rdf:about="outputs/">
-		<contains>
-			<!-- A single value -->
-			<value rdf:about="outputs/results" xlink:href="outputs/results">
-				<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput" />
-				<!-- We know the port name, but not the URI, as we would have to inspect 
-					the .t2flow to find the workflow identifier -->
-				<outputFrom scufl2:name="results" />
-			</value>
-		</contains>
-
-		<contains>
-			<list rdf:about="outputs/fish" xlink:href="outputs/fish">
-				<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput" />
-				<listContent rdf:parseType="Collection">
-					<absent index="0" /> <!-- missing item in position 0 -->
-					<absent index="1" /> <!-- .. 1 -->
-					<value rdf:about="outputs/fish/2" index="2" size="12" />
-					<value rdf:about="outputs/fish/3" index="3" size="442" />
-					<!-- There could be more missing items, but we wouldn't know at this 
-						time -->
-				</listContent>
-				<outputFrom scufl2:name="fish" />
-			</list>
-		</contains>
-
-		<contains>
-			<list rdf:about="outputs/soup/">
-				<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput" />
-				<!-- <depth> is not included, as the server can't accurately calculate 
-					this if the workflow port only have errors or empty lists (ie. folders) - 
-					neither currently annotated with the depth. -->
-				<listContent rdf:parseType="Collection">
-					<!-- List of list of values (depth 2) -->
-
-					<list rdf:about="outputs/soup/0/" xlink:href="outputs/soup/0/" >
-						<listContent rdf:parseType="Collection">
-						
-							<data rdf:about="outputs/soup/0/0" xlink:href="outputs/soup/0/0" 
-							size="12" index="0" />
-							
-							<value index="1">skdjfksjdf</value>
-						
-							
-							<data rdf:about="outputs/soup/0/0" xlink:href="outputs/soup/0/0" 
-							size="12" index="0">
-								<stringValue>243dfsdf</stringValue>
-							</data>
-							
-							
-							<data rdf:about="outputs/soup/0/0" xlink:href="outputs/soup/0/0" 
-							size="12" index="0">
-								<stringValue><!-CDATACRAP[[243dfsdf>.,
-								]]></stringValue>
-							</data>
-							
-							<data rdf:about="outputs/soup/0/0" xlink:href="outputs/soup/0/0" 
-							size="12" index="0">
-								<binary>2BASE7</binary>
-							</data>
-							
-							
-							<!-- We didn't include the error message, but as file name ends in 
-								.err we can at least tag the item as an error -->
-							<error rdf:about="outputs/soup/0/1.err" size="523" />
-						</listContent>
-					</list>
-
-					<!-- Lists could be missing as well -->
-					<absent />
-
-					<list rdf:about="outputs/soup/2/">
-						<!-- empty list -->
-						<listContent rdf:parseType="Collection" />
-					</list>
-
-					<error rdf:about="outputs/soup/3.err" />
-				</listContent>
-				<outputFrom scufl2:name="soup" />
-			</list>
-		</contains>
-	</workflowOutputs>
-</rdf:RDF>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.ttl
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.ttl b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.ttl
deleted file mode 100644
index 167cdda..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.ttl
+++ /dev/null
@@ -1,62 +0,0 @@
-#Processed by Id: cwm.py,v 1.197 2007/12/13 15:38:39 syosi Exp 
-        #    using base file:///home/stain/stuff/src/workspace/uk.org.taverna.scufl2/scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.rdf
-        
-#  Notation3 generation by
-#       notation3.py,v 1.200 2007/12/11 21:18:08 syosi Exp
-
-#   Base was: file:///home/stain/stuff/src/workspace/uk.org.taverna.scufl2/scufl2-usecases/src/main/resources/sample-output/outputs-nested-tiny.rdf
-     @prefix : <http://ns.taverna.org.uk/2010/scufl2#> .
