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Posted to issues@spark.apache.org by "Herman van Hovell (JIRA)" <ji...@apache.org> on 2018/07/18 11:27:00 UTC
[jira] [Updated] (SPARK-18600) BZ2 CRC read error needs better
reporting
[ https://issues.apache.org/jira/browse/SPARK-18600?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Herman van Hovell updated SPARK-18600:
--------------------------------------
Labels: spree (was: )
> BZ2 CRC read error needs better reporting
> -----------------------------------------
>
> Key: SPARK-18600
> URL: https://issues.apache.org/jira/browse/SPARK-18600
> Project: Spark
> Issue Type: Improvement
> Components: SQL
> Reporter: Charles R Allen
> Priority: Minor
> Labels: spree
>
> {code}
> 16/11/25 20:05:03 ERROR InsertIntoHadoopFsRelationCommand: Aborting job.
> org.apache.spark.SparkException: Job aborted due to stage failure: Task 148 in stage 5.0 failed 1 times, most recent failure: Lost task 148.0 in stage 5.0 (TID 5945, localhost): org.apache.spark.SparkException: Task failed while writing rows
> at org.apache.spark.sql.execution.datasources.DefaultWriterContainer.writeRows(WriterContainer.scala:261)
> at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand$$anonfun$run$1$$anonfun$apply$mcV$sp$1.apply(InsertIntoHadoopFsRelationCommand.scala:143)
> at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationCommand$$anonfun$run$1$$anonfun$apply$mcV$sp$1.apply(InsertIntoHadoopFsRelationCommand.scala:143)
> at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70)
> at org.apache.spark.scheduler.Task.run(Task.scala:86)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: com.univocity.parsers.common.TextParsingException: java.lang.IllegalStateException - Error reading from input
> Parser Configuration: CsvParserSettings:
> Auto configuration enabled=true
> Autodetect column delimiter=false
> Autodetect quotes=false
> Column reordering enabled=true
> Empty value=null
> Escape unquoted values=false
> Header extraction enabled=null
> Headers=[INTERVALSTARTTIME_GMT, INTERVALENDTIME_GMT, OPR_DT, OPR_HR, NODE_ID_XML, NODE_ID, NODE, MARKET_RUN_ID, LMP_TYPE, XML_DATA_ITEM, PNODE_RESMRID, GRP_TYPE, POS, VALUE, OPR_INTERVAL, GROUP]
> Ignore leading whitespaces=false
> Ignore trailing whitespaces=false
> Input buffer size=128
> Input reading on separate thread=false
> Keep escape sequences=false
> Line separator detection enabled=false
> Maximum number of characters per column=1000000
> Maximum number of columns=20480
> Normalize escaped line separators=true
> Null value=
> Number of records to read=all
> Row processor=none
> RowProcessor error handler=null
> Selected fields=none
> Skip empty lines=true
> Unescaped quote handling=STOP_AT_DELIMITERFormat configuration:
> CsvFormat:
> Comment character=\0
> Field delimiter=,
> Line separator (normalized)=\n
> Line separator sequence=\n
> Quote character="
> Quote escape character=\
> Quote escape escape character=null
> Internal state when error was thrown: line=27089, column=13, record=27089, charIndex=4451456, headers=[INTERVALSTARTTIME_GMT, INTERVALENDTIME_GMT, OPR_DT, OPR_HR, NODE_ID_XML, NODE_ID, NODE, MARKET_RUN_ID, LMP_TYPE, XML_DATA_ITEM, PNODE_RESMRID, GRP_TYPE, POS, VALUE, OPR_INTERVAL, GROUP]
> at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:302)
> at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:431)
> at org.apache.spark.sql.execution.datasources.csv.BulkCsvReader.next(CSVParser.scala:148)
> at org.apache.spark.sql.execution.datasources.csv.BulkCsvReader.next(CSVParser.scala:131)
> at scala.collection.Iterator$$anon$12.nextCur(Iterator.scala:434)
> at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:440)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
