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Posted to dev@taverna.apache.org by Ian Dunlop <Ia...@manchester.ac.uk> on 2015/06/29 17:34:29 UTC
gsoc taverna mobile - creating a run causes 'fatal' error and app
stops.
Hello,
I got a ��fatal�� error which the emulator reported when clicking on ��create run��:
06-29 15:25:39.554 8216-8216/mobile.taverna.apache.org.tavernamobile E/AndroidRuntime�s FATAL EXCEPTION: main
Process: mobile.taverna.apache.org.tavernamobile, PID: 8216
java.lang.NullPointerException: Attempt to invoke virtual method 'void android.app.AlertDialog.show()' on a null object reference
at org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFragment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
at org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFragment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
at android.os.AsyncTask.finish(AsyncTask.java:636)
at android.os.AsyncTask.access$500(AsyncTask.java:177)
at android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java:653)
at android.os.Handler.dispatchMessage(Handler.java:102)
at android.os.Looper.loop(Looper.java:135)
at android.app.ActivityThread.main(ActivityThread.java:5257)
at java.lang.reflect.Method.invoke(Native Method)
at java.lang.reflect.Method.invoke(Method.java:372)
at com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:903)
at com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
The device reported that the app had stopped running but in fact it returned it to the workflows view but all the workflows had disappeared from the view.
I guess it��s probably because this functionality is not ready yet but I figured I should report it anyway.
Cheers,
Ian
RE: gsoc taverna mobile - creating a run causes 'fatal' error and
app stops.
Posted by Ian Dunlop <Ia...@manchester.ac.uk>.
Hello,
That’s good news. Can’t wait to see it working in the app – let me know when you have committed the code. By the way, I think the mailing list removes attachments, probably best to either add screenshots to JIRA or send links to the screenshots in something like dropbox or google drive.
Cheers,
Ian
From: Larry Akah [mailto:larryakah@gmail.com]
Sent: 01 July 2015 20:07
To: dev@taverna.incubator.apache.org
Subject: Re: gsoc taverna mobile - creating a run causes 'fatal' error and app stops.
Great, i think its working. I have tested it from a REST client in chrome and i receieved the 201 status code and the structure of the workflow. Find here attached a screenshot of the post request.
Next up, i will be incorporating that into the app.
cheers
2015-06-30 6:39 GMT-05:00 Larry Akah <la...@gmail.com>>:
Ok, thanks.
When i try that, i will send my feedback.
Cheers
2015-06-30 6:35 GMT-05:00 Ian Dunlop <ia...@manchester.ac.uk>>:
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Hello,
I think the workflow can just be sent as it is. The request is JSON
formatted but the things inside the request don't have to be. The
t2flow/xml can be sent base64 encoded as they are.
Cheers,
Ian
On 30/06/15 12:32, Larry Akah wrote:
> Hello, The workflows we get from myexperiment are formatted as xml
> or t2flow files. Do these absolutely need to be converted in json
> before posting or they can be sent as is?
>
> Cheers
>
> 2015-06-30 5:11 GMT-05:00 Ian Dunlop
> <ia...@manchester.ac.uk>>:
>
> Hello,
>
> I've had a chat with the taverna player developer and you need to
> send a request as follows:
>
> POST to /workflows.json
>
> {"workflow" : { "document" :
> "data:application/octet-stream;base64,BASE64 ENCODED WORKFLOW GOES
> HERE"}}
>
> using HTTP basic auth with username:password base64 encoded in the
> Authorization header in the request e.g. Authorization: Basic
> QWxhZGRpbjpvcGVuIHNlc2FtZQ==. You have to specify .json because
> the content type is not being respected for some reason.
>
>
> Here's an example using curl: curl -u your_username -X POST -H
> "Content-Type: application/json" -d@wf.json<ma...@wf.json>
> http://taverna-player-server/workflows.json
>
> where wf.json is the workflow file, this would then prompt for a
> passwor d. Hope this helps, please let us know how you get on.
>
> Cheers,
>
> Ian
>
> On 29/06/15 19:23, Larry Akah wrote:
>>>> I need some help with uploading a workflow to the player. The
>>>> API doesn't make it seem possible currently. How is it done?
>>>>
>>>> cheers
>>>>
>>>> 2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>>:
>>>>
>>>>> Yes, its not yet ready. i still need to adjust that because
>>>>> at first , i was using the player to fetch workflows and
>>>>> derived a run skeleton to use for creating workflows. There
>>>>> is still some stuff that needs to be fixed there.
