You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@airavata.apache.org by di...@apache.org on 2024/03/17 01:44:22 UTC
(airavata-cerebrum) branch main updated (302dafb -> d41d5c3)
This is an automated email from the ASF dual-hosted git repository.
dimuthuupe pushed a change to branch main
in repository https://gitbox.apache.org/repos/asf/airavata-cerebrum.git
from 302dafb Create .asf.yaml
add b46d894 Added some utility function to download data from cellxgene
add 43195b7 added method to retreive the dataset data frame
add a9bfb64 Merge branch 'apache:main' into main
add b86ee8e rename to cellxgene
add 9608202 rename folder
add 4cade83 added abc mouse and bicn interfaces
add 62836cd remove download notebook and add it to model
add 9354f5f Added documentation for the python functions
add 0f10cca added download part in the notebook
add 8f9dab6 move jupyter notebooks to the notebooks folder
add d13751d added init py
add a8b3ff5 removed cellxgene routines
add 26ed807 update requirements with scanpy, anndata etc.
new d41d5c3 Merge pull request #11 from srirampc/main
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
{cybershuttle => atlas}/__init__.py | 0
atlas/abc_mouse.py | 406 ++++++++++
atlas/bicn.py | 28 +
notebooks/merfish2model.ipynb | 1491 +++++++++++++++++++++++++++++++++++
requirements.txt | 7 +-
5 files changed, 1931 insertions(+), 1 deletion(-)
copy {cybershuttle => atlas}/__init__.py (100%)
create mode 100644 atlas/abc_mouse.py
create mode 100644 atlas/bicn.py
create mode 100644 notebooks/merfish2model.ipynb
(airavata-cerebrum) 01/01: Merge pull request #11 from srirampc/main
Posted by di...@apache.org.
This is an automated email from the ASF dual-hosted git repository.
dimuthuupe pushed a commit to branch main
in repository https://gitbox.apache.org/repos/asf/airavata-cerebrum.git
commit d41d5c3f61eadb377c7009b875b750d60ee5113c
Merge: 302dafb 26ed807
Author: Dimuthu Wannipurage <di...@gmail.com>
AuthorDate: Sat Mar 16 21:44:16 2024 -0400
Merge pull request #11 from srirampc/main
Allen Brain Cell Atlas (ABC) Mouse MERFISH Data Analysis
atlas/__init__.py | 0
atlas/abc_mouse.py | 406 +++++++++++
atlas/bicn.py | 28 +
notebooks/merfish2model.ipynb | 1491 +++++++++++++++++++++++++++++++++++++++++
requirements.txt | 7 +-
5 files changed, 1931 insertions(+), 1 deletion(-)