> at org.apache.spark.sql.execution.datasources.FileScanRDD$$anon$1.hasNext(FileScanRDD.scala:91)
> at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown Source)
> at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
> at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:370)
> at org.apache.spark.sql.execution.datasources.DefaultWriterContainer$$anonfun$writeRows$1.apply$mcV$sp(WriterContainer.scala:253)
> at org.apache.spark.sql.execution.datasources.DefaultWriterContainer$$anonfun$writeRows$1.apply(WriterContainer.scala:252)
> at org.apache.spark.sql.execution.datasources.DefaultWriterContainer$$anonfun$writeRows$1.apply(WriterContainer.scala:252)
> at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1345)
> at org.apache.spark.sql.execution.datasources.DefaultWriterContainer.writeRows(WriterContainer.scala:258)
> ... 8 more
> Caused by: java.lang.IllegalStateException: Error reading from input
> at com.univocity.parsers.common.input.DefaultCharInputReader.reloadBuffer(DefaultCharInputReader.java:77)
> at com.univocity.parsers.common.input.AbstractCharInputReader.updateBuffer(AbstractCharInputReader.java:160)
> at com.univocity.parsers.common.input.AbstractCharInputReader.nextChar(AbstractCharInputReader.java:213)
> at com.univocity.parsers.csv.CsvParser.parseRecord(CsvParser.java:135)
> at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:400)
> ... 22 more
> Caused by: java.io.IOException: crc error
> at org.apache.hadoop.io.compress.bzip2.CBZip2InputStream.reportCRCError(CBZip2InputStream.java:249)
> at org.apache.hadoop.io.compress.bzip2.CBZip2InputStream.endBlock(CBZip2InputStream.java:563)
> at org.apache.hadoop.io.compress.bzip2.CBZip2InputStream.setupNoRandPartA(CBZip2InputStream.java:1098)
> at org.apache.hadoop.io.compress.bzip2.CBZip2InputStream.setupNoRandPartB(CBZip2InputStream.java:1152)
> at org.apache.hadoop.io.compress.bzip2.CBZip2InputStream.read0(CBZip2InputStream.java:458)
> at org.apache.hadoop.io.compress.bzip2.CBZip2InputStream.read(CBZip2InputStream.java:411)
> at org.apache.hadoop.io.compress.BZip2Codec$BZip2CompressionInputStream.read(BZip2Codec.java:491)
> at java.io.InputStream.read(InputStream.java:101)
> at org.apache.hadoop.mapreduce.lib.input.CompressedSplitLineReader.fillBuffer(CompressedSplitLineReader.java:130)
> at org.apache.hadoop.util.LineReader.readDefaultLine(LineReader.java:216)
> at org.apache.hadoop.util.LineReader.readLine(LineReader.java:174)
> at org.apache.hadoop.mapreduce.lib.input.CompressedSplitLineReader.readLine(CompressedSplitLineReader.java:159)
> at org.apache.hadoop.mapreduce.lib.input.LineRecordReader.nextKeyValue(LineRecordReader.java:186)
> at org.apache.spark.sql.execution.datasources.RecordReaderIterator.hasNext(RecordReaderIterator.scala:39)
> at org.apache.spark.sql.execution.datasources.HadoopFileLinesReader.hasNext(HadoopFileLinesReader.scala:50)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
> at org.apache.spark.sql.execution.datasources.csv.StringIteratorReader.refill(CSVParser.scala:178)
> at org.apache.spark.sql.execution.datasources.csv.StringIteratorReader.read(CSVParser.scala:206)
> at org.apache.spark.sql.execution.datasources.csv.StringIteratorReader.read(CSVParser.scala:226)
> at com.univocity.parsers.common.input.DefaultCharInputReader.reloadBuffer(DefaultCharInputReader.java:75)
> ... 26 more
> {code}
> As far as I can tell, one of the bzip input streams had a crc error. But I can't really tell which one. Once I find the file I know I can look at line {{27089}}, but where that line appears is not clear to me how to investigate.
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