-    @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-    
-    <outputs/>     a <http://ns.taverna.org.uk/2010/data/workflowOutputs>;
-         <http://ns.taverna.org.uk/2010/data/contains> <outputs/fish>,
-                <outputs/results>,
-                <outputs/soup/> .
-    
-    <outputs/fish>     a <http://ns.taverna.org.uk/2010/data/list>,
-                <http://ns.taverna.org.uk/2010/data/workflowOutput>;
-         <http://ns.taverna.org.uk/2010/data/listContent>  (
-         [
-                 a <http://ns.taverna.org.uk/2010/data/missing> ]
-         [
-                 a <http://ns.taverna.org.uk/2010/data/missing> ]
-        <outputs/fish/2>
-        <outputs/fish/3> );
-         <http://ns.taverna.org.uk/2010/data/outputFrom>  [
-             :name "fish" ] .
-    
-    <outputs/fish/2>     a <http://ns.taverna.org.uk/2010/data/value> .
-    
-    <outputs/fish/3>     a <http://ns.taverna.org.uk/2010/data/value> .
-    
-    <outputs/results>     a <http://ns.taverna.org.uk/2010/data/value>,
-                <http://ns.taverna.org.uk/2010/data/workflowOutput>;
-         <http://ns.taverna.org.uk/2010/data/outputFrom>  [
-             :name "results" ] .
-    
-    <outputs/soup/>     a <http://ns.taverna.org.uk/2010/data/list>,
-                <http://ns.taverna.org.uk/2010/data/workflowOutput>;
-         <http://ns.taverna.org.uk/2010/data/listContent>  (
-        <outputs/soup/0/>
-         [
-                 a <http://ns.taverna.org.uk/2010/data/missing> ]
-        <outputs/soup/2/>
-        <outputs/soup/3.err> );
-         <http://ns.taverna.org.uk/2010/data/outputFrom>  [
-             :name "soup" ] .
-    
-    <outputs/soup/0/>     a <http://ns.taverna.org.uk/2010/data/list>;
-         <http://ns.taverna.org.uk/2010/data/listContent>  (
-        <outputs/soup/0/0>
-        <outputs/soup/0/1.err> ) .
-    
-    <outputs/soup/0/0>     a <http://ns.taverna.org.uk/2010/data/value> .
-    
-    <outputs/soup/0/1.err>     a <http://ns.taverna.org.uk/2010/data/error> .
-    
-    <outputs/soup/2/>     a <http://ns.taverna.org.uk/2010/data/list>;
-         rdf:rest () .
-    
-    <outputs/soup/3.err>     a <http://ns.taverna.org.uk/2010/data/error> .
-    
-#ENDS

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested.rdf
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested.rdf b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested.rdf
deleted file mode 100644
index 1f3facc..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested.rdf
+++ /dev/null
@@ -1,124 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/data/" xmlns:owl="http://www.w3.org/2002/07/owl#"
-	xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:run="http://ns.taverna.org.uk/2010/run/">
-
-	<bundle rdf:about="./">
-		<contains rdf:resource="outputs/" />
-		<owl:sameAs
-			rdf:resource="http://ns.taverna.org.uk/2010/data/bundle/1495ca3a-f61a-437b-83ad-c6437c92a3d0/" />
-	</bundle>
-
-	<workflowOutputs rdf:about="outputs/">
-		<contains>
-			<list rdf:about="outputs/fish">
-				<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput" />
-				<depth>1</depth>
-				<listContent rdf:parseType="Collection">
-					<missingValue />
-					<missingValue />
-					<value rdf:about="outputs/fish/2.txt">
-						<owl:sameAs
-							rdf:resource="http://ns.taverna.org.uk/2010/data/value/45b29774-8927-4e9e-8961-6137cb95ef69" />
-					</value>
-					<value rdf:about="outputs/fish/3.uri">
-						<uri rdf:resource="http://www.example.org/data4.txt" />
-						<owl:sameAs
-							rdf:resource="http://ns.taverna.org.uk/2010/data/value/59f606c9-713a-40dc-905e-56b6764e1338" />
-					</value>
-					<missingValue />
-				</listContent>
-				<outputFrom
-					rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/fish" />