>>>>>
>>>>> Cheers
>>>>>
>>>>> 2015-06-29 16:34 GMT+01:00 Ian Dunlop
>>>>> <Ia...@manchester.ac.uk>>:
>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> I got a ‘fatal’ error which the emulator reported when
>>>>>> clicking on ‘create run’:
>>>>>>
>>>>>> 06-29 15:25:39.554
>>>>>> 8216-8216/mobile.taverna.apache.org.tavernamobile
>>>>>> E/AndroidRuntime﹕ FATAL EXCEPTION: main Process:
>>>>>> mobile.taverna.apache.org.tavernamobile, PID: 8216
>>>>>> java.lang.NullPointerException: Attempt to invoke
>>>>>> virtual method 'void android.app.AlertDialog.show()' on a
>>>>>> null object reference at
>>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
lFr
>
>>>>>>
agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
>>>>>>
>>>>>>
> at
>>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
lFr
>
>>>>>>
agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
>>>>>>
>>>>>>
> at android.os.AsyncTask.finish(AsyncTask.java:636)
>>>>>> at android.os.AsyncTask.access$500(AsyncTask.java:177)
>>>>>> at
>>>>>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java
:65
>
>>>>>>
3)
>>>>>>
>>>>>>
> at android.os.Handler.dispatchMessage(Handler.java:102)
>>>>>> at android.os.Looper.loop(Looper.java:135) at
>>>>>> android.app.ActivityThread.main(ActivityThread.java:5257)
>>>>>> at java.lang.reflect.Method.invoke(Native Method) at
>>>>>> java.lang.reflect.Method.invoke(Method.java:372) at
>>>>>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(Zygote
Ini
>
>>>>>>
t.java:903)
>>>>>>
>>>>>>
> at
>>>>>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
>>>>>>
>>>>>>
>>>>>>
The device reported that the app had stopped running but in
>>>>>> fact it returned it to the workflows view but all the
>>>>>> workflows had disappeared from the view. I guess it’s
>>>>>> probably because this functionality is not ready yet but
>>>>>> I figured I should report it anyway.
>>>>>>
>>>>>> Cheers,
>>>>>>
>>>>>> Ian
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> -- *Akah Larry N.H*
>>>>>
>>>>> *Lead Software Engineer @ GiftedMom* *Founder IceTeck Inc*
>>>>> *www.iceteck.com<http://www.iceteck.com>*
>>>>>
>>>>> Developing technologies for emergence and sustainable
>>>>> development.
>>>>>
>>>>>
>>>>
>>>>
>>
>
>
>
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--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com<http://www.iceteck.com>*
Developing technologies for emergence and sustainable development.
--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com<http://www.iceteck.com>*
Developing technologies for emergence and sustainable development.
Re: gsoc taverna mobile - creating a run causes 'fatal' error and app stops.
Posted by Larry Akah <la...@gmail.com>.
Great, i think its working. I have tested it from a REST client in chrome
and i receieved the 201 status code and the structure of the workflow. Find
here attached a screenshot of the post request.
Next up, i will be incorporating that into the app.
cheers
2015-06-30 6:39 GMT-05:00 Larry Akah <la...@gmail.com>:
> Ok, thanks.
> When i try that, i will send my feedback.
>
> Cheers
>
> 2015-06-30 6:35 GMT-05:00 Ian Dunlop <ia...@manchester.ac.uk>:
>
>> -----BEGIN PGP SIGNED MESSAGE-----
>> Hash: SHA1
>>
>> Hello,
>>
>> I think the workflow can just be sent as it is. The request is JSON
>> formatted but the things inside the request don't have to be. The
>> t2flow/xml can be sent base64 encoded as they are.
>>
>> Cheers,
>>
>> Ian
>>
>> On 30/06/15 12:32, Larry Akah wrote:
>> > Hello, The workflows we get from myexperiment are formatted as xml
>> > or t2flow files. Do these absolutely need to be converted in json
>> > before posting or they can be sent as is?
>> >
>> > Cheers
>> >
>> > 2015-06-30 5:11 GMT-05:00 Ian Dunlop
>> > <ia...@manchester.ac.uk>:
>> >
>> > Hello,
>> >
>> > I've had a chat with the taverna player developer and you need to
>> > send a request as follows:
>> >
>> > POST to /workflows.json
>> >
>> > {"workflow" : { "document" :
>> > "data:application/octet-stream;base64,BASE64 ENCODED WORKFLOW GOES
>> > HERE"}}
>> >
>> > using HTTP basic auth with username:password base64 encoded in the
>> > Authorization header in the request e.g. Authorization: Basic
>> > QWxhZGRpbjpvcGVuIHNlc2FtZQ==. You have to specify .json because
>> > the content type is not being respected for some reason.
