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Posted to commits@ctakes.apache.org by ja...@apache.org on 2013/11/14 20:57:47 UTC
svn commit: r1542043 [3/3] - in /ctakes/branches/ctakes-3.1.1: ./
ctakes-assertion-res/ ctakes-assertion-zoner-res/ ctakes-assertion-zoner/
ctakes-assertion/ ctakes-chunker-res/ ctakes-chunker/
ctakes-clinical-pipeline/ ctakes-constituency-parser-res/ ...
Modified: ctakes/branches/ctakes-3.1.1/ctakes-type-system/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-type-system/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-type-system/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-type-system/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,63 +1,63 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <modelVersion>4.0.0</modelVersion>
- <artifactId>ctakes-type-system</artifactId>
- <name>Apache cTAKES common type system</name>
- <description>Defines the cTAKES type system UIMA annotation classes.</description>
- <parent>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes</artifactId>
- <version>3.2.0-SNAPSHOT</version>
- </parent>
- <dependencies>
- <dependency>
- <groupId>org.apache.uima</groupId>
- <artifactId>uimaj-core</artifactId>
- </dependency>
- <dependency>
- <groupId>org.uimafit</groupId>
- <artifactId>uimafit</artifactId>
- </dependency>
- <dependency>
- <groupId>tw.edu.ntu.csie</groupId>
- <artifactId>libsvm</artifactId>
- </dependency>
- <dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <scope>test</scope>
- </dependency>
- </dependencies>
-
- <build>
- <plugins>
- <plugin>
- <groupId>org.cleartk</groupId>
- <artifactId>jcasgen-maven-plugin</artifactId>
- <configuration>
- <typeSystem>src/main/resources/org/apache/ctakes/typesystem/types/TypeSystem.xml</typeSystem>
- </configuration>
- </plugin>
- </plugins>
- </build>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+ <artifactId>ctakes-type-system</artifactId>
+ <name>Apache cTAKES common type system</name>
+ <description>Defines the cTAKES type system UIMA annotation classes.</description>
+ <parent>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes</artifactId>
+ <version>3.1.1</version>
+ </parent>
+ <dependencies>
+ <dependency>
+ <groupId>org.apache.uima</groupId>
+ <artifactId>uimaj-core</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.uimafit</groupId>
+ <artifactId>uimafit</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>tw.edu.ntu.csie</groupId>
+ <artifactId>libsvm</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <scope>test</scope>
+ </dependency>
+ </dependencies>
+
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.cleartk</groupId>
+ <artifactId>jcasgen-maven-plugin</artifactId>
+ <configuration>
+ <typeSystem>src/main/resources/org/apache/ctakes/typesystem/types/TypeSystem.xml</typeSystem>
+ </configuration>
+ </plugin>
+ </plugins>
+ </build>
+</project>
Modified: ctakes/branches/ctakes-3.1.1/ctakes-utils/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/ctakes-utils/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/ctakes-utils/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/ctakes-utils/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,62 +1,62 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <modelVersion>4.0.0</modelVersion>
- <artifactId>ctakes-utils</artifactId>
- <name>Apache cTAKES utils</name>
- <parent>
- <artifactId>ctakes</artifactId>
- <groupId>org.apache.ctakes</groupId>
- <version>3.2.0-SNAPSHOT</version>
- </parent>
- <dependencies>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-type-system</artifactId>
- </dependency>
- <dependency>
- <groupId>log4j</groupId>
- <artifactId>log4j</artifactId>
- </dependency>
- <dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <scope>compile</scope>
- </dependency>
- <dependency>
- <groupId>org.apache.lucene</groupId>
- <artifactId>lucene-core</artifactId>
- </dependency>
- <dependency>
- <groupId>org.apache.lucene</groupId>
- <artifactId>lucene-queries</artifactId>
- </dependency>
- <dependency>
- <groupId>org.apache.lucene</groupId>
- <artifactId>lucene-queryparser</artifactId>
- </dependency>
- <dependency>
- <groupId>org.apache.lucene</groupId>
- <artifactId>lucene-analyzers-common</artifactId>
- </dependency>
- </dependencies>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+ <artifactId>ctakes-utils</artifactId>
+ <name>Apache cTAKES utils</name>
+ <parent>
+ <artifactId>ctakes</artifactId>
+ <groupId>org.apache.ctakes</groupId>
+ <version>3.1.1</version>
+ </parent>
+ <dependencies>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-type-system</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>log4j</groupId>
+ <artifactId>log4j</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <scope>compile</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-core</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-queries</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-queryparser</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-analyzers-common</artifactId>
+ </dependency>
+ </dependencies>
+</project>
Modified: ctakes/branches/ctakes-3.1.1/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/branches/ctakes-3.1.1/pom.xml?rev=1542043&r1=1542042&r2=1542043&view=diff
==============================================================================
--- ctakes/branches/ctakes-3.1.1/pom.xml (original)
+++ ctakes/branches/ctakes-3.1.1/pom.xml Thu Nov 14 19:57:46 2013
@@ -1,831 +1,831 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-
- <modelVersion>4.0.0</modelVersion>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes</artifactId>