-				<producedBy
-					rdf:resource="http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7" />
-				<owl:sameAs
-					rdf:resource="http://ns.taverna.org.uk/2010/data/list/45b29774-8927-4e9e-8961-6137cb95ef69" />
-			</list>
-		</contains>
-		<contains>
-			<value rdf:about="outputs/results">
-				<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput" />
-				<outputFrom
-					rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/results" />
-				<producedBy
-					rdf:resource="http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7" />
-				<owl:sameAs
-					rdf:resource="http://ns.taverna.org.uk/2010/data/value/3d0a18ad-ad01-4576-ab9c-616ced7d90d2" />
-			</value>
-
-		</contains>
-		<contains>
-			<list rdf:about="outputs/soup/">
-				<rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput" />
-				<depth>2</depth>
-				<listContent rdf:parseType="Collection">
-					<list rdf:about="outputs/soup/0/">
-						<depth>1</depth>
-						<listContent rdf:parseType="Collection">
-							<value rdf:about="outputs/soup/0/0.jpg">
-								<owl:sameAs
-									rdf:resource="http://ns.taverna.org.uk/2010/data/value/d433895f-5550-4d9e-9f65-ed30b5272047" />
-							</value>
-
-							<error rdf:about="outputs/soup/0/1.err">
-								<depth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</depth>
-								<owl:sameAs
-									rdf:resource="http://ns.taverna.org.uk/2010/data/value/f719b95f-5eea-4609-9c6d-c71aab75b4da" />
-							</error>
-
-						</listContent>
-
-						<owl:sameAs
-							rdf:resource="http://ns.taverna.org.uk/2010/data/list/d433895f-5550-4d9e-9f65-ed30b5272047" />
-					</list>
-
-
-					<list rdf:about="outputs/soup/1/">
-						<depth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</depth>
-						<owl:sameAs
-							rdf:resource="http://ns.taverna.org.uk/2010/data/list/d433895f-5550-4d9e-9f65-ed30b5272047" />
-					</list>
-
-					<error rdf:about="outputs/soup/2.err">
-						<depth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</depth>
-						<owl:sameAs
-							rdf:resource="http://ns.taverna.org.uk/2010/data/error/b7a07d2f-93f6-4fef-b6d4-4a68f2d6dd0b" />
-					</error>
-				</listContent>
-				<outputFrom
-					rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/soup" />
-				<producedBy
-					rdf:resource="http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7" />
-				<owl:sameAs
-					rdf:resource="http://ns.taverna.org.uk/2010/data/list/b7e6bae6-7f09-405c-b19a-604ec36d95ca" />
-			</list>
-		</contains>
-	</workflowOutputs>
-
-	<run:workflowRun
-		rdf:about="http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7">
-		<run:runOf
-			rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/" />
-	</run:workflowRun>
-</rdf:RDF>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested.ttl
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested.ttl b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested.ttl
deleted file mode 100644
index 6e6a90d..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs-nested.ttl
+++ /dev/null
@@ -1,83 +0,0 @@
-#Processed by Id: cwm.py,v 1.197 2007/12/13 15:38:39 syosi Exp 
-        #    using base file:///home/stain/stuff/src/workspace/uk.org.taverna.scufl2/scufl2-usecases/src/main/resources/sample-output/outputs-nested.rdf
-        
-#  Notation3 generation by
-#       notation3.py,v 1.200 2007/12/11 21:18:08 syosi Exp
-
-#   Base was: file:///home/stain/stuff/src/workspace/uk.org.taverna.scufl2/scufl2-usecases/src/main/resources/sample-output/outputs-nested.rdf
-    
-    <./>     a <http://ns.taverna.org.uk/2010/data/bundle>;
-         <http://ns.taverna.org.uk/2010/data/contains> <outputs/>;
-         = <http://ns.taverna.org.uk/2010/data/bundle/1495ca3a-f61a-437b-83ad-c6437c92a3d0/> .
