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Posted to issues@spark.apache.org by "Reynold Xin (JIRA)" <ji...@apache.org> on 2015/07/31 06:48:04 UTC
[jira] [Updated] (SPARK-9499) Possible file handle leak in
spilling/sort code
[ https://issues.apache.org/jira/browse/SPARK-9499?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Reynold Xin updated SPARK-9499:
-------------------------------
Priority: Blocker (was: Critical)
> Possible file handle leak in spilling/sort code
> -----------------------------------------------
>
> Key: SPARK-9499
> URL: https://issues.apache.org/jira/browse/SPARK-9499
> Project: Spark
> Issue Type: Bug
> Components: SQL
> Reporter: Reynold Xin
> Priority: Blocker
>
> As reported by [~hvanhovell]. See SPARK-8850.
> Hi,
> I am getting a Too many open files error since the unsafe mode is on. The same thing popped up when playing with unsafe before. The error is below:
> {noformat}
> 15/07/30 23:37:29 WARN TaskSetManager: Lost task 2.0 in stage 33.0 (TID 2423, localhost): java.io.FileNotFoundException: /tmp/blockmgr-b3d3e14a-f313-4075-8082-7d97f012e35a/14/temp_shuffle_1cab42fa-dcb1-4114-ae53-1674446f9dac (Too many open files)
> at java.io.FileOutputStream.open0(Native Method)
> at java.io.FileOutputStream.open(FileOutputStream.java:270)
> at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
> at org.apache.spark.storage.DiskBlockObjectWriter.open(DiskBlockObjectWriter.scala:88)
> at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.insertAll(BypassMergeSortShuffleWriter.java:111)
> at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:71)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
> at org.apache.spark.scheduler.Task.run(Task.scala:86)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> {noformat}
> I am currently working on local mode (which is probably the cause of the problem) using the following command line:
> {noformat}
> $SPARK_HOME/bin/spark-shell --master local[*] --driver-memory 14G --driver-library-path $HADOOP_NATIVE_LIB
> {noformat}
> The maximum number of files I can open are 1024 (ulimit -n). I have tried to run the same code with an increased limit, but this didn't work out.
> Dump of all open files after a Too Many Files Open error.
> The command used to make the dump:
> {code}
> lsof -c java > open
> {code}
> The job starts crashing after as soon as I start sorting 10000000 rows for the 9th time (doing benchmarking). I guess files are left open after every benchmark? Is there a way to trigger the closing of files?
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