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Posted to dev@ctakes.apache.org by "Masanz, James J." <Ma...@mayo.edu> on 2012/11/01 15:46:25 UTC
[VOTE] release cTAKES 2.6-incubating RC2
The archive containing RC2 of ctakes-2.6-incubating is in
http://people.apache.org/~james-masanz/RCs/2.6-RC2/
Note: It is more than 800MB.
2.6 does include a bundled copy of parts of the UMLS. If there is a hard requirement that prevents this please reply to
http://markmail.org/search/+list:org.apache.incubator.ctakes-dev#query:list%3Aorg.apache.incubator.ctakes-dev%20from%3A%22Masanz%2C%20James%20J.%22+page:1+mid:thm6uuk4sdudhe2a+state:results<http://markmail.org/search/+list:org.apache.incubator.ctakes-dev>)
2.6 does not include the package name updates to reflect apache.org, and maven was not used to generate the build.
(The build was done like the build for 2.5 had been done)
The "install" is to just unzip the archive.
To run cTAKES, you can start the CVD (or CPE) GUI using the script/BAT files found within the top level directory.
For the CVD GUI, select an aggregate to load, such as cTAKESdesc/cpddesc/analysis_engine/AggregatePlaintextProcessor.xml
Then run the aggregate you just loaded using the menu options.
The archive includes source, compiled .class files, and a jar.
The source from which this release was built is in SVN at
https://svn.apache.org/repos/asf/incubator/ctakes/branches/SHARPn-cTAKES/
Also included there, within "files for pipeline root", are the ant scripts used to merge the source directories and build the archive (similar to the way 2.5 was).
Please vote on release:
[ ] +1 OK to release
[ ] 0 Don't care
[ ] -1 Not OK to release, because ...
Vote will remain open for at least 72 hours.
-- James Masanz
RE: [VOTE] release cTAKES 2.6-incubating RC2
Posted by "Chen, Pei" <Pe...@childrens.harvard.edu>.
Hi James,
I was able to verify:
1) checksum - Ok
2) pgp sig - Ok
3) RAT - N/A as 2.6 still uses the old copyrights and namespaces
4) application - Was able to run runctakesCVD.sh, load DefaultAggregatePlaintextPipeline with a test note.
Will probably need input from our mentors for the other items...
--Pei
> -----Original Message-----
> From: Chen, Pei [mailto:Pei.Chen@childrens.harvard.edu]
> Sent: Friday, November 02, 2012 3:42 PM
> To: ctakes-dev@incubator.apache.org
> Subject: RE: [VOTE] release cTAKES 2.6-incubating RC2
>
> Hi Sean,
> That is very exciting news about a new MedER (CTAKES-95) module that
> could potential replace the current DrugNER module.
> I think it would be great to bring the discussions and the actual development
> of modules into the cTAKES community here ((if possible of course)...
>
> As our mentors kindly reminded us earlier, there are many benefits to this
> including the community involvement and help, as well as potential IP issues
> if new code is developed outside of ASF and then brought in later on.
> Just my 1/2 cent...
>
> Until CTAKES-95 happens, I think we might still have to minimally support the
> current DrugNER- but perhaps no more new enhancements and only critical
> bug fixes?
>
> --Pei
>
> > -----Original Message-----
> > From: Murphy, Sean P. [mailto:Murphy.Sean@mayo.edu]
> > Sent: Friday, November 02, 2012 2:43 PM
> > To: 'ctakes-dev@incubator.apache.org'
> > Subject: FW: [VOTE] release cTAKES 2.6-incubating RC2
> >
> > Regarding this issues related to Drug NER; I'm voting 0 due to the
> > following
> > reason:
> >
> > With the SHARP initiative driving new development for alternate drug
> > extraction pipeline MedER, I feel that it is only a matter of a couple
> > more iterations before the functionality will eclipse that of the
> > legacy Drug NER pipeline.
> >
> > I would still like to participate in testing and development for Drug
> > NER as time permits. However, it appears must funding will be related
> > to MedER development in the near future.
> >
> > ~Sean
> >
> > -----Original Message-----
> > From: Masanz, James J.
> > Sent: Friday, November 02, 2012 10:28 AM
> > To: Murphy, Sean P.; Kaggal, Vinod C.
> > Subject: FW: [VOTE] release cTAKES 2.6-incubating RC2
> >
> > Hi Guys,
> > Sean, if you could take a look at the Drug NER (See below) that would
> > be great.
> > Thanks
> >
> > ________________________________________
> > From: ctakes-dev-return-796-
> > Masanz.James=mayo.edu@incubator.apache.org [ctakes-dev-return-796-
> > Masanz.James=mayo.edu@incubator.apache.org] on behalf of Masanz,
> James
> > J.
