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Posted to commits@taverna.apache.org by st...@apache.org on 2018/08/15 13:59:36 UTC
[8/8] incubator-taverna-language git commit: Parse step outputs and
support DataLink CWL to Taverna conversion
Parse step outputs and support DataLink CWL to Taverna conversion
Merge branch 'pr-42' into cwlparser
Contributed by Majdi Haouech (ICLA on file)
See #42
Signed-off-by: Stian Soiland-Reyes <st...@apache.org>
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/commit/991224bd
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/tree/991224bd
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/diff/991224bd
Branch: refs/heads/cwlparser
Commit: 991224bd23be752922ce982977628a5a29869a1c
Parents: 9cd4b87 bebd694
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Wed Aug 15 14:59:11 2018 +0100
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Wed Aug 15 14:59:11 2018 +0100
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.../apache/taverna/scufl2/cwl/CWLParser.java | 11 +--
.../apache/taverna/scufl2/cwl/CWLReader.java | 1 +
.../apache/taverna/scufl2/cwl/Converter.java | 52 ++++++++++++-
.../taverna/scufl2/cwl/TavernaConverter.java | 81 ++++++++++++++++++++
.../taverna/scufl2/cwl/WorkflowParser.java | 6 ++
.../apache/taverna/scufl2/cwl/YAMLHelper.java | 38 +++++++++
.../scufl2/cwl/components/CommandLineTool.java | 6 +-
.../scufl2/cwl/components/InputPort.java | 2 +-
.../scufl2/cwl/components/OutputPort.java | 2 +-
.../scufl2/cwl/components/PortDetail.java | 4 +-
.../taverna/scufl2/cwl/components/Process.java | 35 ++++++++-
.../scufl2/cwl/components/ProcessFactory.java | 2 +-
.../scufl2/cwl/components/Reference.java | 5 +-
.../taverna/scufl2/cwl/components/Step.java | 18 ++++-
.../scufl2/cwl/components/WorkflowProcess.java | 14 +++-
.../taverna/scufl2/cwl/TestConverting.java | 14 +++-
.../apache/taverna/scufl2/cwl/TestParser.java | 3 -
.../scufl2/cwl/TestTavernaConverter.java | 80 +++++++++++++++++++
.../taverna/scufl2/cwl/TestWorkflowNesting.java | 21 ++---
.../taverna/scufl2/cwl/TestWorkflowProcess.java | 5 ++
.../src/test/resources/hello_world.cwl | 2 +-
.../test/resources/workflow_with_workflow.cwl | 4 +-
22 files changed, 354 insertions(+), 52 deletions(-)
----------------------------------------------------------------------