- <version>3.2.0-SNAPSHOT</version>
- <packaging>pom</packaging>
- <name>Apache cTAKES</name>
- <url>http://ctakes.apache.org</url>
- <inceptionYear>2012</inceptionYear>
- <scm>
- <!-- In child modules, Maven will append ${artifactId} to the following
- URLs -->
- <connection>scm:svn:https://svn.apache.org/repos/asf/ctakes/trunk</connection>
- <developerConnection>scm:svn:https://svn.apache.org/repos/asf/ctakes/trunk</developerConnection>
- <url>https://svn.apache.org/repos/asf/ctakes/trunk</url>
- </scm>
- <issueManagement>
- <system>jira</system>
- <url>https://issues.apache.org/jira/browse/ctakes</url>
- </issueManagement>
- <ciManagement>
- <system>jenkins</system>
- <url>https://builds.apache.org/job/ctakes-trunk/</url>
- </ciManagement>
- <mailingLists>
- <mailingList>
- <name>Apache cTAKES Users</name>
- <subscribe>user-subscribe@ctakes.apache.org</subscribe>
- <unsubscribe>user-unsubscribe@ctakes.apache.org</unsubscribe>
- <post>user@ctakes.apache.org</post>
- <archive>http://mail-archives.apache.org/mod_mbox/ctakes-user/</archive>
- </mailingList>
-
- <mailingList>
- <name>Apache cTAKES Developers</name>
- <subscribe>dev-subscribe@ctakes.apache.org</subscribe>
- <unsubscribe>dev-unsubscribe@ctakes.apache.org</unsubscribe>
- <post>dev@ctakes.apache.org</post>
- <archive>http://mail-archives.apache.org/mod_mbox/ctakes-dev/</archive>
- </mailingList>
-
- <mailingList>
- <name>Apache cTAKES Commits</name>
- <subscribe>commits-subscribe@ctakes.apache.org</subscribe>
- <unsubscribe>commits-unsubscribe@ctakes.apache.org</unsubscribe>
- <archive>http://mail-archives.apache.org/mod_mbox/ctakes-commits/</archive>
- </mailingList>
-
- <mailingList>
- <name>Apache cTAKES Notifications</name>
- <subscribe>notifications-subscribe@ctakes.apache.org</subscribe>
- <unsubscribe>notifications-unsubscribe@ctakes.apache.org</unsubscribe>
- <archive>http://mail-archives.apache.org/mod_mbox/ctakes-notifications/</archive>
- </mailingList>
- </mailingLists>
- <properties>
- <ctakes.version>3.2.0-SNAPSHOT</ctakes.version>
- <maven.compiler.source>1.6</maven.compiler.source>
- <maven.compiler.target>1.6</maven.compiler.target>
- <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
- </properties>
-
- <parent>
- <groupId>org.apache</groupId>
- <artifactId>apache</artifactId>
- <version>13</version>
- </parent>
-
- <modules>
- <module>ctakes-utils</module>
- <module>ctakes-core</module>
- <module>ctakes-type-system</module>
- <module>ctakes-pos-tagger</module>
- <module>ctakes-chunker</module>
- <module>ctakes-preprocessor</module>
- <module>ctakes-dictionary-lookup</module>
- <module>ctakes-context-tokenizer</module>
- <module>ctakes-lvg</module>
- <module>ctakes-ne-contexts</module>
- <module>ctakes-constituency-parser</module>
- <module>ctakes-coreference</module>
- <module>ctakes-drug-ner</module>
- <module>ctakes-side-effect</module>
- <module>ctakes-smoking-status</module>
- <module>ctakes-dependency-parser</module>
- <module>ctakes-relation-extractor</module>
- <module>ctakes-pad-term-spotter</module>
- <module>ctakes-assertion</module>
- <module>ctakes-assertion-zoner</module>
- <module>ctakes-temporal</module>
- <module>ctakes-clinical-pipeline</module>
- <module>ctakes-distribution</module>
- <module>ctakes-regression-test</module>
- <module>ctakes-assertion-res</module>
- <module>ctakes-chunker-res</module>
- <module>ctakes-constituency-parser-res</module>
- <module>ctakes-core-res</module>
- <module>ctakes-coreference-res</module>
- <module>ctakes-dependency-parser-res</module>
- <module>ctakes-dictionary-lookup-res</module>
- <module>ctakes-lvg-res</module>
- <module>ctakes-pad-term-spotter-res</module>
- <module>ctakes-pos-tagger-res</module>
- <module>ctakes-relation-extractor-res</module>
- <module>ctakes-side-effect-res</module>
- <module>ctakes-smoking-status-res</module>
- <module>ctakes-temporal-res</module>
- <module>ctakes-assertion-zoner-res</module>
- <module>ctakes-drug-ner-res</module>
- <module>ctakes-ne-contexts-res</module>
- <module>ctakes-template-filler</module>
- <module>ctakes-examples</module>
- </modules>
- <dependencyManagement>
- <dependencies>
- <!-- cTAKES module versions -->
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-type-system</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-utils</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-core</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-core-res</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-dictionary-lookup</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-dictionary-lookup-res</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-preprocessor</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-pos-tagger</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-pos-tagger-res</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-chunker</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-chunker-res</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-lvg</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>ctakes-lvg-res</artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-context-tokenizer
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-clinical-pipeline
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-pad-term-spotter
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-pad-term-spotter-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-ne-contexts
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-ne-contexts-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-assertion
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-assertion-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-assertion-zoner