> > Sent: Thursday, November 01, 2012 9:46 AM
> > To: 'ctakes-dev@incubator.apache.org'
> > Subject: [VOTE] release cTAKES 2.6-incubating RC2
> >
> > The archive containing RC2 of ctakes-2.6-incubating is in
> > http://people.apache.org/~james-masanz/RCs/2.6-RC2/
> > Note: It is more than 800MB.
> > 2.6 does include a bundled copy of parts of the UMLS. If there is a
> > hard requirement that prevents this please reply to
> >
> > http://markmail.org/search/+list:org.apache.incubator.ctakes-
> > dev#query:list%3Aorg.apache.incubator.ctakes-
> >
> dev%20from%3A%22Masanz%2C%20James%20J.%22+page:1+mid:thm6uuk
> > 4sdudhe2a+state:results<http://markmail.org/search/+list:org.apache.in
> > 4sdudhe2a+cub
> > ator.ctakes-dev>)
> >
> >
> > 2.6 does not include the package name updates to reflect apache.org,
> > and maven was not used to generate the build.
> > (The build was done like the build for 2.5 had been done)
> >
> > The "install" is to just unzip the archive.
> >
> > To run cTAKES, you can start the CVD (or CPE) GUI using the script/BAT
> > files found within the top level directory.
> > For the CVD GUI, select an aggregate to load, such as
> > cTAKESdesc/cpddesc/analysis_engine/AggregatePlaintextProcessor.xml
> > Then run the aggregate you just loaded using the menu options.
> >
> > The archive includes source, compiled .class files, and a jar.
> >
> > The source from which this release was built is in SVN at
> > https://svn.apache.org/repos/asf/incubator/ctakes/branches/SHARPn-
> > cTAKES/
> >
> > Also included there, within "files for pipeline root", are the ant
> > scripts used to merge the source directories and build the archive
> > (similar to the way 2.5 was).
> >
> > Please vote on release:
> > [ ] +1 OK to release
> > [ ] 0 Don't care
> > [ ] -1 Not OK to release, because ...
> >
> > Vote will remain open for at least 72 hours.
> >
> > -- James Masanz
RE: [VOTE] release cTAKES 2.6-incubating RC2
Posted by "Chen, Pei" <Pe...@childrens.harvard.edu>.
Hi Sean,
That is very exciting news about a new MedER (CTAKES-95) module that could potential replace the current DrugNER module.
I think it would be great to bring the discussions and the actual development of modules into the cTAKES community here ((if possible of course)...
As our mentors kindly reminded us earlier, there are many benefits to this including the community involvement and help, as well as potential IP issues if new code is developed outside of ASF and then brought in later on.
Just my 1/2 cent...
Until CTAKES-95 happens, I think we might still have to minimally support the current DrugNER- but perhaps no more new enhancements and only critical bug fixes?
--Pei
> -----Original Message-----
> From: Murphy, Sean P. [mailto:Murphy.Sean@mayo.edu]
> Sent: Friday, November 02, 2012 2:43 PM
> To: 'ctakes-dev@incubator.apache.org'
> Subject: FW: [VOTE] release cTAKES 2.6-incubating RC2
>
> Regarding this issues related to Drug NER; I'm voting 0 due to the following
> reason:
>
> With the SHARP initiative driving new development for alternate drug
> extraction pipeline MedER, I feel that it is only a matter of a couple more
> iterations before the functionality will eclipse that of the legacy Drug NER
> pipeline.
>
> I would still like to participate in testing and development for Drug NER as
> time permits. However, it appears must funding will be related to MedER
> development in the near future.
>
> ~Sean
>
> -----Original Message-----
> From: Masanz, James J.
> Sent: Friday, November 02, 2012 10:28 AM
> To: Murphy, Sean P.; Kaggal, Vinod C.
> Subject: FW: [VOTE] release cTAKES 2.6-incubating RC2
>
> Hi Guys,
> Sean, if you could take a look at the Drug NER (See below) that would be
> great.
> Thanks
>
> ________________________________________
> From: ctakes-dev-return-796-
> Masanz.James=mayo.edu@incubator.apache.org [ctakes-dev-return-796-
> Masanz.James=mayo.edu@incubator.apache.org] on behalf of Masanz,
> James J.
> Sent: Thursday, November 01, 2012 9:46 AM
> To: 'ctakes-dev@incubator.apache.org'
> Subject: [VOTE] release cTAKES 2.6-incubating RC2
>
> The archive containing RC2 of ctakes-2.6-incubating is in
> http://people.apache.org/~james-masanz/RCs/2.6-RC2/
> Note: It is more than 800MB.