>> >
>> >
>> > Here's an example using curl: curl -u your_username -X POST -H
>> > "Content-Type: application/json" -d@wf.json
>> > http://taverna-player-server/workflows.json
>> >
>> > where wf.json is the workflow file, this would then prompt for a
>> > passwor d. Hope this helps, please let us know how you get on.
>> >
>> > Cheers,
>> >
>> > Ian
>> >
>> > On 29/06/15 19:23, Larry Akah wrote:
>> >>>> I need some help with uploading a workflow to the player. The
>> >>>> API doesn't make it seem possible currently. How is it done?
>> >>>>
>> >>>> cheers
>> >>>>
>> >>>> 2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>:
>> >>>>
>> >>>>> Yes, its not yet ready. i still need to adjust that because
>> >>>>> at first , i was using the player to fetch workflows and
>> >>>>> derived a run skeleton to use for creating workflows. There
>> >>>>> is still some stuff that needs to be fixed there.
>> >>>>>
>> >>>>> Cheers
>> >>>>>
>> >>>>> 2015-06-29 16:34 GMT+01:00 Ian Dunlop
>> >>>>> <Ia...@manchester.ac.uk>:
>> >>>>>
>> >>>>>> Hello,
>> >>>>>>
>> >>>>>> I got a ‘fatal’ error which the emulator reported when
>> >>>>>> clicking on ‘create run’:
>> >>>>>>
>> >>>>>> 06-29 15:25:39.554
>> >>>>>> 8216-8216/mobile.taverna.apache.org.tavernamobile
>> >>>>>> E/AndroidRuntime﹕ FATAL EXCEPTION: main Process:
>> >>>>>> mobile.taverna.apache.org.tavernamobile, PID: 8216
>> >>>>>> java.lang.NullPointerException: Attempt to invoke
>> >>>>>> virtual method 'void android.app.AlertDialog.show()' on a
>> >>>>>> null object reference at
>> >>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
>> lFr
>> >
>> >>>>>>
>> agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
>> >>>>>>
>> >>>>>>
>> > at
>> >>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
>> lFr
>> >
>> >>>>>>
>> agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
>> >>>>>>
>> >>>>>>
>> > at android.os.AsyncTask.finish(AsyncTask.java:636)
>> >>>>>> at android.os.AsyncTask.access$500(AsyncTask.java:177)
>> >>>>>> at
>> >>>>>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java
>> :65
>> >
>> >>>>>>
>> 3)
>> >>>>>>
>> >>>>>>
>> > at android.os.Handler.dispatchMessage(Handler.java:102)
>> >>>>>> at android.os.Looper.loop(Looper.java:135) at
>> >>>>>> android.app.ActivityThread.main(ActivityThread.java:5257)
>> >>>>>> at java.lang.reflect.Method.invoke(Native Method) at
>> >>>>>> java.lang.reflect.Method.invoke(Method.java:372) at
>> >>>>>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(Zygote
>> Ini
>> >
>> >>>>>>
>> t.java:903)
>> >>>>>>
>> >>>>>>
>> > at
>> >>>>>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> The device reported that the app had stopped running but in
>> >>>>>> fact it returned it to the workflows view but all the
>> >>>>>> workflows had disappeared from the view. I guess it’s
>> >>>>>> probably because this functionality is not ready yet but
>> >>>>>> I figured I should report it anyway.
>> >>>>>>
>> >>>>>> Cheers,
>> >>>>>>
>> >>>>>> Ian
>> >>>>>>
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>> -- *Akah Larry N.H*
>> >>>>>
>> >>>>> *Lead Software Engineer @ GiftedMom* *Founder IceTeck Inc*
>> >>>>> *www.iceteck.com*
>> >>>>>
>> >>>>> Developing technologies for emergence and sustainable
>> >>>>> development.
>> >>>>>
>> >>>>>
>> >>>>
>> >>>>
>> >>
>> >
>> >
>> >
>> -----BEGIN PGP SIGNATURE-----
>> Version: GnuPG v1
>>
>> iQEcBAEBAgAGBQJVkn8TAAoJEPK45GBX+Cy5iC0IAJ9YpVLfGxgdd+LHyo3eOMfY
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>>
>
>
>
> --
> *Akah Larry N.H*
>
> *Lead Software Engineer @ GiftedMom*
> *Founder IceTeck Inc*
> *www.iceteck.com*
>
> Developing technologies for emergence and sustainable development.