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-assertion-zoner-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-constituency-parser
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-constituency-parser-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-coreference
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-coreference-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-drug-ner
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-drug-ner-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-side-effect
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-side-effect-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-smoking-status
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-smoking-status-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-dependency-parser
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-dependency-parser-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-relation-extractor
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-relation-extractor-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-temporal
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-temporal-res
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.ctakes</groupId>
- <artifactId>
- ctakes-distribution
- </artifactId>
- <version>${ctakes.version}</version>
- </dependency>
- <!-- cTAKES third party dependency versions -->
- <dependency>
- <groupId>jdom</groupId>
- <artifactId>jdom</artifactId>
- <version>1.0</version>
- </dependency>
- <dependency>
- <groupId>org.jdom</groupId>
- <artifactId>jdom2</artifactId>
- <version>2.0.3</version>
- </dependency>
- <!-- <dependency> <groupId>jama</groupId> <artifactId>jama</artifactId>
- <version>1.0.2</version> </dependency> -->
- <dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <version>[4.10]</version>
- <scope>test</scope>
- </dependency>
- <dependency>
- <groupId>log4j</groupId>
- <artifactId>log4j</artifactId>
- <version>1.2.16</version>
- </dependency>
- <dependency>
- <groupId>org.apache.lucene</groupId>
- <artifactId>lucene-core</artifactId>
- <version>4.0.0</version>
- </dependency>
- <dependency>
- <groupId>org.apache.lucene</groupId>
- <artifactId>lucene-queries</artifactId>
- <version>4.0.0</version>
- </dependency>
- <dependency>
- <groupId>org.apache.lucene</groupId>
- <artifactId>lucene-queryparser</artifactId>
- <version>4.0.0</version>
- </dependency>
- <dependency>
- <groupId>org.apache.lucene</groupId>
- <artifactId>lucene-analyzers-common</artifactId>
- <version>4.0.0</version>
- </dependency>
- <dependency>
- <groupId>org.apache.opennlp</groupId>
- <artifactId>opennlp-maxent</artifactId>
- <version>3.0.2-incubating</version>
- </dependency>
- <dependency>
- <groupId>org.apache.opennlp</groupId>
- <artifactId>opennlp-tools</artifactId>
- <version>1.5.2-incubating</version>
- </dependency>
- <dependency>
- <groupId>org.apache.uima</groupId>
- <artifactId>uimaj-examples</artifactId>
- <version>2.4.0</version>
- </dependency>
- <dependency>
- <groupId>org.apache.uima</groupId>
- <artifactId>uimaj-core</artifactId>
- <version>2.4.0</version>
- </dependency>
- <dependency>
- <groupId>org.uimafit</groupId>
- <artifactId>uimafit</artifactId>
- <version>1.4.0</version>
- <exclusions>
- <exclusion>
- <groupId>commons-io</groupId>
- <artifactId>commons-io</artifactId>
- </exclusion>
- </exclusions>
- </dependency>
- <dependency>
- <groupId>tw.edu.ntu.csie</groupId>
- <artifactId>libsvm</artifactId>
- <version>3.1</version>
- </dependency>
- <dependency>
- <groupId>xerces</groupId>
- <artifactId>xercesImpl</artifactId>
- <version>2.10.0</version>
- </dependency>
- <!-- import a consistent set of versions for all ClearTK modules -->
- <dependency>
- <groupId>org.cleartk</groupId>
- <artifactId>cleartk-release</artifactId>
- <version>1.4.1</version>
- <type>pom</type>
- <scope>import</scope>
- </dependency>
- <dependency>
- <groupId>args4j</groupId>
- <artifactId>args4j</artifactId>
- <version>2.0.16</version>
- </dependency>
- <dependency>
- <groupId>com.lexicalscope.jewelcli</groupId>
- <artifactId>jewelcli</artifactId>
- <version>0.8.3</version>
- </dependency>
- <dependency>
- <groupId>commons-io</groupId>
- <artifactId>commons-io</artifactId>
- <version>2.0.1</version>
- </dependency>
- <dependency>
- <groupId>commons-lang</groupId>
- <artifactId>commons-lang</artifactId>
- <version>2.4</version>
- </dependency>
- <dependency>
- <groupId>commons-cli</groupId>
- <artifactId>commons-cli</artifactId>
- <version>1.2</version>
- </dependency>
- <dependency>
- <groupId>commons-logging</groupId>
- <artifactId>commons-logging</artifactId>
- <version>1.1.1</version>
- </dependency>
- <dependency>
- <groupId>com.google.guava</groupId>
- <artifactId>guava</artifactId>
- <version>10.0</version>
- </dependency>
- <dependency>
- <groupId>com.carrotsearch</groupId>
- <artifactId>hppc</artifactId>
- <version>0.4.1</version>
- </dependency>
- <dependency>
- <groupId>org.springframework</groupId>
- <artifactId>spring-core</artifactId>
- <version>3.1.2.RELEASE</version>
- </dependency>
- <dependency>
- <groupId>edu.mit.findstruct</groupId>
- <artifactId>structmulti</artifactId>
- <version>0.0.1</version>
- </dependency>
- <dependency>
- <groupId>edu.mit.findstruct</groupId>
- <artifactId>findstructapi</artifactId>
- <version>0.0.1</version>
- </dependency>
- <dependency>
- <groupId>com.googlecode.armbrust-file-utils</groupId>
- <artifactId>sqlwrapper</artifactId>
- <version>0.0.1</version>
- </dependency>
- <dependency>
- <groupId>net.sourceforge.openai</groupId>