> 2.6 does include a bundled copy of parts of the UMLS. If there is a hard
> requirement that prevents this please reply to
>
> http://markmail.org/search/+list:org.apache.incubator.ctakes-
> dev#query:list%3Aorg.apache.incubator.ctakes-
> dev%20from%3A%22Masanz%2C%20James%20J.%22+page:1+mid:thm6uuk
> 4sdudhe2a+state:results<http://markmail.org/search/+list:org.apache.incub
> ator.ctakes-dev>)
>
>
> 2.6 does not include the package name updates to reflect apache.org, and
> maven was not used to generate the build.
> (The build was done like the build for 2.5 had been done)
>
> The "install" is to just unzip the archive.
>
> To run cTAKES, you can start the CVD (or CPE) GUI using the script/BAT files
> found within the top level directory.
> For the CVD GUI, select an aggregate to load, such as
> cTAKESdesc/cpddesc/analysis_engine/AggregatePlaintextProcessor.xml
> Then run the aggregate you just loaded using the menu options.
>
> The archive includes source, compiled .class files, and a jar.
>
> The source from which this release was built is in SVN at
> https://svn.apache.org/repos/asf/incubator/ctakes/branches/SHARPn-
> cTAKES/
>
> Also included there, within "files for pipeline root", are the ant scripts used to
> merge the source directories and build the archive (similar to the way 2.5
> was).
>
> Please vote on release:
> [ ] +1 OK to release
> [ ] 0 Don't care
> [ ] -1 Not OK to release, because ...
>
> Vote will remain open for at least 72 hours.
>
> -- James Masanz
FW: [VOTE] release cTAKES 2.6-incubating RC2
Posted by "Murphy, Sean P." <Mu...@mayo.edu>.
Regarding this issues related to Drug NER; I'm voting 0 due to the following reason:
With the SHARP initiative driving new development for alternate drug extraction pipeline MedER, I feel that it is only a matter of a couple more iterations before the functionality will eclipse that of the legacy Drug NER pipeline.
I would still like to participate in testing and development for Drug NER as time permits. However, it appears must funding will be related to MedER development in the near future.
~Sean
-----Original Message-----
From: Masanz, James J.
Sent: Friday, November 02, 2012 10:28 AM
To: Murphy, Sean P.; Kaggal, Vinod C.
Subject: FW: [VOTE] release cTAKES 2.6-incubating RC2
Hi Guys,
Sean, if you could take a look at the Drug NER (See below) that would be great.
Thanks
________________________________________
From: ctakes-dev-return-796-Masanz.James=mayo.edu@incubator.apache.org [ctakes-dev-return-796-Masanz.James=mayo.edu@incubator.apache.org] on behalf of Masanz, James J.
Sent: Thursday, November 01, 2012 9:46 AM
To: 'ctakes-dev@incubator.apache.org'
Subject: [VOTE] release cTAKES 2.6-incubating RC2
The archive containing RC2 of ctakes-2.6-incubating is in http://people.apache.org/~james-masanz/RCs/2.6-RC2/
Note: It is more than 800MB.
2.6 does include a bundled copy of parts of the UMLS. If there is a hard requirement that prevents this please reply to
http://markmail.org/search/+list:org.apache.incubator.ctakes-dev#query:list%3Aorg.apache.incubator.ctakes-dev%20from%3A%22Masanz%2C%20James%20J.%22+page:1+mid:thm6uuk4sdudhe2a+state:results<http://markmail.org/search/+list:org.apache.incubator.ctakes-dev>)
2.6 does not include the package name updates to reflect apache.org, and maven was not used to generate the build.
(The build was done like the build for 2.5 had been done)
The "install" is to just unzip the archive.
To run cTAKES, you can start the CVD (or CPE) GUI using the script/BAT files found within the top level directory.
For the CVD GUI, select an aggregate to load, such as cTAKESdesc/cpddesc/analysis_engine/AggregatePlaintextProcessor.xml
Then run the aggregate you just loaded using the menu options.
The archive includes source, compiled .class files, and a jar.
The source from which this release was built is in SVN at https://svn.apache.org/repos/asf/incubator/ctakes/branches/SHARPn-cTAKES/
Also included there, within "files for pipeline root", are the ant scripts used to merge the source directories and build the archive (similar to the way 2.5 was).
Please vote on release:
[ ] +1 OK to release
[ ] 0 Don't care
[ ] -1 Not OK to release, because ...
Vote will remain open for at least 72 hours.
-- James Masanz