>
>
--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com*
Developing technologies for emergence and sustainable development.
Re: gsoc taverna mobile - creating a run causes 'fatal' error and app stops.
Posted by Larry Akah <la...@gmail.com>.
Ok, thanks.
When i try that, i will send my feedback.
Cheers
2015-06-30 6:35 GMT-05:00 Ian Dunlop <ia...@manchester.ac.uk>:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> Hello,
>
> I think the workflow can just be sent as it is. The request is JSON
> formatted but the things inside the request don't have to be. The
> t2flow/xml can be sent base64 encoded as they are.
>
> Cheers,
>
> Ian
>
> On 30/06/15 12:32, Larry Akah wrote:
> > Hello, The workflows we get from myexperiment are formatted as xml
> > or t2flow files. Do these absolutely need to be converted in json
> > before posting or they can be sent as is?
> >
> > Cheers
> >
> > 2015-06-30 5:11 GMT-05:00 Ian Dunlop
> > <ia...@manchester.ac.uk>:
> >
> > Hello,
> >
> > I've had a chat with the taverna player developer and you need to
> > send a request as follows:
> >
> > POST to /workflows.json
> >
> > {"workflow" : { "document" :
> > "data:application/octet-stream;base64,BASE64 ENCODED WORKFLOW GOES
> > HERE"}}
> >
> > using HTTP basic auth with username:password base64 encoded in the
> > Authorization header in the request e.g. Authorization: Basic
> > QWxhZGRpbjpvcGVuIHNlc2FtZQ==. You have to specify .json because
> > the content type is not being respected for some reason.
> >
> >
> > Here's an example using curl: curl -u your_username -X POST -H
> > "Content-Type: application/json" -d@wf.json
> > http://taverna-player-server/workflows.json
> >
> > where wf.json is the workflow file, this would then prompt for a
> > passwor d. Hope this helps, please let us know how you get on.
> >
> > Cheers,
> >
> > Ian
> >
> > On 29/06/15 19:23, Larry Akah wrote:
> >>>> I need some help with uploading a workflow to the player. The
> >>>> API doesn't make it seem possible currently. How is it done?
> >>>>
> >>>> cheers
> >>>>
> >>>> 2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>:
> >>>>
> >>>>> Yes, its not yet ready. i still need to adjust that because
> >>>>> at first , i was using the player to fetch workflows and
> >>>>> derived a run skeleton to use for creating workflows. There
> >>>>> is still some stuff that needs to be fixed there.
> >>>>>
> >>>>> Cheers
> >>>>>
> >>>>> 2015-06-29 16:34 GMT+01:00 Ian Dunlop
> >>>>> <Ia...@manchester.ac.uk>:
> >>>>>
> >>>>>> Hello,
> >>>>>>
> >>>>>> I got a ‘fatal’ error which the emulator reported when
> >>>>>> clicking on ‘create run’:
> >>>>>>
> >>>>>> 06-29 15:25:39.554
> >>>>>> 8216-8216/mobile.taverna.apache.org.tavernamobile
> >>>>>> E/AndroidRuntime﹕ FATAL EXCEPTION: main Process:
> >>>>>> mobile.taverna.apache.org.tavernamobile, PID: 8216
> >>>>>> java.lang.NullPointerException: Attempt to invoke
> >>>>>> virtual method 'void android.app.AlertDialog.show()' on a
> >>>>>> null object reference at
> >>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
> lFr
> >
> >>>>>>
> agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
> >>>>>>
> >>>>>>
> > at
> >>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
> lFr
> >
> >>>>>>
> agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
> >>>>>>
> >>>>>>
> > at android.os.AsyncTask.finish(AsyncTask.java:636)
> >>>>>> at android.os.AsyncTask.access$500(AsyncTask.java:177)
> >>>>>> at
> >>>>>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java
> :65
> >
> >>>>>>
> 3)
> >>>>>>
> >>>>>>
> > at android.os.Handler.dispatchMessage(Handler.java:102)
> >>>>>> at android.os.Looper.loop(Looper.java:135) at
> >>>>>> android.app.ActivityThread.main(ActivityThread.java:5257)
> >>>>>> at java.lang.reflect.Method.invoke(Native Method) at
> >>>>>> java.lang.reflect.Method.invoke(Method.java:372) at
> >>>>>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(Zygote
> Ini
> >
> >>>>>>
> t.java:903)
> >>>>>>
> >>>>>>
> > at
> >>>>>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
> >>>>>>
> >>>>>>
> >>>>>>
> The device reported that the app had stopped running but in
> >>>>>> fact it returned it to the workflows view but all the
> >>>>>> workflows had disappeared from the view. I guess it’s
> >>>>>> probably because this functionality is not ready yet but
> >>>>>> I figured I should report it anyway.