- <artifactId>openaifsm</artifactId>
- <version>0.0.1</version>
- </dependency>
- <dependency>
- <groupId>gov.nih.nlm.nls.lvg</groupId>
- <artifactId>lvg2010dist</artifactId>
- <version>0.0.1</version>
- </dependency>
- <dependency>
- <groupId>com.googlecode.clearnlp</groupId>
- <artifactId>clearnlp</artifactId>
- <version>1.3.1</version>
- </dependency>
- </dependencies>
- </dependencyManagement>
- <build>
- <!-- It's good practice to explicitly declare versions for all plugins -->
- <pluginManagement>
- <plugins>
-
- <plugin>
- <groupId>org.cleartk</groupId>
- <artifactId>jcasgen-maven-plugin</artifactId>
- <version>0.9.3</version>
- <executions>
- <execution>
- <goals>
- <goal>generate</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
- <plugin>
- <groupId>com.mycila.maven-license-plugin</groupId>
- <artifactId>maven-license-plugin</artifactId>
- <version>1.9.0</version>
- <configuration>
- <header>ctakes-distribution/src/main/config/license_header.txt</header>
- <excludes>
- <!-- We're disabling .txt files for now because some Annotators may
- not be able to handle standard comments in text files. This may break name
- values pairs such as stopWords.txt -->
- <exclude>**.txt</exclude>
- </excludes>
- <useDefaultMapping>false</useDefaultMapping>
- <quiet>false</quiet>
- <failIfMissing>false</failIfMissing>
- <mapping>
- <java>JAVADOC_STYLE</java>
- <groovy>JAVADOC_STYLE</groovy>
- <js>JAVADOC_STYLE</js>
- <css>JAVADOC_STYLE</css>
- <xml>XML_STYLE</xml>
- <dtd>XML_STYLE</dtd>
- <xsd>XML_STYLE</xsd>
- <html>XML_STYLE</html>
- <htm>XML_STYLE</htm>
- <xsl>XML_STYLE</xsl>
- <fml>XML_STYLE</fml>
- <apt>DOUBLETILDE_STYLE</apt>
- <properties>SCRIPT_STYLE</properties>
- <sh>SCRIPT_STYLE</sh>
- <!-- <txt>TEXT</txt> -->
- <bat>BATCH</bat>
- <cmd>BATCH</cmd>
- <sql>DOUBLEDASHES_STYLE</sql>
- <jsp>DYNASCRIPT_STYLE</jsp>
- <ftl>FTL</ftl>
- <xhtml>XML_STYLE</xhtml>
- <vm>SHARPSTAR_STYLE</vm>
- <jspx>XML_STYLE</jspx>
- </mapping>
- <properties>
- <owner>Apache Software Foundation</owner>
- <year>${project.inceptionYear}</year>
- <email>dev@ctakes.apache.org</email>
- </properties>
- <strictCheck>true</strictCheck>
- </configuration>
- </plugin>
- <plugin>
- <artifactId>maven-assembly-plugin</artifactId>
- <version>2.3</version>
- </plugin>
- <plugin>
- <artifactId>maven-clean-plugin</artifactId>
- <version>2.4.1</version>
- </plugin>
- <plugin>
- <artifactId>maven-compiler-plugin</artifactId>
- <version>2.4</version>
- <configuration>
- <source>1.6</source>
- <target>1.6</target>
- <compilerArgument>-Xlint</compilerArgument>
- </configuration>
- </plugin>
- <plugin>
- <artifactId>maven-deploy-plugin</artifactId>
- <version>2.7</version>
- </plugin>
- <plugin>
- <artifactId>maven-eclipse-plugin</artifactId>
- <version>2.9</version>
- </plugin>
- <plugin>
- <artifactId>maven-gpg-plugin</artifactId>
- <version>1.4</version>
- </plugin>
- <plugin>
- <artifactId>maven-install-plugin</artifactId>
- <version>2.3.1</version>
- </plugin>
- <plugin>
- <artifactId>maven-jar-plugin</artifactId>
- <version>2.4</version>
- <configuration>
- <includes>
- <!-- Resources will be copied by the assembly
- No need for it to be inside the jar -->
- <include>**/*.class</include>
- <include>**/types/*.xml</include>
- <include>**/META-INF/**</include>
- </includes>
- </configuration>
- </plugin>
- <plugin>
- <artifactId>maven-javadoc-plugin</artifactId>
- <version>2.9</version>
- </plugin>
- <plugin>
- <artifactId>maven-release-plugin</artifactId>
- <version>2.3</version>
- <configuration>
- <useReleaseProfile>false</useReleaseProfile>
- <goals>deploy</goals>
- <arguments>-Papache-release</arguments>
- <mavenExecutorId>forked-path</mavenExecutorId>
- </configuration>
- </plugin>
- <plugin>
- <artifactId>maven-resources-plugin</artifactId>
- <version>2.5</version>
- </plugin>
- <plugin>
- <artifactId>maven-dependency-plugin</artifactId>
- <version>2.6</version>
- </plugin>
- <plugin>
- <artifactId>maven-site-plugin</artifactId>
- <version>3.1</version>
- </plugin>
- <plugin>
- <artifactId>maven-source-plugin</artifactId>
- <version>2.1.2</version>
- </plugin>
- <!-- Maven expects tests to start or end with "Test", not "Tests", so
- explicitly include files ending in "Tests" -->
- <plugin>
- <artifactId>maven-surefire-plugin</artifactId>
- <version>2.12</version>
- <configuration>
- <includes>
- <include>**/Test*.java</include>
- <include>**/*Test.java</include>
- <include>**/*Tests.java</include>
- <include>**/*TestCase.java</include>
- </includes>
- <argLine>-Xmx1536m</argLine>
- <forkedProcessTimeoutInSeconds>900</forkedProcessTimeoutInSeconds>
- <additionalClasspathElements>
- <additionalClasspathElement>ctakes-assertion-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-assertion-zoner-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-chunker-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-constituency-parser-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-core-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-coreference-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-dependency-parser-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-dictionary-lookup-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-drug-ner-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-lvg-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-ne-contexts-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-pad-term-spotter-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-pos-tagger-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-relation-extractor-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-side-effect-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-smoking-status-res/src/main/resources</additionalClasspathElement>