-    
-    <outputs/>     a <http://ns.taverna.org.uk/2010/data/workflowOutputs>;
-         <http://ns.taverna.org.uk/2010/data/contains> <outputs/fish>,
-                <outputs/results>,
-                <outputs/soup/> .
-    
-    <outputs/fish>     a <http://ns.taverna.org.uk/2010/data/list>,
-                <http://ns.taverna.org.uk/2010/data/workflowOutput>;
-         <http://ns.taverna.org.uk/2010/data/depth> "1";
-         <http://ns.taverna.org.uk/2010/data/listContent>  (
-         [
-                 a <http://ns.taverna.org.uk/2010/data/missingValue> ]
-         [
-                 a <http://ns.taverna.org.uk/2010/data/missingValue> ]
-        <outputs/fish/2.txt>
-        <outputs/fish/3.uri>
-         [
-                 a <http://ns.taverna.org.uk/2010/data/missingValue> ] );
-         <http://ns.taverna.org.uk/2010/data/outputFrom> <http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/fish>;
-         <http://ns.taverna.org.uk/2010/data/producedBy> <http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7>;
-         = <http://ns.taverna.org.uk/2010/data/list/45b29774-8927-4e9e-8961-6137cb95ef69> .
-    
-    <outputs/fish/2.txt>     a <http://ns.taverna.org.uk/2010/data/value>;
-         = <http://ns.taverna.org.uk/2010/data/value/45b29774-8927-4e9e-8961-6137cb95ef69> .
-    
-    <outputs/fish/3.uri>     a <http://ns.taverna.org.uk/2010/data/value>;
-         <http://ns.taverna.org.uk/2010/data/uri> <http://www.example.org/data4.txt>;
-         = <http://ns.taverna.org.uk/2010/data/value/59f606c9-713a-40dc-905e-56b6764e1338> .
-    
-    <outputs/results>     a <http://ns.taverna.org.uk/2010/data/value>,
-                <http://ns.taverna.org.uk/2010/data/workflowOutput>;
-         <http://ns.taverna.org.uk/2010/data/outputFrom> <http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/results>;
-         <http://ns.taverna.org.uk/2010/data/producedBy> <http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7>;
-         = <http://ns.taverna.org.uk/2010/data/value/3d0a18ad-ad01-4576-ab9c-616ced7d90d2> .
-    
-    <outputs/soup/>     a <http://ns.taverna.org.uk/2010/data/list>,
-                <http://ns.taverna.org.uk/2010/data/workflowOutput>;
-         <http://ns.taverna.org.uk/2010/data/depth> "2";
-         <http://ns.taverna.org.uk/2010/data/listContent>  (
-        <outputs/soup/0/>
-        <outputs/soup/1/>
-        <outputs/soup/2.err> );
-         <http://ns.taverna.org.uk/2010/data/outputFrom> <http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/soup>;
-         <http://ns.taverna.org.uk/2010/data/producedBy> <http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7>;
-         = <http://ns.taverna.org.uk/2010/data/list/b7e6bae6-7f09-405c-b19a-604ec36d95ca> .
-    
-    <outputs/soup/0/>     a <http://ns.taverna.org.uk/2010/data/list>;
-         <http://ns.taverna.org.uk/2010/data/depth> "1";
-         <http://ns.taverna.org.uk/2010/data/listContent>  (
-        <outputs/soup/0/0.jpg>
-        <outputs/soup/0/1.err> );
-         = <http://ns.taverna.org.uk/2010/data/list/d433895f-5550-4d9e-9f65-ed30b5272047> .
-    
-    <outputs/soup/0/0.jpg>     a <http://ns.taverna.org.uk/2010/data/value>;
-         = <http://ns.taverna.org.uk/2010/data/value/d433895f-5550-4d9e-9f65-ed30b5272047> .