> >>>>>>
> >>>>>> Cheers,
> >>>>>>
> >>>>>> Ian
> >>>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>> -- *Akah Larry N.H*
> >>>>>
> >>>>> *Lead Software Engineer @ GiftedMom* *Founder IceTeck Inc*
> >>>>> *www.iceteck.com*
> >>>>>
> >>>>> Developing technologies for emergence and sustainable
> >>>>> development.
> >>>>>
> >>>>>
> >>>>
> >>>>
> >>
> >
> >
> >
> -----BEGIN PGP SIGNATURE-----
> Version: GnuPG v1
>
> iQEcBAEBAgAGBQJVkn8TAAoJEPK45GBX+Cy5iC0IAJ9YpVLfGxgdd+LHyo3eOMfY
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>
--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com*
Developing technologies for emergence and sustainable development.
Re: gsoc taverna mobile - creating a run causes 'fatal' error and
app stops.
Posted by Ian Dunlop <ia...@manchester.ac.uk>.
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Hello,
I think the workflow can just be sent as it is. The request is JSON
formatted but the things inside the request don't have to be. The
t2flow/xml can be sent base64 encoded as they are.
Cheers,
Ian
On 30/06/15 12:32, Larry Akah wrote:
> Hello, The workflows we get from myexperiment are formatted as xml
> or t2flow files. Do these absolutely need to be converted in json
> before posting or they can be sent as is?
>
> Cheers
>
> 2015-06-30 5:11 GMT-05:00 Ian Dunlop
> <ia...@manchester.ac.uk>:
>
> Hello,
>
> I've had a chat with the taverna player developer and you need to
> send a request as follows:
>
> POST to /workflows.json
>
> {"workflow" : { "document" :
> "data:application/octet-stream;base64,BASE64 ENCODED WORKFLOW GOES
> HERE"}}
>
> using HTTP basic auth with username:password base64 encoded in the
> Authorization header in the request e.g. Authorization: Basic
> QWxhZGRpbjpvcGVuIHNlc2FtZQ==. You have to specify .json because
> the content type is not being respected for some reason.
>
>
> Here's an example using curl: curl -u your_username -X POST -H
> "Content-Type: application/json" -d@wf.json
> http://taverna-player-server/workflows.json
>
> where wf.json is the workflow file, this would then prompt for a
> passwor d. Hope this helps, please let us know how you get on.
>
> Cheers,
>
> Ian
>
> On 29/06/15 19:23, Larry Akah wrote:
>>>> I need some help with uploading a workflow to the player. The
>>>> API doesn't make it seem possible currently. How is it done?
>>>>
>>>> cheers
>>>>
>>>> 2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>:
>>>>
>>>>> Yes, its not yet ready. i still need to adjust that because
>>>>> at first , i was using the player to fetch workflows and
>>>>> derived a run skeleton to use for creating workflows. There
>>>>> is still some stuff that needs to be fixed there.