- <additionalClasspathElement>ctakes-temporal-res/src/main/resources</additionalClasspathElement>
- </additionalClasspathElements>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.rat</groupId>
- <artifactId>apache-rat-plugin</artifactId>
- <version>0.8</version>
- <executions>
- <execution>
- <phase>verify</phase>
- <goals>
- <goal>check</goal>
- </goals>
- <id>default-cli</id>
- </execution>
- </executions>
- <configuration>
- <excludes>
- <!-- File generated by maven-release-plugin -->
- <exclude>release.properties</exclude>
- <!-- Eclipse launch files -->
- <exclude>**/*.launch</exclude>
- <!-- Exclude target and eclipse files
- The default RAT ignoreEclipse doesn't work
- if there is a submodule that is commented out
- So excluding it explictly here -->
- <exclude>**/.classpath</exclude>
- <exclude>**/.project</exclude>
- <exclude>**/.settings/**</exclude>
- <exclude>**/target/**</exclude>
- <exclude>**/MANIFEST.MF</exclude>
- <!-- Exclude bin/model resources -->
- <exclude>**/resources/models/**</exclude>
- <exclude>**/src/main/resources/**</exclude>
- <exclude>**/src/test/resources/**</exclude>
- <exclude>**/META-INF/org.uimafit/types.txt</exclude>
- <!-- Exclude test data files -->
- <exclude>**/data/test/**</exclude>
- <exclude>**/data/**</exclude>
- <exclude>**/output/**</exclude>
- <exclude>**/sample_note.txt</exclude>
- </excludes>
- <numUnapprovedLicenses>0</numUnapprovedLicenses>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.eclipse.m2e</groupId>
- <artifactId>lifecycle-mapping</artifactId>
- <version>1.0</version>
- <configuration>
- <lifecycleMappingMetadata>
- <pluginExecutions>
- <pluginExecution>
- <!--
- This is needed to execute/unpack resources in m2e eclipse ide
- Currently used in the ctakes-dictionary-lookup project
- -->
- <pluginExecutionFilter>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-dependency-plugin</artifactId>
- <versionRange>[2.6,)</versionRange>
- <goals>
- <goal>unpack-dependencies</goal>
- </goals>
- </pluginExecutionFilter>
- <action>
- <execute>
- <runOnIncremental>true</runOnIncremental>
- </execute>
- </action>
- </pluginExecution>
- <pluginExecution>
- <!--
- Ignore the Maven remote resources plugin in Eclipse. We don't use it from Eclipse,
- and it causes a warning if m2e is not configured to ignore it as below.
- -->
- <pluginExecutionFilter>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-remote-resources-plugin</artifactId>
- <versionRange>[1.0.0,)</versionRange>
- <goals>
- <goal>process</goal>
- </goals>
- </pluginExecutionFilter>
- <action>
- <ignore />
- </action>
- </pluginExecution>
- </pluginExecutions>
- </lifecycleMappingMetadata>
- </configuration>
- </plugin>
- </plugins>
- </pluginManagement>
- </build>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+
+ <modelVersion>4.0.0</modelVersion>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes</artifactId>
+ <version>3.1.1</version>
+ <packaging>pom</packaging>
+ <name>Apache cTAKES</name>
+ <url>http://ctakes.apache.org</url>
+ <inceptionYear>2012</inceptionYear>
+ <scm>
+ <!-- In child modules, Maven will append ${artifactId} to the following
+ URLs -->
+ <connection>scm:svn:https://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.1-rc1</connection>
+ <developerConnection>scm:svn:https://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.1-rc1</developerConnection>
+ <url>https://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.1-rc1</url>
+ </scm>
+ <issueManagement>
+ <system>jira</system>
+ <url>https://issues.apache.org/jira/browse/ctakes</url>
+ </issueManagement>
+ <ciManagement>
+ <system>jenkins</system>
+ <url>https://builds.apache.org/job/ctakes-trunk/</url>
+ </ciManagement>
+ <mailingLists>
+ <mailingList>
+ <name>Apache cTAKES Users</name>
+ <subscribe>user-subscribe@ctakes.apache.org</subscribe>
+ <unsubscribe>user-unsubscribe@ctakes.apache.org</unsubscribe>
+ <post>user@ctakes.apache.org</post>
+ <archive>http://mail-archives.apache.org/mod_mbox/ctakes-user/</archive>
+ </mailingList>
+
+ <mailingList>
+ <name>Apache cTAKES Developers</name>
+ <subscribe>dev-subscribe@ctakes.apache.org</subscribe>
+ <unsubscribe>dev-unsubscribe@ctakes.apache.org</unsubscribe>
+ <post>dev@ctakes.apache.org</post>
+ <archive>http://mail-archives.apache.org/mod_mbox/ctakes-dev/</archive>
+ </mailingList>
+
+ <mailingList>
+ <name>Apache cTAKES Commits</name>
+ <subscribe>commits-subscribe@ctakes.apache.org</subscribe>
+ <unsubscribe>commits-unsubscribe@ctakes.apache.org</unsubscribe>
+ <archive>http://mail-archives.apache.org/mod_mbox/ctakes-commits/</archive>
+ </mailingList>
+
+ <mailingList>
+ <name>Apache cTAKES Notifications</name>
+ <subscribe>notifications-subscribe@ctakes.apache.org</subscribe>
+ <unsubscribe>notifications-unsubscribe@ctakes.apache.org</unsubscribe>
+ <archive>http://mail-archives.apache.org/mod_mbox/ctakes-notifications/</archive>
+ </mailingList>
+ </mailingLists>
+ <properties>
+ <ctakes.version>3.1.1</ctakes.version>
+ <maven.compiler.source>1.6</maven.compiler.source>
+ <maven.compiler.target>1.6</maven.compiler.target>
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+ </properties>
+
+ <parent>
+ <groupId>org.apache</groupId>
+ <artifactId>apache</artifactId>
+ <version>13</version>
+ </parent>
+
+ <modules>
+ <module>ctakes-utils</module>
+ <module>ctakes-core</module>
+ <module>ctakes-type-system</module>
+ <module>ctakes-pos-tagger</module>
+ <module>ctakes-chunker</module>