-    
-    <outputs/soup/0/1.err>     a <http://ns.taverna.org.uk/2010/data/error>;
-         <http://ns.taverna.org.uk/2010/data/depth> 0;
-         = <http://ns.taverna.org.uk/2010/data/value/f719b95f-5eea-4609-9c6d-c71aab75b4da> .
-    
-    <outputs/soup/1/>     a <http://ns.taverna.org.uk/2010/data/list>;
-         <http://ns.taverna.org.uk/2010/data/depth> 1;
-         = <http://ns.taverna.org.uk/2010/data/list/d433895f-5550-4d9e-9f65-ed30b5272047> .
-    
-    <outputs/soup/2.err>     a <http://ns.taverna.org.uk/2010/data/error>;
-         <http://ns.taverna.org.uk/2010/data/depth> 1;
-         = <http://ns.taverna.org.uk/2010/data/error/b7a07d2f-93f6-4fef-b6d4-4a68f2d6dd0b> .
-    
-    <http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7>     a <http://ns.taverna.org.uk/2010/run/workflowRun>;
-         <http://ns.taverna.org.uk/2010/run/runOf> <http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/> .
-    
-#ENDS

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs.rdf
----------------------------------------------------------------------
diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs.rdf b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs.rdf
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index f11bb56..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs.rdf
+++ /dev/null
@@ -1,131 +0,0 @@
-<?xml version='1.0'?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements.  See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership.  The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License.  You may obtain a copy of the License at
-
-   http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied.  See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-
-
-<!-- Processed by Id: cwm.py,v 1.197 2007/12/13 15:38:39 syosi Exp -->
-<!--     using base file:///home/stain/stuff/src/workspace/scufl2/scufl2-usecases/src/main/resources/sample-output/outputs.ttl-->
-
-
-<rdf:RDF xmlns="http://ns.taverna.org.uk/2010/data/"
-    xmlns:owl="http://www.w3.org/2002/07/owl#"
-    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
-    xmlns:run="http://ns.taverna.org.uk/2010/run/">
-
-    <bundle rdf:about="./">
-        <contains rdf:resource="outputs/"/>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/bundle/1495ca3a-f61a-437b-83ad-c6437c92a3d0/"/>
-    </bundle>
-
-    <workflowOutputs rdf:about="outputs/">
-        <contains rdf:resource="outputs/fish/"/>
-        <contains rdf:resource="outputs/results"/>
-        <contains rdf:resource="outputs/soup/"/>
-    </workflowOutputs>
-
-    <list rdf:about="outputs/fish/">
-        <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput"/>
-        <depth>1</depth>
-        <hasListEntry rdf:parseType="Resource">
-            <entry rdf:resource="outputs/fish/0.txt"/>
-            <listPosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</listPosition>
-        </hasListEntry>
-        <hasListEntry rdf:parseType="Resource">
-            <entry rdf:resource="outputs/fish/1.uri"/>
-            <listPosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</listPosition>
-        </hasListEntry>
-        <outputFrom rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/fish"/>
-        <producedBy rdf:resource="http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7"/>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/list/45b29774-8927-4e9e-8961-6137cb95ef69"/>
-    </list>
-
-    <value rdf:about="outputs/fish/0.txt">
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/value/45b29774-8927-4e9e-8961-6137cb95ef69"/>
-    </value>
-
-    <value rdf:about="outputs/fish/1.uri">
-        <uri rdf:resource="http://www.example.org/data4.txt"/>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/value/59f606c9-713a-40dc-905e-56b6764e1338"/>
-    </value>
-
-    <value rdf:about="outputs/results">
-        <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput"/>
-        <outputFrom rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/results"/>
-        <producedBy rdf:resource="http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7"/>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/value/3d0a18ad-ad01-4576-ab9c-616ced7d90d2"/>
-    </value>