>>>>>
>>>>> Cheers
>>>>>
>>>>> 2015-06-29 16:34 GMT+01:00 Ian Dunlop
>>>>> <Ia...@manchester.ac.uk>:
>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> I got a ‘fatal’ error which the emulator reported when
>>>>>> clicking on ‘create run’:
>>>>>>
>>>>>> 06-29 15:25:39.554
>>>>>> 8216-8216/mobile.taverna.apache.org.tavernamobile
>>>>>> E/AndroidRuntime﹕ FATAL EXCEPTION: main Process:
>>>>>> mobile.taverna.apache.org.tavernamobile, PID: 8216
>>>>>> java.lang.NullPointerException: Attempt to invoke
>>>>>> virtual method 'void android.app.AlertDialog.show()' on a
>>>>>> null object reference at
>>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
lFr
>
>>>>>>
agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
>>>>>>
>>>>>>
> at
>>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
lFr
>
>>>>>>
agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
>>>>>>
>>>>>>
> at android.os.AsyncTask.finish(AsyncTask.java:636)
>>>>>> at android.os.AsyncTask.access$500(AsyncTask.java:177)
>>>>>> at
>>>>>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java
:65
>
>>>>>>
3)
>>>>>>
>>>>>>
> at android.os.Handler.dispatchMessage(Handler.java:102)
>>>>>> at android.os.Looper.loop(Looper.java:135) at
>>>>>> android.app.ActivityThread.main(ActivityThread.java:5257)
>>>>>> at java.lang.reflect.Method.invoke(Native Method) at
>>>>>> java.lang.reflect.Method.invoke(Method.java:372) at
>>>>>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(Zygote
Ini
>
>>>>>>
t.java:903)
>>>>>>
>>>>>>
> at
>>>>>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
>>>>>>
>>>>>>
>>>>>>
The device reported that the app had stopped running but in
>>>>>> fact it returned it to the workflows view but all the
>>>>>> workflows had disappeared from the view. I guess it’s
>>>>>> probably because this functionality is not ready yet but
>>>>>> I figured I should report it anyway.
>>>>>>
>>>>>> Cheers,
>>>>>>
>>>>>> Ian
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> -- *Akah Larry N.H*
>>>>>
>>>>> *Lead Software Engineer @ GiftedMom* *Founder IceTeck Inc*
>>>>> *www.iceteck.com*
>>>>>
>>>>> Developing technologies for emergence and sustainable
>>>>> development.
>>>>>
>>>>>
>>>>
>>>>
>>
>
>
>
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Re: gsoc taverna mobile - creating a run causes 'fatal' error and app stops.
Posted by Larry Akah <la...@gmail.com>.
Hello,
The workflows we get from myexperiment are formatted as xml or t2flow
files. Do these absolutely need to be converted in json before posting or
they can be sent as is?
Cheers
2015-06-30 5:11 GMT-05:00 Ian Dunlop <ia...@manchester.ac.uk>:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> Hello,
>
> I've had a chat with the taverna player developer and you need to send
> a request as follows:
>
> POST to /workflows.json
>
> {"workflow" : { "document" :
> "data:application/octet-stream;base64,BASE64 ENCODED WORKFLOW GOES
> HERE"}}
>
> using HTTP basic auth with username:password base64 encoded in the
> Authorization header in the request e.g. Authorization: Basic
> QWxhZGRpbjpvcGVuIHNlc2FtZQ==. You have to specify .json because the
> content type is not being respected for some reason.
>
>
> Here's an example using curl:
> curl -u your_username -X POST -H "Content-Type: application/json"
> - -d@wf.json http://taverna-player-server/workflows.json
>
> where wf.json is the workflow file, this would then prompt for a passwor
> d.
> Hope this helps, please let us know how you get on.
>
> Cheers,
>
> Ian
>
> On 29/06/15 19:23, Larry Akah wrote:
> > I need some help with uploading a workflow to the player. The API
> > doesn't make it seem possible currently. How is it done?
> >
> > cheers
> >
> > 2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>:
> >
> >> Yes, its not yet ready. i still need to adjust that because at
> >> first , i was using the player to fetch workflows and derived a
> >> run skeleton to use for creating workflows. There is still some
> >> stuff that needs to be fixed there.
> >>
> >> Cheers
> >>
> >> 2015-06-29 16:34 GMT+01:00 Ian Dunlop
> >> <Ia...@manchester.ac.uk>:
> >>
> >>> Hello,
> >>>
> >>> I got a ‘fatal’ error which the emulator reported when clicking
> >>> on ‘create run’:
> >>>
> >>> 06-29 15:25:39.554
> >>> 8216-8216/mobile.taverna.apache.org.tavernamobile
> >>> E/AndroidRuntime﹕ FATAL EXCEPTION: main Process:
> >>> mobile.taverna.apache.org.tavernamobile, PID: 8216
> >>> java.lang.NullPointerException: Attempt to invoke virtual
> >>> method 'void android.app.AlertDialog.show()' on a null object
> >>> reference at
> >>> org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFr
> agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
> >>>
> >>>
> at
> >>> org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFr
> agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
> >>>
> >>>
> at android.os.AsyncTask.finish(AsyncTask.java:636)
> >>> at android.os.AsyncTask.access$500(AsyncTask.java:177) at
> >>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java:65
> 3)
> >>>
> >>>
> at android.os.Handler.dispatchMessage(Handler.java:102)
> >>> at android.os.Looper.loop(Looper.java:135) at
> >>> android.app.ActivityThread.main(ActivityThread.java:5257) at
> >>> java.lang.reflect.Method.invoke(Native Method) at
> >>> java.lang.reflect.Method.invoke(Method.java:372) at
> >>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteIni
> t.java:903)
> >>>
> >>>
> at
> >>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
> >>>
> >>> The device reported that the app had stopped running but in
> >>> fact it returned it to the workflows view but all the workflows
> >>> had disappeared from the view. I guess it’s probably because
> >>> this functionality is not ready yet but I figured I should
> >>> report it anyway.