+ <module>ctakes-preprocessor</module>
+ <module>ctakes-dictionary-lookup</module>
+ <module>ctakes-context-tokenizer</module>
+ <module>ctakes-lvg</module>
+ <module>ctakes-ne-contexts</module>
+ <module>ctakes-constituency-parser</module>
+ <module>ctakes-coreference</module>
+ <module>ctakes-drug-ner</module>
+ <module>ctakes-side-effect</module>
+ <module>ctakes-smoking-status</module>
+ <module>ctakes-dependency-parser</module>
+ <module>ctakes-relation-extractor</module>
+ <module>ctakes-pad-term-spotter</module>
+ <module>ctakes-assertion</module>
+ <module>ctakes-assertion-zoner</module>
+ <module>ctakes-temporal</module>
+ <module>ctakes-clinical-pipeline</module>
+ <module>ctakes-distribution</module>
+ <module>ctakes-regression-test</module>
+ <module>ctakes-assertion-res</module>
+ <module>ctakes-chunker-res</module>
+ <module>ctakes-constituency-parser-res</module>
+ <module>ctakes-core-res</module>
+ <module>ctakes-coreference-res</module>
+ <module>ctakes-dependency-parser-res</module>
+ <module>ctakes-dictionary-lookup-res</module>
+ <module>ctakes-lvg-res</module>
+ <module>ctakes-pad-term-spotter-res</module>
+ <module>ctakes-pos-tagger-res</module>
+ <module>ctakes-relation-extractor-res</module>
+ <module>ctakes-side-effect-res</module>
+ <module>ctakes-smoking-status-res</module>
+ <module>ctakes-temporal-res</module>
+ <module>ctakes-assertion-zoner-res</module>
+ <module>ctakes-drug-ner-res</module>
+ <module>ctakes-ne-contexts-res</module>
+ <module>ctakes-template-filler</module>
+ <module>ctakes-examples</module>
+ </modules>
+ <dependencyManagement>
+ <dependencies>
+ <!-- cTAKES module versions -->
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-type-system</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-utils</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-core</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-core-res</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-dictionary-lookup</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-dictionary-lookup-res</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-preprocessor</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-pos-tagger</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-pos-tagger-res</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-chunker</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-chunker-res</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-lvg</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-lvg-res</artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-context-tokenizer
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-clinical-pipeline
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-pad-term-spotter
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-pad-term-spotter-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-ne-contexts
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-ne-contexts-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-assertion
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-assertion-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-assertion-zoner
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-assertion-zoner-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-constituency-parser
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-constituency-parser-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-coreference
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-coreference-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-drug-ner
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-drug-ner-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-side-effect
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-side-effect-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-smoking-status
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-smoking-status-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-dependency-parser
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-dependency-parser-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-relation-extractor
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-relation-extractor-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-temporal
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-temporal-res
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>
+ ctakes-distribution
+ </artifactId>
+ <version>${ctakes.version}</version>
+ </dependency>
+ <!-- cTAKES third party dependency versions -->
+ <dependency>
+ <groupId>jdom</groupId>
+ <artifactId>jdom</artifactId>
+ <version>1.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.jdom</groupId>
+ <artifactId>jdom2</artifactId>
+ <version>2.0.3</version>
+ </dependency>
+ <!-- <dependency> <groupId>jama</groupId> <artifactId>jama</artifactId>
+ <version>1.0.2</version> </dependency> -->
+ <dependency>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <version>[4.10]</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>log4j</groupId>
+ <artifactId>log4j</artifactId>
+ <version>1.2.16</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-core</artifactId>
+ <version>4.0.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-queries</artifactId>
+ <version>4.0.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-queryparser</artifactId>
+ <version>4.0.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-analyzers-common</artifactId>
+ <version>4.0.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.opennlp</groupId>
+ <artifactId>opennlp-maxent</artifactId>
+ <version>3.0.2-incubating</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.opennlp</groupId>