-
-    <list rdf:about="outputs/soup/">
-        <rdf:type rdf:resource="http://ns.taverna.org.uk/2010/data/workflowOutput"/>
-        <depth>2</depth>
-        <hasListEntry rdf:parseType="Resource">
-            <entry rdf:resource="outputs/soup/0/"/>
-            <listPosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</listPosition>
-        </hasListEntry>
-        <hasListEntry rdf:parseType="Resource">
-            <entry rdf:resource="outputs/soup/1/"/>
-            <listPosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</listPosition>
-        </hasListEntry>
-        <hasListEntry rdf:parseType="Resource">
-            <entry rdf:resource="outputs/soup/2.err"/>
-            <listPosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">2</listPosition>
-        </hasListEntry>
-        <outputFrom rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/soup"/>
-        <producedBy rdf:resource="http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7"/>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/list/b7e6bae6-7f09-405c-b19a-604ec36d95ca"/>
-    </list>
-
-    <list rdf:about="outputs/soup/0/">
-        <depth>1</depth>
-        <hasListEntry rdf:parseType="Resource">
-            <entry rdf:resource="outputs/soup/0/0.jpg"/>
-            <listPosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</listPosition>
-        </hasListEntry>
-        <hasListEntry rdf:parseType="Resource">
-            <entry rdf:resource="outputs/soup/0/1.err"/>
-            <listPosition rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</listPosition>
-        </hasListEntry>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/list/d433895f-5550-4d9e-9f65-ed30b5272047"/>
-    </list>
-
-    <value rdf:about="outputs/soup/0/0.jpg">
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/value/d433895f-5550-4d9e-9f65-ed30b5272047"/>
-    </value>
-
-    <error rdf:about="outputs/soup/0/1.err">
-        <depth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">0</depth>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/value/f719b95f-5eea-4609-9c6d-c71aab75b4da"/>
-    </error>
-
-    <list rdf:about="outputs/soup/1/">
-        <depth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</depth>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/list/d433895f-5550-4d9e-9f65-ed30b5272047"/>
-    </list>
-
-    <error rdf:about="outputs/soup/2.err">
-        <depth rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</depth>
-        <owl:sameAs rdf:resource="http://ns.taverna.org.uk/2010/data/error/b7a07d2f-93f6-4fef-b6d4-4a68f2d6dd0b"/>
-    </error>
-
-    <run:workflowRun rdf:about="http://ns.taverna.org.uk/2010/run/b9455363-5624-4744-901b-3d6c7ec273d7">
-        <run:runOf rdf:resource="http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/"/>
-    </run:workflowRun>
-</rdf:RDF>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs.ttl
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diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs.ttl b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs.ttl
deleted file mode 100644
index 8389846..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs.ttl
+++ /dev/null
@@ -1,86 +0,0 @@
-@prefix : <http://ns.taverna.org.uk/2010/data/> .
-@prefix list: <http://ns.taverna.org.uk/2010/data/list/> .
-@prefix error: <http://ns.taverna.org.uk/2010/data/error/> .
-@prefix value: <http://ns.taverna.org.uk/2010/data/value/> .
-@prefix run: <http://ns.taverna.org.uk/2010/run/> .
-
-<.>     a :bundle;
-     :contains <outputs/>;
-     = <http://ns.taverna.org.uk/2010/data/bundle/1495ca3a-f61a-437b-83ad-c6437c92a3d0/> .
-
-<outputs/>  a :workflowOutputs;
-     :contains <outputs/fish/>,
-            <outputs/results>,
-            <outputs/soup/> .
-            
-
-<outputs/fish/>     a :list, :workflowOutput;
-     = list:45b29774-8927-4e9e-8961-6137cb95ef69 ;
-     :depth "1";
-     :hasListEntry  [
-         :entry <outputs/fish/0.txt>;
-         :listPosition 0 ], 
-         [ 
-         :entry <outputs/fish/1.uri>;
-         :listPosition 1 ];
-     :producedBy run:b9455363-5624-4744-901b-3d6c7ec273d7;
-     :outputFrom <http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/fish> .