> >>>
> >>> Cheers,
> >>>
> >>> Ian
> >>>
> >>
> >>
> >>
> >> -- *Akah Larry N.H*
> >>
> >> *Lead Software Engineer @ GiftedMom* *Founder IceTeck Inc*
> >> *www.iceteck.com*
> >>
> >> Developing technologies for emergence and sustainable
> >> development.
> >>
> >>
> >
> >
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> Version: GnuPG v1
>
> iQEcBAEBAgAGBQJVkmtSAAoJEPK45GBX+Cy5u2kIAITJcbvb9Jux4HURxUG/Tgoh
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> =orPD
> -----END PGP SIGNATURE-----
>
--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com*
Developing technologies for emergence and sustainable development.
Re: gsoc taverna mobile - creating a run causes 'fatal' error and
app stops.
Posted by Ian Dunlop <ia...@manchester.ac.uk>.
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Hello,
I've had a chat with the taverna player developer and you need to send
a request as follows:
POST to /workflows.json
{"workflow" : { "document" :
"data:application/octet-stream;base64,BASE64 ENCODED WORKFLOW GOES
HERE"}}
using HTTP basic auth with username:password base64 encoded in the
Authorization header in the request e.g. Authorization: Basic
QWxhZGRpbjpvcGVuIHNlc2FtZQ==. You have to specify .json because the
content type is not being respected for some reason.
Here's an example using curl:
curl -u your_username -X POST -H "Content-Type: application/json"
- -d@wf.json http://taverna-player-server/workflows.json
where wf.json is the workflow file, this would then prompt for a passwor
d.
Hope this helps, please let us know how you get on.
Cheers,
Ian
On 29/06/15 19:23, Larry Akah wrote:
> I need some help with uploading a workflow to the player. The API
> doesn't make it seem possible currently. How is it done?
>
> cheers
>
> 2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>:
>
>> Yes, its not yet ready. i still need to adjust that because at
>> first , i was using the player to fetch workflows and derived a
>> run skeleton to use for creating workflows. There is still some
>> stuff that needs to be fixed there.
>>
>> Cheers
>>
>> 2015-06-29 16:34 GMT+01:00 Ian Dunlop
>> <Ia...@manchester.ac.uk>:
>>
>>> Hello,
>>>
>>> I got a ‘fatal’ error which the emulator reported when clicking
>>> on ‘create run’:
>>>
>>> 06-29 15:25:39.554
>>> 8216-8216/mobile.taverna.apache.org.tavernamobile
>>> E/AndroidRuntime﹕ FATAL EXCEPTION: main Process:
>>> mobile.taverna.apache.org.tavernamobile, PID: 8216
>>> java.lang.NullPointerException: Attempt to invoke virtual
>>> method 'void android.app.AlertDialog.show()' on a null object
>>> reference at
>>> org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFr
agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
>>>
>>>
at
>>> org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFr
agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
>>>
>>>
at android.os.AsyncTask.finish(AsyncTask.java:636)
>>> at android.os.AsyncTask.access$500(AsyncTask.java:177) at
>>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java:65
3)
>>>
>>>
at android.os.Handler.dispatchMessage(Handler.java:102)
>>> at android.os.Looper.loop(Looper.java:135) at
>>> android.app.ActivityThread.main(ActivityThread.java:5257) at
>>> java.lang.reflect.Method.invoke(Native Method) at
>>> java.lang.reflect.Method.invoke(Method.java:372) at
>>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteIni
t.java:903)
>>>
>>>
at
>>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
>>>
>>> The device reported that the app had stopped running but in
>>> fact it returned it to the workflows view but all the workflows
>>> had disappeared from the view. I guess it’s probably because
>>> this functionality is not ready yet but I figured I should
>>> report it anyway.