+ <artifactId>opennlp-tools</artifactId>
+ <version>1.5.2-incubating</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.uima</groupId>
+ <artifactId>uimaj-examples</artifactId>
+ <version>2.4.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.uima</groupId>
+ <artifactId>uimaj-core</artifactId>
+ <version>2.4.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.uimafit</groupId>
+ <artifactId>uimafit</artifactId>
+ <version>1.4.0</version>
+ <exclusions>
+ <exclusion>
+ <groupId>commons-io</groupId>
+ <artifactId>commons-io</artifactId>
+ </exclusion>
+ </exclusions>
+ </dependency>
+ <dependency>
+ <groupId>tw.edu.ntu.csie</groupId>
+ <artifactId>libsvm</artifactId>
+ <version>3.1</version>
+ </dependency>
+ <dependency>
+ <groupId>xerces</groupId>
+ <artifactId>xercesImpl</artifactId>
+ <version>2.10.0</version>
+ </dependency>
+ <!-- import a consistent set of versions for all ClearTK modules -->
+ <dependency>
+ <groupId>org.cleartk</groupId>
+ <artifactId>cleartk-release</artifactId>
+ <version>1.4.1</version>
+ <type>pom</type>
+ <scope>import</scope>
+ </dependency>
+ <dependency>
+ <groupId>args4j</groupId>
+ <artifactId>args4j</artifactId>
+ <version>2.0.16</version>
+ </dependency>
+ <dependency>
+ <groupId>com.lexicalscope.jewelcli</groupId>
+ <artifactId>jewelcli</artifactId>
+ <version>0.8.3</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-io</groupId>
+ <artifactId>commons-io</artifactId>
+ <version>2.0.1</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-lang</groupId>
+ <artifactId>commons-lang</artifactId>
+ <version>2.4</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-cli</groupId>
+ <artifactId>commons-cli</artifactId>
+ <version>1.2</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-logging</groupId>
+ <artifactId>commons-logging</artifactId>
+ <version>1.1.1</version>
+ </dependency>
+ <dependency>
+ <groupId>com.google.guava</groupId>
+ <artifactId>guava</artifactId>
+ <version>10.0</version>
+ </dependency>
+ <dependency>
+ <groupId>com.carrotsearch</groupId>
+ <artifactId>hppc</artifactId>
+ <version>0.4.1</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-core</artifactId>
+ <version>3.1.2.RELEASE</version>
+ </dependency>
+ <dependency>
+ <groupId>edu.mit.findstruct</groupId>
+ <artifactId>structmulti</artifactId>
+ <version>0.0.1</version>
+ </dependency>
+ <dependency>
+ <groupId>edu.mit.findstruct</groupId>
+ <artifactId>findstructapi</artifactId>
+ <version>0.0.1</version>
+ </dependency>
+ <dependency>
+ <groupId>com.googlecode.armbrust-file-utils</groupId>
+ <artifactId>sqlwrapper</artifactId>
+ <version>0.0.1</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sourceforge.openai</groupId>
+ <artifactId>openaifsm</artifactId>
+ <version>0.0.1</version>
+ </dependency>
+ <dependency>
+ <groupId>gov.nih.nlm.nls.lvg</groupId>
+ <artifactId>lvg2010dist</artifactId>
+ <version>0.0.1</version>
+ </dependency>
+ <dependency>
+ <groupId>com.googlecode.clearnlp</groupId>
+ <artifactId>clearnlp</artifactId>
+ <version>1.3.1</version>
+ </dependency>
+ </dependencies>
+ </dependencyManagement>
+ <build>
+ <!-- It's good practice to explicitly declare versions for all plugins -->
+ <pluginManagement>
+ <plugins>
+
+ <plugin>
+ <groupId>org.cleartk</groupId>
+ <artifactId>jcasgen-maven-plugin</artifactId>
+ <version>0.9.3</version>
+ <executions>
+ <execution>
+ <goals>
+ <goal>generate</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+ <plugin>
+ <groupId>com.mycila.maven-license-plugin</groupId>
+ <artifactId>maven-license-plugin</artifactId>
+ <version>1.9.0</version>
+ <configuration>
+ <header>ctakes-distribution/src/main/config/license_header.txt</header>
+ <excludes>
+ <!-- We're disabling .txt files for now because some Annotators may
+ not be able to handle standard comments in text files. This may break name
+ values pairs such as stopWords.txt -->
+ <exclude>**.txt</exclude>
+ </excludes>
+ <useDefaultMapping>false</useDefaultMapping>
+ <quiet>false</quiet>
+ <failIfMissing>false</failIfMissing>
+ <mapping>
+ <java>JAVADOC_STYLE</java>
+ <groovy>JAVADOC_STYLE</groovy>
+ <js>JAVADOC_STYLE</js>
+ <css>JAVADOC_STYLE</css>
+ <xml>XML_STYLE</xml>
+ <dtd>XML_STYLE</dtd>
+ <xsd>XML_STYLE</xsd>
+ <html>XML_STYLE</html>
+ <htm>XML_STYLE</htm>
+ <xsl>XML_STYLE</xsl>
+ <fml>XML_STYLE</fml>
+ <apt>DOUBLETILDE_STYLE</apt>
+ <properties>SCRIPT_STYLE</properties>
+ <sh>SCRIPT_STYLE</sh>
+ <!-- <txt>TEXT</txt> -->
+ <bat>BATCH</bat>
+ <cmd>BATCH</cmd>
+ <sql>DOUBLEDASHES_STYLE</sql>
+ <jsp>DYNASCRIPT_STYLE</jsp>
+ <ftl>FTL</ftl>
+ <xhtml>XML_STYLE</xhtml>
+ <vm>SHARPSTAR_STYLE</vm>
+ <jspx>XML_STYLE</jspx>
+ </mapping>
+ <properties>
+ <owner>Apache Software Foundation</owner>
+ <year>${project.inceptionYear}</year>
+ <email>dev@ctakes.apache.org</email>
+ </properties>
+ <strictCheck>true</strictCheck>
+ </configuration>
+ </plugin>
+ <plugin>
+ <artifactId>maven-assembly-plugin</artifactId>
+ <version>2.3</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-clean-plugin</artifactId>
+ <version>2.4.1</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-compiler-plugin</artifactId>
+ <version>2.4</version>
+ <configuration>
+ <source>1.6</source>
+ <target>1.6</target>
+ <compilerArgument>-Xlint</compilerArgument>
+ </configuration>
+ </plugin>
+ <plugin>
+ <artifactId>maven-deploy-plugin</artifactId>
+ <version>2.7</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-eclipse-plugin</artifactId>
+ <version>2.9</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-gpg-plugin</artifactId>