-
-<outputs/fish/0.txt>     a :value;
-     = <http://ns.taverna.org.uk/2010/data/value/45b29774-8927-4e9e-8961-6137cb95ef69> .
-
-<outputs/fish/1.uri>     a :value;
-     = <http://ns.taverna.org.uk/2010/data/value/59f606c9-713a-40dc-905e-56b6764e1338> ;
-     :uri <http://www.example.org/data4.txt> .
-
-<outputs/soup/>     a :list, :workflowOutput;
-     = list:b7e6bae6-7f09-405c-b19a-604ec36d95ca ;
-     :depth "2";
-     :hasListEntry  [
-         :entry <outputs/soup/0/>;
-         :listPosition 0 ],
-         [
-         :entry <outputs/soup/1/>;
-         :listPosition 1 ],
-         [
-         :entry <outputs/soup/2.err>;
-         :listPosition 2 ];
-     :producedBy run:b9455363-5624-4744-901b-3d6c7ec273d7;
-     :outputFrom <http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/soup> .
-
-run:b9455363-5624-4744-901b-3d6c7ec273d7 a run:workflowRun; 
-	run:runOf <http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/> .
-
-<outputs/soup/0/>     a :list;
-     = list:d433895f-5550-4d9e-9f65-ed30b5272047 ;
-     :depth "1";
-     :hasListEntry  [
-         :entry <outputs/soup/0/0.jpg>;
-         :listPosition 0 ],
-             [
-         :entry <outputs/soup/0/1.err>;
-         :listPosition 1 ].
-
-<outputs/soup/0/0.jpg>     a :value;
-     = value:d433895f-5550-4d9e-9f65-ed30b5272047 .
-
-<outputs/soup/0/1.err>     a :error;
-     = value:f719b95f-5eea-4609-9c6d-c71aab75b4da ;
-     :depth 0 .
-
-<outputs/soup/1/>     a :list;
-     = list:d433895f-5550-4d9e-9f65-ed30b5272047 ;
-     :depth 1 .
-
-<outputs/soup/2.err>     a :error;
-     = error:b7a07d2f-93f6-4fef-b6d4-4a68f2d6dd0b ;
-     :depth 1 .
-
-
-<outputs/results>     a :value, :workflowOutput;
-     = <http://ns.taverna.org.uk/2010/data/value/3d0a18ad-ad01-4576-ab9c-616ced7d90d2> ;
-     :outputFrom <http://ns.taverna.org.uk/2010/workflowBundle/00626652-55ae-4a9e-80d4-c8e9ac84e2ca/workflow/HelloWorld/out/results> ;
-     :producedBy run:b9455363-5624-4744-901b-3d6c7ec273d7 .
-     
-
-

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/fish/0
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diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/fish/0 b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/fish/0
deleted file mode 100644
index 948749d..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/fish/0
+++ /dev/null
@@ -1 +0,0 @@
-fish 0
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/fish/1
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diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/fish/1 b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/fish/1
deleted file mode 100644
index f972d16..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/fish/1
+++ /dev/null
@@ -1 +0,0 @@
-fish 1
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/results
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diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/results b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/results
deleted file mode 100644
index 872aa27..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/results
+++ /dev/null
@@ -1 +0,0 @@
-results
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/soup/0/0
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diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/soup/0/0 b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/soup/0/0
deleted file mode 100644
index 0842743..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/soup/0/0
+++ /dev/null
@@ -1 +0,0 @@
-soup 0.0

http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/cfd67b7a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/soup/0/1
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diff --git a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/soup/0/1 b/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/soup/0/1
deleted file mode 100644
index 90d4c51..0000000
--- a/taverna-scufl2-usecases/src/main/resources/sample-output/outputs/soup/0/1
+++ /dev/null
@@ -1 +0,0 @@
-soup 0.1