>>>
>>> Cheers,
>>>
>>> Ian
>>>
>>
>>
>>
>> -- *Akah Larry N.H*
>>
>> *Lead Software Engineer @ GiftedMom* *Founder IceTeck Inc*
>> *www.iceteck.com*
>>
>> Developing technologies for emergence and sustainable
>> development.
>>
>>
>
>
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Re: gsoc taverna mobile - creating a run causes 'fatal' error and app stops.
Posted by Larry Akah <la...@gmail.com>.
I need some help with uploading a workflow to the player. The API doesn't
make it seem possible currently.
How is it done?
cheers
2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>:
> Yes, its not yet ready.
> i still need to adjust that because at first , i was using the player to
> fetch workflows and derived a run skeleton to use for creating workflows.
> There is still some stuff that needs to be fixed there.
>
> Cheers
>
> 2015-06-29 16:34 GMT+01:00 Ian Dunlop <Ia...@manchester.ac.uk>:
>
>> Hello,
>>
>> I got a ‘fatal’ error which the emulator reported when clicking on
>> ‘create run’:
>>
>> 06-29 15:25:39.554 8216-8216/mobile.taverna.apache.org.tavernamobile
>> E/AndroidRuntime﹕ FATAL EXCEPTION: main
>> Process: mobile.taverna.apache.org.tavernamobile, PID: 8216
>> java.lang.NullPointerException: Attempt to invoke virtual method
>> 'void android.app.AlertDialog.show()' on a null object reference
>> at
>> org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFragment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
>> at
>> org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFragment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
>> at android.os.AsyncTask.finish(AsyncTask.java:636)
>> at android.os.AsyncTask.access$500(AsyncTask.java:177)
>> at
>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java:653)
>> at android.os.Handler.dispatchMessage(Handler.java:102)
>> at android.os.Looper.loop(Looper.java:135)
>> at android.app.ActivityThread.main(ActivityThread.java:5257)
>> at java.lang.reflect.Method.invoke(Native Method)
>> at java.lang.reflect.Method.invoke(Method.java:372)
>> at
>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:903)
>> at
>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
>>
>> The device reported that the app had stopped running but in fact it
>> returned it to the workflows view but all the workflows had disappeared
>> from the view.
>> I guess it’s probably because this functionality is not ready yet but I
>> figured I should report it anyway.
>>
>> Cheers,
>>
>> Ian
>>
>
>
>
> --
> *Akah Larry N.H*
>
> *Lead Software Engineer @ GiftedMom*
> *Founder IceTeck Inc*
> *www.iceteck.com*
>
> Developing technologies for emergence and sustainable development.
>
>
--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com*
Developing technologies for emergence and sustainable development.
Re: gsoc taverna mobile - creating a run causes 'fatal' error and app stops.
Posted by Larry Akah <la...@gmail.com>.
Yes, its not yet ready.
i still need to adjust that because at first , i was using the player to
fetch workflows and derived a run skeleton to use for creating workflows.
There is still some stuff that needs to be fixed there.
Cheers
2015-06-29 16:34 GMT+01:00 Ian Dunlop <Ia...@manchester.ac.uk>:
> Hello,
>
> I got a ‘fatal’ error which the emulator reported when clicking on ‘create
> run’:
>
> 06-29 15:25:39.554 8216-8216/mobile.taverna.apache.org.tavernamobile
> E/AndroidRuntime﹕ FATAL EXCEPTION: main
> Process: mobile.taverna.apache.org.tavernamobile, PID: 8216
> java.lang.NullPointerException: Attempt to invoke virtual method 'void
> android.app.AlertDialog.show()' on a null object reference
> at
> org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFragment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
> at
> org.apache.taverna.mobile.fragments.workflowdetails.WorkflowdetailFragment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
> at android.os.AsyncTask.finish(AsyncTask.java:636)
> at android.os.AsyncTask.access$500(AsyncTask.java:177)
> at
> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java:653)
> at android.os.Handler.dispatchMessage(Handler.java:102)
> at android.os.Looper.loop(Looper.java:135)
> at android.app.ActivityThread.main(ActivityThread.java:5257)
> at java.lang.reflect.Method.invoke(Native Method)
> at java.lang.reflect.Method.invoke(Method.java:372)
> at
> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:903)
> at com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
>
> The device reported that the app had stopped running but in fact it
> returned it to the workflows view but all the workflows had disappeared
> from the view.
> I guess it’s probably because this functionality is not ready yet but I
> figured I should report it anyway.
>
> Cheers,
>
> Ian
>
--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com*
Developing technologies for emergence and sustainable development.