+ <version>1.4</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-install-plugin</artifactId>
+ <version>2.3.1</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-jar-plugin</artifactId>
+ <version>2.4</version>
+ <configuration>
+ <includes>
+ <!-- Resources will be copied by the assembly
+ No need for it to be inside the jar -->
+ <include>**/*.class</include>
+ <include>**/types/*.xml</include>
+ <include>**/META-INF/**</include>
+ </includes>
+ </configuration>
+ </plugin>
+ <plugin>
+ <artifactId>maven-javadoc-plugin</artifactId>
+ <version>2.9</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-release-plugin</artifactId>
+ <version>2.3</version>
+ <configuration>
+ <useReleaseProfile>false</useReleaseProfile>
+ <goals>deploy</goals>
+ <arguments>-Papache-release</arguments>
+ <mavenExecutorId>forked-path</mavenExecutorId>
+ </configuration>
+ </plugin>
+ <plugin>
+ <artifactId>maven-resources-plugin</artifactId>
+ <version>2.5</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-dependency-plugin</artifactId>
+ <version>2.6</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-site-plugin</artifactId>
+ <version>3.1</version>
+ </plugin>
+ <plugin>
+ <artifactId>maven-source-plugin</artifactId>
+ <version>2.1.2</version>
+ </plugin>
+ <!-- Maven expects tests to start or end with "Test", not "Tests", so
+ explicitly include files ending in "Tests" -->
+ <plugin>
+ <artifactId>maven-surefire-plugin</artifactId>
+ <version>2.12</version>
+ <configuration>
+ <includes>
+ <include>**/Test*.java</include>
+ <include>**/*Test.java</include>
+ <include>**/*Tests.java</include>
+ <include>**/*TestCase.java</include>
+ </includes>
+ <argLine>-Xmx1536m</argLine>
+ <forkedProcessTimeoutInSeconds>900</forkedProcessTimeoutInSeconds>
+ <additionalClasspathElements>
+ <additionalClasspathElement>ctakes-assertion-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-assertion-zoner-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-chunker-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-constituency-parser-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-core-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-coreference-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-dependency-parser-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-dictionary-lookup-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-drug-ner-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-lvg-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-ne-contexts-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-pad-term-spotter-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-pos-tagger-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-relation-extractor-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-side-effect-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-smoking-status-res/src/main/resources</additionalClasspathElement>
+ <additionalClasspathElement>ctakes-temporal-res/src/main/resources</additionalClasspathElement>
+ </additionalClasspathElements>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.rat</groupId>
+ <artifactId>apache-rat-plugin</artifactId>
+ <version>0.8</version>
+ <executions>
+ <execution>
+ <phase>verify</phase>
+ <goals>
+ <goal>check</goal>
+ </goals>
+ <id>default-cli</id>
+ </execution>
+ </executions>
+ <configuration>
+ <excludes>
+ <!-- File generated by maven-release-plugin -->
+ <exclude>release.properties</exclude>
+ <!-- Eclipse launch files -->
+ <exclude>**/*.launch</exclude>
+ <!-- Exclude target and eclipse files
+ The default RAT ignoreEclipse doesn't work
+ if there is a submodule that is commented out
+ So excluding it explictly here -->
+ <exclude>**/.classpath</exclude>
+ <exclude>**/.project</exclude>
+ <exclude>**/.settings/**</exclude>
+ <exclude>**/target/**</exclude>
+ <exclude>**/MANIFEST.MF</exclude>
+ <!-- Exclude bin/model resources -->
+ <exclude>**/resources/models/**</exclude>
+ <exclude>**/src/main/resources/**</exclude>
+ <exclude>**/src/test/resources/**</exclude>
+ <exclude>**/META-INF/org.uimafit/types.txt</exclude>
+ <!-- Exclude test data files -->
+ <exclude>**/data/test/**</exclude>
+ <exclude>**/data/**</exclude>
+ <exclude>**/output/**</exclude>
+ <exclude>**/sample_note.txt</exclude>
+ </excludes>
+ <numUnapprovedLicenses>0</numUnapprovedLicenses>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.eclipse.m2e</groupId>
+ <artifactId>lifecycle-mapping</artifactId>
+ <version>1.0</version>
+ <configuration>
+ <lifecycleMappingMetadata>
+ <pluginExecutions>
+ <pluginExecution>
+ <!--
+ This is needed to execute/unpack resources in m2e eclipse ide
+ Currently used in the ctakes-dictionary-lookup project
+ -->
+ <pluginExecutionFilter>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-dependency-plugin</artifactId>
+ <versionRange>[2.6,)</versionRange>
+ <goals>
+ <goal>unpack-dependencies</goal>
+ </goals>
+ </pluginExecutionFilter>
+ <action>
+ <execute>
+ <runOnIncremental>true</runOnIncremental>
+ </execute>
+ </action>
+ </pluginExecution>
+ <pluginExecution>
+ <!--
+ Ignore the Maven remote resources plugin in Eclipse. We don't use it from Eclipse,
+ and it causes a warning if m2e is not configured to ignore it as below.
+ -->
+ <pluginExecutionFilter>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-remote-resources-plugin</artifactId>
+ <versionRange>[1.0.0,)</versionRange>
+ <goals>
+ <goal>process</goal>
+ </goals>
+ </pluginExecutionFilter>
+ <action>
+ <ignore />
+ </action>
+ </pluginExecution>
+ </pluginExecutions>
+ </lifecycleMappingMetadata>
+ </configuration>
+ </plugin>
+ </plugins>
+ </pluginManagement>
+ </build>
+</project>